BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2020c

Length=99
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609157|ref|NP_216536.1|  hypothetical protein Rv2020c [Mycob...   200    4e-50
gi|167970451|ref|ZP_02552728.1|  hypothetical protein MtubH3_2143...   194    5e-48
gi|289574703|ref|ZP_06454930.1|  helicase [Mycobacterium tubercul...   123    1e-26
gi|308375757|ref|ZP_07444991.2|  helicase [Mycobacterium tubercul...   123    1e-26
gi|289443521|ref|ZP_06433265.1|  helicase [Mycobacterium tubercul...   123    1e-26
gi|339632064|ref|YP_004723706.1|  hypothetical protein MAF_20390 ...   123    1e-26
gi|289754132|ref|ZP_06513510.1|  helicase [Mycobacterium tubercul...   123    1e-26
gi|121637910|ref|YP_978133.1|  hypothetical protein BCG_2043c [My...   123    1e-26
gi|31793206|ref|NP_855699.1|  hypothetical protein Mb2049c [Mycob...   123    1e-26
gi|289447644|ref|ZP_06437388.1|  helicase [Mycobacterium tubercul...   123    1e-26
gi|15841510|ref|NP_336547.1|  helicase [Mycobacterium tuberculosi...   123    1e-26
gi|289750608|ref|ZP_06509986.1|  conserved hypothetical protein [...   122    2e-26
gi|296394144|ref|YP_003659028.1|  type III restriction protein re...   121    4e-26
gi|262202558|ref|YP_003273766.1|  type III restriction protein re...   109    2e-22
gi|54027831|ref|YP_122071.1|  hypothetical protein pnf2220 [Nocar...   108    3e-22
gi|242254855|gb|ACS88422.1|  helicase [Mycobacterium bovis]            105    2e-21
gi|242254809|gb|ACS88400.1|  helicase [Mycobacterium bovis] >gi|2...   103    7e-21
gi|242254853|gb|ACS88421.1|  helicase [Mycobacterium bovis]            102    2e-20
gi|242254823|gb|ACS88407.1|  helicase [Mycobacterium bovis] >gi|2...   102    2e-20
gi|242254819|gb|ACS88405.1|  helicase [Mycobacterium bovis]            102    2e-20
gi|297625507|ref|YP_003687270.1|  helicase [Propionibacterium fre...  97.4    6e-19
gi|119952417|ref|YP_950133.1|  putative helicase [Arthrobacter au...  94.4    5e-18
gi|334564090|ref|ZP_08517081.1|  putative helicase [Corynebacteri...  93.6    8e-18
gi|172040938|ref|YP_001800652.1|  hypothetical protein cur_1258 [...  92.8    1e-17
gi|323141513|ref|ZP_08076400.1|  helicase C-terminal domain prote...  92.4    2e-17
gi|227504931|ref|ZP_03934980.1|  conserved hypothetical protein [...  92.0    2e-17
gi|225020367|ref|ZP_03709559.1|  hypothetical protein CORMATOL_00...  92.0    3e-17
gi|345039902|gb|EGW44205.1|  hypothetical protein HMPREF0178_0295...  91.7    3e-17
gi|306836838|ref|ZP_07469796.1|  helicase domain protein [Coryneb...  91.3    4e-17
gi|227549090|ref|ZP_03979139.1|  superfamily II DNA/RNA helicase ...  90.5    8e-17
gi|309812063|ref|ZP_07705823.1|  helicase C-terminal domain prote...  89.7    1e-16
gi|227487647|ref|ZP_03917963.1|  superfamily II DNA/RNA helicase ...  89.7    1e-16
gi|62391915|ref|YP_227317.1|  superfamily II DNA/RNA helicase [Co...  89.4    2e-16
gi|19554259|ref|NP_602261.1|  putative helicase [Corynebacterium ...  89.4    2e-16
gi|227502121|ref|ZP_03932170.1|  superfamily II DNA/RNA helicase ...  88.6    3e-16
gi|302205704|gb|ADL10046.1|  UvrABC system protein B [Corynebacte...  88.6    3e-16
gi|300857975|ref|YP_003782958.1|  hypothetical protein cpfrc_0055...  88.2    3e-16
gi|296118729|ref|ZP_06837305.1|  DNA or RNA helicase of superfami...  88.2    3e-16
gi|46580580|ref|YP_011388.1|  adenine specific DNA methyltransfer...  87.4    7e-16
gi|116662287|ref|YP_829341.1|  type III restriction enzyme, res s...  86.3    1e-15
gi|295395365|ref|ZP_06805565.1|  helicase domain protein [Breviba...  84.7    4e-15
gi|333998394|ref|YP_004531006.1|  endonuclease and methylase LlaG...  83.6    9e-15
gi|336325416|ref|YP_004605382.1|  hypothetical protein CRES_0862 ...  83.2    1e-14
gi|330997129|ref|ZP_08320982.1|  hypothetical protein HMPREF9442_...  82.0    3e-14
gi|238027964|ref|YP_002912195.1|  adenine specific DNA methyltran...  81.6    3e-14
gi|53713270|ref|YP_099262.1|  helicase domain-containing protein ...  80.9    6e-14
gi|325971695|ref|YP_004247886.1|  type III restriction protein re...  79.7    1e-13
gi|255015106|ref|ZP_05287232.1|  putative helicase [Bacteroides s...  78.6    3e-13
gi|150008154|ref|YP_001302897.1|  putative helicase [Parabacteroi...  78.2    3e-13
gi|262381266|ref|ZP_06074404.1|  conserved hypothetical protein [...  78.2    3e-13


>gi|15609157|ref|NP_216536.1| hypothetical protein Rv2020c [Mycobacterium tuberculosis H37Rv]
 gi|15841503|ref|NP_336540.1| hypothetical protein MT2076 [Mycobacterium tuberculosis CDC1551]
 gi|31793200|ref|NP_855693.1| hypothetical protein Mb2043c [Mycobacterium bovis AF2122/97]
 70 more sequence titles
 Length=99

 Score =  200 bits (509),  Expect = 4e-50, Method: Compositional matrix adjust.
 Identities = 98/99 (99%), Positives = 99/99 (100%), Gaps = 0/99 (0%)

Query  1   VAPGMKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVN  60
           +APGMKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVN
Sbjct  1   MAPGMKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVN  60

Query  61  DPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG  99
           DPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG
Sbjct  61  DPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG  99


>gi|167970451|ref|ZP_02552728.1| hypothetical protein MtubH3_21433 [Mycobacterium tuberculosis 
H37Ra]
 gi|323719423|gb|EGB28551.1| hypothetical protein TMMG_01288 [Mycobacterium tuberculosis CDC1551A]
Length=95

 Score =  194 bits (492),  Expect = 5e-48, Method: Compositional matrix adjust.
 Identities = 95/95 (100%), Positives = 95/95 (100%), Gaps = 0/95 (0%)

Query  5   MKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPND  64
           MKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPND
Sbjct  1   MKWAAKTDHLAIVLLPRHHRRHSRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPND  60

Query  65  WCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG  99
           WCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG
Sbjct  61  WCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG  95


>gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tuberculosis K85]
 gi|289539134|gb|EFD43712.1| helicase [Mycobacterium tuberculosis K85]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tuberculosis SUMu007]
 gi|308345340|gb|EFP34191.1| helicase [Mycobacterium tuberculosis SUMu007]
 gi|339294950|gb|AEJ47061.1| helicase [Mycobacterium tuberculosis CCDC5079]
Length=1603

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1500  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1555

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1556  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1592


>gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tuberculosis T46]
 gi|289570133|ref|ZP_06450360.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289416440|gb|EFD13680.1| helicase [Mycobacterium tuberculosis T46]
 gi|289543887|gb|EFD47535.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|339632064|ref|YP_004723706.1| hypothetical protein MAF_20390 [Mycobacterium africanum GM041182]
 gi|339331420|emb|CCC27109.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tuberculosis EAS054]
 gi|289694719|gb|EFD62148.1| helicase [Mycobacterium tuberculosis EAS054]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224990404|ref|YP_002645091.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|121493557|emb|CAL72031.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|224773517|dbj|BAH26323.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|341601947|emb|CCC64621.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycobacterium bovis AF2122/97]
 gi|31618798|emb|CAD96902.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tuberculosis CPHL_A]
 gi|289420602|gb|EFD17803.1| helicase [Mycobacterium tuberculosis CPHL_A]
Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosis CDC1551]
 gi|253798919|ref|YP_003031920.1| helicase [Mycobacterium tuberculosis KZN 1435]
 gi|254364844|ref|ZP_04980890.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 35 more sequence titles
 Length=1606

 Score =  123 bits (308),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 65/97 (68%), Positives = 73/97 (76%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  1503  MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  1558

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +
Sbjct  1559  NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSI  1595


>gi|289750608|ref|ZP_06509986.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
 gi|289691195|gb|EFD58624.1| conserved hypothetical protein [Mycobacterium tuberculosis T92]
Length=123

 Score =  122 bits (305),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 65/99 (66%), Positives = 73/99 (74%), Gaps = 9/99 (9%)

Query  5    MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
            MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  20   MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  75

Query  60   NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAG  98
            NDPNDWCDEH +PTYIVDLIKKVTTVSVETMKIVD +  
Sbjct  76   NDPNDWCDEHANPTYIVDLIKKVTTVSVETMKIVDSIVA  114


>gi|296394144|ref|YP_003659028.1| type III restriction protein res subunit [Segniliparus rotundus 
DSM 44985]
 gi|296181291|gb|ADG98197.1| type III restriction protein res subunit [Segniliparus rotundus 
DSM 44985]
Length=1636

 Score =  121 bits (303),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 61/93 (66%), Positives = 67/93 (73%), Gaps = 1/93 (1%)

Query  5     MKWAAKTDHLAIVLLPRHHRRH-SRRGRALPARSRSALGWIIERYRVTTDKASGIVNDPN  63
             MKW +KTDH  I+  P+                SRSALGWIIERY+V  D  SGIVNDPN
Sbjct  1543  MKWRSKTDHTEIIYNPKVTITGIPESAERYLLGSRSALGWIIERYQVKIDPESGIVNDPN  1602

Query  64    DWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             DWCDEHDDPTYIVDLI+KVTTVSVETMKI+D L
Sbjct  1603  DWCDEHDDPTYIVDLIQKVTTVSVETMKIIDSL  1635


>gi|262202558|ref|YP_003273766.1| type III restriction protein res subunit [Gordonia bronchialis 
DSM 43247]
 gi|262085905|gb|ACY21873.1| type III restriction protein res subunit [Gordonia bronchialis 
DSM 43247]
Length=1632

 Score =  109 bits (272),  Expect = 2e-22, Method: Compositional matrix adjust.
 Identities = 58/97 (60%), Positives = 71/97 (74%), Gaps = 9/97 (9%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
             MKW +KTDH AI+    ++ + +  G    A      +RSAL WII+RY+V TDKASGIV
Sbjct  1540  MKWRSKTDHTAII----YNTKVTIGGIPPEAEEYLLGARSALAWIIDRYQVKTDKASGIV  1595

Query  60    NDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             NDPN WCDEH+DPTYI+DLIKKVTTV+ ET+KIV  L
Sbjct  1596  NDPNLWCDEHNDPTYILDLIKKVTTVATETVKIVKDL  1632


>gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocardia farcinica IFM 10152]
 gi|54019339|dbj|BAD60707.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=1653

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 49/60 (82%), Positives = 55/60 (92%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSAL W+I+RY+V TD ASGIVNDPNDWCDEHD PTYIVDLIK+VTTV+VETM+IVD L
Sbjct  1593  SRSALAWVIDRYQVKTDPASGIVNDPNDWCDEHDTPTYIVDLIKRVTTVAVETMRIVDSL  1652


>gi|242254855|gb|ACS88422.1| helicase [Mycobacterium bovis]
Length=133

 Score =  105 bits (262),  Expect = 2e-21, Method: Compositional matrix adjust.
 Identities = 57/86 (67%), Positives = 63/86 (74%), Gaps = 9/86 (10%)

Query  5    MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
            MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  52   MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  107

Query  60   NDPNDWCDEHDDPTYIVDLIKKVTTV  85
            NDPNDWCDEH DPTYIVDLIKKVTTV
Sbjct  108  NDPNDWCDEHADPTYIVDLIKKVTTV  133


>gi|242254809|gb|ACS88400.1| helicase [Mycobacterium bovis]
 gi|242254811|gb|ACS88401.1| helicase [Mycobacterium bovis]
 gi|242254813|gb|ACS88402.1| helicase [Mycobacterium bovis]
 15 more sequence titles
 Length=133

 Score =  103 bits (258),  Expect = 7e-21, Method: Compositional matrix adjust.
 Identities = 56/86 (66%), Positives = 63/86 (74%), Gaps = 9/86 (10%)

Query  5    MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
            MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  52   MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  107

Query  60   NDPNDWCDEHDDPTYIVDLIKKVTTV  85
            NDPNDWCDEH +PTYIVDLIKKVTTV
Sbjct  108  NDPNDWCDEHANPTYIVDLIKKVTTV  133


>gi|242254853|gb|ACS88421.1| helicase [Mycobacterium bovis]
Length=133

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 55/86 (64%), Positives = 63/86 (74%), Gaps = 9/86 (10%)

Query  5    MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
            MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  52   MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  107

Query  60   NDPNDWCDEHDDPTYIVDLIKKVTTV  85
            NDPN+WCDEH +PTYIVDLIKKVTTV
Sbjct  108  NDPNNWCDEHANPTYIVDLIKKVTTV  133


>gi|242254823|gb|ACS88407.1| helicase [Mycobacterium bovis]
 gi|242254842|gb|ACS88416.1| helicase [Mycobacterium bovis]
Length=133

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 55/85 (65%), Positives = 62/85 (73%), Gaps = 9/85 (10%)

Query  5    MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
            MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTTDKASGIV
Sbjct  52   MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTDKASGIV  107

Query  60   NDPNDWCDEHDDPTYIVDLIKKVTT  84
            NDPNDWCDEH +PTYIVDLIKKVTT
Sbjct  108  NDPNDWCDEHANPTYIVDLIKKVTT  132


>gi|242254819|gb|ACS88405.1| helicase [Mycobacterium bovis]
Length=133

 Score =  102 bits (254),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 55/86 (64%), Positives = 63/86 (74%), Gaps = 9/86 (10%)

Query  5    MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-----SRSALGWIIERYRVTTDKASGIV  59
            MKW +K DH  I+    ++ R +  G    A      SRSALGWII+RYRVTT+KASGIV
Sbjct  52   MKWKSKQDHSTII----YNSRVTIAGIPDEAERYLLGSRSALGWIIDRYRVTTNKASGIV  107

Query  60   NDPNDWCDEHDDPTYIVDLIKKVTTV  85
            NDPNDWCDEH +PTYIVDLIKKVTTV
Sbjct  108  NDPNDWCDEHANPTYIVDLIKKVTTV  133


>gi|297625507|ref|YP_003687270.1| helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921272|emb|CBL55824.1| helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
Length=1593

 Score = 97.4 bits (241),  Expect = 6e-19, Method: Compositional matrix adjust.
 Identities = 55/99 (56%), Positives = 64/99 (65%), Gaps = 13/99 (13%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-------SRSALGWIIERYRVTTDKASG  57
             MKW  K    A++     +  H   G  +PA        SRSAL W+I+RY+V TDKAS 
Sbjct  1496  MKWQNKETKKALI-----YNSHITLGD-IPAEAHEYMLGSRSALEWLIDRYQVKTDKASQ  1549

Query  58    IVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             IVNDPNDW  EHDDP YI+DLIK+VT VSVETMKIV  L
Sbjct  1550  IVNDPNDWAREHDDPRYIIDLIKRVTRVSVETMKIVKAL  1588


>gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter aurescens TC1]
 gi|119951547|gb|ABM10457.1| putative Helicase [Arthrobacter aurescens TC1]
Length=1605

 Score = 94.4 bits (233),  Expect = 5e-18, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 51/60 (85%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ WIIERY+V TDKASGI+NDPNDWC E  +P YI+DL++++ TVSVET+KIV  L
Sbjct  1537  SRSAIEWIIERYQVKTDKASGIINDPNDWCQEVGNPRYIIDLLRRIVTVSVETLKIVQDL  1596


>gi|334564090|ref|ZP_08517081.1| putative helicase [Corynebacterium bovis DSM 20582]
Length=1599

 Score = 93.6 bits (231),  Expect = 8e-18, Method: Compositional matrix adjust.
 Identities = 52/102 (51%), Positives = 66/102 (65%), Gaps = 13/102 (12%)

Query  5     MKWAAKTDHLAIVLLPRHHRRHSRRGRALPAR-------SRSALGWIIERYRVTTDKASG  57
             M+W ++TDH AIV+ P      S     +P         SR+AL W+IE+++VTTDKA+G
Sbjct  1504  MRWRSRTDHTAIVVNP------SVTVAGIPPEAEEYVLGSRTALSWVIEQWKVTTDKATG  1557

Query  58    IVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAGG  99
               NDPNDW  E  DP YIVDLI KVT V+VET++IV  LA G
Sbjct  1558  RTNDPNDWAAEQGDPRYIVDLIGKVTRVAVETVRIVGDLATG  1599


>gi|172040938|ref|YP_001800652.1| hypothetical protein cur_1258 [Corynebacterium urealyticum DSM 
7109]
 gi|171852242|emb|CAQ05218.1| hypothetical protein cu1258 [Corynebacterium urealyticum DSM 
7109]
Length=132

 Score = 92.8 bits (229),  Expect = 1e-17, Method: Compositional matrix adjust.
 Identities = 55/106 (52%), Positives = 69/106 (66%), Gaps = 14/106 (13%)

Query  5    MKWAAKTD-----HLAIVLLPRHHRRHSRRGRALPA-------RSRSALGWIIERYRVTT  52
            MKWA K D      +  V    +++R +  G  +PA       RSRSAL W+I+RY+V  
Sbjct  29   MKWARKKDPETGKSVNDVTKLIYNKRVTISG--IPAEADEYVLRSRSALAWLIDRYQVKR  86

Query  53   DKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGLAG  98
            DKASGIVNDPNDW DE  +P YI+DLI KVT V+VET++IV GL G
Sbjct  87   DKASGIVNDPNDWADEVGNPLYILDLIAKVTRVAVETVRIVQGLEG  132


>gi|323141513|ref|ZP_08076400.1| helicase C-terminal domain protein [Phascolarctobacterium sp. 
YIT 12067]
 gi|322414007|gb|EFY04839.1| helicase protein [Phascolarctobacterium sp. YIT 12067]
Length=1632

 Score = 92.4 bits (228),  Expect = 2e-17, Method: Composition-based stats.
 Identities = 41/59 (70%), Positives = 48/59 (82%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             RSA+ WI+ERY+V  DKAS I NDPNDW  EH+DPTYI+DL+  V TVS+ETMKIV GL
Sbjct  1567  RSAIEWIMERYQVKIDKASQIKNDPNDWAKEHNDPTYILDLLLSVITVSLETMKIVKGL  1625


>gi|227504931|ref|ZP_03934980.1| conserved hypothetical protein [Corynebacterium striatum ATCC 
6940]
 gi|227198481|gb|EEI78529.1| conserved hypothetical protein [Corynebacterium striatum ATCC 
6940]
Length=397

 Score = 92.0 bits (227),  Expect = 2e-17, Method: Compositional matrix adjust.
 Identities = 44/60 (74%), Positives = 51/60 (85%), Gaps = 0/60 (0%)

Query  37   SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
            SRSAL WII+RYRV  DKASGIVNDPNDW DE  +P YIVDLI KVT V+VET++IV+G+
Sbjct  331  SRSALAWIIDRYRVKKDKASGIVNDPNDWADEVGNPRYIVDLIAKVTRVAVETVRIVEGI  390


>gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii 
ATCC 33806]
 gi|224946756|gb|EEG27965.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii 
ATCC 33806]
Length=1650

 Score = 92.0 bits (227),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +RSA+ W+I+RY+V  DK SGIVNDPNDWCDE  +P YIVDLI KV  V+VET++IVDGL
Sbjct  1591  ARSAVAWLIDRYQVKKDKPSGIVNDPNDWCDEVGNPRYIVDLIGKVVRVAVETVRIVDGL  1650


>gi|345039902|gb|EGW44205.1| hypothetical protein HMPREF0178_02959 [Bilophila sp. 4_1_30]
Length=1587

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Composition-based stats.
 Identities = 39/59 (67%), Positives = 49/59 (84%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SAL WI+ERY +TTDK SGI NDPNDWC EH+DPTYI +L+K++  VS+ET +IV GL
Sbjct  1521  KSALNWIMERYAITTDKDSGIRNDPNDWCREHNDPTYIYNLVKRIIRVSLETNRIVAGL  1579


>gi|306836838|ref|ZP_07469796.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
 gi|304567299|gb|EFM42906.1| helicase domain protein [Corynebacterium accolens ATCC 49726]
Length=1397

 Score = 91.3 bits (225),  Expect = 4e-17, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 51/60 (85%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ W+I+RY+V  DKASGIVNDPNDW DE  +P YIVDLI KVT V++ET++IVDG+
Sbjct  1332  SRSAVAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLIGKVTRVAMETVRIVDGV  1391


>gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum 
DSM 44291]
 gi|227078819|gb|EEI16782.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum 
DSM 44291]
Length=1655

 Score = 90.5 bits (223),  Expect = 8e-17, Method: Composition-based stats.
 Identities = 40/57 (71%), Positives = 49/57 (86%), Gaps = 0/57 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIV  93
             SRSALGW+++RY+V  DKASGIVNDPNDW DE  +P YIVDL+ KVT V+VET++IV
Sbjct  1595  SRSALGWVVDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLVAKVTRVAVETLRIV  1651


>gi|309812063|ref|ZP_07705823.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
 gi|308433942|gb|EFP57814.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
Length=1592

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Compositional matrix adjust.
 Identities = 40/60 (67%), Positives = 49/60 (82%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ WII+RY + TDKASGIVNDPNDW  E  DP YI+DL+ ++ TVS+ETM+IVD L
Sbjct  1524  SRSAIEWIIDRYYIKTDKASGIVNDPNDWSKEVGDPRYIIDLLARIVTVSLETMRIVDAL  1583


>gi|227487647|ref|ZP_03917963.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum 
ATCC 51867]
 gi|227092465|gb|EEI27777.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum 
ATCC 51867]
Length=570

 Score = 89.7 bits (221),  Expect = 1e-16, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)

Query  37   SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
            +RSA+ W+I+RY+V  DKASGIVNDPNDW DE  +P YIVDLI KV  V+VET++IVDGL
Sbjct  510  ARSAVAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLIGKVVRVAVETVRIVDGL  569


>gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC 
13032]
 gi|41223062|emb|CAF19007.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum 
ATCC 13032]
Length=1646

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ W+I+RY+V  DKASGIVNDPNDW DE  +P YIV+LI KVT V+VETM+IV+ L
Sbjct  1587  SRSAIAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVELIAKVTRVAVETMRIVEEL  1646


>gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
 gi|21325842|dbj|BAC00463.1| Restriction enzymes type I helicase subunits and related helicases 
[Corynebacterium glutamicum ATCC 13032]
Length=1643

 Score = 89.4 bits (220),  Expect = 2e-16, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ W+I+RY+V  DKASGIVNDPNDW DE  +P YIV+LI KVT V+VETM+IV+ L
Sbjct  1584  SRSAIAWLIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVELIAKVTRVAVETMRIVEEL  1643


>gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC 
49725]
 gi|227077180|gb|EEI15143.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC 
49725]
Length=1668

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 41/60 (69%), Positives = 50/60 (84%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ W+I+RY+V  DKASGIVNDPNDW DE  +P YIVDLI KVT V++ET++IVD L
Sbjct  1605  SRSAVAWLIDRYQVKKDKASGIVNDPNDWADEVCNPRYIVDLIGKVTRVAMETVRIVDDL  1664


>gi|302205704|gb|ADL10046.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
 gi|308275940|gb|ADO25839.1| DNA or RNA helicase [Corynebacterium pseudotuberculosis I19]
 gi|341824368|gb|AEK91889.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
Length=1648

 Score = 88.6 bits (218),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 40/63 (64%), Positives = 52/63 (83%), Gaps = 0/63 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ W+I+RY+V TDKASGIVNDPNDW DE  +P YIV+LI +V  V++ET++IV+GL
Sbjct  1586  SRSAVAWLIDRYQVKTDKASGIVNDPNDWADEVGNPLYIVELIGRVVRVAMETVRIVEGL  1645

Query  97    AGG  99
               G
Sbjct  1646  DEG  1648


>gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|300685429|gb|ADK28351.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis 
FRC41]
Length=1621

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 40/63 (64%), Positives = 52/63 (83%), Gaps = 0/63 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSA+ W+I+RY+V TDKASGIVNDPNDW DE  +P YIV+LI +V  V++ET++IV+GL
Sbjct  1559  SRSAVAWLIDRYQVKTDKASGIVNDPNDWADEVGNPLYIVELIGRVVRVAMETVRIVEGL  1618

Query  97    AGG  99
               G
Sbjct  1619  DEG  1621


>gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes 
DSM 20306]
 gi|295968218|gb|EFG81467.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes 
DSM 20306]
Length=1656

 Score = 88.2 bits (217),  Expect = 3e-16, Method: Composition-based stats.
 Identities = 42/60 (70%), Positives = 47/60 (79%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSAL WII+RY V  DKASGIVNDPNDW DE  +P YI DLI KVT V+VET++IV  L
Sbjct  1594  SRSALAWIIDRYLVKKDKASGIVNDPNDWADEVGNPRYIADLIGKVTRVAVETVRIVKSL  1653


>gi|46580580|ref|YP_011388.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris 
str. Hildenborough]
 gi|46449999|gb|AAS96648.1| adenine specific DNA methyltransferase, putative [Desulfovibrio 
vulgaris str. Hildenborough]
 gi|311234319|gb|ADP87173.1| type III restriction protein res subunit [Desulfovibrio vulgaris 
RCH1]
Length=1595

 Score = 87.4 bits (215),  Expect = 7e-16, Method: Composition-based stats.
 Identities = 36/59 (62%), Positives = 47/59 (80%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ W++ERY +T DK SGI NDPNDWC EHDDP YI +L+K++  VS+ET +IV GL
Sbjct  1532  KSAIEWLMERYAITVDKDSGIRNDPNDWCREHDDPAYIYNLVKRIIRVSMETNRIVSGL  1590


>gi|116662287|ref|YP_829341.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
 gi|116613051|gb|ABK05760.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
Length=1613

 Score = 86.3 bits (212),  Expect = 1e-15, Method: Compositional matrix adjust.
 Identities = 38/60 (64%), Positives = 48/60 (80%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             SRSAL WI+ERYRV TDK SGIVNDPNDW  +H +P YI+DLI K+ T+S+E+ +I+  L
Sbjct  1549  SRSALDWILERYRVKTDKDSGIVNDPNDWSRDHQEPRYIIDLIAKIVTLSLESNRIIGAL  1608


>gi|295395365|ref|ZP_06805565.1| helicase domain protein [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971783|gb|EFG47658.1| helicase domain protein [Brevibacterium mcbrellneri ATCC 49030]
Length=203

 Score = 84.7 bits (208),  Expect = 4e-15, Method: Compositional matrix adjust.
 Identities = 41/55 (75%), Positives = 47/55 (86%), Gaps = 0/55 (0%)

Query  37   SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMK  91
            SRSAL WI++RY+V TDKASGIVNDPNDW  EH +P YIV+LIKKVT VSVET+ 
Sbjct  142  SRSALEWILDRYQVKTDKASGIVNDPNDWGLEHGNPRYIVELIKKVTHVSVETVN  196


>gi|333998394|ref|YP_004531006.1| endonuclease and methylase LlaGI [Treponema primitia ZAS-2]
 gi|333739639|gb|AEF85129.1| endonuclease and methylase LlaGI [Treponema primitia ZAS-2]
Length=1666

 Score = 83.6 bits (205),  Expect = 9e-15, Method: Composition-based stats.
 Identities = 37/59 (63%), Positives = 45/59 (77%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ WI+ERY VTT K SGI N+PNDW  EH DP YI+DL+  V TVSV T+ IV+GL
Sbjct  1601  KSAIEWIMERYAVTTHKESGITNNPNDWAAEHGDPRYILDLLLSVITVSVNTIDIVNGL  1659


>gi|336325416|ref|YP_004605382.1| hypothetical protein CRES_0862 [Corynebacterium resistens DSM 
45100]
 gi|336101398|gb|AEI09218.1| hypothetical protein CRES_0862 [Corynebacterium resistens DSM 
45100]
Length=562

 Score = 83.2 bits (204),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 40/61 (66%), Positives = 47/61 (78%), Gaps = 0/61 (0%)

Query  37   SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
            SRSAL WII+RY+V  DKASGIVNDPNDW DE  +P YIVDLI +VT V++ET + V  L
Sbjct  501  SRSALAWIIDRYQVKKDKASGIVNDPNDWADEVGNPRYIVDLIGRVTRVAMETNRTVKSL  560

Query  97   A  97
             
Sbjct  561  G  561


>gi|330997129|ref|ZP_08320982.1| hypothetical protein HMPREF9442_02075 [Paraprevotella xylaniphila 
YIT 11841]
 gi|329570924|gb|EGG52631.1| hypothetical protein HMPREF9442_02075 [Paraprevotella xylaniphila 
YIT 11841]
Length=343

 Score = 82.0 bits (201),  Expect = 3e-14, Method: Composition-based stats.
 Identities = 39/81 (49%), Positives = 52/81 (65%), Gaps = 7/81 (8%)

Query  23   HRRHSRRGRALPARS-------RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYI  75
            H  H+     +PA +       +SA+ WI+ERY +TTDK SGI NDPNDW  EH+D  YI
Sbjct  257  HYNHAITITGIPAEAYEYVVNGKSAIEWIMERYSITTDKKSGITNDPNDWAREHNDEKYI  316

Query  76   VDLIKKVTTVSVETMKIVDGL  96
             +L+ +V  VSV+T+KIV  L
Sbjct  317  FNLLLRVINVSVQTVKIVKRL  337


>gi|238027964|ref|YP_002912195.1| adenine specific DNA methyltransferase [Burkholderia glumae BGR1]
 gi|237877158|gb|ACR29491.1| Adenine specific DNA methyltransferase [Burkholderia glumae BGR1]
Length=1587

 Score = 81.6 bits (200),  Expect = 3e-14, Method: Compositional matrix adjust.
 Identities = 37/60 (62%), Positives = 47/60 (79%), Gaps = 0/60 (0%)

Query  37    SRSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             S+SA+ WI+E+Y+V  DK SGI+ DPN WC EH+DPTYI+ L+K+V  VSVETM IV  L
Sbjct  1523  SKSAVDWIVEQYKVDQDKDSGILEDPNAWCREHNDPTYILTLLKRVIRVSVETMGIVRTL  1582


>gi|53713270|ref|YP_099262.1| helicase domain-containing protein [Bacteroides fragilis YCH46]
 gi|52216135|dbj|BAD48728.1| helicase domain protein [Bacteroides fragilis YCH46]
Length=1633

 Score = 80.9 bits (198),  Expect = 6e-14, Method: Composition-based stats.
 Identities = 33/59 (56%), Positives = 48/59 (82%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ WI+ERY +TT K SGI N+PNDW  EH++P YI+DL+  V ++S+ET++IV+GL
Sbjct  1570  KSAIEWIMERYAITTHKDSGITNNPNDWATEHNNPHYILDLLLSVISLSMETVEIVNGL  1628


>gi|325971695|ref|YP_004247886.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
 gi|324026933|gb|ADY13692.1| type III restriction protein res subunit [Spirochaeta sp. Buddy]
Length=1632

 Score = 79.7 bits (195),  Expect = 1e-13, Method: Composition-based stats.
 Identities = 34/59 (58%), Positives = 45/59 (77%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ WI+ERY+VT DKAS I NDPNDW  EH+ P YI+DL+  +  VSV+T+ IV+ L
Sbjct  1566  KSAIEWIMERYQVTVDKASQIKNDPNDWAREHNQPRYILDLLLSIINVSVQTVDIVNSL  1624


>gi|255015106|ref|ZP_05287232.1| putative helicase [Bacteroides sp. 2_1_7]
Length=1656

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 35/59 (60%), Positives = 45/59 (77%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ WI+ERY+V TD +S I NDPNDW  EHD+P YI+DL+  V  VSV+TM+IV  L
Sbjct  1592  KSAIEWIMERYQVKTDPSSLIKNDPNDWSREHDNPRYILDLLLSVINVSVQTMEIVKKL  1650


>gi|150008154|ref|YP_001302897.1| putative helicase [Parabacteroides distasonis ATCC 8503]
 gi|149936578|gb|ABR43275.1| putative helicase [Parabacteroides distasonis ATCC 8503]
Length=1664

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 35/59 (60%), Positives = 45/59 (77%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ WI+ERY+V TD +S I NDPNDW  EHD+P YI+DL+  V  VSV+TM+IV  L
Sbjct  1600  KSAIEWIMERYQVKTDPSSLIKNDPNDWSREHDNPRYILDLLLSVINVSVQTMEIVKKL  1658


>gi|262381266|ref|ZP_06074404.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296443|gb|EEY84373.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length=1665

 Score = 78.2 bits (191),  Expect = 3e-13, Method: Composition-based stats.
 Identities = 35/59 (60%), Positives = 45/59 (77%), Gaps = 0/59 (0%)

Query  38    RSALGWIIERYRVTTDKASGIVNDPNDWCDEHDDPTYIVDLIKKVTTVSVETMKIVDGL  96
             +SA+ WI+ERY+V TD +S I NDPNDW  EHD+P YI+DL+  V  VSV+TM+IV  L
Sbjct  1601  KSAIEWIMERYQVKTDPSSLIKNDPNDWSREHDNPRYILDLLLSVINVSVQTMEIVKKL  1659



Lambda     K      H
   0.320    0.136    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129711308684


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40