BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2021c
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609158|ref|NP_216537.1| transcriptional regulatory protein ... 201 2e-50
gi|340627032|ref|YP_004745484.1| putative transcriptional regula... 198 2e-49
gi|229492897|ref|ZP_04386693.1| transcriptional regulator, XRE f... 103 1e-20
gi|255327117|ref|ZP_05368192.1| transcriptional regulator [Rothi... 91.7 3e-17
gi|145294223|ref|YP_001137044.1| hypothetical protein cgR_0179 [... 83.6 1e-14
gi|41410366|ref|NP_963202.1| hypothetical protein MAP4268c [Myco... 78.6 3e-13
gi|311899627|dbj|BAJ32035.1| putative transcriptional regulator ... 73.2 1e-11
gi|290956142|ref|YP_003487324.1| transcriptional regulator [Stre... 72.4 2e-11
gi|213692218|ref|YP_002322804.1| transcriptional regulator, XRE ... 71.6 3e-11
gi|302559948|ref|ZP_07312290.1| xre family toxin-antitoxin syste... 70.5 8e-11
gi|139439319|ref|ZP_01772761.1| Hypothetical protein COLAER_0177... 69.7 1e-10
gi|271968265|ref|YP_003342461.1| XRE family transcriptional regu... 68.9 3e-10
gi|297159044|gb|ADI08756.1| putative transcriptional regulator [... 68.6 3e-10
gi|271963921|ref|YP_003338117.1| XRE family transcriptional regu... 67.8 5e-10
gi|329944098|ref|ZP_08292357.1| DNA-binding helix-turn-helix pro... 67.8 5e-10
gi|257791669|ref|YP_003182275.1| XRE family transcriptional regu... 66.2 1e-09
gi|290960636|ref|YP_003491818.1| DNA-binding protein [Streptomyc... 65.9 2e-09
gi|15610319|ref|NP_217699.1| transcriptional regulatory protein ... 63.9 8e-09
gi|308372449|ref|ZP_07428736.2| transcriptional regulator [Mycob... 63.9 8e-09
gi|288917052|ref|ZP_06411423.1| transcriptional regulator, XRE f... 63.5 1e-08
gi|302560054|ref|ZP_07312396.1| helix-turn-helix domain-containi... 63.2 1e-08
gi|331695181|ref|YP_004331420.1| helix-turn-helix domain-contain... 62.8 2e-08
gi|339445401|ref|YP_004711405.1| hypothetical protein EGYY_18710... 61.2 5e-08
gi|300790532|ref|YP_003770823.1| XRE family transcriptional regu... 59.7 1e-07
gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Str... 59.3 2e-07
gi|271967923|ref|YP_003342119.1| helix-turn-helix domain-contain... 58.5 3e-07
gi|240169974|ref|ZP_04748633.1| putative transcriptional regulat... 58.5 3e-07
gi|288920055|ref|ZP_06414374.1| transcriptional regulator, XRE f... 58.5 4e-07
gi|271969745|ref|YP_003343941.1| XRE family transcriptional regu... 57.8 5e-07
gi|302865475|ref|YP_003834112.1| helix-turn-helix domain-contain... 57.8 6e-07
gi|308179150|ref|YP_003918556.1| hypothetical protein AARI_33980... 57.4 7e-07
gi|291298156|ref|YP_003509434.1| XRE family transcriptional regu... 57.0 9e-07
gi|315501167|ref|YP_004080054.1| helix-turn-helix domain-contain... 57.0 1e-06
gi|312195719|ref|YP_004015780.1| hypothetical protein FraEuI1c_1... 55.8 2e-06
gi|336176261|ref|YP_004581636.1| helix-turn-helix domain-contain... 55.1 4e-06
gi|300721600|ref|YP_003710875.1| Cro-like protein [Xenorhabdus n... 54.7 4e-06
gi|254552276|ref|ZP_05142723.1| transcriptional regulator [Mycob... 54.7 5e-06
gi|121609386|ref|YP_997193.1| helix-turn-helix domain-containing... 53.5 9e-06
gi|288919655|ref|ZP_06413983.1| transcriptional regulator, XRE f... 53.5 1e-05
gi|158317564|ref|YP_001510072.1| XRE family transcriptional regu... 53.5 1e-05
gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin syste... 53.5 1e-05
gi|86741569|ref|YP_481969.1| XRE family transcriptional regulato... 52.8 2e-05
gi|302550878|ref|ZP_07303220.1| predicted protein [Streptomyces ... 52.8 2e-05
gi|297563266|ref|YP_003682240.1| XRE family transcriptional regu... 52.4 2e-05
gi|329295509|ref|ZP_08252845.1| XRE family transcriptional regul... 52.4 2e-05
gi|298717325|ref|YP_003729967.1| HTH-type transcriptional regula... 52.0 3e-05
gi|338821107|gb|EGP55076.1| DNA-binding protein, putative [Agrob... 51.6 4e-05
gi|256397406|ref|YP_003118970.1| XRE family transcriptional regu... 50.8 6e-05
gi|271968262|ref|YP_003342458.1| XRE family transcriptional regu... 50.8 6e-05
gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pa... 50.4 8e-05
>gi|15609158|ref|NP_216537.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15841504|ref|NP_336541.1| DNA-binding protein, putative [Mycobacterium tuberculosis CDC1551]
gi|31793201|ref|NP_855694.1| hypothetical protein Mb2044c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=101
Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/101 (100%), Positives = 101/101 (100%), Gaps = 0/101 (0%)
Query 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV
Sbjct 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA
Sbjct 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
>gi|340627032|ref|YP_004745484.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
gi|340005222|emb|CCC44376.1| putative transcriptional regulatory protein [Mycobacterium canettii
CIPT 140010059]
Length=101
Score = 198 bits (503), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 99/101 (99%), Positives = 100/101 (99%), Gaps = 0/101 (0%)
Query 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVA LAHIRQSRV
Sbjct 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAELAHIRQSRV 60
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
SSIENGDIG+AQVNTLRKYVSALGGELDITVRLGDETFTLA
Sbjct 61 SSIENGDIGTAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
>gi|229492897|ref|ZP_04386693.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
SK121]
gi|229320171|gb|EEN85996.1| transcriptional regulator, XRE family [Rhodococcus erythropolis
SK121]
Length=104
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/101 (52%), Positives = 72/101 (72%), Gaps = 0/101 (0%)
Query 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
MA +L DM RPV+R AVD HK R+ +EVRA+RL+ELR +LTQ +VA + Q+R+
Sbjct 4 MAKSLDDMLNARPVDRSAVDAHKGRLLEEVRAYRLKELRKNAALTQGEVADRLGVGQNRI 63
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
S+IE GD+ Q++TLR+YV A+GG L + V LGD+ F +A
Sbjct 64 SNIERGDLARIQIDTLRRYVEAVGGSLRVEVELGDDRFHIA 104
>gi|255327117|ref|ZP_05368192.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
gi|255295735|gb|EET75077.1| transcriptional regulator [Rothia mucilaginosa ATCC 25296]
Length=102
Score = 91.7 bits (226), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 48/102 (48%), Positives = 65/102 (64%), Gaps = 3/102 (2%)
Query 3 MTLRDMD---AVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSR 59
MT MD A+RP NREAVD M EVRA+RLRELR +TQ +AA ++ Q+
Sbjct 1 MTTSVMDELYALRPYNREAVDALTEEMIAEVRAYRLRELREQAQMTQQNIAAELNVSQNS 60
Query 60 VSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
VS +E GD+ Q++TL++Y+ ALGG+L I GD ++ LA
Sbjct 61 VSKLERGDLDKTQISTLKRYIEALGGKLSIEANFGDTSYRLA 102
>gi|145294223|ref|YP_001137044.1| hypothetical protein cgR_0179 [Corynebacterium glutamicum R]
gi|140844143|dbj|BAF53142.1| hypothetical protein [Corynebacterium glutamicum R]
Length=113
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/98 (47%), Positives = 65/98 (67%), Gaps = 1/98 (1%)
Query 5 LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE 64
L D+ RP NRE +DR KA M + +A+RLR LR LTQ +A + Q+R+S IE
Sbjct 4 LPDLHRRRPGNRENIDRIKAGMYSDAKAYRLRTLREESGLTQESLAKKIGVGQNRISQIE 63
Query 65 NGDIGSAQVNTLRKYVSALGGELDITVRLGD-ETFTLA 101
+G + SA+V+T++KYV+ALGG L++TV+ D T TL
Sbjct 64 HGHLTSARVSTVQKYVAALGGSLELTVKRADGSTVTLP 101
>gi|41410366|ref|NP_963202.1| hypothetical protein MAP4268c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41399200|gb|AAS06818.1| hypothetical protein MAP_4268c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336460763|gb|EGO39650.1| Helix-turn-helix protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=102
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/91 (51%), Positives = 62/91 (69%), Gaps = 0/91 (0%)
Query 5 LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE 64
L DM RP NR +D KA M EV +RLRELR A TQ +AA + Q+RVS +E
Sbjct 4 LDDMRRRRPGNRTRIDAIKAEMDREVAQYRLRELREAAGYTQTTLAAAIGVGQNRVSQME 63
Query 65 NGDIGSAQVNTLRKYVSALGGELDITVRLGD 95
+GD+G+++V+TLRKYV A GGEL+++V+ D
Sbjct 64 HGDLGTSRVDTLRKYVEATGGELEVSVKRPD 94
>gi|311899627|dbj|BAJ32035.1| putative transcriptional regulator [Kitasatospora setae KM-6054]
Length=103
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/95 (43%), Positives = 55/95 (58%), Gaps = 0/95 (0%)
Query 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
MA + +D+ + E V H+ R+ EVRA+RL E+R Q LTQ +VA L + Q V
Sbjct 3 MARSWKDVRTEVVTDEERVAAHRTRLDAEVRAYRLAEIRREQDLTQTEVAELIGVTQPNV 62
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGD 95
S +E GD+ + TLR+YV ALGG L + GD
Sbjct 63 SRLERGDLEGTSLGTLREYVEALGGRLHLVADFGD 97
>gi|290956142|ref|YP_003487324.1| transcriptional regulator [Streptomyces scabiei 87.22]
gi|260645668|emb|CBG68759.1| putative transcriptional regulatory protein [Streptomyces scabiei
87.22]
Length=111
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/97 (39%), Positives = 57/97 (59%), Gaps = 0/97 (0%)
Query 5 LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE 64
L++ P ++ + + A + EVRA+RL E+R Q +TQ VA + + Q RVS+IE
Sbjct 15 LKEEFGFSPEEQKEIAQGTAALLSEVRAYRLAEVRKRQHMTQTAVAKILGVTQGRVSAIE 74
Query 65 NGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
G + ++V+TL YV ALGG+L + GDE+ L
Sbjct 75 KGALSRSEVDTLAAYVEALGGKLKLVADFGDESLVLG 111
>gi|213692218|ref|YP_002322804.1| transcriptional regulator, XRE family [Bifidobacterium longum
subsp. infantis ATCC 15697]
gi|213523679|gb|ACJ52426.1| putative transcriptional regulator, XRE family [Bifidobacterium
longum subsp. infantis ATCC 15697]
gi|320458344|dbj|BAJ68965.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length=102
Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/95 (38%), Positives = 58/95 (62%), Gaps = 0/95 (0%)
Query 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
M+ T A ++RE +D K R+ +EVR + L+E R Q +TQ Q+A + Q RV
Sbjct 1 MSYTPEQFAADSGISREEIDAAKNRLLEEVRLYELKEARKRQDVTQKQLAERMGVSQKRV 60
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGD 95
SS+E+GD+ ++ TLR+Y+ A+GG+L + + D
Sbjct 61 SSLESGDVDKTEIRTLRRYLDAIGGKLQVNAVMPD 95
>gi|302559948|ref|ZP_07312290.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
gi|302477566|gb|EFL40659.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
Length=112
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/77 (50%), Positives = 51/77 (67%), Gaps = 0/77 (0%)
Query 25 RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALG 84
R+ EVRA +L E+R Q+LTQ QVAA + RVS+IE+G++ A+V TLR YV ALG
Sbjct 36 RLTAEVRAHKLAEVRREQALTQRQVAASMGVSAPRVSAIEHGELDRAEVATLRAYVEALG 95
Query 85 GELDITVRLGDETFTLA 101
G L + GD +T+A
Sbjct 96 GRLRVVADFGDAEYTVA 112
>gi|139439319|ref|ZP_01772761.1| Hypothetical protein COLAER_01777 [Collinsella aerofaciens ATCC
25986]
gi|133775343|gb|EBA39163.1| Hypothetical protein COLAER_01777 [Collinsella aerofaciens ATCC
25986]
Length=100
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/99 (36%), Positives = 59/99 (60%), Gaps = 0/99 (0%)
Query 3 MTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSS 62
M L + R + R+++ + R RD + A++L ++R + LTQ VA + Q RVS
Sbjct 1 MELHEYMESRGITRDSITAEQERTRDRIEAYKLAQIRRLKDLTQASVAQSMGVSQKRVSE 60
Query 63 IENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
+E G++GS +++TL +Y +LGG+L ++ D T TLA
Sbjct 61 LERGELGSMRLDTLSRYAESLGGKLVASIEFPDRTVTLA 99
>gi|271968265|ref|YP_003342461.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270511440|gb|ACZ89718.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=109
Score = 68.9 bits (167), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/72 (46%), Positives = 47/72 (66%), Gaps = 0/72 (0%)
Query 30 VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDI 89
V + L+ELR + TQ VAA I QSRVS IENGD+ + ++ TLR Y +ALGG +D+
Sbjct 38 VAGYHLKELRKSLGKTQADVAAALGISQSRVSQIENGDLDAMELETLRAYAAALGGHVDV 97
Query 90 TVRLGDETFTLA 101
T+ +G + +A
Sbjct 98 TISVGPHSVKVA 109
>gi|297159044|gb|ADI08756.1| putative transcriptional regulator [Streptomyces bingchenggensis
BCW-1]
Length=112
Score = 68.6 bits (166), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/91 (46%), Positives = 58/91 (64%), Gaps = 3/91 (3%)
Query 13 PVNREAVDRHKA--RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGS 70
PV R A ++ A R+ EVRA +L E+R Q+LTQ QVAA + RVS+IE+G++
Sbjct 23 PV-RSAEEKQAAMDRLTAEVRAHKLAEVRREQALTQRQVAASMGVSAPRVSAIEHGELDR 81
Query 71 AQVNTLRKYVSALGGELDITVRLGDETFTLA 101
A++ T+R YV ALGG L + GD +T+A
Sbjct 82 AELATIRSYVEALGGRLRVVADFGDAEYTVA 112
>gi|271963921|ref|YP_003338117.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270507096|gb|ACZ85374.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=110
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/95 (42%), Positives = 61/95 (65%), Gaps = 9/95 (9%)
Query 9 DAVRPVNREAVDRHKARMRDE--VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENG 66
DA R V +EA AR R E VR ++L E+R A +TQV++A + Q+R+S IENG
Sbjct 23 DAERAVGQEA-----ARQRREAYVRGYQLAEMRKAAGITQVELAEALGVTQARISKIENG 77
Query 67 DIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
++ + ++ +R YV+ALGG +D+ LG+ T+ +A
Sbjct 78 EV--SGIDVVRAYVTALGGTVDLVATLGNRTWKVA 110
>gi|329944098|ref|ZP_08292357.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
170 str. F0386]
gi|328530828|gb|EGF57684.1| DNA-binding helix-turn-helix protein [Actinomyces sp. oral taxon
170 str. F0386]
Length=155
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/89 (43%), Positives = 55/89 (62%), Gaps = 4/89 (4%)
Query 2 AMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVS 61
MT+ ++ PV+RE VD H+ +M E+RA+RLRE LTQ Q+A + Q RVS
Sbjct 39 PMTITELLEEHPVDREEVDTHEEQMLTEIRAYRLRE---QTGLTQAQLADRIGVGQCRVS 95
Query 62 SIENGDIGS-AQVNTLRKYVSALGGELDI 89
IE GD+ +++ T+R Y+ A+GG L I
Sbjct 96 KIERGDLEEDSKIGTIRLYLEAVGGHLSI 124
>gi|257791669|ref|YP_003182275.1| XRE family transcriptional regulator [Eggerthella lenta DSM 2243]
gi|317487865|ref|ZP_07946457.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
gi|325830628|ref|ZP_08164049.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
gi|257475566|gb|ACV55886.1| transcriptional regulator, XRE family [Eggerthella lenta DSM
2243]
gi|316912991|gb|EFV34508.1| hypothetical protein HMPREF1023_00155 [Eggerthella sp. 1_3_56FAA]
gi|325487374|gb|EGC89816.1| DNA-binding helix-turn-helix protein [Eggerthella sp. HGA1]
Length=123
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/93 (34%), Positives = 58/93 (63%), Gaps = 1/93 (1%)
Query 2 AMTLRDMDAVRP-VNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
++++ + RP + E ++ + + +++ + L++ R A +TQ +VAA + Q R+
Sbjct 4 SLSIEEFLETRPDITPEMLEEGRLLVEAKIKGYELQQARKACGMTQKEVAAKMGVSQKRI 63
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRL 93
S +ENG I QV TLR+Y+++LGG L+IT +L
Sbjct 64 SDLENGSIDVMQVETLRRYITSLGGTLEITAKL 96
>gi|290960636|ref|YP_003491818.1| DNA-binding protein [Streptomyces scabiei 87.22]
gi|260650162|emb|CBG73278.1| putative DNA-binding protein [Streptomyces scabiei 87.22]
Length=112
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/71 (50%), Positives = 44/71 (62%), Gaps = 0/71 (0%)
Query 31 RAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDIT 90
R RL ELR Q TQVQVA + Q+RVS IE G + ++V+TL YV ALGG+L I
Sbjct 42 RVHRLAELRKRQHTTQVQVAEAMGVTQARVSRIEKGQLERSEVDTLAAYVKALGGKLKIV 101
Query 91 VRLGDETFTLA 101
GDE++ L
Sbjct 102 ADFGDESYVLG 112
>gi|15610319|ref|NP_217699.1| transcriptional regulatory protein [Mycobacterium tuberculosis
H37Rv]
gi|15842764|ref|NP_337801.1| hypothetical protein MT3275 [Mycobacterium tuberculosis CDC1551]
gi|31794361|ref|NP_856854.1| transcriptional regulatory protein [Mycobacterium bovis AF2122/97]
61 more sequence titles
Length=109
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/107 (43%), Positives = 60/107 (57%), Gaps = 9/107 (8%)
Query 1 MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA 53
MA RD+ DAV + R AV R + MRD V A RL E+R A Q VAAL
Sbjct 3 MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM 60
Query 54 HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL 100
+ Q+RVS +E+GD+ ++ TL+ YV+ALGG L I G+ T L
Sbjct 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 107
>gi|308372449|ref|ZP_07428736.2| transcriptional regulator [Mycobacterium tuberculosis SUMu004]
gi|308374797|ref|ZP_07437440.2| transcriptional regulator [Mycobacterium tuberculosis SUMu006]
gi|308376015|ref|ZP_07445835.2| transcriptional regulator [Mycobacterium tuberculosis SUMu007]
15 more sequence titles
Length=107
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 46/107 (43%), Positives = 60/107 (57%), Gaps = 9/107 (8%)
Query 1 MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA 53
MA RD+ DAV + R AV R + MRD V A RL E+R A Q VAAL
Sbjct 1 MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM 58
Query 54 HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL 100
+ Q+RVS +E+GD+ ++ TL+ YV+ALGG L I G+ T L
Sbjct 59 GVSQARVSKLESGDLSHTELGTLQAYVAALGGHLRIVAEFGENTVEL 105
>gi|288917052|ref|ZP_06411423.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288351592|gb|EFC85798.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=108
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/90 (43%), Positives = 52/90 (58%), Gaps = 5/90 (5%)
Query 17 EAVDRHKA-----RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA 71
E DRH+ R+ E RA RL E+R LTQ +VA H+RQ RVS+IE +I ++
Sbjct 19 EEHDRHEVEAGAERLVAENRAHRLAEMRRRLGLTQAEVADRMHVRQERVSAIERANIDAS 78
Query 72 QVNTLRKYVSALGGELDITVRLGDETFTLA 101
++ TL YV ALGG+L+I G E +
Sbjct 79 ELRTLAAYVKALGGQLEIIADFGGERLVIG 108
>gi|302560054|ref|ZP_07312396.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus
Tu4000]
gi|302477672|gb|EFL40765.1| helix-turn-helix domain-containing protein [Streptomyces griseoflavus
Tu4000]
Length=101
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/97 (43%), Positives = 50/97 (52%), Gaps = 5/97 (5%)
Query 3 MTLRDMDA----VRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQS 58
M L MD + P RE +D KA M D R L LR AQ TQVQVA + Q
Sbjct 1 MNLGSMDDLTADITPEKRERIDAIKAEMIDAERGHELATLRKAQGFTQVQVAKAMGVTQG 60
Query 59 RVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGD 95
RVS IE G +T+ Y+ A+GGEL IT +G+
Sbjct 61 RVSQIERG-TARLDTSTMAAYLHAIGGELTITATVGN 96
>gi|331695181|ref|YP_004331420.1| helix-turn-helix domain-containing protein [Pseudonocardia dioxanivorans
CB1190]
gi|326949870|gb|AEA23567.1| helix-turn-helix domain protein [Pseudonocardia dioxanivorans
CB1190]
Length=102
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/93 (41%), Positives = 51/93 (55%), Gaps = 2/93 (2%)
Query 9 DAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDI 68
+ V E V++ K R+ +VRA RL E R + LTQ QVA + RVS IENG++
Sbjct 12 EHVAAAGEERVEQGKTRLLGQVRAHRLAETRKRRGLTQRQVAQAMGVTVGRVSQIENGEL 71
Query 69 GSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
A ++ L +YV ALGG L I GDE +
Sbjct 72 --AGIDVLDRYVHALGGHLQIVANFGDEQIKVG 102
>gi|339445401|ref|YP_004711405.1| hypothetical protein EGYY_18710 [Eggerthella sp. YY7918]
gi|338905153|dbj|BAK45004.1| hypothetical protein EGYY_18710 [Eggerthella sp. YY7918]
Length=111
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/72 (39%), Positives = 46/72 (64%), Gaps = 0/72 (0%)
Query 29 EVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELD 88
+++ + L++ R A +TQ ++AA + Q R+S +ENG I QV+TLR+Y++ LGG L+
Sbjct 32 KIKGYELQQARKACHITQKELAAQMGVSQKRISDLENGSIDVMQVDTLRRYIAGLGGTLE 91
Query 89 ITVRLGDETFTL 100
I +L T L
Sbjct 92 INAKLPQGTIQL 103
>gi|300790532|ref|YP_003770823.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|299800046|gb|ADJ50421.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
U32]
gi|340532217|gb|AEK47422.1| XRE family transcriptional regulator [Amycolatopsis mediterranei
S699]
Length=121
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/96 (35%), Positives = 53/96 (56%), Gaps = 7/96 (7%)
Query 6 RDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIEN 65
RD+DA R REA + + V FRL +LR ++Q ++A + Q R+S +E
Sbjct 22 RDVDAARIAAREATEAY-------VLGFRLAQLREDAGVSQTELARSMGVSQPRISQLEQ 74
Query 66 GDIGSAQVNTLRKYVSALGGELDITVRLGDETFTLA 101
GD G ++TLR+Y++ALGG + + D T++
Sbjct 75 GDPGQMALDTLRRYITALGGRMRVVADFDDRDVTVS 110
>gi|320010824|gb|ADW05674.1| helix-turn-helix domain protein [Streptomyces flavogriseus ATCC
33331]
Length=101
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/90 (38%), Positives = 48/90 (54%), Gaps = 1/90 (1%)
Query 11 VRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGS 70
+ P R +D K+ M D R L LR AQ +TQVQVA + Q R+S IE G +
Sbjct 13 ITPEKRARIDAIKSEMVDAERGHELASLRKAQGMTQVQVAKAMGVTQGRISQIERGGV-R 71
Query 71 AQVNTLRKYVSALGGELDITVRLGDETFTL 100
+T+ Y+ A+GGEL I +G+ + L
Sbjct 72 LDTSTMSAYLHAIGGELTILATVGNVSVKL 101
>gi|271967923|ref|YP_003342119.1| helix-turn-helix domain-containing protein [Streptosporangium
roseum DSM 43021]
gi|270511098|gb|ACZ89376.1| helix-turn-helix domain protein [Streptosporangium roseum DSM
43021]
Length=102
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/84 (43%), Positives = 50/84 (60%), Gaps = 3/84 (3%)
Query 18 AVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLR 77
A+DR A + V A RL +R L QV VA H+RQ RVS+IE G+ SA ++TL
Sbjct 22 AIDRGAA---ETVAAVRLAAMRKQLGLRQVDVAERMHVRQERVSAIERGEPTSATLSTLI 78
Query 78 KYVSALGGELDITVRLGDETFTLA 101
YV ALGG+L++ + D + +A
Sbjct 79 AYVRALGGQLEVVATVDDTRYKIA 102
>gi|240169974|ref|ZP_04748633.1| putative transcriptional regulatory protein [Mycobacterium kansasii
ATCC 12478]
Length=109
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/82 (41%), Positives = 48/82 (59%), Gaps = 1/82 (1%)
Query 20 DRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALAHIRQSRVSSIENGDIGSAQVNTLRK 78
D + M D V+A RL ++R A Q VAAL + Q+RVS +E+GD+ ++ TL+
Sbjct 26 DAARKEMHDAVQAQRLADIRKAHGHARQADVAALMGVSQARVSKLESGDLSHTELGTLQS 85
Query 79 YVSALGGELDITVRLGDETFTL 100
YV+ALGG L I G+ + L
Sbjct 86 YVAALGGNLRIVADFGESSVEL 107
>gi|288920055|ref|ZP_06414374.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288348538|gb|EFC82796.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=109
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/90 (38%), Positives = 53/90 (59%), Gaps = 5/90 (5%)
Query 15 NREAVDRH---KARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA 71
N E V+R +A+M V +L E+R +TQ Q+A + Q+R+S IENG G+
Sbjct 22 NAERVERRAEMRAQMLASVSGAQLAEIRRQLGVTQTQLAEATGLTQARISQIENG--GAM 79
Query 72 QVNTLRKYVSALGGELDITVRLGDETFTLA 101
++TLR Y++ LGG LD+ R+G+ +A
Sbjct 80 GLDTLRAYITGLGGHLDVVARIGNIQLNIA 109
>gi|271969745|ref|YP_003343941.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270512920|gb|ACZ91198.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=106
Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/87 (41%), Positives = 52/87 (60%), Gaps = 5/87 (5%)
Query 18 AVDRHKA---RMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVN 74
V+R +A +R+E +A+RL E+R + LTQ QVA + RVS IE GD+ + +V
Sbjct 22 GVERFEAETLHLREEAQAWRLAEMRKRRGLTQNQVAENMGVSVGRVSQIEKGDVSTREV- 80
Query 75 TLRKYVSALGGELDITVRLGDETFTLA 101
L +YV+ALGG L + GDE ++
Sbjct 81 -LDRYVAALGGTLKLIADFGDEQLKVS 106
>gi|302865475|ref|YP_003834112.1| helix-turn-helix domain-containing protein [Micromonospora aurantiaca
ATCC 27029]
gi|315502022|ref|YP_004080909.1| helix-turn-helix domain-containing protein [Micromonospora sp.
L5]
gi|302568334|gb|ADL44536.1| helix-turn-helix domain protein [Micromonospora aurantiaca ATCC
27029]
gi|315408641|gb|ADU06758.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=103
Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/80 (44%), Positives = 44/80 (55%), Gaps = 0/80 (0%)
Query 17 EAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTL 76
EA + +AR V AF L E R LTQ QVA + + RVS IENGD+ +V TL
Sbjct 19 EAYEAERARTDAWVSAFHLAEERKRLGLTQRQVAEIMGVTPGRVSQIENGDLDVNEVATL 78
Query 77 RKYVSALGGELDITVRLGDE 96
+Y +ALG L I GD+
Sbjct 79 SRYANALGARLRIIFDYGDD 98
>gi|308179150|ref|YP_003918556.1| hypothetical protein AARI_33980 [Arthrobacter arilaitensis Re117]
gi|307746613|emb|CBT77585.1| helix-turn-helix domain-containing protein [Arthrobacter arilaitensis
Re117]
Length=101
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/89 (35%), Positives = 49/89 (56%), Gaps = 0/89 (0%)
Query 1 MAMTLRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
M D + + REAV H+ ++ E R LR LR L+QVQVA++ + R+
Sbjct 1 MGFAYADPEVLTQQQREAVAEHRRHVQHESRRLSLRALREEAELSQVQVASVMKLSVDRI 60
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDI 89
+ +E GD+ Q++TLR+Y +LG L +
Sbjct 61 ARMETGDLDRVQLSTLRRYAESLGARLQV 89
>gi|291298156|ref|YP_003509434.1| XRE family transcriptional regulator [Stackebrandtia nassauensis
DSM 44728]
gi|290567376|gb|ADD40341.1| transcriptional regulator, XRE family [Stackebrandtia nassauensis
DSM 44728]
Length=101
Score = 57.0 bits (136), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 38/96 (40%), Positives = 47/96 (49%), Gaps = 5/96 (5%)
Query 3 MTLRDMD----AVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQS 58
M LRDM + R +D K M D R L LR AQ LTQ QVA + Q
Sbjct 1 MELRDMSELTSGISTEQRARIDAIKQEMIDAERGHELASLRKAQGLTQSQVAEAMGVTQG 60
Query 59 RVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLG 94
R+S IE+G T+ Y+ A+GGEL IT +G
Sbjct 61 RISQIESGKT-RLDTETMAAYLHAIGGELTITATVG 95
>gi|315501167|ref|YP_004080054.1| helix-turn-helix domain-containing protein [Micromonospora sp.
L5]
gi|315407786|gb|ADU05903.1| helix-turn-helix domain protein [Micromonospora sp. L5]
Length=106
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/84 (39%), Positives = 48/84 (58%), Gaps = 2/84 (2%)
Query 18 AVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLR 77
A + M D+ R +RL ELR + +TQ QVA+ + +RVS IE G++ + +V L
Sbjct 25 AFEAEVGEMLDQARGWRLAELRKRREMTQEQVASRMGVSVARVSQIEAGNVATQEV--LA 82
Query 78 KYVSALGGELDITVRLGDETFTLA 101
+Y+ ALGG L + GDE +A
Sbjct 83 RYIGALGGTLKLIADFGDEQLKVA 106
>gi|312195719|ref|YP_004015780.1| hypothetical protein FraEuI1c_1854 [Frankia sp. EuI1c]
gi|311227055|gb|ADP79910.1| helix-turn-helix domain protein [Frankia sp. EuI1c]
Length=104
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/85 (42%), Positives = 45/85 (53%), Gaps = 0/85 (0%)
Query 17 EAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTL 76
EA+ +AR + AF L E R LTQ QVA + RVS IENGD+ + +V TL
Sbjct 20 EALAAERARTEAWISAFHLAEERTRLGLTQRQVAESMGVSPGRVSQIENGDLDANEVATL 79
Query 77 RKYVSALGGELDITVRLGDETFTLA 101
+Y ALG L I G+E +A
Sbjct 80 SRYARALGARLRIIFDYGNELHQIA 104
>gi|336176261|ref|YP_004581636.1| helix-turn-helix domain-containing protein [Frankia symbiont
of Datisca glomerata]
gi|334857241|gb|AEH07715.1| helix-turn-helix domain protein [Frankia symbiont of Datisca
glomerata]
Length=104
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/96 (39%), Positives = 49/96 (52%), Gaps = 4/96 (4%)
Query 5 LRDMDAVRPV----NREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
D D +R + EA+ +AR V AF L E R LTQ QVA L + RV
Sbjct 4 FHDWDDIRAELHDGDGEALAAERARTEAWVSAFHLAEERRRLGLTQRQVAELMGVSPGRV 63
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDE 96
S IENGD+ + +V TL +Y ALG + I G++
Sbjct 64 SQIENGDLDANEVATLSRYARALGARMRIIFDYGND 99
>gi|300721600|ref|YP_003710875.1| Cro-like protein [Xenorhabdus nematophila ATCC 19061]
gi|297628092|emb|CBJ88643.1| Cro-like protein [Xenorhabdus nematophila ATCC 19061]
Length=99
Score = 54.7 bits (130), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/94 (37%), Positives = 59/94 (63%), Gaps = 7/94 (7%)
Query 4 TLRDMDAVR-PVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSS 62
TL+++ A R P ++ ++ A M E + +++RE A +L+Q QVA I QS V++
Sbjct 3 TLKELMAKRSPESQAKIEEKAAEMLLETQLYQIRE---ALALSQTQVAKNLGIAQSSVAA 59
Query 63 IEN-GDIGSAQVNTLRKYVSALGGELDITVRLGD 95
IE G+ +++TL+KY+ A+GGE+ + V+L D
Sbjct 60 IEQRGN--ELKISTLKKYIEAMGGEMTLGVKLPD 91
>gi|254552276|ref|ZP_05142723.1| transcriptional regulator [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
Length=98
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/93 (45%), Positives = 54/93 (59%), Gaps = 9/93 (9%)
Query 1 MAMTLRDM--DAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLT-QVQVAALA 53
MA RD+ DAV + R AV R + MRD V A RL E+R A Q VAAL
Sbjct 3 MARNWRDIRADAVAQGRVDLQRAAVAREE--MRDAVLAHRLAEIRKALGHARQADVAALM 60
Query 54 HIRQSRVSSIENGDIGSAQVNTLRKYVSALGGE 86
+ Q+RVS +E+GD+ ++ TL+ YV+ALGG
Sbjct 61 GVSQARVSKLESGDLSHTELGTLQAYVAALGGH 93
>gi|121609386|ref|YP_997193.1| helix-turn-helix domain-containing protein [Verminephrobacter
eiseniae EF01-2]
gi|121554026|gb|ABM58175.1| helix-turn-helix domain protein [Verminephrobacter eiseniae EF01-2]
Length=103
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/62 (47%), Positives = 40/62 (65%), Gaps = 2/62 (3%)
Query 34 RLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRL 93
+L+ELR A+ +TQV+VA + Q+ VS +E+ D V+TLRKYV ALGGEL +
Sbjct 32 QLQELRKARKVTQVEVAKAMSVEQAAVSKLEHRD--DMYVSTLRKYVKALGGELKLVASF 89
Query 94 GD 95
D
Sbjct 90 PD 91
>gi|288919655|ref|ZP_06413983.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
gi|288348944|gb|EFC83193.1| transcriptional regulator, XRE family [Frankia sp. EUN1f]
Length=104
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/96 (37%), Positives = 47/96 (49%), Gaps = 4/96 (4%)
Query 5 LRDMDAVRPVNR----EAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
D D +R EA+ + R + AF L E R LTQ +VA L + RV
Sbjct 4 FHDWDDIRAEQHDGDDEALAAERGRTEAWISAFHLAEERKRLGLTQREVAELMGVSPGRV 63
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDE 96
S IENGD+ + +V TL +Y ALG L I G++
Sbjct 64 SQIENGDLDANEVATLSRYARALGARLRIIFDYGND 99
>gi|158317564|ref|YP_001510072.1| XRE family transcriptional regulator [Frankia sp. EAN1pec]
gi|158112969|gb|ABW15166.1| transcriptional regulator, XRE family [Frankia sp. EAN1pec]
Length=104
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/96 (37%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query 5 LRDMDAVRP----VNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRV 60
D D +R + EA+ + R + AF L E R LTQ +VA L + RV
Sbjct 4 FHDWDDIRADLHDGDDEALAAERGRTEAWISAFHLAEERKRLGLTQREVAELMGVSPGRV 63
Query 61 SSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDE 96
S IENGD+ + +V TL +Y ALG L I G++
Sbjct 64 SQIENGDLDANEVATLSRYARALGARLRIIFDYGND 99
>gi|302559460|ref|ZP_07311802.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
gi|302477078|gb|EFL40171.1| xre family toxin-antitoxin system, antitoxin component [Streptomyces
griseoflavus Tu4000]
Length=110
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/68 (45%), Positives = 40/68 (59%), Gaps = 2/68 (2%)
Query 30 VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDI 89
V LRE+R Q LTQ QVAA I Q+RVS IE G+I + + T+R Y ALG + +
Sbjct 41 VVGHHLREIREEQGLTQGQVAASVGISQARVSQIERGEIHN--LETMRAYAEALGARITV 98
Query 90 TVRLGDET 97
T+ G +
Sbjct 99 TIEYGGPS 106
>gi|86741569|ref|YP_481969.1| XRE family transcriptional regulator [Frankia sp. CcI3]
gi|86568431|gb|ABD12240.1| transcriptional regulator, XRE family [Frankia sp. CcI3]
Length=109
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 48/80 (60%), Gaps = 4/80 (5%)
Query 23 KARMRDE--VRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYV 80
+AR R++ + RL E R LTQ +VA + +SRVS IE GD+ + V+ + +YV
Sbjct 24 EARRRNQAYIDGHRLAERRRLLGLTQTEVAEHMGVSKSRVSQIERGDVST--VDVIARYV 81
Query 81 SALGGELDITVRLGDETFTL 100
ALGG++ IT GD+ + L
Sbjct 82 QALGGQIQITAVFGDDLYIL 101
>gi|302550878|ref|ZP_07303220.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
gi|302468496|gb|EFL31589.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
Length=117
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/69 (41%), Positives = 40/69 (58%), Gaps = 0/69 (0%)
Query 32 AFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITV 91
L ELR + LTQ +VA + Q RVS +ENGDI QV ++ Y++ALGG L +
Sbjct 40 GHHLAELRRQRGLTQAEVAEKMGVSQVRVSHMENGDIDRMQVESIAAYIAALGGHLRLVA 99
Query 92 RLGDETFTL 100
+G+ + T
Sbjct 100 DIGEVSTTF 108
>gi|297563266|ref|YP_003682240.1| XRE family transcriptional regulator [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
gi|296847714|gb|ADH69734.1| transcriptional regulator, XRE family [Nocardiopsis dassonvillei
subsp. dassonvillei DSM 43111]
Length=135
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/81 (40%), Positives = 47/81 (59%), Gaps = 2/81 (2%)
Query 20 DRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSAQVNTLRKY 79
D AR+ E + + L LR TQ +VA + + Q+R+S IE+G I S ++ LR Y
Sbjct 30 DAETARIEAERQGYALSSLRKESGRTQKEVAQIMGVSQARISQIEHGRIDSLEL--LRSY 87
Query 80 VSALGGELDITVRLGDETFTL 100
+SA+GGEL + V G + TL
Sbjct 88 ISAIGGELHLRVDQGPLSVTL 108
>gi|329295509|ref|ZP_08252845.1| XRE family transcriptional regulator [Plautia stali symbiont]
Length=99
Score = 52.4 bits (124), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/94 (40%), Positives = 58/94 (62%), Gaps = 7/94 (7%)
Query 5 LRDMDAVRPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIE 64
L D+ A R +A R+KA +++ RLR+LR +L+QVQ+A + Q +++IE
Sbjct 4 LEDLIAQRSPESQARIRNKAA--EKILEIRLRQLREELALSQVQLAEKMGVSQPAIAAIE 61
Query 65 -NGDIGSAQVNTLRKYVSALGGELDITVRL--GD 95
GD ++++L+KYV ALGG+L +TV L GD
Sbjct 62 ARGD--ELKLSSLKKYVEALGGKLSVTVELPAGD 93
>gi|298717325|ref|YP_003729967.1| HTH-type transcriptional regulator PuuR [Pantoea vagans C9-1]
gi|298361514|gb|ADI78295.1| HTH-type transcriptional regulator puuR [Pantoea vagans C9-1]
Length=99
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/93 (37%), Positives = 55/93 (60%), Gaps = 5/93 (5%)
Query 4 TLRDMDAVRPV-NREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSS 62
TL++M A R +R ++ A +R E+ RLRE S++Q +A + ++Q V+
Sbjct 3 TLKEMMAKRSSQSRTRIESRAAEIRQEITLARLRE---ELSVSQTHLAEVLGVKQPSVAK 59
Query 63 IENGDIGSAQVNTLRKYVSALGGELDITVRLGD 95
IEN D +++TLR+Y++ LGGEL + V L D
Sbjct 60 IENVD-NDPKLSTLRRYIAGLGGELTLDVTLPD 91
>gi|338821107|gb|EGP55076.1| DNA-binding protein, putative [Agrobacterium tumefaciens F2]
Length=127
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/94 (38%), Positives = 52/94 (56%), Gaps = 5/94 (5%)
Query 1 MAMTLRDMDAVRPVNREA-VDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSR 59
M +L D+ A P +A +D ++ EV LRELR Q ++A+ +I+Q
Sbjct 1 MGRSLNDIIAALPAEEQAAIDARYQDLKQEVEG--LRELRQIAGKAQAEIASALNIKQPS 58
Query 60 VSSIENGDIGSAQVNTLRKYVSALGGELDITVRL 93
VS IE ++TLR YV A+GGEL++TV+L
Sbjct 59 VSQIERQT--DMYLSTLRSYVEAVGGELELTVKL 90
>gi|256397406|ref|YP_003118970.1| XRE family transcriptional regulator [Catenulispora acidiphila
DSM 44928]
gi|256363632|gb|ACU77129.1| transcriptional regulator, XRE family [Catenulispora acidiphila
DSM 44928]
Length=107
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/84 (37%), Positives = 46/84 (55%), Gaps = 2/84 (2%)
Query 12 RPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA 71
R EAV +AR+ E+ +RL E+R A+ +TQ QVA + + R+S IE G +
Sbjct 19 RAGGEEAVAAGRARLLAEMTGYRLAEIRRARGMTQQQVAERMGVTKGRISQIEQGKVSGQ 78
Query 72 QVNTLRKYVSALGGELDITVRLGD 95
+V L +Y +ALGG L + D
Sbjct 79 EV--LARYATALGGRLHQAIYFED 100
>gi|271968262|ref|YP_003342458.1| XRE family transcriptional regulator [Streptosporangium roseum
DSM 43021]
gi|270511437|gb|ACZ89715.1| putative transcriptional regulator, XRE family [Streptosporangium
roseum DSM 43021]
Length=112
Score = 50.8 bits (120), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/105 (37%), Positives = 58/105 (56%), Gaps = 12/105 (11%)
Query 2 AMTLRDMDA--VRPVNREAVDRHKARMRDEV----RAFRLRELRAAQSLTQVQVAALAHI 55
A+T ++ A V+P + + V A++RD + RA++L E R L Q VA +
Sbjct 5 AVTWEELRAELVQPSDEQEV----AQLRDGLVARQRAYQLAEARRKLGLRQEDVAQAMGV 60
Query 56 RQSRVSSIENGDIGSAQVNTLRKYVSALGGELDITVRLGDETFTL 100
Q+R+S IE+G I ++V TL YV+ALGG+L + GD L
Sbjct 61 SQARISQIESGVI--SEVATLAAYVTALGGQLKVVADFGDSVMVL 103
>gi|295105862|emb|CBL03405.1| Helix-turn-helix. [Gordonibacter pamelaeae 7-10-1-b]
Length=100
Score = 50.4 bits (119), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/89 (34%), Positives = 52/89 (59%), Gaps = 0/89 (0%)
Query 12 RPVNREAVDRHKARMRDEVRAFRLRELRAAQSLTQVQVAALAHIRQSRVSSIENGDIGSA 71
R V E D+ + + +V A+ L + R + LTQ +VAA + Q RVS +E G + +
Sbjct 10 RGVTEEMRDQARRITQAKVDAYDLAQARKERDLTQREVAAKMGVSQCRVSELEAGRLATM 69
Query 72 QVNTLRKYVSALGGELDITVRLGDETFTL 100
+V+TL +Y+++LG +L ++ D+T L
Sbjct 70 RVDTLSRYIASLGRKLVLSAEWPDKTIPL 98
Lambda K H
0.321 0.131 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128767090968
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40