BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2023c

Length=119
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841506|ref|NP_336543.1|  hypothetical protein MT2079 [Mycoba...   230    6e-59
gi|15609160|ref|NP_216539.1|  hypothetical protein Rv2023c [Mycob...   228    2e-58
gi|167970448|ref|ZP_02552725.1|  hypothetical protein MtubH3_2141...   196    9e-49
gi|91201361|emb|CAJ74421.1|  predicted orf [Candidatus Kuenenia s...  45.4    0.003
gi|91199948|emb|CAJ72990.1|  hypothetical protein kuste2245 [Cand...  43.1    0.014
gi|153820608|ref|ZP_01973275.1|  cadherin domain protein [Vibrio ...  34.3    6.8  
gi|154300115|ref|XP_001550474.1|  hypothetical protein BC1G_10433...  33.9    7.3  
gi|156044546|ref|XP_001588829.1|  hypothetical protein SS1G_10377...  33.9    7.6  


>gi|15841506|ref|NP_336543.1| hypothetical protein MT2079 [Mycobacterium tuberculosis CDC1551]
 gi|13881748|gb|AAK46357.1| hypothetical protein MT2079 [Mycobacterium tuberculosis CDC1551]
Length=151

 Score =  230 bits (586),  Expect = 6e-59, Method: Compositional matrix adjust.
 Identities = 119/119 (100%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    VAARHARAGRWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVE  60
            VAARHARAGRWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVE
Sbjct  33   VAARHARAGRWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVE  92

Query  61   RVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS  119
            RVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS
Sbjct  93   RVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS  151


>gi|15609160|ref|NP_216539.1| hypothetical protein Rv2023c [Mycobacterium tuberculosis H37Rv]
 gi|31793203|ref|NP_855696.1| hypothetical protein Mb2046c [Mycobacterium bovis AF2122/97]
 gi|121637907|ref|YP_978130.1| hypothetical protein BCG_2040c [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 45 more sequence titles
 Length=119

 Score =  228 bits (581),  Expect = 2e-58, Method: Compositional matrix adjust.
 Identities = 118/119 (99%), Positives = 119/119 (100%), Gaps = 0/119 (0%)

Query  1    VAARHARAGRWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVE  60
            +AARHARAGRWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVE
Sbjct  1    MAARHARAGRWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVE  60

Query  61   RVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS  119
            RVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS
Sbjct  61   RVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS  119


>gi|167970448|ref|ZP_02552725.1| hypothetical protein MtubH3_21418 [Mycobacterium tuberculosis 
H37Ra]
 gi|254232194|ref|ZP_04925521.1| hypothetical protein TBCG_01976 [Mycobacterium tuberculosis C]
 gi|254551046|ref|ZP_05141493.1| hypothetical protein Mtube_11376 [Mycobacterium tuberculosis 
'98-R604 INH-RIF-EM']
 26 more sequence titles
 Length=102

 Score =  196 bits (498),  Expect = 9e-49, Method: Compositional matrix adjust.
 Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%)

Query  18   MLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVERVDAHSRFSSSNLPKSS  77
            MLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVERVDAHSRFSSSNLPKSS
Sbjct  1    MLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGLVERVDAHSRFSSSNLPKSS  60

Query  78   RRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS  119
            RRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS
Sbjct  61   RRISGRVSLSGMSNSAAKVVASTSSSPWGQPLSVGLRRRWRS  102


>gi|91201361|emb|CAJ74421.1| predicted orf [Candidatus Kuenenia stuttgartiensis]
Length=139

 Score = 45.4 bits (106),  Expect = 0.003, Method: Compositional matrix adjust.
 Identities = 25/84 (30%), Positives = 40/84 (48%), Gaps = 3/84 (3%)

Query  10   RWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRLGL-VERVDAHSRF  68
            +W  Q  PM  +  + YE+ AN  A   GGI  +H++  R GLV  +   +E +  H  +
Sbjct  52   QWGDQKHPMFTAKNIHYEIAANSQAIACGGIGVIHQMAIRSGLVKEIDENLELLKRHIPY  111

Query  69   SSSN--LPKSSRRISGRVSLSGMS  90
              S+  L  +   +SG V L  + 
Sbjct  112  HESDHILNIAYNVLSGNVRLEDIE  135


>gi|91199948|emb|CAJ72990.1| hypothetical protein kuste2245 [Candidatus Kuenenia stuttgartiensis]
Length=507

 Score = 43.1 bits (100),  Expect = 0.014, Method: Composition-based stats.
 Identities = 17/47 (37%), Positives = 25/47 (54%), Gaps = 0/47 (0%)

Query  10  RWAAQPRPMLGSGAVRYEVGANIDATGFGGIAAVHRLVTRLGLVTRL  56
           +W  Q  PM  +  + YE+ AN  A   GGI  +H++  R GLV  +
Sbjct  28  QWGDQKHPMFTAKNIHYEIAANSQAIACGGIGVIHQMAIRSGLVKEI  74


>gi|153820608|ref|ZP_01973275.1| cadherin domain protein [Vibrio cholerae NCTC 8457]
 gi|126508848|gb|EAZ71442.1| cadherin domain protein [Vibrio cholerae NCTC 8457]
Length=287

 Score = 34.3 bits (77),  Expect = 6.8, Method: Compositional matrix adjust.
 Identities = 27/80 (34%), Positives = 32/80 (40%), Gaps = 4/80 (5%)

Query  29   GANIDATGFGGIAAVHRLVTRLGLVTRLGLVERVDAHSRFSSSNL----PKSSRRISGRV  84
            GA   A  F  +A VH LV        LG V+  D   + +  NL    PK      G  
Sbjct  202  GAEAAANDFEALANVHSLVVTATEDAGLGGVKTTDITVKLNEQNLDDNAPKFEGTTDGEY  261

Query  85   SLSGMSNSAAKVVASTSSSP  104
            S S   NSAA  V  T  +P
Sbjct  262  SFSYDENSAADTVLGTVKAP  281


>gi|154300115|ref|XP_001550474.1| hypothetical protein BC1G_10433 [Botryotinia fuckeliana B05.10]
 gi|150856722|gb|EDN31914.1| hypothetical protein BC1G_10433 [Botryotinia fuckeliana B05.10]
Length=717

 Score = 33.9 bits (76),  Expect = 7.3, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 31/72 (44%), Gaps = 0/72 (0%)

Query  34   ATGFGGIAAVHRLVTRLGLVTRLGLVERVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSA  93
            A+     A +HR    + L    G+V     H     S+L K +RR SGR S + MS  +
Sbjct  446  ASSTNHYAEIHRQQAEMALNGSSGIVSPPSGHKESFFSHLRKRARRFSGRQSTTPMSPKS  505

Query  94   AKVVASTSSSPW  105
              + A     PW
Sbjct  506  MDLEAQAGCGPW  517


>gi|156044546|ref|XP_001588829.1| hypothetical protein SS1G_10377 [Sclerotinia sclerotiorum 1980]
 gi|154694765|gb|EDN94503.1| hypothetical protein SS1G_10377 [Sclerotinia sclerotiorum 1980 
UF-70]
Length=795

 Score = 33.9 bits (76),  Expect = 7.6, Method: Compositional matrix adjust.
 Identities = 22/72 (31%), Positives = 31/72 (44%), Gaps = 0/72 (0%)

Query  34   ATGFGGIAAVHRLVTRLGLVTRLGLVERVDAHSRFSSSNLPKSSRRISGRVSLSGMSNSA  93
            A+     A +HR    + L    GLV     H     S+L K +RR SGR S + MS  +
Sbjct  513  ASSTNHYAEIHRQQAEMALSGNSGLVSPPSGHKESFFSHLRKRARRFSGRQSQTPMSPKS  572

Query  94   AKVVASTSSSPW  105
              + +     PW
Sbjct  573  MDLESQAGCGPW  584



Lambda     K      H
   0.318    0.129    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 129033565320


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40