BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2017 Length=346 Score E Sequences producing significant alignments: (Bits) Value gi|15609154|ref|NP_216533.1| transcriptional regulatory protein ... 706 0.0 gi|15841500|ref|NP_336537.1| DNA-binding protein, putative [Myco... 704 0.0 gi|340627029|ref|YP_004745481.1| putative transcriptional regula... 692 0.0 gi|254551040|ref|ZP_05141487.1| transcriptional regulator [Mycob... 678 0.0 gi|260551353|ref|ZP_05825553.1| DNA-binding helix-turn-helix pro... 183 3e-44 gi|209552009|ref|YP_002283925.1| protein of unknown function DUF... 181 1e-43 gi|258591600|emb|CBE67901.1| conserved protein of unknown functi... 172 6e-41 gi|226951723|ref|ZP_03822187.1| DNA-binding helix-turn-helix pro... 172 7e-41 gi|258652873|ref|YP_003202029.1| hypothetical protein Namu_2694 ... 171 2e-40 gi|50953954|ref|YP_061242.1| DNA-binding helix-turn-helix protei... 170 4e-40 gi|323517023|gb|ADX91404.1| hypothetical protein ABTW07_0968 [Ac... 169 5e-40 gi|317046283|ref|YP_004113931.1| hypothetical protein Pat9b_0045... 165 1e-38 gi|290956881|ref|YP_003488063.1| regulatory protein [Streptomyce... 164 1e-38 gi|300789149|ref|YP_003769440.1| XRE family transcriptional regu... 163 4e-38 gi|336247805|ref|YP_004591515.1| hypothetical protein EAE_06560 ... 162 1e-37 gi|110637893|ref|YP_678100.1| hypothetical protein CHU_1489 [Cyt... 157 2e-36 gi|77462165|ref|YP_351669.1| putative DNA-binding protein [Rhodo... 156 5e-36 gi|27382331|ref|NP_773860.1| hypothetical protein bll7220 [Brady... 149 5e-34 gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [P... 149 7e-34 gi|92116905|ref|YP_576634.1| hypothetical protein Nham_1350 [Nit... 145 6e-33 gi|297617956|ref|YP_003703115.1| hypothetical protein Slip_1795 ... 143 5e-32 gi|295133277|ref|YP_003583953.1| hypothetical protein ZPR_1421 [... 142 1e-31 gi|239502087|ref|ZP_04661397.1| hypothetical protein AbauAB_0721... 140 4e-31 gi|336174006|ref|YP_004581144.1| hypothetical protein Lacal_2878... 140 4e-31 gi|294648966|ref|ZP_06726414.1| hypothetical protein HMP0015_062... 140 4e-31 gi|237716235|ref|ZP_04546716.1| DNA-binding helix-turn-helix pro... 139 6e-31 gi|313669549|ref|YP_004049974.1| hypothetical protein Sulku_2772... 139 6e-31 gi|262407843|ref|ZP_06084391.1| DNA-binding helix-turn-helix pro... 139 7e-31 gi|254384564|ref|ZP_04999904.1| DNA-binding protein [Streptomyce... 138 2e-30 gi|345471325|dbj|BAK72775.1| conserved hypothetical protein [Arc... 137 3e-30 gi|334196918|gb|AEG70103.1| conserved hypothetical protein [Rals... 135 7e-30 gi|261881202|ref|ZP_06007629.1| conserved hypothetical protein [... 135 1e-29 gi|341576429|gb|EGS26840.1| transcriptional regulator [Streptoco... 134 3e-29 gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 ... 134 3e-29 gi|329577286|gb|EGG58747.1| DNA-binding helix-turn-helix protein... 133 5e-29 gi|239990435|ref|ZP_04711099.1| hypothetical protein SrosN1_2421... 132 1e-28 gi|291447444|ref|ZP_06586834.1| DNA-binding protein [Streptomyce... 131 1e-28 gi|222101967|ref|YP_002546557.1| transcriptional regulator, HTH_... 131 1e-28 gi|333372902|ref|ZP_08464823.1| transcriptional regulator with a... 131 1e-28 gi|332360443|gb|EGJ38254.1| cro/CI family zinc-binding transcrip... 131 2e-28 gi|320536515|ref|ZP_08036545.1| helix-turn-helix protein [Trepon... 131 2e-28 gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein... 130 3e-28 gi|120400369|gb|ABM21424.1| transcriptional regulator [Lactobaci... 130 3e-28 gi|332882633|ref|ZP_08450245.1| DNA-binding helix-turn-helix pro... 130 3e-28 gi|322375254|ref|ZP_08049767.1| zinc-binding transcriptional reg... 130 3e-28 gi|255324903|ref|ZP_05366012.1| helix-turn-helix domain protein ... 129 6e-28 gi|339009608|ref|ZP_08642180.1| hypothetical protein BRLA_c34270... 129 6e-28 gi|310819908|ref|YP_003952266.1| phage-like DNA-binding protein ... 129 6e-28 gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-contain... 129 7e-28 gi|148556374|ref|YP_001263956.1| hypothetical protein Swit_3472 ... 128 1e-27 >gi|15609154|ref|NP_216533.1| transcriptional regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661831|ref|YP_001283354.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] gi|167970453|ref|ZP_02552730.1| putative transcriptional regulatory protein [Mycobacterium tuberculosis H37Ra] 10 more sequence titles Length=346 Score = 706 bits (1823), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/346 (100%), Positives = 346/346 (100%), Gaps = 0/346 (0%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD Sbjct 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 Query 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA Sbjct 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 Query 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY Sbjct 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR Sbjct 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 Query 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE Sbjct 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 Query 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI Sbjct 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 >gi|15841500|ref|NP_336537.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551] gi|31793197|ref|NP_855690.1| regulatory protein [Mycobacterium bovis AF2122/97] gi|121637901|ref|YP_978124.1| regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] 64 more sequence titles Length=346 Score = 704 bits (1816), Expect = 0.0, Method: Compositional matrix adjust. Identities = 345/346 (99%), Positives = 345/346 (99%), Gaps = 0/346 (0%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD Sbjct 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 Query 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA Sbjct 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 Query 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY Sbjct 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR Sbjct 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 Query 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 LDLGKLLELKREWGVSMQALL RAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE Sbjct 241 LDLGKLLELKREWGVSMQALLERAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 Query 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI Sbjct 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 >gi|340627029|ref|YP_004745481.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] gi|340005219|emb|CCC44372.1| putative transcriptional regulatory protein [Mycobacterium canettii CIPT 140010059] Length=346 Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/346 (98%), Positives = 342/346 (99%), Gaps = 0/346 (0%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 MNGLGDVLAVARKARGLTQ ELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVT+D Sbjct 1 MNGLGDVLAVARKARGLTQTELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTED 60 Query 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQ+EARLNLL VHASFLFEEVAINSEQHVPA Sbjct 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQMEARLNLLGVHASFLFEEVAINSEQHVPA 120 Query 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY Sbjct 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 PVMLINANAAPDRKRLTLAHELGHLVLH+TNPTENMETEATAFAAEFLMPESEIRPELRR Sbjct 181 PVMLINANAAPDRKRLTLAHELGHLVLHATNPTENMETEATAFAAEFLMPESEIRPELRR 240 Query 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 LDLGKLLELKREWGVSM+ALL RAYRMGLVSAEARTK YKAMNARGWKTKEPGIESIVRE Sbjct 241 LDLGKLLELKREWGVSMRALLERAYRMGLVSAEARTKFYKAMNARGWKTKEPGIESIVRE 300 Query 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI Sbjct 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 >gi|254551040|ref|ZP_05141487.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=346 Score = 678 bits (1750), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/346 (97%), Positives = 335/346 (97%), Gaps = 0/346 (0%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD Sbjct 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 Query 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA Sbjct 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA 120 Query 121 FDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 FDPEFTAA VR MPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY Sbjct 121 FDPEFTAATGRRTQVRLSVGMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR Sbjct 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 Query 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 LDLGKLLELKREWGVSMQALL RAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE Sbjct 241 LDLGKLLELKREWGVSMQALLERAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 Query 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI Sbjct 301 KPSLPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 >gi|260551353|ref|ZP_05825553.1| DNA-binding helix-turn-helix protein [Acinetobacter sp. RUH2624] gi|332852788|ref|ZP_08434380.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332871017|ref|ZP_08439630.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] gi|260405516|gb|EEW99008.1| DNA-binding helix-turn-helix protein [Acinetobacter sp. RUH2624] gi|332728999|gb|EGJ60349.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013150] gi|332731777|gb|EGJ63057.1| DNA-binding helix-turn-helix protein [Acinetobacter baumannii 6013113] Length=359 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 105/291 (37%), Positives = 164/291 (57%), Gaps = 5/291 (1%) Query 6 DVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHG 65 ++L + R+ RG Q LA++ L+Q +++ E+G +P++ +V+ LA++L + Sbjct 9 ELLRIVRQFRGFGQTALAKMASLSQGTLSKIEAGLLEPNEEMVSNLAKVLNFPVSIFYET 68 Query 66 NR-FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPE 124 + F L+V R++ + A QLEA LN+ ++ L + + + +P + Sbjct 69 YKPFGLPLSVHPMYRKNSSIGKRAIEQLEAELNIRLFNSMKLVKAIEFEEDLPLPFLSLD 128 Query 125 -FTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY-PV 182 + E A L+R W +P GP+ NLT ++E AGCLVF DF+ + + G++ V P Sbjct 129 IYETPEKVAELLRRTWLIPNGPLKNLTDYVERAGCLVFHCDFSQEGVSGVTIKVPGLNPC 188 Query 183 MLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELR-RL 241 + I+ N DR+R TLAHELGH ++H P+ENME EA FA+ LMP +IRP L ++ Sbjct 189 IFIDKNMPSDRQRFTLAHELGHAIMHKL-PSENMEDEANRFASALLMPSKDIRPYLTGKI 247 Query 242 DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 L KL LK W VSM ALL A R GL++ + L+ M G++TKEP Sbjct 248 TLEKLATLKLVWKVSMNALLKTAEREGLLTPSQKKYLWIQMTKNGYRTKEP 298 >gi|209552009|ref|YP_002283925.1| protein of unknown function DUF955 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209539602|gb|ACI59533.1| protein of unknown function DUF955 [Rhizobium leguminosarum bv. trifolii WSM2304] Length=359 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 115/323 (36%), Positives = 169/323 (53%), Gaps = 7/323 (2%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 M GD+L +AR+ RG TQ A+ +G+ Q ++R E+G +PD ++ + A++ + D Sbjct 1 MATFGDLLRLARQMRGYTQKRSADDLGVAQAVLSRLENGLIEPDDDLIVRAAKVFQLPRD 60 Query 61 LLIHGNRFRGA-LAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVP 119 + G ++V +R A + A LN+ H E V N +P Sbjct 61 FFAITDTIYGPPVSVHTMLRGKADVSARDIDMITAELNVRLFHLRMFMENVDFNPVTSLP 120 Query 120 AFDPE-FTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVD 178 D E F E A LVRA W++P GP+ NLTR +E AG +V E DF + G++ Sbjct 121 QLDIEQFETPERIAALVRAHWKLPKGPIRNLTRLLEQAGIIVAESDFHGASVSGVTFAAP 180 Query 179 DYP-VMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPE 237 P + LIN + DR R TLAHELGHLV+H PT +ME EA FA+ FL+P +I+ Sbjct 181 GRPAIFLINRHHPADRLRFTLAHELGHLVMHRF-PTASMEDEANRFASAFLLPPDDIKAA 239 Query 238 L--RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIE 295 RR+ L L LK+EW VSMQ+LL A ++ L++ ++ARGW+T+EP Sbjct 240 FAGRRVTLELLASLKQEWRVSMQSLLMAAQTQNAITDNQARYLWQQISARGWRTREPASL 299 Query 296 SIVREKPS-LPAHIGMTLRSRGF 317 + P+ LP + + GF Sbjct 300 DFPFDGPTVLPTILKAHVVDLGF 322 >gi|258591600|emb|CBE67901.1| conserved protein of unknown function [NC10 bacterium 'Dutch sediment'] Length=352 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 101/301 (34%), Positives = 160/301 (54%), Gaps = 4/301 (1%) Query 7 VLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 ++ + R++RGLTQ ELA VG +Q I++ E+G ++ L+ L + Sbjct 9 MVVLGRESRGLTQSELATKVGASQARISKIEAGLLPLSDEMLKTLSSALDYPEHFFFQDE 68 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFD-PEF 125 G R+ +T ++ A +N+ R H + + + I + P FD EF Sbjct 69 DLYGIGTSILFHRKKETISIKTLNKIHAMVNIRRFHVAKMLKAAEIEPAKSFPKFDIDEF 128 Query 126 TA-AEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDYP-VM 183 AE+ A VRA W +P GP+ N+T+ +E AG ++ + DF T++ID +SQW+ P + Sbjct 129 DGQAENVALAVRASWVLPKGPIQNVTKAIEDAGGIIIKCDFDTRKIDAISQWITGLPPLF 188 Query 184 LINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRRLDL 243 +NA DR R +LAHELGH+++H T ++E +A FAA FLMP +IR L + + Sbjct 189 FVNAGVPGDRMRFSLAHELGHVIMHRTV-NADLEDQANRFAASFLMPADDIRHSLSEITV 247 Query 244 GKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVREKPS 303 KL LK W VSM ALL RA ++G ++ ++ + G++ +EP I E+P Sbjct 248 PKLAILKPYWKVSMGALLKRAAKLGKITERQERYIWMQFSKAGYRLREPPELDIPAEQPR 307 Query 304 L 304 L Sbjct 308 L 308 >gi|226951723|ref|ZP_03822187.1| DNA-binding helix-turn-helix protein [Acinetobacter sp. ATCC 27244] gi|226837513|gb|EEH69896.1| DNA-binding helix-turn-helix protein [Acinetobacter sp. ATCC 27244] Length=366 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 111/297 (38%), Positives = 161/297 (55%), Gaps = 13/297 (4%) Query 6 DVLAVARKARGLTQIELAELVG--LTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 D+L++AR RGL+Q EL +G +TQ ++++ ESGD P ++ L+ L Sbjct 13 DMLSIARNFRGLSQTELIAGMGQSITQASLSKIESGDLKPSDEVIQNLSNALHFPIRFFE 72 Query 64 HGNRFRGALAVDAHMRRHKT-TKASAWRQLEARLNLLRVHASFLFEEVAIN---SEQHVP 119 H + AL + H R K+ T A A ++ A + L H L E+ N + +P Sbjct 73 HIEKL-NALPISLHAYRKKSSTTAKALSRMNAEMMLKMGHVQTL--ELLTNVPKRKNSLP 129 Query 120 AFDP--EFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWV 177 F + ++AA+ +R+ W + P+ NLT +E AG LVF DF +DG+S + Sbjct 130 TFKIGIDVNTPQEAAKKLRSLWVLGNEPLENLTATVEDAGVLVFLCDFKDNNVDGVSLKM 189 Query 178 DDY-PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRP 236 P + +NAN DR R TLAHELGHLVLH P+E ME EA FAAEFLMPE +I Sbjct 190 HGVSPCVFLNANQPNDRIRFTLAHELGHLVLHE-EPSEFMEKEANDFAAEFLMPEEKIID 248 Query 237 ELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPG 293 +L +L L LK+EW SM AL+ RA +G +++ L++ M RG++ EP Sbjct 249 QLGSTNLAHYLRLKKEWKTSMAALIYRASELGTITSSQSANLWRQMAMRGYRKVEPN 305 >gi|258652873|ref|YP_003202029.1| hypothetical protein Namu_2694 [Nakamurella multipartita DSM 44233] gi|258556098|gb|ACV79040.1| protein of unknown function DUF955 [Nakamurella multipartita DSM 44233] Length=360 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 114/336 (34%), Positives = 171/336 (51%), Gaps = 15/336 (4%) Query 7 VLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 ++ + R+ARG TQ +LA ++Q I++ E+G + D +A+LA L D L Sbjct 7 MVTLMREARGWTQTQLAANAVMSQAVISKVETGALELDPERLARLAHALDCPPDFLERSA 66 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAI---NSEQHVPAFDP 123 H RR T + +++EA +L R+ L + + + + + D Sbjct 67 DLPSIEITCLHRRRASTMTVNTMKRIEAVTHLSRISVEGLLSGIELAPARTFERIEIMDD 126 Query 124 EFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY--- 180 AA A +R +W P GP+ NL +E+AG ++ F T D +S W +D Sbjct 127 RGPAA--IAGELRRRWSTPNGPIRNLIGLVESAGVVIVFRSFGTTGQDAVSTWPEDPGRP 184 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPEL-- 238 P+MLIN + DR R T+AHE GHLV+H PT+N E EA +FA EFL P EIR EL Sbjct 185 PMMLINTDLPSDRLRFTVAHEFGHLVMHRL-PTDNQEAEANSFAGEFLAPADEIRHELEG 243 Query 239 -RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESI 297 R D +L+ LK EWG+SM AL+ RA+ + ++ + + GW+T EPG + Sbjct 244 LRTSDFRRLMALKIEWGMSMAALIRRAHDLETITDRQYREFQVRLGKLGWRTSEPG--DV 301 Query 298 VREKPSLPAH-IGMTLRSRGFTDQQAAAIAGYANPA 332 RE PS+ I + R ++D + A +AG PA Sbjct 302 ARESPSIVNKIIALQRREHEYSDDELARLAGMTEPA 337 >gi|50953954|ref|YP_061242.1| DNA-binding helix-turn-helix protein [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950436|gb|AAT88137.1| DNA-binding helix-turn-helix protein [Leifsonia xyli subsp. xyli str. CTCB07] Length=384 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 114/326 (35%), Positives = 186/326 (58%), Gaps = 8/326 (2%) Query 7 VLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 +L + R++RG + +LA+L G+ QP +++ E+G D+ + +LAE L + + Sbjct 5 MLTLLRESRGYSGAQLAKLAGIPQPTLSKVENGLAVIDEARLQQLAEALDYPVEAFNWTD 64 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPE-F 125 G +V + R+ + + R+++A++NL R+ L + I+++ VP + E + Sbjct 65 PIYGFGSVAFYHRKQQALPQTTLRKIQAQVNLTRMRLDKLLRSIEIDTQYVVPCLEVEQY 124 Query 126 TAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLS-QWVDDYP-VM 183 AR VRA WRMPMGP+ ++ +E AG +V + + RI +S V YP +M Sbjct 125 GTPAAVARAVRALWRMPMGPIRDMAAALELAGIIVVRSNLESTRIAAISLDNVGIYPALM 184 Query 184 LINANAAPDRKRLTLAHELGHLVLHST-NPTENMETEATAFAAEFLMPESEIRPELRRLD 242 ++N DR+R TLAHELGHLV+HS T+ E EA AFAAEFLMP +EIR EL+ + Sbjct 185 ILNTGLPSDRERFTLAHELGHLVMHSALVDTDEAEREADAFAAEFLMPAAEIRTELKGIT 244 Query 243 LGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVREKP 302 L + +LK W V++ AL+ RAY +G++ L +M+ +GW+ EP IE + R+ P Sbjct 245 LARAAQLKVVWRVAISALIRRAYDLGVIENTRYKSLMVSMSQKGWRKSEP-IE-VTRDHP 302 Query 303 SLPAH-IGMTLRSRGFT-DQQAAAIA 326 ++ + I + L +T D+ A +A Sbjct 303 TVVSSLIKVHLTDHNYTFDELAQVVA 328 >gi|323517023|gb|ADX91404.1| hypothetical protein ABTW07_0968 [Acinetobacter baumannii TCDC-AB0715] gi|345447569|gb|ADX92777.2| hypothetical protein ABTW07_2353 [Acinetobacter baumannii TCDC-AB0715] Length=332 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 98/272 (37%), Positives = 152/272 (56%), Gaps = 5/272 (1%) Query 25 LVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR-FRGALAVDAHMRRHKT 83 + L+Q +++ E+G +P++ +V+ LA++L + + F L+V R++ + Sbjct 1 MASLSQGTLSKIEAGLLEPNEEMVSNLAKVLNFPVSIFYETYKPFGLPLSVHPMYRKNSS 60 Query 84 TKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPE-FTAAEDAARLVRAQWRMP 142 A QLEA LN+ ++ L + + + +P + + E A L+R W +P Sbjct 61 IGKRAIEQLEAELNIRLFNSMKLVKAIEFEEDLPLPFLSLDIYETPEKVAELLRRTWLIP 120 Query 143 MGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY-PVMLINANAAPDRKRLTLAHE 201 GP+ NLT ++E AGCLVF DF+ + + G++ V P + I+ N DR+R TLAHE Sbjct 121 NGPLKNLTDYVERAGCLVFHCDFSQEGVSGVTIKVPGLNPCIFIDKNMPSDRQRFTLAHE 180 Query 202 LGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELR-RLDLGKLLELKREWGVSMQAL 260 LGH ++H P+ENME EA FA+ LMP +IRP L ++ L KL LK W VSM AL Sbjct 181 LGHAIMHKL-PSENMEDEANRFASALLMPSKDIRPYLTGKITLEKLATLKLVWKVSMNAL 239 Query 261 LARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 L A R GL++ + L+ M G++TKEP Sbjct 240 LKTAEREGLLTPSQKKYLWIQMTKNGYRTKEP 271 >gi|317046283|ref|YP_004113931.1| hypothetical protein Pat9b_0045 [Pantoea sp. At-9b] gi|316947900|gb|ADU67375.1| protein of unknown function DUF955 [Pantoea sp. At-9b] Length=361 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 108/346 (32%), Positives = 174/346 (51%), Gaps = 13/346 (3%) Query 6 DVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHG 65 +++ + RK GL+Q ELA+++ ++Q +++ E G + + +A L + + Sbjct 13 EMIELRRKMLGLSQKELAQIIAISQGTLSKIEQGLKPATDDQIENIANALNCPVEFFMMS 72 Query 66 NR-FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPE 124 R + G ++ + R+ + +L A +N+ H L + V E +P +DP+ Sbjct 73 ERLYGGPISANPMYRKKASVSMKVLDKLVAEVNVRIAHLRKLLQFVDFEPEYELPYYDPD 132 Query 125 FTA--AEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDYP- 181 E AR VR W +P GP+ NL +E AG ++ + D + GLS + P Sbjct 133 DYEDNIEQIARNVRTAWHIPRGPIKNLVEALERAGVIIIDCDMEDTSLSGLSYNLSGLPP 192 Query 182 VMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRRL 241 ++LIN N DR R TLAHELGHLV+H PT ME EA +FAAE LMP S+I +LR + Sbjct 193 LILINKNQPMDRYRFTLAHELGHLVMHRA-PTPEMEEEANSFAAELLMPASDIYNDLRNV 251 Query 242 DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVREK 301 + + LK W SM AL RA + ++A +++ M+ + +K EP + EK Sbjct 252 SIERAAALKPFWRTSMAALFYRAKTLNAITAGQSDWIWRQMSIKRYKVDEPVKLDVNGEK 311 Query 302 PS-LPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 P+ L A I G+ + A+I N F PE +L+++ Sbjct 312 PTLLNAIIDHAKEELGYDQNELASIF-------NLFLPEVNQLYSL 350 >gi|290956881|ref|YP_003488063.1| regulatory protein [Streptomyces scabiei 87.22] gi|260646407|emb|CBG69503.1| putative regulatory protein [Streptomyces scabiei 87.22] Length=358 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 114/317 (36%), Positives = 164/317 (52%), Gaps = 34/317 (10%) Query 7 VLAVARKARGLTQIELAELVG------LTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 +L +AR +RG TQ ELA+ + +TQ ++R E+G V A+ L T D Sbjct 1 MLTLARDSRGWTQSELADEMARLDGSRITQGYVSRAEAGRIPVRDGRVQLFADALRYTAD 60 Query 61 LLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFL-----------FEE 109 L G H R+ + A A R++ A L L R+ L F Sbjct 61 TLCRATDTAGTGVGLVHHRKRASMGAPALRRIHATLALTRLQVDSLARAADLHRNDRFRR 120 Query 110 VAINSEQHVPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQR 169 V +N +F DAA +R +W +P GP+ ++ +E AG LV D T Sbjct 121 VEVN----------DFDTPADAAETMREEWNVPAGPIEDMVALLEDAGALVVVRDLCTTE 170 Query 170 IDGLSQWVDD-YPVMLINANAAPDRKRLTLAHELGHLVLHSTNPTEN--METEATAFAAE 226 +D +SQW YP++L+N++A DR R +LAHELGHLV+H+ P E E +A FAAE Sbjct 171 LDAVSQWPPGRYPLILLNSHAPGDRSRFSLAHELGHLVMHA-EPGEGRVQEDQANRFAAE 229 Query 227 FLMPESEIRPELR-RLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNAR 285 FLMP + PEL+ +D+ +LL+LK WGVSM AL+ RA +G++S L ++A Sbjct 230 FLMPHDAVLPELKPGIDVSRLLDLKARWGVSMAALIRRAMDLGVISEWHYRTLMVELSAL 289 Query 286 GWKTKEPGIESIVREKP 302 G++T EP +I RE P Sbjct 290 GYRTNEP--TTIRRETP 304 >gi|300789149|ref|YP_003769440.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|299798663|gb|ADJ49038.1| XRE family transcriptional regulator [Amycolatopsis mediterranei U32] gi|340530789|gb|AEK45994.1| XRE family transcriptional regulator [Amycolatopsis mediterranei S699] Length=369 Score = 163 bits (412), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/311 (37%), Positives = 166/311 (54%), Gaps = 16/311 (5%) Query 7 VLAVARKARGLTQIELAELVG--------LTQPAINRYESGDRDPDQHIVAKLAEILGVT 58 +L +AR +R LTQ ++A + +TQ +++ E+G + A +LG Sbjct 10 MLTLARDSRELTQSDVAREMSERRGDGPKITQGYVSKAEAGATSVSGERLELFAAVLGYP 69 Query 59 DDLL-IHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQH 117 +LL + GN F G H R+ ++ A+A R++ A LNL R+ L + Sbjct 70 TELLTLSGNVF-GLGTTCVHHRKRQSLSAAAGRRVHAYLNLARIQTRHLLHGTDVQPANA 128 Query 118 VPAFDPE-FTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQW 176 F A DAA VR +WR+P GPV ++ +E AG +V + + D +SQW Sbjct 129 FFRFPVSVIDTARDAAAEVRKRWRIPPGPVESMVDLLEQAGGIVVQRRTPSAAWDAVSQW 188 Query 177 VDD-YPVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIR 235 DD PV L+NA PDR+R TLAHELGH+V H N E EA FAAEFLMP ++I Sbjct 189 PDDEAPVFLLNAATPPDRQRFTLAHELGHIVCHPVV-GPNQEKEADEFAAEFLMPAAQIV 247 Query 236 PELRR-LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGI 294 +L+ LD+ L LK+ W VSM AL+ RA+ +G+++ L +++ G++T EPG+ Sbjct 248 ADLKSDLDIAMLGALKQRWKVSMAALVRRAHDLGVITDWRYRTLNVELSSLGYRTDEPGV 307 Query 295 ESIVREKPSLP 305 + E P LP Sbjct 308 --LPAEHPRLP 316 >gi|336247805|ref|YP_004591515.1| hypothetical protein EAE_06560 [Enterobacter aerogenes KCTC 2190] gi|334733861|gb|AEG96236.1| hypothetical protein EAE_06560 [Enterobacter aerogenes KCTC 2190] Length=362 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 107/346 (31%), Positives = 173/346 (50%), Gaps = 13/346 (3%) Query 6 DVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHG 65 +++ + RK G++Q +LA+++ ++Q +++ E G + + +A+ L + + Sbjct 14 EMIELRRKMLGMSQKDLAQIIAISQGTLSKIEQGLKPATDEQIDSIAKALNCPIEFFMMS 73 Query 66 NR-FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPE 124 R + G ++ + R+ + +L A +N+ H L + V E +P +DP+ Sbjct 74 ERLYGGPISANPMYRKKASVGMKVLDKLVAEVNVRIAHLRKLLQFVDFEPEYELPYYDPD 133 Query 125 FTA--AEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDYP- 181 E AR VR W +P GP+ NL +E AG ++ + D + GLS + P Sbjct 134 DYEDNIEQIARNVRTAWHIPRGPIKNLVEVLERAGVIIIDCDMEDTSLSGLSYNLAGLPP 193 Query 182 VMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRRL 241 ++ IN N DR R TLAHELGHLV+H PT ME EA FAAE LMP S+I +LR + Sbjct 194 LIFINKNQPMDRYRFTLAHELGHLVMHRA-PTPEMEEEANTFAAELLMPASDIYNDLRNV 252 Query 242 DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVREK 301 + K LK W SM AL RA + ++A +++ M+ + +K EP I EK Sbjct 253 SIEKAAALKPFWRTSMAALFYRAKTLKAITAGQSDWIWRQMSIKRYKVDEPVKLDINGEK 312 Query 302 PS-LPAHIGMTLRSRGFTDQQAAAIAGYANPADNPFRPEGGRLHAI 346 P+ L A I G+ + A+I N F PE +L+++ Sbjct 313 PTLLNAIIDHAKEELGYDQNELASIF-------NLFLPEVNQLYSL 351 >gi|110637893|ref|YP_678100.1| hypothetical protein CHU_1489 [Cytophaga hutchinsonii ATCC 33406] gi|110280574|gb|ABG58760.1| conserved hypothetical protein with helix-turn-helix motif [Cytophaga hutchinsonii ATCC 33406] Length=365 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 108/310 (35%), Positives = 165/310 (54%), Gaps = 14/310 (4%) Query 7 VLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 ++ +AR++RG+ Q ELA LV Q ++R E G + P + ++ ++++ L D + Sbjct 17 MIVLARESRGIGQRELATLVETDQGNLSRIEKGAQTPVKDMIERISKAL----DYPVSFF 72 Query 67 RFRGALA--VDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFD-- 122 R + ++ ++ RR EA++N+ +++ L V + E + P FD Sbjct 73 RLQHSVYDFSKSYYRRKLKMPKKEIELSEAKINISKINIETLIRAVEL-PEPNYPTFDLS 131 Query 123 PEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWV-DDYP 181 + +A+ A +L R W++P G V N T+ +E G LV DFA +DG + ++ P Sbjct 132 KDLSASACAIQL-RKYWKLPHGRVENFTKVLEDNGVLVANIDFAGIEVDGHAILTENNLP 190 Query 182 VMLINANAAPDRKRLTLAHELGHLVLH---STNPTENMETEATAFAAEFLMPESEIRPEL 238 ++ IN N DR RLTLAHELGHL LH ++E EA FAAE L PE EI P+L Sbjct 191 IIFINKNITADRYRLTLAHELGHLCLHVGREIAEDRDVEQEAFMFAAELLTPEVEIAPDL 250 Query 239 RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIV 298 + + KL ELK+ W VSM +LL RA+ + VS L++ M G+KT EP Sbjct 251 CEVSIEKLKELKKYWKVSMGSLLKRAHVLKGVSDNQYKYLWQQMGNMGYKTVEPKELEFE 310 Query 299 REKPSLPAHI 308 +EKP L I Sbjct 311 KEKPKLLKEI 320 >gi|77462165|ref|YP_351669.1| putative DNA-binding protein [Rhodobacter sphaeroides 2.4.1] gi|77386583|gb|ABA77768.1| Putative DNA-binding protein [Rhodobacter sphaeroides 2.4.1] Length=352 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 110/344 (32%), Positives = 170/344 (50%), Gaps = 10/344 (2%) Query 7 VLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 +L +AR RGLTQ + AE +G+ Q +R E+ + D + + + + Sbjct 1 MLRLARHLRGLTQKKTAEQLGVAQAVYSRMENDLVEVDDECIRVASRAFNLPPGFFDLPD 60 Query 67 RFRGA-LAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPE- 124 G +++ +R H A + A LN+ + EE+ + + FD E Sbjct 61 TVYGPPVSIHPMLRGHSDVTARELDMITAELNVRMFNLRRFLEEMDLKPSLDLRRFDLEQ 120 Query 125 FTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY-PVM 183 + + D A L+R W++P GP+ NLTR +E AG +V DF + G++ V P++ Sbjct 121 YGSPADIADLLRRHWKIPSGPIKNLTRLVERAGVVVGYSDFGGANVSGVTFAVPGRPPLV 180 Query 184 LINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPEL--RRL 241 L+N + DR R TLAHELGHLV+H PT NME EA FA+ FL+P E+ L R++ Sbjct 181 LLNPSHPADRVRFTLAHELGHLVMHRF-PTPNMEEEANLFASNFLLPRKELNDALRGRKV 239 Query 242 DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVREK 301 L L LK EW VSMQ +L R +++ L++ + RGWKT+EP ++ Sbjct 240 TLALLAALKPEWRVSMQGILYAIQREKIITPNQARYLWQQIATRGWKTREPANLDFEHDR 299 Query 302 PS-LPAHIGMTLRSRGFTDQQAAAIAG-YANPADN--PFRPEGG 341 P+ LP I + G + + +I Y+ D P+ E G Sbjct 300 PTVLPTIIKAMRQELGLSGEDIKSITQIYSEEFDRFYPYASEAG 343 >gi|27382331|ref|NP_773860.1| hypothetical protein bll7220 [Bradyrhizobium japonicum USDA 110] gi|27355502|dbj|BAC52485.1| bll7220 [Bradyrhizobium japonicum USDA 110] Length=363 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 104/326 (32%), Positives = 167/326 (52%), Gaps = 9/326 (2%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 M G +L +AR+ RG Q E AE + + ++R E+G ++P + ++A AEI V + Sbjct 1 MPKTGTMLRLARQLRGFPQNEAAECLRVPNAELSRIENGLKEPSEKLLAAAAEIFSVPQE 60 Query 61 LLIHGNRFRGA-LAVDAHMRRHKT-TKASAWRQLEARLNLLRVHASFLFEEVAINSEQHV 118 + GA ++V A M R K+ A+ ++ A LN+ +H L E + + Sbjct 61 FFAQTDAVYGAPVSVHAPMWRKKSNVSATELHRIVAELNVRVMHLRRLLEATDLEPVNKL 120 Query 119 PAFDPE--FTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQW 176 P D + AE A LVR W++P GP+ ++T +E AG LV D + G+ Sbjct 121 PRLDADEYDNDAEKIAGLVRRFWQVPEGPIQDMTALVEDAGILVAHSDLGGSSVSGVRFS 180 Query 177 VDDYP-VMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIR 235 V P ++++N + DR R TL HELGH+++HS PT ME EA FA+ FL+P + + Sbjct 181 VPGMPHIIVLNRSHPADRMRFTLCHELGHVIMHSF-PTPEMEDEADRFASCFLVPTEDFK 239 Query 236 PEL--RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPG 293 + RR+DL L LK EW VSM +L+ A R G ++ ++K N + +EP Sbjct 240 QSVAGRRVDLRTLAALKPEWKVSMGSLVFAAERAGALNKTQSQYIWKQFNIHKIRLREPP 299 Query 294 IESIVREKP-SLPAHIGMTLRSRGFT 318 E+P ++ + + + G+T Sbjct 300 ELDFPAEQPHTVSDLVALHINDMGYT 325 >gi|148807463|gb|ABR13534.1| phage-related DNA-binding protein [Pseudomonas aeruginosa] Length=400 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 105/333 (32%), Positives = 162/333 (49%), Gaps = 19/333 (5%) Query 12 RKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNRFRGA 71 R A GLTQ LAEL+G + I+++E+G P K+ E GV++ L+ + Sbjct 17 RSASGLTQEGLAELIGCSAGNISKWETGSSYPTAPSFHKICEFFGVSESWLLE-KPIKSG 75 Query 72 LAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPEFT---AA 128 + R TT +W +ARL+ L S+ +E ++PA++ + Sbjct 76 FLRPSFFRSQVTTPKISWDVADARLDWLE-EISYKLQESLEFPPINIPAYNGNNVREISD 134 Query 129 EDAARL---VRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQW--VDDYPVM 183 ED L R WR+ GP+ N+ + +E G + ++DG+S+W VD+ P + Sbjct 135 EDIESLADECRKTWRLGDGPIQNVIQVLENFGAVTARCTLGFLKMDGVSRWSEVDNRPYV 194 Query 184 LINAN-AAPDRKRLTLAHELGHLVLHSTNPTEN-------METEATAFAAEFLMPESEIR 235 LI + A+P R R AHELGHLVLH + +E +A FA+ FLMP Sbjct 195 LIAGDKASPIRNRFDAAHELGHLVLHRGVGFDQARVDYHLLENQAHRFASAFLMPSESFP 254 Query 236 PELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIE 295 E++ L L LK+ W VS+ A++ R + + +V EA +L+K +ARGW KEP E Sbjct 255 LEVKWPTLDGFLALKKRWKVSIAAMIKRCHDLNVVDDEAVVRLWKGRSARGWVKKEPLDE 314 Query 296 SIVREKPSLPAH-IGMTLRSRGFTDQQAAAIAG 327 E+P L + + M + + T Q I G Sbjct 315 EFSFEQPKLISRSVKMIIENDILTKNQLKEILG 347 >gi|92116905|ref|YP_576634.1| hypothetical protein Nham_1350 [Nitrobacter hamburgensis X14] gi|91799799|gb|ABE62174.1| protein of unknown function DUF955 [Nitrobacter hamburgensis X14] Length=362 Score = 145 bits (367), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/308 (32%), Positives = 160/308 (52%), Gaps = 7/308 (2%) Query 1 MNGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDD 60 M G++L +AR+ RGL Q E A +G+ ++R E+G ++P + ++ +++ + Sbjct 1 MGTTGNMLRLARQLRGLQQGEAAAGLGVPPVELSRVETGLKEPTEALLESASKLFTLPAA 60 Query 61 LLIHGNRFRGA-LAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVP 119 + GA ++V R+ A ++ A LN+ +H L + ++ + +P Sbjct 61 FFKQTDTVYGAPVSVHPMWRKKTDVPAPEVHRIIAELNIRIMHLRRLLDATDLDPVRKLP 120 Query 120 AFDPEFTAAEDAA--RLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWV 177 FD + + AA LVR W++P GP+ +LT +E AG +V DF I G++ + Sbjct 121 RFDSDSYGNDPAAIADLVRRFWQVPEGPIEDLTALVEDAGIIVAHSDFGGSSISGVTFSI 180 Query 178 DDY-PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRP 236 P++++N++ DR R TLAHELGH+V+H PT ME EA FA+ L+P +++P Sbjct 181 AGMPPLVVLNSSQPADRMRFTLAHELGHIVMHKF-PTPEMEDEANQFASNLLLPTEDVKP 239 Query 237 EL--RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGI 294 R++DL L LK EW VSM +L+ A R G ++ ++K N K +EP Sbjct 240 YFVGRKVDLPLLAALKPEWRVSMASLVFAAKRAGALNEGQAQYIWKQFNIHKIKLREPPE 299 Query 295 ESIVREKP 302 E P Sbjct 300 LDFTPETP 307 >gi|297617956|ref|YP_003703115.1| hypothetical protein Slip_1795 [Syntrophothermus lipocalidus DSM 12680] gi|297145793|gb|ADI02550.1| protein of unknown function DUF955 [Syntrophothermus lipocalidus DSM 12680] Length=371 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 104/310 (34%), Positives = 154/310 (50%), Gaps = 20/310 (6%) Query 5 GDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIH 64 G+ + AR+ GL+Q E A + +TQPA+ E+G P + ++ ++A G Sbjct 7 GERVKQARELIGLSQTEFARRLNITQPAVALIEAGRFTPSEELLNQIAFQTGFPVSFFFK 66 Query 65 GNRF---RGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAF 121 R G+L + M+ K +R + + + +FL + Sbjct 67 EIRIDFPMGSLLFRSKMQASVKEKTKVYRSAQL---IYELTDTFLARVRGLPVRISKLDV 123 Query 122 DPEFTAAEDAARLVRAQWRM-PMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD- 179 DP +AARL R+ + P P+ L +E AG ++ + ID S WV Sbjct 124 DPA-----EAARLTRSALGLSPDRPIPRLIYTLENAGVVIISLPVYSNSIDAFSCWVGTG 178 Query 180 --YPVMLINANAAPDRKRLTLAHELGHLVLHST--NPTENMETEATAFAAEFLMPESEIR 235 PV+ + DR+R +LAHELGHLVLH + ++E EA FAAEFL+PE IR Sbjct 179 TVRPVIALTEGWPGDRQRFSLAHELGHLVLHGSYHGTGIDVEQEANDFAAEFLVPEQAIR 238 Query 236 PELRR-LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGI 294 EL + L LLE+K+ WGVS+Q L+ RAYR+GL++ LY+ + A+GW+ KEP Sbjct 239 EELTTPVRLKDLLEVKKRWGVSVQFLVLRAYRLGLITQRQYKYLYQQIGAKGWRQKEP-- 296 Query 295 ESIVREKPSL 304 I EKP L Sbjct 297 IDIPVEKPRL 306 >gi|295133277|ref|YP_003583953.1| hypothetical protein ZPR_1421 [Zunongwangia profunda SM-A87] gi|294981292|gb|ADF51757.1| conserved hypothetical protein [Zunongwangia profunda SM-A87] Length=322 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 83/273 (31%), Positives = 146/273 (54%), Gaps = 12/273 (4%) Query 26 VGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNRFRGALAVDAHMRRHKTTK 85 +G+ Q +++ E+ D +V + A IL + + + H R+ T Sbjct 1 MGIKQGTLSKIENEFLSIDDDLVERFATILNYPVNFFYQK---KDVHLISGHYRKKITLP 57 Query 86 ASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPEFTAA-EDAARLVRAQWRMPMG 144 R+ ++++ +L H + + + E ++P ++ F + E A +R W++P G Sbjct 58 QKEVRKQQSKMTILEWHLEKMVSSIEL-PEPNLPKWNCNFDGSPEICANYIREFWKVPRG 116 Query 145 PVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD-YPVMLINANAAPDRKRLTLAHELG 203 + NLT+ +E G +V D ++DGLS + PV+ +N + + DR R LAHELG Sbjct 117 RIENLTKLIEDNGIVVIPLDLG--KLDGLSVFTQSGIPVIFVNKSMSGDRHRFNLAHELG 174 Query 204 HLVLH---STNPTENMETEATAFAAEFLMPESEIRPELRRLDLGKLLELKREWGVSMQAL 260 HL++H + + ++E EA FA+E L+P EI+P L ++ + KL ELKR W VSMQA+ Sbjct 175 HLIMHFAQKIDESRDVEDEAHLFASELLIPSREIKPHLVKITIEKLAELKRYWKVSMQAI 234 Query 261 LARAYR-MGLVSAEARTKLYKAMNARGWKTKEP 292 L ++Y+ + L++ L+K M+ G++ KEP Sbjct 235 LFKSYKQLSLITQNQYHYLWKQMSYLGYRKKEP 267 >gi|239502087|ref|ZP_04661397.1| hypothetical protein AbauAB_07212 [Acinetobacter baumannii AB900] Length=356 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/310 (32%), Positives = 165/310 (54%), Gaps = 8/310 (2%) Query 6 DVLAVARKARGLTQIELAELVG-LTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIH 64 D+L +AR RG++Q EL + +G +TQ A+++ E GD P +A+ L + Sbjct 7 DMLRIARDLRGMSQTELVQKMGNITQAALSKIEKGDIKPSDETKFNIAKTLNFPERFFHQ 66 Query 65 GNRFR-GALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDP 123 + F+ +++ A+ R+ +T A Q+ A + + + L + + +P++ Sbjct 67 DDHFKVSPISLHAY-RKKASTTAKILNQINAEMTIKASNLDKLDLFCQLEASLPLPSYQI 125 Query 124 EF--TAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLS-QWVDDY 180 ++A +AA +R +W + + P+ +LT +E AG +F +F IDG+S Q + Sbjct 126 HINVSSATEAALKLRKEWNLGLNPIEDLTGLIEKAGVFIFYCNFEEDHIDGVSLQTQNSP 185 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 P + +NAN DR R TLAHELGHL+LH P+ +ME EA FAAEFL+P ++ +L+ Sbjct 186 PCIFLNANQPNDRIRFTLAHELGHLILHKYAPSIDMEEEANEFAAEFLIPTEAVQGQLQT 245 Query 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 +L K W VSM AL+ ++ +G +S L++ M+ G++ EP S+ RE Sbjct 246 TNLKTYATHKLFWKVSMAALIVKSKHIGDISDRQSATLWRQMSMYGYRKAEP--YSLERE 303 Query 301 KPSLPAHIGM 310 P A + M Sbjct 304 HPQRFAKLMM 313 >gi|336174006|ref|YP_004581144.1| hypothetical protein Lacal_2878 [Lacinutrix sp. 5H-3-7-4] gi|334728578|gb|AEH02716.1| protein of unknown function DUF955 [Lacinutrix sp. 5H-3-7-4] Length=355 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 93/299 (32%), Positives = 149/299 (50%), Gaps = 22/299 (7%) Query 8 LAVARKARGLTQIELAELV-GLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 L AR+ RG +Q +L+ ++ GL+QP ++++E G ++ K+ L + L + Sbjct 8 LTFAREYRGYSQTDLSSMIDGLSQPNLSKFEKGLSTLSDELLLKIVSFLDFPFEFL---S 64 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLL-----RVHASFLFEEVAINSEQHVPAF 121 + + AH R+ T +E L+ + S ++ + A + + Sbjct 65 KNISNESNTAHYRKRTTITKKDRTDIEHSYKLIGYIIDEMADSLMWPDFAFKTLDIEDGY 124 Query 122 DPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD-Y 180 PE+ A L P PV ++ +E G ++ E D A + DG+S D+ Y Sbjct 125 TPEYIANYTRKFLGLK----PNEPVKDICNLLEVNGIIIAELD-AFDKFDGVSFETDNGY 179 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNP-------TENMETEATAFAAEFLMPESE 233 PV+++N N + DRKR TLAHELGHL++HS N + +E EA FA+EFLMP++ Sbjct 180 PVIVLNKNFSNDRKRFTLAHELGHLLMHSINNPAIPKHRKKELENEANTFASEFLMPKAA 239 Query 234 IRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 I+ L L L L E KR W SM +++ RA + ++ E T L + +GWK KEP Sbjct 240 IKNSLYDLRLSDLAEYKRFWLTSMASIIRRAKDLDCITKETYTYLNIEFSRKGWKKKEP 298 >gi|294648966|ref|ZP_06726414.1| hypothetical protein HMP0015_0623 [Acinetobacter haemolyticus ATCC 19194] gi|292825101|gb|EFF83856.1| hypothetical protein HMP0015_0623 [Acinetobacter haemolyticus ATCC 19194] Length=368 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/310 (32%), Positives = 165/310 (54%), Gaps = 8/310 (2%) Query 6 DVLAVARKARGLTQIELAELVG-LTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIH 64 D+L +AR RG++Q EL + +G +TQ A+++ E GD P +A+ L + Sbjct 19 DMLRIARDLRGMSQTELVQKMGNITQAALSKIEKGDIKPSDETKFNIAKTLNFPERFFHQ 78 Query 65 GNRFR-GALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDP 123 + F+ +++ A+ R+ +T A Q+ A + + + L + + +P++ Sbjct 79 NDHFKVSPISLHAY-RKKASTTAKILSQINAEMTIKASNLDKLDLFCQLETSLPLPSYQI 137 Query 124 EF--TAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLS-QWVDDY 180 ++A +AA +R +W + + P+ +LT +E AG +F +F IDG+S Q + Sbjct 138 HINVSSAAEAALNLRKEWDLGLNPIEDLTGLIEKAGVFIFYCNFEEDHIDGVSLQTQNSP 197 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATAFAAEFLMPESEIRPELRR 240 P + +NAN DR R TLAHELGHL+LH P+ +ME EA FAAEFL+P ++ +L+ Sbjct 198 PCIFLNANQPNDRIRFTLAHELGHLILHKYAPSIDMEEEANEFAAEFLIPTEAVQGQLQT 257 Query 241 LDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVRE 300 +L K W VSM AL+ ++ +G +S L++ M+ G++ EP S+ RE Sbjct 258 TNLKTYATHKLFWKVSMAALIVKSKHIGEISDRQSATLWRQMSMYGYRKAEP--YSLERE 315 Query 301 KPSLPAHIGM 310 P A + M Sbjct 316 HPQRFAKLMM 325 >gi|237716235|ref|ZP_04546716.1| DNA-binding helix-turn-helix protein [Bacteroides sp. D1] Length=357 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/297 (32%), Positives = 147/297 (50%), Gaps = 20/297 (6%) Query 8 LAVARKARGLTQIELA-ELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 + AR+ RG +Q ELA ++VGL+Q +++YE G ++ ++ + LG D Sbjct 12 IIFAREYRGYSQTELASKIVGLSQSNLSKYEKGIGPLSTDVLNRIIDFLGFPTDFY---E 68 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLL-----RVHASFLFEEVAINSEQHVPAF 121 + +A +AH RR K + Q++ LL ++ S F +++ + Sbjct 69 KKISNIAENAHYRRKKGMTKNERSQIDLSNKLLGYIVDQMGESVEFPDMSFRMIDLEDGY 128 Query 122 DPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD-Y 180 PE A+ R + PV N+ +E G ++ E D+ DG+S D Y Sbjct 129 TPE-----TVAQYTRKYLGLKDEPVRNIFSLLERNGIIIIELDYDVDLFDGVSFLTDGGY 183 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNP-----TENMETEATAFAAEFLMPESEIR 235 V++IN N + D KR TLAHELGHL++H++N + E EA FA+EFLMP I Sbjct 184 YVIIINKNFSNDHKRFTLAHELGHLIMHTSNEFLISEYRDKEDEANRFASEFLMPSDAIS 243 Query 236 PELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 LR L L L+ELKR W SM +++ RA + ++ E ++ RG++ EP Sbjct 244 NSLRGLKLQYLVELKRYWLTSMASIVRRAKDLKCITNEKYKYFSIELSRRGYRKSEP 300 >gi|313669549|ref|YP_004049974.1| hypothetical protein Sulku_2772 [Sulfuricurvum kujiense DSM 16994] gi|313156746|gb|ADR35421.1| protein of unknown function DUF955 [Sulfuricurvum kujiense DSM 16994] Length=354 Score = 139 bits (350), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 93/302 (31%), Positives = 151/302 (50%), Gaps = 17/302 (5%) Query 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 G+ +A ARK GL+ LA+ VG++Q AI +YE PD ++ KL++ LGV Sbjct 2 FGERIARARKTAGLSLRGLADQVGVSQTAIAKYEKNQIHPDSQMLLKLSQALGVKSGYFF 61 Query 64 HGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQH------ 117 R + R+ + +E ++ L ++ E + S H Sbjct 62 ---RQQSVTLSKPEYRKKSSISQKQLDIIEGKI-LDQIERRLELEALFPKSPVHPFALVE 117 Query 118 -VPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFE-EDFATQRIDGLSQ 175 +P+ + E A VR +W++ M P+ L +E+ G VF+ ED + DGL Sbjct 118 GLPSVIGSYEDIEAIAEAVRNEWKLGMNPIPELIDVLESHGIRVFQVEDDGDGKFDGLMA 177 Query 176 WVDDYPVMLINANAAPDRKRLTLAHELGHLVLHS-TNPTENMETEATAFAAEFLMPESEI 234 V ++PV++I++ + DR+R T+AHELGHL++H N N E FA L+P+ + Sbjct 178 HVGEHPVVVISSKWSGDRQRFTMAHELGHLLMHGRLNEGLNEEKACHRFAGALLVPKVAV 237 Query 235 RPEL----RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTK 290 + EL +L+ +LL LK+E+G+SM A L RAY +G++ + + RGW+ Sbjct 238 QDELGTFRTKLEYRELLLLKQEYGISMSAALRRAYDLGIIKESYYKHVVIDFSQRGWRKN 297 Query 291 EP 292 EP Sbjct 298 EP 299 >gi|262407843|ref|ZP_06084391.1| DNA-binding helix-turn-helix protein [Bacteroides sp. 2_1_22] gi|294643944|ref|ZP_06721731.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|262354651|gb|EEZ03743.1| DNA-binding helix-turn-helix protein [Bacteroides sp. 2_1_22] gi|292640716|gb|EFF58947.1| DNA-binding protein [Bacteroides ovatus SD CC 2a] gi|345454122|gb|EEO49673.2| DNA-binding helix-turn-helix protein [Bacteroides sp. D1] Length=353 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 93/297 (32%), Positives = 147/297 (50%), Gaps = 20/297 (6%) Query 8 LAVARKARGLTQIELA-ELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 + AR+ RG +Q ELA ++VGL+Q +++YE G ++ ++ + LG D Sbjct 8 IIFAREYRGYSQTELASKIVGLSQSNLSKYEKGIGPLSTDVLNRIIDFLGFPTDFY---E 64 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLL-----RVHASFLFEEVAINSEQHVPAF 121 + +A +AH RR K + Q++ LL ++ S F +++ + Sbjct 65 KKISNIAENAHYRRKKGMTKNERSQIDLSNKLLGYIVDQMGESVEFPDMSFRMIDLEDGY 124 Query 122 DPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD-Y 180 PE A+ R + PV N+ +E G ++ E D+ DG+S D Y Sbjct 125 TPE-----TVAQYTRKYLGLKDEPVRNIFSLLERNGIIIIELDYDVDLFDGVSFLTDGGY 179 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHSTNP-----TENMETEATAFAAEFLMPESEIR 235 V++IN N + D KR TLAHELGHL++H++N + E EA FA+EFLMP I Sbjct 180 YVIIINKNFSNDHKRFTLAHELGHLIMHTSNEFLISEYRDKEDEANRFASEFLMPSDAIS 239 Query 236 PELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 LR L L L+ELKR W SM +++ RA + ++ E ++ RG++ EP Sbjct 240 NSLRGLKLQYLVELKRYWLTSMASIVRRAKDLKCITNEKYKYFSIELSRRGYRKSEP 296 >gi|254384564|ref|ZP_04999904.1| DNA-binding protein [Streptomyces sp. Mg1] gi|194343449|gb|EDX24415.1| DNA-binding protein [Streptomyces sp. Mg1] Length=389 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 110/321 (35%), Positives = 167/321 (53%), Gaps = 33/321 (10%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L AR+ +T+ ++A +G+T A+ +YE+G P ++ +LAEILGV + G Sbjct 31 LTQARRLAEMTKKDVATQLGVTPAAVGQYETGVSKPRPDLIPRLAEILGVPVTFFLLG-- 88 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFE-EVAINSEQHVPAFD-PEF 125 R A +DA M ++ +++ Q E L A ++E A+ +P D P F Sbjct 89 -RPANRLDASMAHFRSLRSTPKSQRERALAF----AEQVWELTYALEQRIQLPLVDLPGF 143 Query 126 TAAE------------DAARLVRAQWRMPMGPVVNLTRWMEAAGCLVF---EEDFATQRI 170 E AAR +R +W + GPV +L R ME+ G +V D + + Sbjct 144 AGGEVHPGEELSTDPASAARELRKRWGLGDGPVTHLVRRMESHGIVVVMPPASDPSAASV 203 Query 171 DGLSQWVDDYPVMLINANAAPD--RKRLTLAHELGHLVLHSTNPTEN-METEATAFAAEF 227 D S P++++ AN A D R R T AHELGHLVLH ++ E EA AFAAEF Sbjct 204 DAFSTRA-ARPLVVLTANRADDIYRHRFTAAHELGHLVLHGDATGDSRQEKEADAFAAEF 262 Query 228 LMPESEIRPEL-RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLY---KAMN 283 L P+S I P L RR+D+ +L EL+ WGVS+Q+L+ R +GL+S ++ Y +A++ Sbjct 263 LTPQSSILPLLPRRMDIARLAELRGVWGVSLQSLVYRCRELGLISDATASRTYQRLRALD 322 Query 284 ARGWKTKEPGIESIVREKPSL 304 + T E + + E+PSL Sbjct 323 GQPGFTPE-SVSNFSGEQPSL 342 >gi|345471325|dbj|BAK72775.1| conserved hypothetical protein [Arcobacter sp. L] Length=351 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 92/304 (31%), Positives = 155/304 (51%), Gaps = 16/304 (5%) Query 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 G+ L ARKA GL+ L +LVG++Q AI++YE PD ++ KL++ L V + Sbjct 2 FGERLERARKAAGLSLRALGDLVGVSQTAISKYEKDIITPDSKMIIKLSDALNVKIEYFF 61 Query 64 HGNRFRGALAVDAHMRRHKTTK------ASAWRQLEARLNLLRVHASFLFEEVAINSEQH 117 +F +L + +R T K A ++E R L + + SE Sbjct 62 RPKKFTFSLENVEYRKREITQKNLDLINAKILDKIEKRFELESFFPKLPNDTFKLPSE-- 119 Query 118 VPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEED-FATQRIDGLSQW 176 +P + + A VR+ W++ + P+ ++ E+ G VF+ D DGL+ Sbjct 120 LPKIIYTYEEIDAIADEVRSFWKLGLNPIPDVIDVFESNGIRVFDIDENIDNNFDGLATS 179 Query 177 VDDYPVMLINANAAPDRKRLTLAHELGHLVL-HSTNPTENMETEATA--FAAEFLMPESE 233 ++ +++I+ DR+R TLAHELGH+VL + N + M+ E A FA FL+P+ Sbjct 180 IEGKHIIVISKGWPGDRQRFTLAHELGHIVLANRLNKSIEMDDEKAANRFAGAFLLPKYA 239 Query 234 IRPEL----RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKT 289 I+ EL +++ +L LK+E+G+SMQ RAY+ ++ + + L++ ++GW Sbjct 240 IKEELGESRNFIEIQELSLLKQEYGISMQGAFIRAYQTNIIEQKQYSILWRMFKSKGWLE 299 Query 290 KEPG 293 KEPG Sbjct 300 KEPG 303 >gi|334196918|gb|AEG70103.1| conserved hypothetical protein [Ralstonia solanacearum Po82] Length=400 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 164/350 (47%), Gaps = 42/350 (12%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI---- 63 L AR RGLTQ LA VG + ++++E GD+ P+ + +L++ LG+ + Sbjct 13 LIQARLCRGLTQTALAAKVGKSSGTVSKWEKGDQVPESEALQRLSDHLGMPTSWFLTALP 72 Query 64 -HGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVA--------INS 114 +G++ + A + +T + RL L + L + V + + Sbjct 73 SYGDKVCFYRSTAAVTKEAQTIA-------DIRLKWLNEISLVLQDWVDWPTVNIPRLGA 125 Query 115 EQHVPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLS 174 H+ D + E AA+ R QW + +GP+ ++ +E AG + E+ R+DG S Sbjct 126 NDHLKITDADI---EQAAQACRRQWNLGLGPISDMVLVLENAGVICVREELGYTRMDGAS 182 Query 175 QW--VDDYPVMLINANAAPD-RKRLTLAHELGHLVLH-STNPTENM------ETEATAFA 224 QW D P + + A+ A R R AHELGHLVLH + E M E +A FA Sbjct 183 QWFDTDGRPYVFLAADKANGVRSRFDAAHELGHLVLHRDIDDVEFMKRYPEIERQAHLFA 242 Query 225 AEFLMPESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNA 284 A FL+P E+ R L L LK W VS+ A++ R ++G++ T+L+K +A Sbjct 243 AAFLLPAETFAAEMIRPSLDTFLALKLRWKVSVAAMIMRCRQLGIIDDAYATRLWKNYSA 302 Query 285 RGWKTKEP-----GIESIVREKPSLPAHIGMTLRSRGFTDQQAAAIAGYA 329 RGW+ EP G ES+ LP I + L G T + A G++ Sbjct 303 RGWRKGEPLDDRLGFESV----RLLPRTINLLLSEGGLTKEGLLASVGFS 348 >gi|261881202|ref|ZP_06007629.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332071|gb|EFA42857.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length=353 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/309 (32%), Positives = 147/309 (48%), Gaps = 26/309 (8%) Query 1 MNGLGDVLAVARKARGLTQIELAE-LVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTD 59 MN L AR+ RG TQ ELA +VGL+Q ++++E G ++ ++ E LG + Sbjct 1 MNISPKQLTFAREYRGYTQSELASRIVGLSQSNLSKFEKGIEVLSDEVLKRIIEFLGFPE 60 Query 60 ---DLLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLL-----RVHASFLFEEVA 111 L I N +AH RR +E L+ ++ S F Sbjct 61 GFYTLSISNN------VENAHYRRKSGMTKRTKEDIEKSNKLIGYIVDQMADSIDFPTFT 114 Query 112 INSEQHVPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRID 171 + + F PE+ AA+ R + G V + +E G ++ E+ + + D Sbjct 115 LKTIDLEDDFTPEY-----AAQFTRRYMGIIQGTVKEICTMLERYGIIIVEQTYDKENFD 169 Query 172 GLSQWVDD-YPVMLINANAAPDRKRLTLAHELGHLVLHSTNP-----TENMETEATAFAA 225 G+S D PVM+IN + + DRKRLT+AHELGH+V+H + + E EA FA+ Sbjct 170 GVSFLTDKGIPVMVINRDFSNDRKRLTIAHELGHIVMHLSREFAIPEYRDKEDEAFRFAS 229 Query 226 EFLMPESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNAR 285 EFLMPE EIR L L L L+ LK W SM A++ RA+ +G + L ++ Sbjct 230 EFLMPEKEIRNSLYGLRLSSLMPLKLHWLTSMAAIIRRAWSLGCIDKNRYQYLNIELSRH 289 Query 286 GWKTKEPGI 294 +K EPG+ Sbjct 290 HYKKHEPGM 298 >gi|341576429|gb|EGS26840.1| transcriptional regulator [Streptococcus agalactiae FSL S3-026] gi|341578065|gb|EGS28462.1| transcriptional regulator [Streptococcus agalactiae FSL S3-026] Length=377 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 93/315 (30%), Positives = 157/315 (50%), Gaps = 21/315 (6%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L AR ARGLT+ ELAE G+++ I+ YE G P +KL I+ D + Sbjct 11 LTKARIARGLTKKELAERTGISRQMISNYELGKTHPG---ASKLMTIVAELDFPYHYFTS 67 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEA-RLNLLRVHASFL-----FEEVAINSEQHVPAF 121 + A R ++ R ++A RL + L F E+ + + Sbjct 68 ESKSFYEGATFFRSQSAATKRARDMQAVRLEFQKEIYDLLSRYVNFPELTLPDILMKNIY 127 Query 122 DPEFTAAEDAARLVRAQWRMPMG-PVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 D E+ A+ +R+ W + P+ NL E G +V E + + ++D +S+W++D Sbjct 128 DITNKDIEEKAKELRSLWGLGKELPIYNLIESAEINGIIVVESNMSDDKLDAVSEWIEDR 187 Query 181 P-VMLINANAAPDRKRLTLAHELGHLVLH---------STNPTENM-ETEATAFAAEFLM 229 P +ML + + R+R +AHELGH++LH ++ +N+ E +A FA+ L+ Sbjct 188 PFIMLTDNGESAARRRFNVAHELGHILLHGDIESIHDYTSQELKNIIEKQANYFASCLLL 247 Query 230 PESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKT 289 PES L +L +ELK+ W VSMQ+++ R Y++ L++ + + L+K + WK Sbjct 248 PESGFLKSLLSTNLDFYIELKKYWKVSMQSMIMRTYQLDLINDDQKLYLFKKIGFNKWKK 307 Query 290 KEPGIESIVREKPSL 304 +EP + ++ EKPSL Sbjct 308 REPLDDELIPEKPSL 322 >gi|269928755|ref|YP_003321076.1| hypothetical protein Sthe_2842 [Sphaerobacter thermophilus DSM 20745] gi|269788112|gb|ACZ40254.1| protein of unknown function DUF955 [Sphaerobacter thermophilus DSM 20745] Length=372 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 103/323 (32%), Positives = 152/323 (48%), Gaps = 8/323 (2%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L +ARK RGL+ LAE VGL++ +I YE G P H +A +A+ LG GN Sbjct 15 LTLARKRRGLSISALAERVGLSRRSIFNYERGRSVPGDHTLATIAQTLGFPITFFF-GND 73 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDPEFTA 127 L+ DA R + +A R + L + +E +P E T Sbjct 74 IE-ELSPDAVSFRAMSKMTAAQRDMALAEGALALLIDSWIDERFELPPVDLPDLSHE-TD 131 Query 128 AEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDYPVMLINA 187 E AA +R W P+ N+ +E+ G VF ++ +D S W D P + +N Sbjct 132 PETAAIALRRYWGCGEWPIRNMVHLLESKGVRVFSLSVQSREVDAFSMWKDSTPYVFLNT 191 Query 188 NAAPDRKRLTLAHELGHLVL--HSTNPTENMETEATAFAAEFLMPESEIRPELRR-LDLG 244 + +R R AHELGHLVL H+ ++E EA AFA+ FLMP + + RR + Sbjct 192 QKSAERSRFDAAHELGHLVLHQHAIGRGRSLEQEANAFASAFLMPRASVLAYARRTYTVA 251 Query 245 KLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPGIESIVREKPSL 304 L++LK+ WGVS+ AL R + +GL+S +L+ + A+ + KEP + RE + Sbjct 252 TLIQLKKIWGVSVTALAHRLHALGLLSDWQYRRLWMDIAAKRYNVKEP--DPAPRETSQV 309 Query 305 PAHIGMTLRSRGFTDQQAAAIAG 327 + L G T AA G Sbjct 310 FEKVFRALGEEGITKAHVAADLG 332 >gi|329577286|gb|EGG58747.1| DNA-binding helix-turn-helix protein [Enterococcus faecalis TX1467] Length=377 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 97/315 (31%), Positives = 153/315 (49%), Gaps = 21/315 (6%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L AR +RGLT ELAE GL++ I+ YESG + KL +L ++ Sbjct 12 LTSARISRGLTMKELAEKSGLSRQMISNYESGKTIQKAESLLKLLSVLNFPRSFF---SK 68 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEA-RLNLLRVHASFLFEEVAINSEQHVPAFDPEFT 126 L A R ++ R ++ RL L S L V + + D E Sbjct 69 ETSELTTGATFFRSQSASTKRVRDMQKERLKYLFDVYSRLSSYVNFPNLRMPDVLDKEIY 128 Query 127 AAEDA-----ARLVRAQWRMPMG-PVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 +A A +R +W + P+ NLT+ E G L+ E + + +D +S+W+ D Sbjct 129 DITEADIIEKAYQLREKWNLGANLPIDNLTQVAEKNGILIAEANMSDTTLDAVSRWIIDR 188 Query 181 P-VMLINANAAPDRKRLTLAHELGHLVLH---------STNPTENM-ETEATAFAAEFLM 229 P +ML + + + R+R +AHELGH++LH S +N+ E +A FA+ FL+ Sbjct 189 PFIMLTDNSESAVRRRFNIAHELGHILLHNSIESIHDYSAQDLKNIIEKQANLFASHFLL 248 Query 230 PESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKT 289 P L L ++LK+ WGVS+QA++ + Y +GL++ + R L K ++A W+T Sbjct 249 PSEAFSDSLLSTSLDYYVDLKKYWGVSIQAMIYKTYLLGLINDDQRLYLNKRISANKWRT 308 Query 290 KEPGIESIVREKPSL 304 KEP + + EKP L Sbjct 309 KEPYDDILPVEKPKL 323 >gi|239990435|ref|ZP_04711099.1| hypothetical protein SrosN1_24213 [Streptomyces roseosporus NRRL 11379] Length=392 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/320 (32%), Positives = 157/320 (50%), Gaps = 33/320 (10%) Query 5 GDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIH 64 G L +AR+ GL + LA + + A+ YES + P VA+L LGV + Sbjct 20 GRRLTLARQLAGLRKNALAAQIDKSPTAVAAYESNSKRPAPATVAQLCLTLGVDPSFFLP 79 Query 65 GNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINS----EQHVPA 120 G + A + H R ++T L+R A F + VA + E+HV Sbjct 80 GAQRPEAGSSVPHFRSLRSTS-----------QLVRDQA-FAYGLVATDVGAALERHVEF 127 Query 121 FDPEFT------------AAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQ 168 +P+ E AA+L+R W +P GP+ +L R E G LV T Sbjct 128 PNPDIPRLSVDVEDEQTDLPEQAAKLLRKHWDIPTGPIGHLVRMAENRGVLVVYSPSQTA 187 Query 169 RIDGLSQWVDDYPVMLINANAAPD-RKRLTLAHELGHLVLH-STNPTENM-ETEATAFAA 225 +D S D+ P +++N R+R +AHELGHLV+H + P + + E +A FAA Sbjct 188 AVDAYSFETDNRPTVVLNPTKNDYFRQRFDVAHELGHLVMHVDSEPGDRITENQANRFAA 247 Query 226 EFLMPESEIRPEL-RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNA 284 EFLMP ++R L + D L LK +W VS+QALL R+ ++G++S +++ Sbjct 248 EFLMPSDDMRDLLPSKADWRTLGALKADWNVSLQALLYRSRQLGVMSDVTYRNAVLYLSS 307 Query 285 RGWKTKEPGIESIVREKPSL 304 +GW+ +EPG+ + E+PSL Sbjct 308 KGWRRREPGVMPVT-EQPSL 326 >gi|291447444|ref|ZP_06586834.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] gi|291350391|gb|EFE77295.1| DNA-binding protein [Streptomyces roseosporus NRRL 15998] Length=386 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 102/320 (32%), Positives = 157/320 (50%), Gaps = 33/320 (10%) Query 5 GDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIH 64 G L +AR+ GL + LA + + A+ YES + P VA+L LGV + Sbjct 14 GRRLTLARQLAGLRKNALAAQIDKSPTAVAAYESNSKRPAPATVAQLCLTLGVDPSFFLP 73 Query 65 GNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINS----EQHVPA 120 G + A + H R ++T L+R A F + VA + E+HV Sbjct 74 GAQRPEAGSSVPHFRSLRSTS-----------QLVRDQA-FAYGLVATDVGAALERHVEF 121 Query 121 FDPEFT------------AAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQ 168 +P+ E AA+L+R W +P GP+ +L R E G LV T Sbjct 122 PNPDIPRLSVDVEDEQTDLPEQAAKLLRKHWDIPTGPIGHLVRMAENRGVLVVYSPSQTA 181 Query 169 RIDGLSQWVDDYPVMLINANAAPD-RKRLTLAHELGHLVLH-STNPTENM-ETEATAFAA 225 +D S D+ P +++N R+R +AHELGHLV+H + P + + E +A FAA Sbjct 182 AVDAYSFETDNRPTVVLNPTKNDYFRQRFDVAHELGHLVMHVDSEPGDRITENQANRFAA 241 Query 226 EFLMPESEIRPEL-RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNA 284 EFLMP ++R L + D L LK +W VS+QALL R+ ++G++S +++ Sbjct 242 EFLMPSDDMRDLLPSKADWRTLGALKADWNVSLQALLYRSRQLGVMSDVTYRNAVLYLSS 301 Query 285 RGWKTKEPGIESIVREKPSL 304 +GW+ +EPG+ + E+PSL Sbjct 302 KGWRRREPGVMPVT-EQPSL 320 >gi|222101967|ref|YP_002546557.1| transcriptional regulator, HTH_3 family [Agrobacterium radiobacter K84] gi|221728084|gb|ACM31093.1| transcriptional regulator, HTH_3 family [Agrobacterium radiobacter K84] Length=359 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/326 (32%), Positives = 148/326 (46%), Gaps = 38/326 (11%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILG------VTDDL 61 L VAR+ GLT ELA VG+ A+ YE+G+ P + KL+ IL + DD+ Sbjct 7 LTVARQRAGLTMKELASKVGIEPRAVTGYEAGEYLPSEETARKLSRILQFPLSFFMLDDV 66 Query 62 LI---HGNRFRGALAVDAHMRRHKTTKA------SAWRQLEARLNLLRVHASFLFEEVAI 112 I G FR + A R S W +E L + V Sbjct 67 DIPRPEGVSFRSMSKMTARQRDGAVAAGAIAFMLSDWLDIEFDLPVASVP---------- 116 Query 113 NSEQHVPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDG 172 + + P + AA +R W + P+ N+ +E G VF + +D Sbjct 117 DMREDTP---------QSAAAGLRDFWALGNRPIKNMVHLLELKGVRVFSLGEDGKEVDA 167 Query 173 LSQWVDDYPVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETE--ATAFAAEFLMP 230 S W DD P + +N+ + +R R AHELGHLVLH +E E A FAA FLMP Sbjct 168 FSVWRDDRPYIFLNSQKSAERSRFDAAHELGHLVLHKHAAPNGLEAEKQANEFAAAFLMP 227 Query 231 ESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTK 290 E+ +R R L K++ELK W VS+ A+ R + +GL S +L+ ++ RGW+T Sbjct 228 EAPLRAVGRITGLPKVVELKSAWSVSVAAMTYRLHELGLASKWTYQQLFMEISRRGWRTD 287 Query 291 EPGIESIVREKPSLPAHIGMTLRSRG 316 EP + I RE+ + + LR G Sbjct 288 EP--KPIRREQSQVWKKVLDDLRQNG 311 >gi|333372902|ref|ZP_08464823.1| transcriptional regulator with an addtional conserved domain protein [Desmospora sp. 8437] gi|332971256|gb|EGK10219.1| transcriptional regulator with an addtional conserved domain protein [Desmospora sp. 8437] Length=386 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 97/320 (31%), Positives = 149/320 (47%), Gaps = 21/320 (6%) Query 2 NGLGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDL 61 N + + L R+ARGLT EL+E VG++ +I++YE+G P + KL L + Sbjct 9 NFIPERLREGREARGLTIQELSERVGVSHQSISKYENGKAVPSGMVFQKLLFTLNLPIHF 68 Query 62 L---IHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLR-----VHASFLFEEVAIN 113 IH RG R T + + + E ++N L+ + F +V I Sbjct 69 FYKPIH----RGIEDSVVFFRSKAATTSRSKKLHEIKINWLQDISVELEKILDFPKVLIP 124 Query 114 SEQHVPAFDP-EFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDG 172 P + P + ++ A VR W + GP+ N+ +E G + DF Q++D Sbjct 125 KINTSPIYFPTDMDDIDELAVEVRRSWGLGNGPISNVLLLVEKKGVIAARADFNDQKVDA 184 Query 173 LSQWVDDY-PVMLINANAAPDRKRLTLAHELGHLVLHST---NPTEN----METEATAFA 224 S W DD P +L+ + R R +AHELGHLVLHS N E +E+EA FA Sbjct 185 CSVWRDDQRPFILLGTEKSSVRSRFDVAHELGHLVLHSNLKRNEFEKNMKLIESEADRFA 244 Query 225 AEFLMPESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNA 284 + FLMP E L L+ LK+ W VS+QA+ RA + ++S + + + Sbjct 245 SAFLMPVESFSSEFVSTSLEYLINLKKRWKVSIQAMAYRARDLDIISEFQYRNIMRKIGQ 304 Query 285 RGWKTKEPGIESIVREKPSL 304 W+ EP E E+P++ Sbjct 305 NNWRKHEPLDEQFELEQPTV 324 >gi|332360443|gb|EGJ38254.1| cro/CI family zinc-binding transcriptional regulator [Streptococcus sanguinis SK355] Length=377 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/344 (29%), Positives = 165/344 (48%), Gaps = 22/344 (6%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L AR ARGLT+ ELAE G+++ I+ YE G P +KL I+ D + Sbjct 11 LTKARIARGLTKKELAERTGISRQMISNYELGKTHPG---ASKLMTIVAELDFPYTYFTS 67 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEA-RLNLLRVHASFL-----FEEVAINSEQHVPAF 121 A R ++ R ++A RL + L F E+ + + Sbjct 68 EPKRFYEGATFFRSQSAATKRARDMQAVRLEFQKEIYDLLSQYVNFPELTLPDILTKTIY 127 Query 122 DPEFTAAEDAARLVRAQWRMPMG-PVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 D E+ A+ +R W + P+ NLT E G +V E + + ++D +S+W++D Sbjct 128 DITDNDIEEKAKELRELWGLGKDIPISNLTEIAEVNGIIVVESNMSDDKLDAVSEWIEDR 187 Query 181 P-VMLINANAAPDRKRLTLAHELGHLVLH---------STNPTENM-ETEATAFAAEFLM 229 P +ML + + R+R +AHELGH++LH ++ +N+ E +A FA+ L+ Sbjct 188 PYIMLTDNGESAVRRRFNIAHELGHILLHGDIESIHDYTSQELKNIIERQANYFASCLLL 247 Query 230 PESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKT 289 PE+ L +L +ELK+ W VS+Q+++ R Y++ L++ + + L+K + WK Sbjct 248 PENGFLKSLLSTNLDFYIELKKYWKVSIQSMIMRTYQLELINDDQKLYLFKKIGFNKWKK 307 Query 290 KEPGIESIVREKPSLPAHIGMTLRSRGFTDQQAAAIAGYANPAD 333 +EP + + EKPSL + + S Q+ I+ + P D Sbjct 308 REPLDDELTPEKPSLYRKVFDLIISNDIL-QKNELISNLSLPKD 350 >gi|320536515|ref|ZP_08036545.1| helix-turn-helix protein [Treponema phagedenis F0421] gi|320146641|gb|EFW38227.1| helix-turn-helix protein [Treponema phagedenis F0421] Length=369 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 101/350 (29%), Positives = 168/350 (48%), Gaps = 38/350 (10%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLL----I 63 L AR T LA ++G+T+ +++ YE G R+PD + +LAE LG + Sbjct 9 LTQARNWNNYTLDYLAGMLGVTKASVSLYEKGARNPDAFVQIRLAEALGFPIEFFYKPSF 68 Query 64 HGNRFRGALAVDAHMRRHKTTKASAWRQLEAR-LNLLRVHASF---LFEEVAINSEQHVP 119 + R + ++ ++ + +A +Q + +L + SF + + I+ E+ + Sbjct 69 DTSNARISYRKNSSTKKKEKQRAELLKQFSIEFIAMLSGYVSFKESTIKPIDISCEE-LS 127 Query 120 AFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD 179 + D ED A +R + +GP+ NL ++E G ++F D + IDG S Sbjct 128 SED-----IEDVAVTLRKTFNAGLGPIQNLMIFLENRGAIIFLYDNSIIEIDGFSCMYAS 182 Query 180 YPVMLINANAAPDRKRLTLAHELGHLVLHS-TNPTEN--------METEATAFAAEFLMP 230 P + IN + DR R TLAHELGH++LHS + T+ +E +A FA FL P Sbjct 183 QPFIYINTDYPWDRMRFTLAHELGHIILHSGIDETKTQSFDFYKMIERQANVFAGAFLFP 242 Query 231 ESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTK 290 + R E R +D LLE K++WG+S A++ RA+ + L+ + + + R + + Sbjct 243 KESFRREFRGIDNRFLLETKKKWGLSKAAIVKRAHSLKLIGDTQKISFFTGQSRRKERKE 302 Query 291 EPGIESIVREKPS-----------LPAHI-GMTLRSR-GFTDQQAAAIAG 327 E G S +REK + L HI +L SR GF+D+ I+ Sbjct 303 EEG--SKIREKEAPFLVKTVVNTLLEQHIDSYSLISRCGFSDELLQIISA 350 >gi|268318350|ref|YP_003292068.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] gi|262335884|gb|ACY49680.1| helix-turn-helix domain protein [Rhodothermus marinus DSM 4252] Length=347 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 101/314 (33%), Positives = 159/314 (51%), Gaps = 26/314 (8%) Query 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 +G + AR +GL+ +LA+ VG++Q AI++YE G PD ++ +LA L V + Sbjct 3 IGARIKQARIRQGLSLRKLAKEVGVSQTAISKYEKGVITPDSQMLIRLARALDVKPSFFL 62 Query 64 HGNR-------FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQ 116 R +R A+ ++R + W LE L+L+ + L A + + Sbjct 63 RPVRVERIKPIYRKRSALGKKVQRQIVEQVRIW--LEGYLDLIFIVEGSL---PAFSWPE 117 Query 117 HVPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQW 176 P E AA+ +R W++ +GP+ NLT +E +V + D A + DG S Sbjct 118 GFPRVVASMEDVEQAAQDLREMWKVGVGPIENLTELLEDHQIIVGQID-APEGFDGCSFL 176 Query 177 VD---DYPVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENMETEATA--FAAEFLMPE 231 + D PV++ DR+R +LAHELGHL+L +P +N+ E A FA FL+P Sbjct 177 AEIDGDVPVIVTRRGMPGDRQRFSLAHELGHLML---SPEKNLNAERVAHRFAGAFLVPA 233 Query 232 SEIRPEL----RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGW 287 ++ L RR+ L +L LK +GVSMQAL+ RA+ + ++S L K ++GW Sbjct 234 DALKRYLDVRRRRISLAELHLLKHYFGVSMQALVRRAFDLDIISKVHYIGLMKKFRSQGW 293 Query 288 KTKEPGIESIVREK 301 +EPG E + EK Sbjct 294 HREEPG-EPVQEEK 306 >gi|120400369|gb|ABM21424.1| transcriptional regulator [Lactobacillus johnsonii] gi|120400393|gb|ABM21447.1| transcriptional regulator [Lactobacillus johnsonii] Length=374 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/324 (30%), Positives = 154/324 (48%), Gaps = 37/324 (11%) Query 5 GDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGV------- 57 G L AR R +T +LAE +G+T+ I+RYE +P K+ L Sbjct 5 GTRLKEARYFRKMTITDLAEKIGVTKQMISRYERETGEPSLETFQKIVSALKFPVNFFTE 64 Query 58 --TDDLLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSE 115 +++ G +R L +R S + Q A + FE + E Sbjct 65 SDSNNFCSQGTFYRSRLTATQTEKR-----PSEFYQKAA------CYIRDYFETMIEFPE 113 Query 116 QHVPAFDPEFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQ 175 +P FD F + E+AA +R WR+ P+ N+ R +E G +++ + +++++ S Sbjct 114 --LPKFDRSFDSPEEAANYIRKIWRLGATPIPNMIRLLEEHGMIIYIAENDSKKVNAHSG 171 Query 176 WVD----DYPVMLINANAAPD-RKRLTLAHELGHLVLHS-TNPT-------ENMETEATA 222 W++ Y ++ +++N+ ++ +LAHELGH VLHS NP ME EA Sbjct 172 WMNIGDRAYFIIALDSNSNNFFNQQFSLAHELGHYVLHSGVNPQIIEKEEYRKMEQEAEE 231 Query 223 FAAEFLMPESEIRPELRRL--DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYK 280 FA+ FL+P + + DL + LK +W SM A++ RA + L+ A+ +KL K Sbjct 232 FASCFLLPSDMFKKSICNFENDLEHYIALKFKWYTSMNAMVVRARHLRLIDADTYSKLQK 291 Query 281 AMNARGWKTKEPGIESIVREKPSL 304 ++ R W+ KEPG E I KP + Sbjct 292 RISYRKWRKKEPGDEKIKLMKPQV 315 >gi|332882633|ref|ZP_08450245.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679433|gb|EGJ52418.1| DNA-binding helix-turn-helix protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length=352 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/335 (30%), Positives = 167/335 (50%), Gaps = 30/335 (8%) Query 8 LAVARKARGLTQIELAELV-GLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGN 66 L +AR+ RG TQ +L++ V GL+Q ++++E G I+ K+ +L + Sbjct 8 LTLAREYRGWTQTKLSKAVQGLSQSNLSKFEKGLGGLSDEILEKIFNVLKFPKEF----- 62 Query 67 RFRGALAVD---AHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFDP 123 F ++VD ++ R+ T S ++ E + ++ +E++ NS + P F Sbjct 63 -FERKISVDLETSNYRKKNTIPKSIIQEFETSC----IFIGYIIDEMS-NSIDY-PDFSL 115 Query 124 EFTAAEDA------ARLVRAQWRM-PMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQW 176 + ED A+ R +R+ P+ ++ R +E G +++E + A ++ DG+S + Sbjct 116 KTLDIEDGYTPEYIAQFTRKDFRIFDNEPIEDIFRIIEDKGIIIYELN-ANEKFDGISLF 174 Query 177 VDD-YPVMLINANAAPDRKRLTLAHELGHLVLHSTNPTENM---ETEATAFAAEFLMPES 232 +PV+++N DRKR TLAHELGHL++H+ P N+ E EA FA+EFLMPE Sbjct 175 TKKGFPVVVLNKRLPNDRKRFTLAHELGHLIMHTAFPVPNVRDKEQEANDFASEFLMPER 234 Query 233 EIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 IR L L L L LK W S +++ RAY +G+++ ++ G K E Sbjct 235 AIRNSLEGLKLSSLSALKSYWLTSKASIIRRAYSLGVINQNKYKYFNIELSRIGEKKNEK 294 Query 293 GIESIVREKPSLPAHIGMTLRSRGFT-DQQAAAIA 326 G SI E + + + L+ +T D A A A Sbjct 295 GSVSI-DEAITFDMAVKLHLKELEYTYDDLANAFA 328 >gi|322375254|ref|ZP_08049767.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] gi|321279517|gb|EFX56557.1| zinc-binding transcriptional regulator, Cro/CI family [Streptococcus sp. C300] Length=377 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 94/344 (28%), Positives = 168/344 (49%), Gaps = 22/344 (6%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L AR ARGLT+ ELAE G+++ I+ YE G P +KL I+ D + Sbjct 11 LTKARIARGLTKKELAERTGISRQMISNYELGKTHPG---ASKLMTIVAELDFPYAYFTS 67 Query 68 -----FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFL-FEEVAINSEQHVPAF 121 + GA + K + +LE + + + + ++ F E+ + + Sbjct 68 EPKRFYEGATFFRSQSAATKRARDMQAVRLEFQKEIYDLLSQYVNFPELTLPDILTKTIY 127 Query 122 DPEFTAAEDAARLVRAQWRMPMG-PVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDY 180 D E+ A+ +R W + P+ NLT E G +V E + + ++D +S+W++D Sbjct 128 DITNNDIEEKAKELRELWGLGKDIPISNLTEIAEVNGIIVVESNMSDDKLDAVSEWIEDR 187 Query 181 P-VMLINANAAPDRKRLTLAHELGHLVLH---------STNPTENM-ETEATAFAAEFLM 229 P +ML + + R+R +AHELGH++LH ++ +N+ E +A FA+ L+ Sbjct 188 PYIMLTDNGESAVRRRFNIAHELGHILLHGDIESIHDYTSQELKNIIENQANYFASCLLL 247 Query 230 PESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKT 289 PE+ L +L +ELK+ W VS+Q+++ R Y++ L++ + + L++ + WK Sbjct 248 PENGFLKSLLSTNLDFYIELKKYWKVSIQSMIMRTYQLELINDDQKLYLFRKIGFNKWKK 307 Query 290 KEPGIESIVREKPSLPAHIGMTLRSRGFTDQQAAAIAGYANPAD 333 +EP + + EKPSL + + S Q+ I+ + P D Sbjct 308 REPLDDELTPEKPSLYRKVFDLIISNDIL-QKNELISNLSLPKD 350 >gi|255324903|ref|ZP_05366012.1| helix-turn-helix domain protein [Corynebacterium tuberculostearicum SK141] gi|255298080|gb|EET77388.1| helix-turn-helix domain protein [Corynebacterium tuberculostearicum SK141] Length=364 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/295 (33%), Positives = 146/295 (50%), Gaps = 10/295 (3%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 LA AR+ GL + ELAELV +T A++ +E G + P++ + +LA L V + + + Sbjct 16 LAQARELNGLLKKELAELVSVTPAAVSSWERGSKTPNEDSIFRLANELEVEPEFFRNTSS 75 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPA--FDPEF 125 + H R K T + +Q + +L + E I E +P+ F E Sbjct 76 PLLNSSTPPHFRSLKATPQKSRKQAH-QFGVLAAIVTGTLERHLILPEPDLPSVNFPEED 134 Query 126 TAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDYPVMLI 185 E AA +R W + P+ +L E G +V + AT +D S WV +++ Sbjct 135 DQVEAAASRLRESWGLGSLPIRDLLLTTERKGVIVALNEEATANVDAYSMWVGGRAYIIL 194 Query 186 NANAAP-DRKRLTLAHELGHLVLHS-TNPTENM-ETEATAFAAEFLMPESEIRPEL---- 238 N R+R +AHELGHLV+H P E + E++A FA+EFL P S + PEL Sbjct 195 NPQKNDFYRQRFDIAHELGHLVMHEGAEPGETIAESQAHLFASEFLAPTSSLLPELPRSI 254 Query 239 RRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEPG 293 R KL ELK +WG+S+QALL R +R+ +S + ++ R W+ EPG Sbjct 255 NRQSWHKLFELKEKWGMSVQALLFRMHRLETISENSYRGAMTTLSRRKWRRAEPG 309 >gi|339009608|ref|ZP_08642180.1| hypothetical protein BRLA_c34270 [Brevibacillus laterosporus LMG 15441] gi|338774086|gb|EGP33617.1| hypothetical protein BRLA_c34270 [Brevibacillus laterosporus LMG 15441] Length=387 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 88/312 (29%), Positives = 149/312 (48%), Gaps = 17/312 (5%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLIHGNR 67 L AR+ARGLT EL+ELVG++ AI+++E G P + ++++ L + ++ Sbjct 16 LTDAREARGLTLKELSELVGVSHQAISKFEKGATTPSSQTLERISDTLTMPIHYFFSNSK 75 Query 68 FRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFL-----FEEVAINSEQHVPAFD 122 +V R + + R+N +++ +L F E+ I ++ Sbjct 76 EATEDSV-VFFRSRAAATVKSKKIHSKRINWVKIIHKYLDDILEFPELDIPKYNVSDVYE 134 Query 123 P-EFTAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDD-Y 180 P F ++ A VR +W + GP+ N+ +E G ++ FA +ID S+W +D Sbjct 135 PIAFEEIDEIANTVRKKWGLGDGPISNILLLLEKKGAIISRATFADYKIDACSRWENDER 194 Query 181 PVMLINANAAPDRKRLTLAHELGHLVLHST------NPTEN---METEATAFAAEFLMPE 231 P + + + R R +AHELGHL+LH N N +E EA FA+ FL+P Sbjct 195 PYIFLGNDKTAPRSRFDVAHELGHLILHPNLKLSEFNNKVNYKLIEKEADRFASAFLLPA 254 Query 232 SEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKE 291 S E+ L + LK+ W +S+QA+ RAY++ +++ L K + + E Sbjct 255 SSFGNEVMSSSLDHFVSLKKRWKISIQAMAYRAYQLNILNEYQFIYLRKKLASNNQLKNE 314 Query 292 PGIESIVREKPS 303 P + I E+PS Sbjct 315 PLDDVIPFEEPS 326 >gi|310819908|ref|YP_003952266.1| phage-like DNA-binding protein [Stigmatella aurantiaca DW4/3-1] gi|309392980|gb|ADO70439.1| Phage-like DNA-binding protein [Stigmatella aurantiaca DW4/3-1] Length=401 Score = 129 bits (324), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 107/345 (32%), Positives = 163/345 (48%), Gaps = 23/345 (6%) Query 4 LGDVLAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGVTDDLLI 63 +G L AR RG+ LAE V ++ PAI YE G P ++ +L + L V + + Sbjct 9 IGSRLVEARLERGIPVRALAERVEISVPAIYGYEKGASSPRADVLRRLCDALDVPERYFL 68 Query 64 HGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAF-- 121 + AV R ++T +A EA+L+ L + + + V + S +P F Sbjct 69 MPVEEQTGSAV--FYRAQRSTSVAACNAAEAKLSWLHRLGTVVGQFVDLPS-MSLPDFAI 125 Query 122 --DPEFTAAEDAARL---VRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQW 176 DP + + R R W + GP+ N+ +E G L+ +DGLSQ+ Sbjct 126 PRDPLALSDGEVERFAVETRRYWGLGQGPISNMVALLEKHGVLLARAQVDADALDGLSQF 185 Query 177 VDDYPVMLINANA-APDRKRLTLAHELGHLVLHS-------TNPTE--NMETEATAFAAE 226 D+ V L+ AN + R R +AHELGHLVLH P+E E +A FAA Sbjct 186 FPDHAVGLLAANKESGPRSRFDVAHELGHLVLHRGVEQSRLNKPSEWRAFENQAHRFAAA 245 Query 227 FLMPESEIRPELRRLDLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARG 286 L P R E++ L ELK W VS++ ++ +A R+G +S +A T+L+ RG Sbjct 246 LLFPPEAFRHEVKSFTLDGFFELKMRWKVSVRMMMMQAQRLGFLSDDAMTRLHINYARRG 305 Query 287 WKTKEPGIESIVREKPSLPAH-IGMTLRSRGFTDQQAAAIAGYAN 330 +K EP E + E+P L I + + RGF ++ A +AN Sbjct 306 YKRSEPLDEQLPPEQPRLIRRAIELWVAERGF--EEVCAHLPFAN 348 >gi|170731783|ref|YP_001763730.1| helix-turn-helix domain-containing protein [Burkholderia cenocepacia MC0-3] gi|169815025|gb|ACA89608.1| helix-turn-helix domain protein [Burkholderia cenocepacia MC0-3] Length=356 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 100/292 (35%), Positives = 145/292 (50%), Gaps = 14/292 (4%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDR-DPDQHIVAKLAEILGVTDDLLIHGN 66 LA+ARK R LT+ ELAE G+T + R E+G DP + LA++LG D G Sbjct 7 LAIARKRRQLTKKELAEKSGITAVTLTRLETGKTADPSMETLETLAQVLGYPVDFFF-GQ 65 Query 67 RFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHVPAFD-PEF 125 + L DA R +T ++A R + +F E IN +PA D P+ Sbjct 66 SYE-ELTTDAASFRSLSTMSAAQRDAALAAGQI----AFSLAE-WINERFDLPAPDLPDL 119 Query 126 TAAE--DAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLSQWVDDYPVM 183 + AA VR W + P+ L +EA G VF + +D S W +D P + Sbjct 120 REDDPISAAGSVRNYWGIGYKPIPKLLTLLEAKGVRVFTLAERNKNVDAFSCWKNDVPYI 179 Query 184 LINANAAPDRKRLTLAHELGHLVLHSTNPTENM--ETEATAFAAEFLMPESEIRPELRRL 241 +N + +R R AHELGHL++H P ++ E EA FAA FL+P+ ++ + R+ Sbjct 180 FLNTFKSAERTRFDAAHELGHLLMHRHTPAGHLDGEREADMFAAAFLIPQDDLISHMPRV 239 Query 242 -DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTKEP 292 L +L+E K WGVS+ AL A+ GL+S L K M+ G++T EP Sbjct 240 HSLAQLIEKKERWGVSVAALARTAFNSGLISDWHYRDLCKQMSMLGYRTAEP 291 >gi|148556374|ref|YP_001263956.1| hypothetical protein Swit_3472 [Sphingomonas wittichii RW1] gi|148501564|gb|ABQ69818.1| protein of unknown function DUF955 [Sphingomonas wittichii RW1] Length=355 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/302 (31%), Positives = 145/302 (49%), Gaps = 33/302 (10%) Query 8 LAVARKARGLTQIELAELVGLTQPAINRYESGDRDPDQHIVAKLAEILGV---------T 58 L + RK R +T LA +G++ I+R E+G +P+ V LA L Sbjct 7 LILGRKRRKMTARSLAGAIGVSPITISRLENGANEPESDTVDALAAALDFPRAFFFAEDV 66 Query 59 DDLLIHGNRFRGALAVDAHMRRHKTTKASAWRQLEARLNLLRVHASFLFEEVAINSEQHV 118 D+L FR ++ A R + + ++LF + + ++ Sbjct 67 DELPAGAASFRSLSSMSAKERDAALSAGAI---------------AYLFHDW-VAERFNL 110 Query 119 PAFD-PEF---TAAEDAARLVRAQWRMPMGPVVNLTRWMEAAGCLVFEEDFATQRIDGLS 174 P D P+ E AAR+VRAQW + P+ N+ R +E+ G VF T+ +D S Sbjct 111 PGGDIPDVRDEATPEGAARIVRAQWGLGEQPISNMVRLLESKGVRVFSLCEDTKNVDAFS 170 Query 175 QWVDDYPVMLINANAAPDRKRLTLAHELGHLVLH---STNPTENMETEATAFAAEFLMPE 231 W D P + +N + +R R AHELGHLV+H + + E+EA FA+ FLMP Sbjct 171 CWRGDRPFVFLNTFKSTERSRFDAAHELGHLVMHRHGAPQDSRQAESEADKFASAFLMPA 230 Query 232 SEIRPELRRL-DLGKLLELKREWGVSMQALLARAYRMGLVSAEARTKLYKAMNARGWKTK 290 ++ +R + L L+ KR WGVS+ AL R +++G+VS L +++RG++ + Sbjct 231 DDVVSRIRYVPGLDSLVSFKRRWGVSVAALNYRLHKLGIVSEWQNRSLNVELSSRGYRRQ 290 Query 291 EP 292 EP Sbjct 291 EP 292 Lambda K H 0.320 0.134 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 636071322808 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40