BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2020c
Length=99
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609157|ref|NP_216536.1| hypothetical protein Rv2020c [Mycob... 200 4e-50
gi|167970451|ref|ZP_02552728.1| hypothetical protein MtubH3_2143... 194 5e-48
gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tubercul... 123 1e-26
gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tubercul... 123 1e-26
gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tubercul... 123 1e-26
gi|339632064|ref|YP_004723706.1| hypothetical protein MAF_20390 ... 123 1e-26
gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tubercul... 123 1e-26
gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [My... 123 1e-26
gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycob... 123 1e-26
gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tubercul... 123 1e-26
gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosi... 123 1e-26
gi|289750608|ref|ZP_06509986.1| conserved hypothetical protein [... 122 2e-26
gi|296394144|ref|YP_003659028.1| type III restriction protein re... 121 4e-26
gi|262202558|ref|YP_003273766.1| type III restriction protein re... 109 2e-22
gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocar... 108 3e-22
gi|242254855|gb|ACS88422.1| helicase [Mycobacterium bovis] 105 2e-21
gi|242254809|gb|ACS88400.1| helicase [Mycobacterium bovis] >gi|2... 103 7e-21
gi|242254853|gb|ACS88421.1| helicase [Mycobacterium bovis] 102 2e-20
gi|242254823|gb|ACS88407.1| helicase [Mycobacterium bovis] >gi|2... 102 2e-20
gi|242254819|gb|ACS88405.1| helicase [Mycobacterium bovis] 102 2e-20
gi|297625507|ref|YP_003687270.1| helicase [Propionibacterium fre... 97.4 6e-19
gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter au... 94.4 5e-18
gi|334564090|ref|ZP_08517081.1| putative helicase [Corynebacteri... 93.6 8e-18
gi|172040938|ref|YP_001800652.1| hypothetical protein cur_1258 [... 92.8 1e-17
gi|323141513|ref|ZP_08076400.1| helicase C-terminal domain prote... 92.4 2e-17
gi|227504931|ref|ZP_03934980.1| conserved hypothetical protein [... 92.0 2e-17
gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00... 92.0 3e-17
gi|345039902|gb|EGW44205.1| hypothetical protein HMPREF0178_0295... 91.7 3e-17
gi|306836838|ref|ZP_07469796.1| helicase domain protein [Coryneb... 91.3 4e-17
gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase ... 90.5 8e-17
gi|309812063|ref|ZP_07705823.1| helicase C-terminal domain prote... 89.7 1e-16
gi|227487647|ref|ZP_03917963.1| superfamily II DNA/RNA helicase ... 89.7 1e-16
gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Co... 89.4 2e-16
gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium ... 89.4 2e-16
gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase ... 88.6 3e-16
gi|302205704|gb|ADL10046.1| UvrABC system protein B [Corynebacte... 88.6 3e-16
gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_0055... 88.2 3e-16
gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfami... 88.2 3e-16
gi|46580580|ref|YP_011388.1| adenine specific DNA methyltransfer... 87.4 7e-16
gi|116662287|ref|YP_829341.1| type III restriction enzyme, res s... 86.3 1e-15
gi|295395365|ref|ZP_06805565.1| helicase domain protein [Breviba... 84.7 4e-15
gi|333998394|ref|YP_004531006.1| endonuclease and methylase LlaG... 83.6 9e-15
gi|336325416|ref|YP_004605382.1| hypothetical protein CRES_0862 ... 83.2 1e-14
gi|330997129|ref|ZP_08320982.1| hypothetical protein HMPREF9442_... 82.0 3e-14
gi|238027964|ref|YP_002912195.1| adenine specific DNA methyltran... 81.6 3e-14
gi|53713270|ref|YP_099262.1| helicase domain-containing protein ... 80.9 6e-14
gi|325971695|ref|YP_004247886.1| type III restriction protein re... 79.7 1e-13
gi|255015106|ref|ZP_05287232.1| putative helicase [Bacteroides s... 78.6 3e-13
gi|150008154|ref|YP_001302897.1| putative helicase [Parabacteroi... 78.2 3e-13
gi|262381266|ref|ZP_06074404.1| conserved hypothetical protein [... 78.2 3e-13
>gi|15609157|ref|NP_216536.1| hypothetical protein Rv2020c [Mycobacterium tuberculosis H37Rv]
gi|15841503|ref|NP_336540.1| hypothetical protein MT2076 [Mycobacterium tuberculosis CDC1551]
gi|31793200|ref|NP_855693.1| hypothetical protein Mb2043c [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=99
Score = 200 bits (509), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 98/99 (99%), Positives = 99/99 (100%), Gaps = 0/99 (0%)
Query 1 VAPGMKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVN 60
+APGMKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVN
Sbjct 1 MAPGMKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVN 60
Query 61 DPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG 99
DPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG
Sbjct 61 DPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG 99
>gi|167970451|ref|ZP_02552728.1| hypothetical protein MtubH3_21433 [Mycobacterium tuberculosis
H37Ra]
gi|323719423|gb|EGB28551.1| hypothetical protein TMMG_01288 [Mycobacterium tuberculosis CDC1551A]
Length=95
Score = 194 bits (492), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPND 64
MKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPND
Sbjct 1 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPND 60
Query 65 WCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG 99
WCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG
Sbjct 61 WCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG 95
>gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tuberculosis K85]
gi|289539134|gb|EFD43712.1| helicase [Mycobacterium tuberculosis K85]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tuberculosis SUMu007]
gi|308345340|gb|EFP34191.1| helicase [Mycobacterium tuberculosis SUMu007]
gi|339294950|gb|AEJ47061.1| helicase [Mycobacterium tuberculosis CCDC5079]
Length=1603
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1500 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1555
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1556 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1592
>gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tuberculosis T46]
gi|289570133|ref|ZP_06450360.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289416440|gb|EFD13680.1| helicase [Mycobacterium tuberculosis T46]
gi|289543887|gb|EFD47535.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|339632064|ref|YP_004723706.1| hypothetical protein MAF_20390 [Mycobacterium africanum GM041182]
gi|339331420|emb|CCC27109.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tuberculosis EAS054]
gi|289694719|gb|EFD62148.1| helicase [Mycobacterium tuberculosis EAS054]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990404|ref|YP_002645091.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121493557|emb|CAL72031.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773517|dbj|BAH26323.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341601947|emb|CCC64621.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycobacterium bovis AF2122/97]
gi|31618798|emb|CAD96902.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tuberculosis CPHL_A]
gi|289420602|gb|EFD17803.1| helicase [Mycobacterium tuberculosis CPHL_A]
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosis CDC1551]
gi|253798919|ref|YP_003031920.1| helicase [Mycobacterium tuberculosis KZN 1435]
gi|254364844|ref|ZP_04980890.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
35 more sequence titles
Length=1606
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 1503 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 1558
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 1559 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI 1595
>gi|289750608|ref|ZP_06509986.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
gi|289691195|gb|EFD58624.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=123
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/99 (66%), Positives = 73/99 (74%), Gaps = 9/99 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 20 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 75
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAG 98
NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct 76 NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSIVA 114
>gi|296394144|ref|YP_003659028.1| type III restriction protein res subunit [Segniliparus rotundus
DSM 44985]
gi|296181291|gb|ADG98197.1| type III restriction protein res subunit [Segniliparus rotundus
DSM 44985]
Length=1636
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/93 (66%), Positives = 67/93 (73%), Gaps = 1/93 (1%)
Query 5 MKWAAKTDHLAIVLLPRHHRRH-SRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPN 63
MKW +KTDH I+ P+ SRSALGWIIERY+V D SGIVNDPN
Sbjct 1543 MKWRSKTDHTEIIYNPKVTITGIPESAERYLLGSRSALGWIIERYQVKIDPESGIVNDPN 1602
Query 64 DWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
DWCDEHDDPTYIVDLI+KVTTVSVETMKI+D L
Sbjct 1603 DWCDEHDDPTYIVDLIQKVTTVSVETMKIIDSL 1635
>gi|262202558|ref|YP_003273766.1| type III restriction protein res subunit [Gordonia bronchialis
DSM 43247]
gi|262085905|gb|ACY21873.1| type III restriction protein res subunit [Gordonia bronchialis
DSM 43247]
Length=1632
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/97 (60%), Positives = 71/97 (74%), Gaps = 9/97 (9%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +KTDH AI+ ++ + + G A +RSAL WII+RY+V TDKASGIV
Sbjct 1540 MKWRSKTDHTAII----YNTKVTIGGIPPEAEEYLLGARSALAWIIDRYQVKTDKASGIV 1595
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
NDPN WCDEH+DPTYI+DLIKKVTTV+ ET+KIV L
Sbjct 1596 NDPNLWCDEHNDPTYILDLIKKVTTVATETVKIVKDL 1632
>gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocardia farcinica IFM 10152]
gi|54019339|dbj|BAD60707.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=1653
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/60 (82%), Positives = 55/60 (92%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSAL W+I+RY+V TD ASGIVNDPNDWCDEHD PTYIVDLIK+VTTV+VETM+IVD L
Sbjct 1593 SRSALAWVIDRYQVKTDPASGIVNDPNDWCDEHDTPTYIVDLIKRVTTVAVETMRIVDSL 1652
>gi|242254855|gb|ACS88422.1| helicase [Mycobacterium bovis]
Length=133
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 57/86 (67%), Positives = 63/86 (74%), Gaps = 9/86 (10%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 52 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 107
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTV 85
NDPNDWCDEH DPTYIVDLIKKVTTV
Sbjct 108 NDPNDWCDEHADPTYIVDLIKKVTTV 133
>gi|242254809|gb|ACS88400.1| helicase [Mycobacterium bovis]
gi|242254811|gb|ACS88401.1| helicase [Mycobacterium bovis]
gi|242254813|gb|ACS88402.1| helicase [Mycobacterium bovis]
15 more sequence titles
Length=133
Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/86 (66%), Positives = 63/86 (74%), Gaps = 9/86 (10%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 52 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 107
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTV 85
NDPNDWCDEH +PTYIVDLIKKVTTV
Sbjct 108 NDPNDWCDEHANPTYIVDLIKKVTTV 133
>gi|242254853|gb|ACS88421.1| helicase [Mycobacterium bovis]
Length=133
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/86 (64%), Positives = 63/86 (74%), Gaps = 9/86 (10%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 52 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 107
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTV 85
NDPN+WCDEH +PTYIVDLIKKVTTV
Sbjct 108 NDPNNWCDEHANPTYIVDLIKKVTTV 133
>gi|242254823|gb|ACS88407.1| helicase [Mycobacterium bovis]
gi|242254842|gb|ACS88416.1| helicase [Mycobacterium bovis]
Length=133
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/85 (65%), Positives = 62/85 (73%), Gaps = 9/85 (10%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTTDKASGIV
Sbjct 52 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV 107
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTT 84
NDPNDWCDEH +PTYIVDLIKKVTT
Sbjct 108 NDPNDWCDEHANPTYIVDLIKKVTT 132
>gi|242254819|gb|ACS88405.1| helicase [Mycobacterium bovis]
Length=133
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/86 (64%), Positives = 63/86 (74%), Gaps = 9/86 (10%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV 59
MKW +K DH I+ ++ R + G A SRSALGWII+RYRVTT+KASGIV
Sbjct 52 MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTNKASGIV 107
Query 60 NDPNDWCDEHDDPTYIVDLIKKVTTV 85
NDPNDWCDEH +PTYIVDLIKKVTTV
Sbjct 108 NDPNDWCDEHANPTYIVDLIKKVTTV 133
>gi|297625507|ref|YP_003687270.1| helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921272|emb|CBL55824.1| helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
Length=1593
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/99 (56%), Positives = 64/99 (65%), Gaps = 13/99 (13%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-------SRSALGWIIERYRVTTDKASG 57
MKW K A++ + H G +PA SRSAL W+I+RY+V TDKAS
Sbjct 1496 MKWQNKETKKALI-----YNSHITLGD-IPAEAHEYMLGSRSALEWLIDRYQVKTDKASQ 1549
Query 58 IVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
IVNDPNDW EHDDP YI+DLIK+VT VSVETMKIV L
Sbjct 1550 IVNDPNDWAREHDDPRYIIDLIKRVTRVSVETMKIVKAL 1588
>gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter aurescens TC1]
gi|119951547|gb|ABM10457.1| putative Helicase [Arthrobacter aurescens TC1]
Length=1605
Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 51/60 (85%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ WIIERY+V TDKASGI+NDPNDWC E +P YI+DL++++ TVSVET+KIV L
Sbjct 1537 SRSAIEWIIERYQVKTDKASGIINDPNDWCQEVGNPRYIIDLLRRIVTVSVETLKIVQDL 1596
>gi|334564090|ref|ZP_08517081.1| putative helicase [Corynebacterium bovis DSM 20582]
Length=1599
Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/102 (51%), Positives = 66/102 (65%), Gaps = 13/102 (12%)
Query 5 MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-------SRSALGWIIERYRVTTDKASG 57
M+W ++TDH AIV+ P S +P SR+AL W+IE+++VTTDKA+G
Sbjct 1504 MRWRSRTDHTAIVVNP------SVTVAGIPPEAEEYVLGSRTALSWVIEQWKVTTDKATG 1557
Query 58 IVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG 99
NDPNDW E DP YIVDLI KVT V+VET++IV LA G
Sbjct 1558 RTNDPNDWAAEQGDPRYIVDLIGKVTRVAVETVRIVGDLATG 1599
>gi|172040938|ref|YP_001800652.1| hypothetical protein cur_1258 [Corynebacterium urealyticum DSM
7109]
gi|171852242|emb|CAQ05218.1| hypothetical protein cu1258 [Corynebacterium urealyticum DSM
7109]
Length=132
Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/106 (52%), Positives = 69/106 (66%), Gaps = 14/106 (13%)
Query 5 MKWAAKTD-----HLAIVLLPRHHRRHSRRGRALPA-------RSRSALGWIIERYRVTT 52
MKWA K D + V +++R + G +PA RSRSAL W+I+RY+V
Sbjct 29 MKWARKKDPETGKSVNDVTKLIYNKRVTISG--IPAEADEYVLRSRSALAWLIDRYQVKR 86
Query 53 DKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAG 98
DKASGIVNDPNDW DE +P YI+DLI KVT V+VET++IV GL G
Sbjct 87 DKASGIVNDPNDWADEVGNPLYILDLIAKVTRVAVETVRIVQGLEG 132
>gi|323141513|ref|ZP_08076400.1| helicase C-terminal domain protein [Phascolarctobacterium sp.
YIT 12067]
gi|322414007|gb|EFY04839.1| helicase protein [Phascolarctobacterium sp. YIT 12067]
Length=1632
Score = 92.4 bits (228), Expect = 2e-17, Method: Composition-based stats.
Identities = 41/59 (70%), Positives = 48/59 (82%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
RSA+ WI+ERY+V DKAS I NDPNDW EH+DPTYI+DL+ V TVS+ETMKIV GL
Sbjct 1567 RSAIEWIMERYQVKIDKASQIKNDPNDWAKEHNDPTYILDLLLSVITVSLETMKIVKGL 1625
>gi|227504931|ref|ZP_03934980.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
gi|227198481|gb|EEI78529.1| conserved hypothetical protein [Corynebacterium striatum ATCC
6940]
Length=397
Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/60 (74%), Positives = 51/60 (85%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSAL WII+RYRV DKASGIVNDPNDW DE +P YIVDLI KVT V+VET++IV+G+
Sbjct 331 SRSALAWIIDRYRVKKDKASGIVNDPNDWADEVGNPRYIVDLIAKVTRVAVETVRIVEGI 390
>gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii
ATCC 33806]
gi|224946756|gb|EEG27965.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii
ATCC 33806]
Length=1650
Score = 92.0 bits (227), Expect = 3e-17, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+RSA+ W+I+RY+V DK SGIVNDPNDWCDE +P YIVDLI KV V+VET++IVDGL
Sbjct 1591 ARSAVAWLIDRYQVKKDKPSGIVNDPNDWCDEVGNPRYIVDLIGKVVRVAVETVRIVDGL 1650
>gi|345039902|gb|EGW44205.1| hypothetical protein HMPREF0178_02959 [Bilophila sp. 4_1_30]
Length=1587
Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats.
Identities = 39/59 (67%), Positives = 49/59 (84%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SAL WI+ERY +TTDK SGI NDPNDWC EH+DPTYI +L+K++ VS+ET +IV GL
Sbjct 1521 KSALNWIMERYAITTDKDSGIRNDPNDWCREHNDPTYIYNLVKRIIRVSLETNRIVAGL 1579
>gi|306836838|ref|ZP_07469796.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
gi|304567299|gb|EFM42906.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
Length=1397
Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 51/60 (85%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ W+I+RY+V DKASGIVNDPNDW DE +P YIVDLI KVT V++ET++IVDG+
Sbjct 1332 SRSAVAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLIGKVTRVAMETVRIVDGV 1391
>gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078819|gb|EEI16782.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum
DSM 44291]
Length=1655
Score = 90.5 bits (223), Expect = 8e-17, Method: Composition-based stats.
Identities = 40/57 (71%), Positives = 49/57 (86%), Gaps = 0/57 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIV 93
SRSALGW+++RY+V DKASGIVNDPNDW DE +P YIVDL+ KVT V+VET++IV
Sbjct 1595 SRSALGWVVDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLVAKVTRVAVETLRIV 1651
>gi|309812063|ref|ZP_07705823.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
gi|308433942|gb|EFP57814.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
Length=1592
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 40/60 (67%), Positives = 49/60 (82%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ WII+RY + TDKASGIVNDPNDW E DP YI+DL+ ++ TVS+ETM+IVD L
Sbjct 1524 SRSAIEWIIDRYYIKTDKASGIVNDPNDWSKEVGDPRYIIDLLARIVTVSLETMRIVDAL 1583
>gi|227487647|ref|ZP_03917963.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227092465|gb|EEI27777.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
ATCC 51867]
Length=570
Score = 89.7 bits (221), Expect = 1e-16, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+RSA+ W+I+RY+V DKASGIVNDPNDW DE +P YIVDLI KV V+VET++IVDGL
Sbjct 510 ARSAVAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLIGKVVRVAVETVRIVDGL 569
>gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41223062|emb|CAF19007.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
ATCC 13032]
Length=1646
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ W+I+RY+V DKASGIVNDPNDW DE +P YIV+LI KVT V+VETM+IV+ L
Sbjct 1587 SRSAIAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVELIAKVTRVAVETMRIVEEL 1646
>gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
gi|21325842|dbj|BAC00463.1| Restriction enzymes type I helicase subunits and related helicases
[Corynebacterium glutamicum ATCC 13032]
Length=1643
Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ W+I+RY+V DKASGIVNDPNDW DE +P YIV+LI KVT V+VETM+IV+ L
Sbjct 1584 SRSAIAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVELIAKVTRVAVETMRIVEEL 1643
>gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC
49725]
gi|227077180|gb|EEI15143.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC
49725]
Length=1668
Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ W+I+RY+V DKASGIVNDPNDW DE +P YIVDLI KVT V++ET++IVD L
Sbjct 1605 SRSAVAWLIDRYQVKKDKASGIVNDPNDWADEVCNPRYIVDLIGKVTRVAMETVRIVDDL 1664
>gi|302205704|gb|ADL10046.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|308275940|gb|ADO25839.1| DNA or RNA helicase [Corynebacterium pseudotuberculosis I19]
gi|341824368|gb|AEK91889.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
Length=1648
Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/63 (64%), Positives = 52/63 (83%), Gaps = 0/63 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ W+I+RY+V TDKASGIVNDPNDW DE +P YIV+LI +V V++ET++IV+GL
Sbjct 1586 SRSAVAWLIDRYQVKTDKASGIVNDPNDWADEVGNPLYIVELIGRVVRVAMETVRIVEGL 1645
Query 97 AGG 99
G
Sbjct 1646 DEG 1648
>gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685429|gb|ADK28351.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
FRC41]
Length=1621
Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 40/63 (64%), Positives = 52/63 (83%), Gaps = 0/63 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSA+ W+I+RY+V TDKASGIVNDPNDW DE +P YIV+LI +V V++ET++IV+GL
Sbjct 1559 SRSAVAWLIDRYQVKTDKASGIVNDPNDWADEVGNPLYIVELIGRVVRVAMETVRIVEGL 1618
Query 97 AGG 99
G
Sbjct 1619 DEG 1621
>gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
DSM 20306]
gi|295968218|gb|EFG81467.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
DSM 20306]
Length=1656
Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats.
Identities = 42/60 (70%), Positives = 47/60 (79%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSAL WII+RY V DKASGIVNDPNDW DE +P YI DLI KVT V+VET++IV L
Sbjct 1594 SRSALAWIIDRYLVKKDKASGIVNDPNDWADEVGNPRYIADLIGKVTRVAVETVRIVKSL 1653
>gi|46580580|ref|YP_011388.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris
str. Hildenborough]
gi|46449999|gb|AAS96648.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234319|gb|ADP87173.1| type III restriction protein res subunit [Desulfovibrio vulgaris
RCH1]
Length=1595
Score = 87.4 bits (215), Expect = 7e-16, Method: Composition-based stats.
Identities = 36/59 (62%), Positives = 47/59 (80%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ W++ERY +T DK SGI NDPNDWC EHDDP YI +L+K++ VS+ET +IV GL
Sbjct 1532 KSAIEWLMERYAITVDKDSGIRNDPNDWCREHDDPAYIYNLVKRIIRVSMETNRIVSGL 1590
>gi|116662287|ref|YP_829341.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
gi|116613051|gb|ABK05760.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
Length=1613
Score = 86.3 bits (212), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/60 (64%), Positives = 48/60 (80%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSAL WI+ERYRV TDK SGIVNDPNDW +H +P YI+DLI K+ T+S+E+ +I+ L
Sbjct 1549 SRSALDWILERYRVKTDKDSGIVNDPNDWSRDHQEPRYIIDLIAKIVTLSLESNRIIGAL 1608
>gi|295395365|ref|ZP_06805565.1| helicase domain protein [Brevibacterium mcbrellneri ATCC 49030]
gi|294971783|gb|EFG47658.1| helicase domain protein [Brevibacterium mcbrellneri ATCC 49030]
Length=203
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/55 (75%), Positives = 47/55 (86%), Gaps = 0/55 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMK 91
SRSAL WI++RY+V TDKASGIVNDPNDW EH +P YIV+LIKKVT VSVET+
Sbjct 142 SRSALEWILDRYQVKTDKASGIVNDPNDWGLEHGNPRYIVELIKKVTHVSVETVN 196
>gi|333998394|ref|YP_004531006.1| endonuclease and methylase LlaGI [Treponema primitia ZAS-2]
gi|333739639|gb|AEF85129.1| endonuclease and methylase LlaGI [Treponema primitia ZAS-2]
Length=1666
Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats.
Identities = 37/59 (63%), Positives = 45/59 (77%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ WI+ERY VTT K SGI N+PNDW EH DP YI+DL+ V TVSV T+ IV+GL
Sbjct 1601 KSAIEWIMERYAVTTHKESGITNNPNDWAAEHGDPRYILDLLLSVITVSVNTIDIVNGL 1659
>gi|336325416|ref|YP_004605382.1| hypothetical protein CRES_0862 [Corynebacterium resistens DSM
45100]
gi|336101398|gb|AEI09218.1| hypothetical protein CRES_0862 [Corynebacterium resistens DSM
45100]
Length=562
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/61 (66%), Positives = 47/61 (78%), Gaps = 0/61 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
SRSAL WII+RY+V DKASGIVNDPNDW DE +P YIVDLI +VT V++ET + V L
Sbjct 501 SRSALAWIIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLIGRVTRVAMETNRTVKSL 560
Query 97 A 97
Sbjct 561 G 561
>gi|330997129|ref|ZP_08320982.1| hypothetical protein HMPREF9442_02075 [Paraprevotella xylaniphila
YIT 11841]
gi|329570924|gb|EGG52631.1| hypothetical protein HMPREF9442_02075 [Paraprevotella xylaniphila
YIT 11841]
Length=343
Score = 82.0 bits (201), Expect = 3e-14, Method: Composition-based stats.
Identities = 39/81 (49%), Positives = 52/81 (65%), Gaps = 7/81 (8%)
Query 23 HRRHSRRGRALPARS-------RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYI 75
H H+ +PA + +SA+ WI+ERY +TTDK SGI NDPNDW EH+D YI
Sbjct 257 HYNHAITITGIPAEAYEYVVNGKSAIEWIMERYSITTDKKSGITNDPNDWAREHNDEKYI 316
Query 76 VDLIKKVTTVSVETMKIVDGL 96
+L+ +V VSV+T+KIV L
Sbjct 317 FNLLLRVINVSVQTVKIVKRL 337
>gi|238027964|ref|YP_002912195.1| adenine specific DNA methyltransferase [Burkholderia glumae BGR1]
gi|237877158|gb|ACR29491.1| Adenine specific DNA methyltransferase [Burkholderia glumae BGR1]
Length=1587
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/60 (62%), Positives = 47/60 (79%), Gaps = 0/60 (0%)
Query 37 SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
S+SA+ WI+E+Y+V DK SGI+ DPN WC EH+DPTYI+ L+K+V VSVETM IV L
Sbjct 1523 SKSAVDWIVEQYKVDQDKDSGILEDPNAWCREHNDPTYILTLLKRVIRVSVETMGIVRTL 1582
>gi|53713270|ref|YP_099262.1| helicase domain-containing protein [Bacteroides fragilis YCH46]
gi|52216135|dbj|BAD48728.1| helicase domain protein [Bacteroides fragilis YCH46]
Length=1633
Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/59 (56%), Positives = 48/59 (82%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ WI+ERY +TT K SGI N+PNDW EH++P YI+DL+ V ++S+ET++IV+GL
Sbjct 1570 KSAIEWIMERYAITTHKDSGITNNPNDWATEHNNPHYILDLLLSVISLSMETVEIVNGL 1628
>gi|325971695|ref|YP_004247886.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
gi|324026933|gb|ADY13692.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
Length=1632
Score = 79.7 bits (195), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/59 (58%), Positives = 45/59 (77%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ WI+ERY+VT DKAS I NDPNDW EH+ P YI+DL+ + VSV+T+ IV+ L
Sbjct 1566 KSAIEWIMERYQVTVDKASQIKNDPNDWAREHNQPRYILDLLLSIINVSVQTVDIVNSL 1624
>gi|255015106|ref|ZP_05287232.1| putative helicase [Bacteroides sp. 2_1_7]
Length=1656
Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/59 (60%), Positives = 45/59 (77%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ WI+ERY+V TD +S I NDPNDW EHD+P YI+DL+ V VSV+TM+IV L
Sbjct 1592 KSAIEWIMERYQVKTDPSSLIKNDPNDWSREHDNPRYILDLLLSVINVSVQTMEIVKKL 1650
>gi|150008154|ref|YP_001302897.1| putative helicase [Parabacteroides distasonis ATCC 8503]
gi|149936578|gb|ABR43275.1| putative helicase [Parabacteroides distasonis ATCC 8503]
Length=1664
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/59 (60%), Positives = 45/59 (77%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ WI+ERY+V TD +S I NDPNDW EHD+P YI+DL+ V VSV+TM+IV L
Sbjct 1600 KSAIEWIMERYQVKTDPSSLIKNDPNDWSREHDNPRYILDLLLSVINVSVQTMEIVKKL 1658
>gi|262381266|ref|ZP_06074404.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262296443|gb|EEY84373.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length=1665
Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats.
Identities = 35/59 (60%), Positives = 45/59 (77%), Gaps = 0/59 (0%)
Query 38 RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL 96
+SA+ WI+ERY+V TD +S I NDPNDW EHD+P YI+DL+ V VSV+TM+IV L
Sbjct 1601 KSAIEWIMERYQVKTDPSSLIKNDPNDWSREHDNPRYILDLLLSVINVSVQTMEIVKKL 1659
Lambda K H
0.320 0.136 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129711308684
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40