BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2021c

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609158|ref|NP_216537.1|  transcriptional regulatory protein ...   201    2e-50
gi|340627032|ref|YP_004745484.1|  putative transcriptional regula...   198    2e-49
gi|229492897|ref|ZP_04386693.1|  transcriptional regulator, XRE f...   103    1e-20
gi|255327117|ref|ZP_05368192.1|  transcriptional regulator [Rothi...  91.7    3e-17
gi|145294223|ref|YP_001137044.1|  hypothetical protein cgR_0179 [...  83.6    1e-14
gi|41410366|ref|NP_963202.1|  hypothetical protein MAP4268c [Myco...  78.6    3e-13
gi|311899627|dbj|BAJ32035.1|  putative transcriptional regulator ...  73.2    1e-11
gi|290956142|ref|YP_003487324.1|  transcriptional regulator [Stre...  72.4    2e-11
gi|213692218|ref|YP_002322804.1|  transcriptional regulator, XRE ...  71.6    3e-11
gi|302559948|ref|ZP_07312290.1|  xre family toxin-antitoxin syste...  70.5    8e-11
gi|139439319|ref|ZP_01772761.1|  Hypothetical protein COLAER_0177...  69.7    1e-10
gi|271968265|ref|YP_003342461.1|  XRE family transcriptional regu...  68.9    3e-10
gi|297159044|gb|ADI08756.1|  putative transcriptional regulator [...  68.6    3e-10
gi|271963921|ref|YP_003338117.1|  XRE family transcriptional regu...  67.8    5e-10
gi|329944098|ref|ZP_08292357.1|  DNA-binding helix-turn-helix pro...  67.8    5e-10
gi|257791669|ref|YP_003182275.1|  XRE family transcriptional regu...  66.2    1e-09
gi|290960636|ref|YP_003491818.1|  DNA-binding protein [Streptomyc...  65.9    2e-09
gi|15610319|ref|NP_217699.1|  transcriptional regulatory protein ...  63.9    8e-09
gi|308372449|ref|ZP_07428736.2|  transcriptional regulator [Mycob...  63.9    8e-09
gi|288917052|ref|ZP_06411423.1|  transcriptional regulator, XRE f...  63.5    1e-08
gi|302560054|ref|ZP_07312396.1|  helix-turn-helix domain-containi...  63.2    1e-08
gi|331695181|ref|YP_004331420.1|  helix-turn-helix domain-contain...  62.8    2e-08
gi|339445401|ref|YP_004711405.1|  hypothetical protein EGYY_18710...  61.2    5e-08
gi|300790532|ref|YP_003770823.1|  XRE family transcriptional regu...  59.7    1e-07
gi|320010824|gb|ADW05674.1|  helix-turn-helix domain protein [Str...  59.3    2e-07
gi|271967923|ref|YP_003342119.1|  helix-turn-helix domain-contain...  58.5    3e-07
gi|240169974|ref|ZP_04748633.1|  putative transcriptional regulat...  58.5    3e-07
gi|288920055|ref|ZP_06414374.1|  transcriptional regulator, XRE f...  58.5    4e-07
gi|271969745|ref|YP_003343941.1|  XRE family transcriptional regu...  57.8    5e-07
gi|302865475|ref|YP_003834112.1|  helix-turn-helix domain-contain...  57.8    6e-07
gi|308179150|ref|YP_003918556.1|  hypothetical protein AARI_33980...  57.4    7e-07
gi|291298156|ref|YP_003509434.1|  XRE family transcriptional regu...  57.0    9e-07
gi|315501167|ref|YP_004080054.1|  helix-turn-helix domain-contain...  57.0    1e-06
gi|312195719|ref|YP_004015780.1|  hypothetical protein FraEuI1c_1...  55.8    2e-06
gi|336176261|ref|YP_004581636.1|  helix-turn-helix domain-contain...  55.1    4e-06
gi|300721600|ref|YP_003710875.1|  Cro-like protein [Xenorhabdus n...  54.7    4e-06
gi|254552276|ref|ZP_05142723.1|  transcriptional regulator [Mycob...  54.7    5e-06
gi|121609386|ref|YP_997193.1|  helix-turn-helix domain-containing...  53.5    9e-06
gi|288919655|ref|ZP_06413983.1|  transcriptional regulator, XRE f...  53.5    1e-05
gi|158317564|ref|YP_001510072.1|  XRE family transcriptional regu...  53.5    1e-05
gi|302559460|ref|ZP_07311802.1|  xre family toxin-antitoxin syste...  53.5    1e-05
gi|86741569|ref|YP_481969.1|  XRE family transcriptional regulato...  52.8    2e-05
gi|302550878|ref|ZP_07303220.1|  predicted protein [Streptomyces ...  52.8    2e-05
gi|297563266|ref|YP_003682240.1|  XRE family transcriptional regu...  52.4    2e-05
gi|329295509|ref|ZP_08252845.1|  XRE family transcriptional regul...  52.4    2e-05
gi|298717325|ref|YP_003729967.1|  HTH-type transcriptional regula...  52.0    3e-05
gi|338821107|gb|EGP55076.1|  DNA-binding protein, putative [Agrob...  51.6    4e-05
gi|256397406|ref|YP_003118970.1|  XRE family transcriptional regu...  50.8    6e-05
gi|271968262|ref|YP_003342458.1|  XRE family transcriptional regu...  50.8    6e-05
gi|295105862|emb|CBL03405.1|  Helix-turn-helix. [Gordonibacter pa...  50.4    8e-05


>gi|15609158|ref|NP_216537.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15841504|ref|NP_336541.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
 gi|31793201|ref|NP_855694.1| hypothetical protein Mb2044c [Mycobacterium bovis AF2122/97]
 75 more sequence titles
 Length=101

 Score =  201 bits (512),  Expect = 2e-50, Method: Compositional matrix adjust.
 Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  1    MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
            MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV
Sbjct  1    MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60

Query  61   SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA
Sbjct  61   SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101


>gi|340627032|ref|YP_004745484.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
 gi|340005222|emb|CCC44376.1| putative transcriptional regulatory protein [Mycobacterium canettii 
CIPT 140010059]
Length=101

 Score =  198 bits (503),  Expect = 2e-49, Method: Compositional matrix adjust.
 Identities = 99/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)

Query  1    MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
            MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVA LAHIRQSRV
Sbjct  1    MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAELAHIRQSRV  60

Query  61   SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            SSIENGDIG+AQVNTLRKYVSALGGELDITVRLGDETFTLA
Sbjct  61   SSIENGDIGTAQVNTLRKYVSALGGELDITVRLGDETFTLA  101


>gi|229492897|ref|ZP_04386693.1| transcriptional regulator, XRE family [Rhodococcus erythropolis 
SK121]
 gi|229320171|gb|EEN85996.1| transcriptional regulator, XRE family [Rhodococcus erythropolis 
SK121]
Length=104

 Score =  103 bits (256),  Expect = 1e-20, Method: Compositional matrix adjust.
 Identities = 52/101 (52%), Positives = 72/101 (72%), Gaps = 0/101 (0%)

Query  1    MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
            MA +L DM   RPV+R AVD HK R+ +EVRA+RL+ELR   +LTQ +VA    + Q+R+
Sbjct  4    MAKSLDDMLNARPVDRSAVDAHKGRLLEEVRAYRLKELRKNAALTQGEVADRLGVGQNRI  63

Query  61   SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            S+IE GD+   Q++TLR+YV A+GG L + V LGD+ F +A
Sbjct  64   SNIERGDLARIQIDTLRRYVEAVGGSLRVEVELGDDRFHIA  104


>gi|255327117|ref|ZP_05368192.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
 gi|255295735|gb|EET75077.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
Length=102

 Score = 91.7 bits (226),  Expect = 3e-17, Method: Compositional matrix adjust.
 Identities = 48/102 (48%), Positives = 65/102 (64%), Gaps = 3/102 (2%)

Query  3    MTLRDMD---AVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSR  59
            MT   MD   A+RP NREAVD     M  EVRA+RLRELR    +TQ  +AA  ++ Q+ 
Sbjct  1    MTTSVMDELYALRPYNREAVDALTEEMIAEVRAYRLRELREQAQMTQQNIAAELNVSQNS  60

Query  60   VSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            VS +E GD+   Q++TL++Y+ ALGG+L I    GD ++ LA
Sbjct  61   VSKLERGDLDKTQISTLKRYIEALGGKLSIEANFGDTSYRLA  102


>gi|145294223|ref|YP_001137044.1| hypothetical protein cgR_0179 [Corynebacterium glutamicum R]
 gi|140844143|dbj|BAF53142.1| hypothetical protein [Corynebacterium glutamicum R]
Length=113

 Score = 83.6 bits (205),  Expect = 1e-14, Method: Compositional matrix adjust.
 Identities = 46/98 (47%), Positives = 65/98 (67%), Gaps = 1/98 (1%)

Query  5    LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE  64
            L D+   RP NRE +DR KA M  + +A+RLR LR    LTQ  +A    + Q+R+S IE
Sbjct  4    LPDLHRRRPGNRENIDRIKAGMYSDAKAYRLRTLREESGLTQESLAKKIGVGQNRISQIE  63

Query  65   NGDIGSAQVNTLRKYVSALGGELDITVRLGD-ETFTLA  101
            +G + SA+V+T++KYV+ALGG L++TV+  D  T TL 
Sbjct  64   HGHLTSARVSTVQKYVAALGGSLELTVKRADGSTVTLP  101


>gi|41410366|ref|NP_963202.1| hypothetical protein MAP4268c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399200|gb|AAS06818.1| hypothetical protein MAP_4268c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336460763|gb|EGO39650.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=102

 Score = 78.6 bits (192),  Expect = 3e-13, Method: Compositional matrix adjust.
 Identities = 46/91 (51%), Positives = 62/91 (69%), Gaps = 0/91 (0%)

Query  5   LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE  64
           L DM   RP NR  +D  KA M  EV  +RLRELR A   TQ  +AA   + Q+RVS +E
Sbjct  4   LDDMRRRRPGNRTRIDAIKAEMDREVAQYRLRELREAAGYTQTTLAAAIGVGQNRVSQME  63

Query  65  NGDIGSAQVNTLRKYVSALGGELDITVRLGD  95
           +GD+G+++V+TLRKYV A GGEL+++V+  D
Sbjct  64  HGDLGTSRVDTLRKYVEATGGELEVSVKRPD  94


>gi|311899627|dbj|BAJ32035.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
Length=103

 Score = 73.2 bits (178),  Expect = 1e-11, Method: Compositional matrix adjust.
 Identities = 40/95 (43%), Positives = 55/95 (58%), Gaps = 0/95 (0%)

Query  1   MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
           MA + +D+      + E V  H+ R+  EVRA+RL E+R  Q LTQ +VA L  + Q  V
Sbjct  3   MARSWKDVRTEVVTDEERVAAHRTRLDAEVRAYRLAEIRREQDLTQTEVAELIGVTQPNV  62

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGD  95
           S +E GD+    + TLR+YV ALGG L +    GD
Sbjct  63  SRLERGDLEGTSLGTLREYVEALGGRLHLVADFGD  97


>gi|290956142|ref|YP_003487324.1| transcriptional regulator [Streptomyces scabiei 87.22]
 gi|260645668|emb|CBG68759.1| putative transcriptional regulatory protein [Streptomyces scabiei 
87.22]
Length=111

 Score = 72.4 bits (176),  Expect = 2e-11, Method: Compositional matrix adjust.
 Identities = 37/97 (39%), Positives = 57/97 (59%), Gaps = 0/97 (0%)

Query  5    LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE  64
            L++     P  ++ + +  A +  EVRA+RL E+R  Q +TQ  VA +  + Q RVS+IE
Sbjct  15   LKEEFGFSPEEQKEIAQGTAALLSEVRAYRLAEVRKRQHMTQTAVAKILGVTQGRVSAIE  74

Query  65   NGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
             G +  ++V+TL  YV ALGG+L +    GDE+  L 
Sbjct  75   KGALSRSEVDTLAAYVEALGGKLKLVADFGDESLVLG  111


>gi|213692218|ref|YP_002322804.1| transcriptional regulator, XRE family [Bifidobacterium longum 
subsp. infantis ATCC 15697]
 gi|213523679|gb|ACJ52426.1| putative transcriptional regulator, XRE family [Bifidobacterium 
longum subsp. infantis ATCC 15697]
 gi|320458344|dbj|BAJ68965.1| conserved hypothetical protein [Bifidobacterium longum subsp. 
infantis ATCC 15697]
Length=102

 Score = 71.6 bits (174),  Expect = 3e-11, Method: Compositional matrix adjust.
 Identities = 36/95 (38%), Positives = 58/95 (62%), Gaps = 0/95 (0%)

Query  1   MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
           M+ T     A   ++RE +D  K R+ +EVR + L+E R  Q +TQ Q+A    + Q RV
Sbjct  1   MSYTPEQFAADSGISREEIDAAKNRLLEEVRLYELKEARKRQDVTQKQLAERMGVSQKRV  60

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGD  95
           SS+E+GD+   ++ TLR+Y+ A+GG+L +   + D
Sbjct  61  SSLESGDVDKTEIRTLRRYLDAIGGKLQVNAVMPD  95


>gi|302559948|ref|ZP_07312290.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
griseoflavus Tu4000]
 gi|302477566|gb|EFL40659.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
griseoflavus Tu4000]
Length=112

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 38/77 (50%), Positives = 51/77 (67%), Gaps = 0/77 (0%)

Query  25   RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALG  84
            R+  EVRA +L E+R  Q+LTQ QVAA   +   RVS+IE+G++  A+V TLR YV ALG
Sbjct  36   RLTAEVRAHKLAEVRREQALTQRQVAASMGVSAPRVSAIEHGELDRAEVATLRAYVEALG  95

Query  85   GELDITVRLGDETFTLA  101
            G L +    GD  +T+A
Sbjct  96   GRLRVVADFGDAEYTVA  112


>gi|139439319|ref|ZP_01772761.1| Hypothetical protein COLAER_01777 [Collinsella aerofaciens ATCC 
25986]
 gi|133775343|gb|EBA39163.1| Hypothetical protein COLAER_01777 [Collinsella aerofaciens ATCC 
25986]
Length=100

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 35/99 (36%), Positives = 59/99 (60%), Gaps = 0/99 (0%)

Query  3    MTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSS  62
            M L +    R + R+++   + R RD + A++L ++R  + LTQ  VA    + Q RVS 
Sbjct  1    MELHEYMESRGITRDSITAEQERTRDRIEAYKLAQIRRLKDLTQASVAQSMGVSQKRVSE  60

Query  63   IENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            +E G++GS +++TL +Y  +LGG+L  ++   D T TLA
Sbjct  61   LERGELGSMRLDTLSRYAESLGGKLVASIEFPDRTVTLA  99


>gi|271968265|ref|YP_003342461.1| XRE family transcriptional regulator [Streptosporangium roseum 
DSM 43021]
 gi|270511440|gb|ACZ89718.1| putative transcriptional regulator, XRE family [Streptosporangium 
roseum DSM 43021]
Length=109

 Score = 68.9 bits (167),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 33/72 (46%), Positives = 47/72 (66%), Gaps = 0/72 (0%)

Query  30   VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDI  89
            V  + L+ELR +   TQ  VAA   I QSRVS IENGD+ + ++ TLR Y +ALGG +D+
Sbjct  38   VAGYHLKELRKSLGKTQADVAAALGISQSRVSQIENGDLDAMELETLRAYAAALGGHVDV  97

Query  90   TVRLGDETFTLA  101
            T+ +G  +  +A
Sbjct  98   TISVGPHSVKVA  109


>gi|297159044|gb|ADI08756.1| putative transcriptional regulator [Streptomyces bingchenggensis 
BCW-1]
Length=112

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 41/91 (46%), Positives = 58/91 (64%), Gaps = 3/91 (3%)

Query  13   PVNREAVDRHKA--RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGS  70
            PV R A ++  A  R+  EVRA +L E+R  Q+LTQ QVAA   +   RVS+IE+G++  
Sbjct  23   PV-RSAEEKQAAMDRLTAEVRAHKLAEVRREQALTQRQVAASMGVSAPRVSAIEHGELDR  81

Query  71   AQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            A++ T+R YV ALGG L +    GD  +T+A
Sbjct  82   AELATIRSYVEALGGRLRVVADFGDAEYTVA  112


>gi|271963921|ref|YP_003338117.1| XRE family transcriptional regulator [Streptosporangium roseum 
DSM 43021]
 gi|270507096|gb|ACZ85374.1| putative transcriptional regulator, XRE family [Streptosporangium 
roseum DSM 43021]
Length=110

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 39/95 (42%), Positives = 61/95 (65%), Gaps = 9/95 (9%)

Query  9    DAVRPVNREAVDRHKARMRDE--VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENG  66
            DA R V +EA     AR R E  VR ++L E+R A  +TQV++A    + Q+R+S IENG
Sbjct  23   DAERAVGQEA-----ARQRREAYVRGYQLAEMRKAAGITQVELAEALGVTQARISKIENG  77

Query  67   DIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            ++  + ++ +R YV+ALGG +D+   LG+ T+ +A
Sbjct  78   EV--SGIDVVRAYVTALGGTVDLVATLGNRTWKVA  110


>gi|329944098|ref|ZP_08292357.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 
170 str. F0386]
 gi|328530828|gb|EGF57684.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon 
170 str. F0386]
Length=155

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 38/89 (43%), Positives = 55/89 (62%), Gaps = 4/89 (4%)

Query  2    AMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVS  61
             MT+ ++    PV+RE VD H+ +M  E+RA+RLRE      LTQ Q+A    + Q RVS
Sbjct  39   PMTITELLEEHPVDREEVDTHEEQMLTEIRAYRLRE---QTGLTQAQLADRIGVGQCRVS  95

Query  62   SIENGDIGS-AQVNTLRKYVSALGGELDI  89
             IE GD+   +++ T+R Y+ A+GG L I
Sbjct  96   KIERGDLEEDSKIGTIRLYLEAVGGHLSI  124


>gi|257791669|ref|YP_003182275.1| XRE family transcriptional regulator [Eggerthella lenta DSM 2243]
 gi|317487865|ref|ZP_07946457.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
 gi|325830628|ref|ZP_08164049.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
 gi|257475566|gb|ACV55886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM 
2243]
 gi|316912991|gb|EFV34508.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
 gi|325487374|gb|EGC89816.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
Length=123

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 31/93 (34%), Positives = 58/93 (63%), Gaps = 1/93 (1%)

Query  2   AMTLRDMDAVRP-VNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
           ++++ +    RP +  E ++  +  +  +++ + L++ R A  +TQ +VAA   + Q R+
Sbjct  4   SLSIEEFLETRPDITPEMLEEGRLLVEAKIKGYELQQARKACGMTQKEVAAKMGVSQKRI  63

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDITVRL  93
           S +ENG I   QV TLR+Y+++LGG L+IT +L
Sbjct  64  SDLENGSIDVMQVETLRRYITSLGGTLEITAKL  96


>gi|290960636|ref|YP_003491818.1| DNA-binding protein [Streptomyces scabiei 87.22]
 gi|260650162|emb|CBG73278.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
Length=112

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 35/71 (50%), Positives = 44/71 (62%), Gaps = 0/71 (0%)

Query  31   RAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDIT  90
            R  RL ELR  Q  TQVQVA    + Q+RVS IE G +  ++V+TL  YV ALGG+L I 
Sbjct  42   RVHRLAELRKRQHTTQVQVAEAMGVTQARVSRIEKGQLERSEVDTLAAYVKALGGKLKIV  101

Query  91   VRLGDETFTLA  101
               GDE++ L 
Sbjct  102  ADFGDESYVLG  112


>gi|15610319|ref|NP_217699.1| transcriptional regulatory protein [Mycobacterium tuberculosis 
H37Rv]
 gi|15842764|ref|NP_337801.1| hypothetical protein MT3275 [Mycobacterium tuberculosis CDC1551]
 gi|31794361|ref|NP_856854.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
 61 more sequence titles
 Length=109

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 46/107 (43%), Positives = 60/107 (57%), Gaps = 9/107 (8%)

Query  1    MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA  53
            MA   RD+  DAV      + R AV R +  MRD V A RL E+R A     Q  VAAL 
Sbjct  3    MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM  60

Query  54   HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL  100
             + Q+RVS +E+GD+   ++ TL+ YV+ALGG L I    G+ T  L
Sbjct  61   GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL  107


>gi|308372449|ref|ZP_07428736.2| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
 gi|308374797|ref|ZP_07437440.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
 gi|308376015|ref|ZP_07445835.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
 15 more sequence titles
 Length=107

 Score = 63.9 bits (154),  Expect = 8e-09, Method: Compositional matrix adjust.
 Identities = 46/107 (43%), Positives = 60/107 (57%), Gaps = 9/107 (8%)

Query  1    MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA  53
            MA   RD+  DAV      + R AV R +  MRD V A RL E+R A     Q  VAAL 
Sbjct  1    MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM  58

Query  54   HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL  100
             + Q+RVS +E+GD+   ++ TL+ YV+ALGG L I    G+ T  L
Sbjct  59   GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL  105


>gi|288917052|ref|ZP_06411423.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288351592|gb|EFC85798.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=108

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 38/90 (43%), Positives = 52/90 (58%), Gaps = 5/90 (5%)

Query  17   EAVDRHKA-----RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA  71
            E  DRH+      R+  E RA RL E+R    LTQ +VA   H+RQ RVS+IE  +I ++
Sbjct  19   EEHDRHEVEAGAERLVAENRAHRLAEMRRRLGLTQAEVADRMHVRQERVSAIERANIDAS  78

Query  72   QVNTLRKYVSALGGELDITVRLGDETFTLA  101
            ++ TL  YV ALGG+L+I    G E   + 
Sbjct  79   ELRTLAAYVKALGGQLEIIADFGGERLVIG  108


>gi|302560054|ref|ZP_07312396.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus 
Tu4000]
 gi|302477672|gb|EFL40765.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus 
Tu4000]
Length=101

 Score = 63.2 bits (152),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 41/97 (43%), Positives = 50/97 (52%), Gaps = 5/97 (5%)

Query  3   MTLRDMDA----VRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQS  58
           M L  MD     + P  RE +D  KA M D  R   L  LR AQ  TQVQVA    + Q 
Sbjct  1   MNLGSMDDLTADITPEKRERIDAIKAEMIDAERGHELATLRKAQGFTQVQVAKAMGVTQG  60

Query  59  RVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGD  95
           RVS IE G       +T+  Y+ A+GGEL IT  +G+
Sbjct  61  RVSQIERG-TARLDTSTMAAYLHAIGGELTITATVGN  96


>gi|331695181|ref|YP_004331420.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans 
CB1190]
 gi|326949870|gb|AEA23567.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans 
CB1190]
Length=102

 Score = 62.8 bits (151),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 38/93 (41%), Positives = 51/93 (55%), Gaps = 2/93 (2%)

Query  9    DAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDI  68
            + V     E V++ K R+  +VRA RL E R  + LTQ QVA    +   RVS IENG++
Sbjct  12   EHVAAAGEERVEQGKTRLLGQVRAHRLAETRKRRGLTQRQVAQAMGVTVGRVSQIENGEL  71

Query  69   GSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
              A ++ L +YV ALGG L I    GDE   + 
Sbjct  72   --AGIDVLDRYVHALGGHLQIVANFGDEQIKVG  102


>gi|339445401|ref|YP_004711405.1| hypothetical protein EGYY_18710 [Eggerthella sp. YY7918]
 gi|338905153|dbj|BAK45004.1| hypothetical protein EGYY_18710 [Eggerthella sp. YY7918]
Length=111

 Score = 61.2 bits (147),  Expect = 5e-08, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 46/72 (64%), Gaps = 0/72 (0%)

Query  29   EVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELD  88
            +++ + L++ R A  +TQ ++AA   + Q R+S +ENG I   QV+TLR+Y++ LGG L+
Sbjct  32   KIKGYELQQARKACHITQKELAAQMGVSQKRISDLENGSIDVMQVDTLRRYIAGLGGTLE  91

Query  89   ITVRLGDETFTL  100
            I  +L   T  L
Sbjct  92   INAKLPQGTIQL  103


>gi|300790532|ref|YP_003770823.1| XRE family transcriptional regulator [Amycolatopsis mediterranei 
U32]
 gi|299800046|gb|ADJ50421.1| XRE family transcriptional regulator [Amycolatopsis mediterranei 
U32]
 gi|340532217|gb|AEK47422.1| XRE family transcriptional regulator [Amycolatopsis mediterranei 
S699]
Length=121

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 33/96 (35%), Positives = 53/96 (56%), Gaps = 7/96 (7%)

Query  6    RDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIEN  65
            RD+DA R   REA + +       V  FRL +LR    ++Q ++A    + Q R+S +E 
Sbjct  22   RDVDAARIAAREATEAY-------VLGFRLAQLREDAGVSQTELARSMGVSQPRISQLEQ  74

Query  66   GDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA  101
            GD G   ++TLR+Y++ALGG + +     D   T++
Sbjct  75   GDPGQMALDTLRRYITALGGRMRVVADFDDRDVTVS  110


>gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC 
33331]
Length=101

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/90 (38%), Positives = 48/90 (54%), Gaps = 1/90 (1%)

Query  11   VRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGS  70
            + P  R  +D  K+ M D  R   L  LR AQ +TQVQVA    + Q R+S IE G +  
Sbjct  13   ITPEKRARIDAIKSEMVDAERGHELASLRKAQGMTQVQVAKAMGVTQGRISQIERGGV-R  71

Query  71   AQVNTLRKYVSALGGELDITVRLGDETFTL  100
               +T+  Y+ A+GGEL I   +G+ +  L
Sbjct  72   LDTSTMSAYLHAIGGELTILATVGNVSVKL  101


>gi|271967923|ref|YP_003342119.1| helix-turn-helix domain-containing protein [Streptosporangium 
roseum DSM 43021]
 gi|270511098|gb|ACZ89376.1| helix-turn-helix domain protein [Streptosporangium roseum DSM 
43021]
Length=102

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 36/84 (43%), Positives = 50/84 (60%), Gaps = 3/84 (3%)

Query  18   AVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLR  77
            A+DR  A   + V A RL  +R    L QV VA   H+RQ RVS+IE G+  SA ++TL 
Sbjct  22   AIDRGAA---ETVAAVRLAAMRKQLGLRQVDVAERMHVRQERVSAIERGEPTSATLSTLI  78

Query  78   KYVSALGGELDITVRLGDETFTLA  101
             YV ALGG+L++   + D  + +A
Sbjct  79   AYVRALGGQLEVVATVDDTRYKIA  102


>gi|240169974|ref|ZP_04748633.1| putative transcriptional regulatory protein [Mycobacterium kansasii 
ATCC 12478]
Length=109

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 33/82 (41%), Positives = 48/82 (59%), Gaps = 1/82 (1%)

Query  20   DRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALAHIRQSRVSSIENGDIGSAQVNTLRK  78
            D  +  M D V+A RL ++R A     Q  VAAL  + Q+RVS +E+GD+   ++ TL+ 
Sbjct  26   DAARKEMHDAVQAQRLADIRKAHGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQS  85

Query  79   YVSALGGELDITVRLGDETFTL  100
            YV+ALGG L I    G+ +  L
Sbjct  86   YVAALGGNLRIVADFGESSVEL  107


>gi|288920055|ref|ZP_06414374.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288348538|gb|EFC82796.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=109

 Score = 58.5 bits (140),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 34/90 (38%), Positives = 53/90 (59%), Gaps = 5/90 (5%)

Query  15   NREAVDRH---KARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA  71
            N E V+R    +A+M   V   +L E+R    +TQ Q+A    + Q+R+S IENG  G+ 
Sbjct  22   NAERVERRAEMRAQMLASVSGAQLAEIRRQLGVTQTQLAEATGLTQARISQIENG--GAM  79

Query  72   QVNTLRKYVSALGGELDITVRLGDETFTLA  101
             ++TLR Y++ LGG LD+  R+G+    +A
Sbjct  80   GLDTLRAYITGLGGHLDVVARIGNIQLNIA  109


>gi|271969745|ref|YP_003343941.1| XRE family transcriptional regulator [Streptosporangium roseum 
DSM 43021]
 gi|270512920|gb|ACZ91198.1| putative transcriptional regulator, XRE family [Streptosporangium 
roseum DSM 43021]
Length=106

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 35/87 (41%), Positives = 52/87 (60%), Gaps = 5/87 (5%)

Query  18   AVDRHKA---RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVN  74
             V+R +A    +R+E +A+RL E+R  + LTQ QVA    +   RVS IE GD+ + +V 
Sbjct  22   GVERFEAETLHLREEAQAWRLAEMRKRRGLTQNQVAENMGVSVGRVSQIEKGDVSTREV-  80

Query  75   TLRKYVSALGGELDITVRLGDETFTLA  101
             L +YV+ALGG L +    GDE   ++
Sbjct  81   -LDRYVAALGGTLKLIADFGDEQLKVS  106


>gi|302865475|ref|YP_003834112.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca 
ATCC 27029]
 gi|315502022|ref|YP_004080909.1| helix-turn-helix domain-containing protein [Micromonospora sp. 
L5]
 gi|302568334|gb|ADL44536.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC 
27029]
 gi|315408641|gb|ADU06758.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=103

 Score = 57.8 bits (138),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 35/80 (44%), Positives = 44/80 (55%), Gaps = 0/80 (0%)

Query  17  EAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTL  76
           EA +  +AR    V AF L E R    LTQ QVA +  +   RVS IENGD+   +V TL
Sbjct  19  EAYEAERARTDAWVSAFHLAEERKRLGLTQRQVAEIMGVTPGRVSQIENGDLDVNEVATL  78

Query  77  RKYVSALGGELDITVRLGDE  96
            +Y +ALG  L I    GD+
Sbjct  79  SRYANALGARLRIIFDYGDD  98


>gi|308179150|ref|YP_003918556.1| hypothetical protein AARI_33980 [Arthrobacter arilaitensis Re117]
 gi|307746613|emb|CBT77585.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis 
Re117]
Length=101

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 31/89 (35%), Positives = 49/89 (56%), Gaps = 0/89 (0%)

Query  1   MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
           M     D + +    REAV  H+  ++ E R   LR LR    L+QVQVA++  +   R+
Sbjct  1   MGFAYADPEVLTQQQREAVAEHRRHVQHESRRLSLRALREEAELSQVQVASVMKLSVDRI  60

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDI  89
           + +E GD+   Q++TLR+Y  +LG  L +
Sbjct  61  ARMETGDLDRVQLSTLRRYAESLGARLQV  89


>gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis 
DSM 44728]
 gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis 
DSM 44728]
Length=101

 Score = 57.0 bits (136),  Expect = 9e-07, Method: Compositional matrix adjust.
 Identities = 38/96 (40%), Positives = 47/96 (49%), Gaps = 5/96 (5%)

Query  3   MTLRDMD----AVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQS  58
           M LRDM      +    R  +D  K  M D  R   L  LR AQ LTQ QVA    + Q 
Sbjct  1   MELRDMSELTSGISTEQRARIDAIKQEMIDAERGHELASLRKAQGLTQSQVAEAMGVTQG  60

Query  59  RVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLG  94
           R+S IE+G        T+  Y+ A+GGEL IT  +G
Sbjct  61  RISQIESGKT-RLDTETMAAYLHAIGGELTITATVG  95


>gi|315501167|ref|YP_004080054.1| helix-turn-helix domain-containing protein [Micromonospora sp. 
L5]
 gi|315407786|gb|ADU05903.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=106

 Score = 57.0 bits (136),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 32/84 (39%), Positives = 48/84 (58%), Gaps = 2/84 (2%)

Query  18   AVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLR  77
            A +     M D+ R +RL ELR  + +TQ QVA+   +  +RVS IE G++ + +V  L 
Sbjct  25   AFEAEVGEMLDQARGWRLAELRKRREMTQEQVASRMGVSVARVSQIEAGNVATQEV--LA  82

Query  78   KYVSALGGELDITVRLGDETFTLA  101
            +Y+ ALGG L +    GDE   +A
Sbjct  83   RYIGALGGTLKLIADFGDEQLKVA  106


>gi|312195719|ref|YP_004015780.1| hypothetical protein FraEuI1c_1854 [Frankia sp. EuI1c]
 gi|311227055|gb|ADP79910.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
Length=104

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 35/85 (42%), Positives = 45/85 (53%), Gaps = 0/85 (0%)

Query  17   EAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTL  76
            EA+   +AR    + AF L E R    LTQ QVA    +   RVS IENGD+ + +V TL
Sbjct  20   EALAAERARTEAWISAFHLAEERTRLGLTQRQVAESMGVSPGRVSQIENGDLDANEVATL  79

Query  77   RKYVSALGGELDITVRLGDETFTLA  101
             +Y  ALG  L I    G+E   +A
Sbjct  80   SRYARALGARLRIIFDYGNELHQIA  104


>gi|336176261|ref|YP_004581636.1| helix-turn-helix domain-containing protein [Frankia symbiont 
of Datisca glomerata]
 gi|334857241|gb|AEH07715.1| helix-turn-helix domain protein [Frankia symbiont of Datisca 
glomerata]
Length=104

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 37/96 (39%), Positives = 49/96 (52%), Gaps = 4/96 (4%)

Query  5   LRDMDAVRPV----NREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
             D D +R      + EA+   +AR    V AF L E R    LTQ QVA L  +   RV
Sbjct  4   FHDWDDIRAELHDGDGEALAAERARTEAWVSAFHLAEERRRLGLTQRQVAELMGVSPGRV  63

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDE  96
           S IENGD+ + +V TL +Y  ALG  + I    G++
Sbjct  64  SQIENGDLDANEVATLSRYARALGARMRIIFDYGND  99


>gi|300721600|ref|YP_003710875.1| Cro-like protein [Xenorhabdus nematophila ATCC 19061]
 gi|297628092|emb|CBJ88643.1| Cro-like protein [Xenorhabdus nematophila ATCC 19061]
Length=99

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 34/94 (37%), Positives = 59/94 (63%), Gaps = 7/94 (7%)

Query  4   TLRDMDAVR-PVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSS  62
           TL+++ A R P ++  ++   A M  E + +++RE   A +L+Q QVA    I QS V++
Sbjct  3   TLKELMAKRSPESQAKIEEKAAEMLLETQLYQIRE---ALALSQTQVAKNLGIAQSSVAA  59

Query  63  IEN-GDIGSAQVNTLRKYVSALGGELDITVRLGD  95
           IE  G+    +++TL+KY+ A+GGE+ + V+L D
Sbjct  60  IEQRGN--ELKISTLKKYIEAMGGEMTLGVKLPD  91


>gi|254552276|ref|ZP_05142723.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604 
INH-RIF-EM']
Length=98

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 41/93 (45%), Positives = 54/93 (59%), Gaps = 9/93 (9%)

Query  1   MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA  53
           MA   RD+  DAV      + R AV R +  MRD V A RL E+R A     Q  VAAL 
Sbjct  3   MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM  60

Query  54  HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGE  86
            + Q+RVS +E+GD+   ++ TL+ YV+ALGG 
Sbjct  61  GVSQARVSKLESGDLSHTELGTLQAYVAALGGH  93


>gi|121609386|ref|YP_997193.1| helix-turn-helix domain-containing protein [Verminephrobacter 
eiseniae EF01-2]
 gi|121554026|gb|ABM58175.1| helix-turn-helix domain protein [Verminephrobacter eiseniae EF01-2]
Length=103

 Score = 53.5 bits (127),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 29/62 (47%), Positives = 40/62 (65%), Gaps = 2/62 (3%)

Query  34  RLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRL  93
           +L+ELR A+ +TQV+VA    + Q+ VS +E+ D     V+TLRKYV ALGGEL +    
Sbjct  32  QLQELRKARKVTQVEVAKAMSVEQAAVSKLEHRD--DMYVSTLRKYVKALGGELKLVASF  89

Query  94  GD  95
            D
Sbjct  90  PD  91


>gi|288919655|ref|ZP_06413983.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
 gi|288348944|gb|EFC83193.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=104

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 35/96 (37%), Positives = 47/96 (49%), Gaps = 4/96 (4%)

Query  5   LRDMDAVRPVNR----EAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
             D D +R        EA+   + R    + AF L E R    LTQ +VA L  +   RV
Sbjct  4   FHDWDDIRAEQHDGDDEALAAERGRTEAWISAFHLAEERKRLGLTQREVAELMGVSPGRV  63

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDE  96
           S IENGD+ + +V TL +Y  ALG  L I    G++
Sbjct  64  SQIENGDLDANEVATLSRYARALGARLRIIFDYGND  99


>gi|158317564|ref|YP_001510072.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
 gi|158112969|gb|ABW15166.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
Length=104

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 35/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)

Query  5   LRDMDAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV  60
             D D +R      + EA+   + R    + AF L E R    LTQ +VA L  +   RV
Sbjct  4   FHDWDDIRADLHDGDDEALAAERGRTEAWISAFHLAEERKRLGLTQREVAELMGVSPGRV  63

Query  61  SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDE  96
           S IENGD+ + +V TL +Y  ALG  L I    G++
Sbjct  64  SQIENGDLDANEVATLSRYARALGARLRIIFDYGND  99


>gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
griseoflavus Tu4000]
 gi|302477078|gb|EFL40171.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces 
griseoflavus Tu4000]
Length=110

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 30/68 (45%), Positives = 40/68 (59%), Gaps = 2/68 (2%)

Query  30   VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDI  89
            V    LRE+R  Q LTQ QVAA   I Q+RVS IE G+I +  + T+R Y  ALG  + +
Sbjct  41   VVGHHLREIREEQGLTQGQVAASVGISQARVSQIERGEIHN--LETMRAYAEALGARITV  98

Query  90   TVRLGDET  97
            T+  G  +
Sbjct  99   TIEYGGPS  106


>gi|86741569|ref|YP_481969.1| XRE family transcriptional regulator [Frankia sp. CcI3]
 gi|86568431|gb|ABD12240.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
Length=109

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query  23   KARMRDE--VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYV  80
            +AR R++  +   RL E R    LTQ +VA    + +SRVS IE GD+ +  V+ + +YV
Sbjct  24   EARRRNQAYIDGHRLAERRRLLGLTQTEVAEHMGVSKSRVSQIERGDVST--VDVIARYV  81

Query  81   SALGGELDITVRLGDETFTL  100
             ALGG++ IT   GD+ + L
Sbjct  82   QALGGQIQITAVFGDDLYIL  101


>gi|302550878|ref|ZP_07303220.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
 gi|302468496|gb|EFL31589.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
Length=117

 Score = 52.8 bits (125),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 28/69 (41%), Positives = 40/69 (58%), Gaps = 0/69 (0%)

Query  32   AFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITV  91
               L ELR  + LTQ +VA    + Q RVS +ENGDI   QV ++  Y++ALGG L +  
Sbjct  40   GHHLAELRRQRGLTQAEVAEKMGVSQVRVSHMENGDIDRMQVESIAAYIAALGGHLRLVA  99

Query  92   RLGDETFTL  100
             +G+ + T 
Sbjct  100  DIGEVSTTF  108


>gi|297563266|ref|YP_003682240.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei 
subsp. dassonvillei DSM 43111]
 gi|296847714|gb|ADH69734.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei 
subsp. dassonvillei DSM 43111]
Length=135

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 32/81 (40%), Positives = 47/81 (59%), Gaps = 2/81 (2%)

Query  20   DRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKY  79
            D   AR+  E + + L  LR     TQ +VA +  + Q+R+S IE+G I S ++  LR Y
Sbjct  30   DAETARIEAERQGYALSSLRKESGRTQKEVAQIMGVSQARISQIEHGRIDSLEL--LRSY  87

Query  80   VSALGGELDITVRLGDETFTL  100
            +SA+GGEL + V  G  + TL
Sbjct  88   ISAIGGELHLRVDQGPLSVTL  108


>gi|329295509|ref|ZP_08252845.1| XRE family transcriptional regulator [Plautia stali symbiont]
Length=99

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 37/94 (40%), Positives = 58/94 (62%), Gaps = 7/94 (7%)

Query  5   LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE  64
           L D+ A R    +A  R+KA   +++   RLR+LR   +L+QVQ+A    + Q  +++IE
Sbjct  4   LEDLIAQRSPESQARIRNKAA--EKILEIRLRQLREELALSQVQLAEKMGVSQPAIAAIE  61

Query  65  -NGDIGSAQVNTLRKYVSALGGELDITVRL--GD  95
             GD    ++++L+KYV ALGG+L +TV L  GD
Sbjct  62  ARGD--ELKLSSLKKYVEALGGKLSVTVELPAGD  93


>gi|298717325|ref|YP_003729967.1| HTH-type transcriptional regulator PuuR [Pantoea vagans C9-1]
 gi|298361514|gb|ADI78295.1| HTH-type transcriptional regulator puuR [Pantoea vagans C9-1]
Length=99

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 34/93 (37%), Positives = 55/93 (60%), Gaps = 5/93 (5%)

Query  4   TLRDMDAVRPV-NREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSS  62
           TL++M A R   +R  ++   A +R E+   RLRE     S++Q  +A +  ++Q  V+ 
Sbjct  3   TLKEMMAKRSSQSRTRIESRAAEIRQEITLARLRE---ELSVSQTHLAEVLGVKQPSVAK  59

Query  63  IENGDIGSAQVNTLRKYVSALGGELDITVRLGD  95
           IEN D    +++TLR+Y++ LGGEL + V L D
Sbjct  60  IENVD-NDPKLSTLRRYIAGLGGELTLDVTLPD  91


>gi|338821107|gb|EGP55076.1| DNA-binding protein, putative [Agrobacterium tumefaciens F2]
Length=127

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 35/94 (38%), Positives = 52/94 (56%), Gaps = 5/94 (5%)

Query  1   MAMTLRDMDAVRPVNREA-VDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSR  59
           M  +L D+ A  P   +A +D     ++ EV    LRELR      Q ++A+  +I+Q  
Sbjct  1   MGRSLNDIIAALPAEEQAAIDARYQDLKQEVEG--LRELRQIAGKAQAEIASALNIKQPS  58

Query  60  VSSIENGDIGSAQVNTLRKYVSALGGELDITVRL  93
           VS IE        ++TLR YV A+GGEL++TV+L
Sbjct  59  VSQIERQT--DMYLSTLRSYVEAVGGELELTVKL  90


>gi|256397406|ref|YP_003118970.1| XRE family transcriptional regulator [Catenulispora acidiphila 
DSM 44928]
 gi|256363632|gb|ACU77129.1| transcriptional regulator, XRE family [Catenulispora acidiphila 
DSM 44928]
Length=107

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 31/84 (37%), Positives = 46/84 (55%), Gaps = 2/84 (2%)

Query  12  RPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA  71
           R    EAV   +AR+  E+  +RL E+R A+ +TQ QVA    + + R+S IE G +   
Sbjct  19  RAGGEEAVAAGRARLLAEMTGYRLAEIRRARGMTQQQVAERMGVTKGRISQIEQGKVSGQ  78

Query  72  QVNTLRKYVSALGGELDITVRLGD  95
           +V  L +Y +ALGG L   +   D
Sbjct  79  EV--LARYATALGGRLHQAIYFED  100


>gi|271968262|ref|YP_003342458.1| XRE family transcriptional regulator [Streptosporangium roseum 
DSM 43021]
 gi|270511437|gb|ACZ89715.1| putative transcriptional regulator, XRE family [Streptosporangium 
roseum DSM 43021]
Length=112

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 38/105 (37%), Positives = 58/105 (56%), Gaps = 12/105 (11%)

Query  2    AMTLRDMDA--VRPVNREAVDRHKARMRDEV----RAFRLRELRAAQSLTQVQVAALAHI  55
            A+T  ++ A  V+P + + V    A++RD +    RA++L E R    L Q  VA    +
Sbjct  5    AVTWEELRAELVQPSDEQEV----AQLRDGLVARQRAYQLAEARRKLGLRQEDVAQAMGV  60

Query  56   RQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL  100
             Q+R+S IE+G I  ++V TL  YV+ALGG+L +    GD    L
Sbjct  61   SQARISQIESGVI--SEVATLAAYVTALGGQLKVVADFGDSVMVL  103


>gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
Length=100

 Score = 50.4 bits (119),  Expect = 8e-05, Method: Compositional matrix adjust.
 Identities = 30/89 (34%), Positives = 52/89 (59%), Gaps = 0/89 (0%)

Query  12  RPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA  71
           R V  E  D+ +   + +V A+ L + R  + LTQ +VAA   + Q RVS +E G + + 
Sbjct  10  RGVTEEMRDQARRITQAKVDAYDLAQARKERDLTQREVAAKMGVSQCRVSELEAGRLATM  69

Query  72  QVNTLRKYVSALGGELDITVRLGDETFTL  100
           +V+TL +Y+++LG +L ++    D+T  L
Sbjct  70  RVDTLSRYIASLGRKLVLSAEWPDKTIPL  98



Lambda     K      H
   0.321    0.131    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128767090968


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40