BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2024c
Length=515
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609161|ref|NP_216540.1| hypothetical protein Rv2024c [Mycob... 1064 0.0
gi|306972372|ref|ZP_07485033.1| putative DEAD/DEAH box helicase ... 1059 0.0
gi|289750611|ref|ZP_06509989.1| helicase [Mycobacterium tubercul... 1042 0.0
gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tubercul... 1041 0.0
gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosi... 1041 0.0
gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tubercul... 1040 0.0
gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tubercul... 1038 0.0
gi|339632064|ref|YP_004723706.1| hypothetical protein MAF_20390 ... 1038 0.0
gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [My... 1038 0.0
gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tubercul... 1038 0.0
gi|298525527|ref|ZP_07012936.1| helicase domain-containing prote... 1036 0.0
gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycob... 1036 0.0
gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tubercul... 1034 0.0
gi|262202558|ref|YP_003273766.1| type III restriction protein re... 817 0.0
gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocar... 813 0.0
gi|296394144|ref|YP_003659028.1| type III restriction protein re... 709 0.0
gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium ... 611 1e-172
gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Co... 611 1e-172
gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase ... 602 6e-170
gi|334564090|ref|ZP_08517081.1| putative helicase [Corynebacteri... 592 6e-167
gi|297625507|ref|YP_003687270.1| helicase [Propionibacterium fre... 584 2e-164
gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase ... 583 2e-164
gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00... 580 2e-163
gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfami... 575 9e-162
gi|302205704|gb|ADL10046.1| UvrABC system protein B [Corynebacte... 564 1e-158
gi|227487648|ref|ZP_03917964.1| superfamily II DNA/RNA helicase ... 560 3e-157
gi|336325465|ref|YP_004605431.1| helicase/methyltransferase [Cor... 555 7e-156
gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_0055... 550 3e-154
gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase ... 548 7e-154
gi|345446919|gb|AEN91936.1| Adenine specific DNA methyltransfera... 538 1e-150
gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter au... 492 8e-137
gi|309812063|ref|ZP_07705823.1| helicase C-terminal domain prote... 489 6e-136
gi|116662287|ref|YP_829341.1| type III restriction enzyme, res s... 482 6e-134
gi|325066260|ref|ZP_08124933.1| putative helicase [Actinomyces o... 482 7e-134
gi|282897281|ref|ZP_06305283.1| hypothetical protein CRD_02205 [... 477 2e-132
gi|138896441|ref|YP_001126894.1| hypothetical protein GTNG_2804 ... 475 9e-132
gi|206603764|gb|EDZ40244.1| Putative helicase [Leptospirillum sp... 474 2e-131
gi|124516073|gb|EAY57582.1| putative helicase [Leptospirillum ru... 473 3e-131
gi|251772067|gb|EES52637.1| putative helicase [Leptospirillum fe... 459 5e-127
gi|124262646|ref|YP_001023116.1| adenine specific DNA methyltran... 457 2e-126
gi|334845256|gb|EGM23822.1| helicase domain-containing protein [... 456 5e-126
gi|298370200|ref|ZP_06981516.1| helicase domain protein [Neisser... 452 7e-125
gi|260575999|ref|ZP_05843993.1| type III restriction protein res... 451 2e-124
gi|317152124|ref|YP_004120172.1| type III restriction protein re... 449 6e-124
gi|334196917|gb|AEG70102.1| helicase domain protein [Ralstonia s... 446 6e-123
gi|108763664|ref|YP_630054.1| putative restriction/modification ... 445 1e-122
gi|120609278|ref|YP_968956.1| type III restriction enzyme, res s... 444 3e-122
gi|315655210|ref|ZP_07908111.1| helicase [Mobiluncus curtisii AT... 442 7e-122
gi|28867279|ref|NP_789898.1| helicase domain-containing protein ... 441 1e-121
gi|46580580|ref|YP_011388.1| adenine specific DNA methyltransfer... 441 2e-121
>gi|15609161|ref|NP_216540.1| hypothetical protein Rv2024c [Mycobacterium tuberculosis H37Rv]
gi|148661838|ref|YP_001283361.1| hypothetical protein MRA_2039 [Mycobacterium tuberculosis H37Ra]
gi|167970447|ref|ZP_02552724.1| hypothetical protein MtubH3_21413 [Mycobacterium tuberculosis
H37Ra]
gi|307084656|ref|ZP_07493769.1| helicase [Mycobacterium tuberculosis SUMu012]
gi|2896761|emb|CAA17238.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|148505990|gb|ABQ73799.1| hypothetical protein MRA_2039 [Mycobacterium tuberculosis H37Ra]
gi|308365764|gb|EFP54615.1| helicase [Mycobacterium tuberculosis SUMu012]
Length=515
Score = 1064 bits (2751), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 515/515 (100%), Positives = 515/515 (100%), Gaps = 0/515 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA 515
KQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA 515
>gi|306972372|ref|ZP_07485033.1| putative DEAD/DEAH box helicase [Mycobacterium tuberculosis SUMu010]
gi|307080081|ref|ZP_07489251.1| putative DEAD/DEAH box helicase [Mycobacterium tuberculosis SUMu011]
gi|308358163|gb|EFP47014.1| putative DEAD/DEAH box helicase [Mycobacterium tuberculosis SUMu010]
gi|308362095|gb|EFP50946.1| putative DEAD/DEAH box helicase [Mycobacterium tuberculosis SUMu011]
Length=515
Score = 1059 bits (2739), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 514/515 (99%), Positives = 514/515 (99%), Gaps = 0/515 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA 515
KQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA 515
>gi|289750611|ref|ZP_06509989.1| helicase [Mycobacterium tuberculosis T92]
gi|289691198|gb|EFD58627.1| helicase [Mycobacterium tuberculosis T92]
Length=1161
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 503/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRT T
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTGT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|289754132|ref|ZP_06513510.1| helicase [Mycobacterium tuberculosis EAS054]
gi|289694719|gb|EFD62148.1| helicase [Mycobacterium tuberculosis EAS054]
Length=1606
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/506 (99%), Positives = 504/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|15841510|ref|NP_336547.1| helicase [Mycobacterium tuberculosis CDC1551]
gi|253798919|ref|YP_003031920.1| helicase [Mycobacterium tuberculosis KZN 1435]
gi|254364844|ref|ZP_04980890.1| conserved hypothetical protein [Mycobacterium tuberculosis str.
Haarlem]
35 more sequence titles
Length=1606
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/506 (99%), Positives = 504/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|289447644|ref|ZP_06437388.1| helicase [Mycobacterium tuberculosis CPHL_A]
gi|289420602|gb|EFD17803.1| helicase [Mycobacterium tuberculosis CPHL_A]
Length=1606
Score = 1040 bits (2689), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 504/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNG+AKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGVAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|289443521|ref|ZP_06433265.1| helicase [Mycobacterium tuberculosis T46]
gi|289570133|ref|ZP_06450360.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289416440|gb|EFD13680.1| helicase [Mycobacterium tuberculosis T46]
gi|289543887|gb|EFD47535.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=1606
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 503/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRT T
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTGT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|339632064|ref|YP_004723706.1| hypothetical protein MAF_20390 [Mycobacterium africanum GM041182]
gi|339331420|emb|CCC27109.1| unnamed protein product [Mycobacterium africanum GM041182]
Length=1606
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 503/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRR AQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRCAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|121637910|ref|YP_978133.1| hypothetical protein BCG_2043c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990404|ref|YP_002645091.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
172]
gi|121493557|emb|CAL72031.1| Conserved hypothetical protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224773517|dbj|BAH26323.1| hypothetical protein JTY_2038 [Mycobacterium bovis BCG str. Tokyo
172]
gi|341601947|emb|CCC64621.1| conserved hypothetical protein [Mycobacterium bovis BCG str.
Moreau RDJ]
Length=1606
Score = 1038 bits (2685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 503/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRR AQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRCAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|289574703|ref|ZP_06454930.1| helicase [Mycobacterium tuberculosis K85]
gi|289539134|gb|EFD43712.1| helicase [Mycobacterium tuberculosis K85]
Length=1606
Score = 1038 bits (2684), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 503/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRR AQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRCAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|298525527|ref|ZP_07012936.1| helicase domain-containing protein [Mycobacterium tuberculosis
94_M4241A]
gi|298495321|gb|EFI30615.1| helicase domain-containing protein [Mycobacterium tuberculosis
94_M4241A]
Length=860
Score = 1036 bits (2679), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 503/506 (99%), Positives = 503/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNG AKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGRAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|31793206|ref|NP_855699.1| hypothetical protein Mb2049c [Mycobacterium bovis AF2122/97]
gi|31618798|emb|CAD96902.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
Length=1606
Score = 1036 bits (2678), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/506 (99%), Positives = 502/506 (99%), Gaps = 0/506 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDT
Sbjct 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVF
Sbjct 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA
Sbjct 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRR AQGLTVVFCTY
Sbjct 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRCAQGLTVVFCTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESN VRVHDGQYLKAARRLYMTA
Sbjct 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNVVRVHDGQYLKAARRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG
Sbjct 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS
Sbjct 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTS 480
Query 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
KQVAELFPKVVEAYRELVDDGPGLAC
Sbjct 481 KQVAELFPKVVEAYRELVDDGPGLAC 506
>gi|308375757|ref|ZP_07444991.2| helicase [Mycobacterium tuberculosis SUMu007]
gi|308345340|gb|EFP34191.1| helicase [Mycobacterium tuberculosis SUMu007]
gi|339294950|gb|AEJ47061.1| helicase [Mycobacterium tuberculosis CCDC5079]
Length=1603
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 500/503 (99%), Positives = 501/503 (99%), Gaps = 0/503 (0%)
Query 4 VHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGID 63
+HDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVW WIDWPERRGRTDTGID
Sbjct 1 MHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWRWIDWPERRGRTDTGID 60
Query 64 LVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAED 123
LVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAED
Sbjct 61 LVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAED 120
Query 124 ALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVFRGF 183
ALADQLVPVQRIGMAEIAESPIDWDIAWPA DLQVNLTPAKRHELRPHQQQAIDAVFRGF
Sbjct 121 ALADQLVPVQRIGMAEIAESPIDWDIAWPAGDLQVNLTPAKRHELRPHQQQAIDAVFRGF 180
Query 184 AVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSE 243
AVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSE
Sbjct 181 AVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSE 240
Query 244 LDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTYQSL 303
LDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTYQSL
Sbjct 241 LDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTYQSL 300
Query 304 PTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPR 363
PTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPR
Sbjct 301 PTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPR 360
Query 364 IFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIA 423
IFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIA
Sbjct 361 IFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIA 420
Query 424 PRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTSKQV 483
PRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTSKQV
Sbjct 421 PRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIKTSKQV 480
Query 484 AELFPKVVEAYRELVDDGPGLAC 506
AELFPKVVEAYRELVDDGPGLAC
Sbjct 481 AELFPKVVEAYRELVDDGPGLAC 503
>gi|262202558|ref|YP_003273766.1| type III restriction protein res subunit [Gordonia bronchialis
DSM 43247]
gi|262085905|gb|ACY21873.1| type III restriction protein res subunit [Gordonia bronchialis
DSM 43247]
Length=1632
Score = 817 bits (2111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/505 (78%), Positives = 440/505 (88%), Gaps = 5/505 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M SVHDVIEAFRK P+N+ERGTKFEQLMVRYFELDPTMAQQYD VW WIDWP R+G+ DT
Sbjct 3 MASVHDVIEAFRKEPTNSERGTKFEQLMVRYFELDPTMAQQYDGVWRWIDWPGRQGKPDT 62
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GID+VARERDTG+YTAIQCKFYEPTHTLAKGDID+FFTASGK GFTNRVIISTTDRWGRN
Sbjct 63 GIDIVARERDTGDYTAIQCKFYEPTHTLAKGDIDTFFTASGKAGFTNRVIISTTDRWGRN 122
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDA+ DQ +PVQRIG+AEIAESPIDWDIAWP +LQV LTPA RH+ RPHQQQAIDAVF
Sbjct 123 AEDAITDQQIPVQRIGLAEIAESPIDWDIAWPQGELQVELTPAVRHQPRPHQQQAIDAVF 182
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
GFA GNDRGKLIMACGTGKTFTALKIAER AA+NGGSARIL VPSISLLSQTLREWTA
Sbjct 183 DGFAAGNDRGKLIMACGTGKTFTALKIAERTAAENGGSARILFAVPSISLLSQTLREWTA 242
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Q+E D+RAFAVCSDTKVSR+AED V DV IPVTTD L M HR+RA+GLTVVF TY
Sbjct 243 QTETDIRAFAVCSDTKVSRAAEDVSVVDVAIPVTTDGPTLAAHMEHRKRARGLTVVFTTY 302
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLP VA AQ GVD FDLV+CDEAHRTTGVT++G DESNFV+VHD +L A RRLYMTA
Sbjct 303 QSLPAVADAQNRGVDPFDLVICDEAHRTTGVTVSGADESNFVKVHDDDFLHAHRRLYMTA 362
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRIF ++++++A++HSAEL SMDD +GPEFHRLSFG+AV+RGLLTDYKV+VLTVD+G
Sbjct 363 TPRIFADTVREKAEEHSAELTSMDDMDIYGPEFHRLSFGDAVDRGLLTDYKVIVLTVDEG 422
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-----GTGIVAGEPPMRRAVAFAK 475
++A +Q++L+G EL LDDAS+IVGCWNGLAKR+ GTG EPPMRRAVAFAK
Sbjct 423 LVAAPMQKQLAGEFAELQLDDASRIVGCWNGLAKRAGTTPDGTGFAPDEPPMRRAVAFAK 482
Query 476 DIKTSKQVAELFPKVVEAYRELVDD 500
DI SKQVAE+FP VV+AYR+L+DD
Sbjct 483 DIAASKQVAEVFPAVVDAYRDLLDD 507
>gi|54027831|ref|YP_122071.1| hypothetical protein pnf2220 [Nocardia farcinica IFM 10152]
gi|54019339|dbj|BAD60707.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=1653
Score = 813 bits (2100), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/518 (78%), Positives = 437/518 (85%), Gaps = 10/518 (1%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGSVH+VIEAFR APSN+ERGTKFEQLMVRYFELDP +AQQYD VW W DWP+R G+ DT
Sbjct 1 MGSVHEVIEAFRLAPSNSERGTKFEQLMVRYFELDPMLAQQYDKVWRWTDWPDRAGKPDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVARERDTG TAIQCKFYEPTH LAKGDIDSFFTASGK FTNRVIISTTDRWGRN
Sbjct 61 GIDLVARERDTGALTAIQCKFYEPTHVLAKGDIDSFFTASGKKPFTNRVIISTTDRWGRN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDAL DQ +PVQRIG+AEIAESPIDWDIAWPA +LQV+L+ AKRHE RPHQ QAIDAVF
Sbjct 121 AEDALQDQTIPVQRIGLAEIAESPIDWDIAWPAGELQVSLSEAKRHEPRPHQAQAIDAVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
GFA G+DRGKLIMACGTGKTFTALKIAER A +NGG+ARIL VPSISLLSQTLREWTA
Sbjct 181 NGFAAGHDRGKLIMACGTGKTFTALKIAERTAVENGGNARILFAVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Q++LD+RAFAVCSD KVSRSAED VHDV IPVTT + VL EM RR A GLTVVF TY
Sbjct 241 QTQLDLRAFAVCSDNKVSRSAEDVSVHDVAIPVTTSSAVLAAEMERRRHAAGLTVVFTTY 300
Query 301 QSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMT 359
QSLP VA AQ GV+ FDLV+CDEAHRTTGVTL GDDESNFVRVHDG YLKA RRLYMT
Sbjct 301 QSLPAVAGAQAEHGVEPFDLVICDEAHRTTGVTLVGDDESNFVRVHDGDYLKAQRRLYMT 360
Query 360 ATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQ 419
ATPRIF E++KD+A +HSAEL SMDDE +GPEFHRLSFG AVERGLLTDYKV+VLTVD+
Sbjct 361 ATPRIFDETVKDKAAEHSAELSSMDDETRYGPEFHRLSFGAAVERGLLTDYKVIVLTVDE 420
Query 420 GVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-----GTGIVAGEPPMRRAVAFA 474
++A LQQ+L+G EL LDDASKIVGCWNGLAKR+ G G G+PPMRRAV FA
Sbjct 421 DLVAAPLQQQLAGRFSELRLDDASKIVGCWNGLAKRAGKTPEGVGFPPGQPPMRRAVVFA 480
Query 475 KDIKTSKQVAELFPKVVEAYRELV----DDGPGLACLN 508
KDI SKQVAE+FP VV+AYREL+ DDG + N
Sbjct 481 KDIAASKQVAEVFPAVVDAYRELLADREDDGHEITATN 518
>gi|296394144|ref|YP_003659028.1| type III restriction protein res subunit [Segniliparus rotundus
DSM 44985]
gi|296181291|gb|ADG98197.1| type III restriction protein res subunit [Segniliparus rotundus
DSM 44985]
Length=1636
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/515 (66%), Positives = 406/515 (79%), Gaps = 5/515 (0%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
MGS+H+VIEAFR+APSN+ERGTKFE+LMVRYF LDP ++Q+YDAVW WIDWP+R + D
Sbjct 1 MGSIHEVIEAFRQAPSNSERGTKFEKLMVRYFALDPMLSQEYDAVWRWIDWPDRASKADM 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRN 120
GIDLVAR RDTG T +QCKFYEP HTL K DIDSFFT GK F +IISTTD+WG+N
Sbjct 61 GIDLVARSRDTGELTGVQCKFYEPEHTLRKEDIDSFFTELGKEPFVKGIIISTTDKWGKN 120
Query 121 AEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVF 180
AEDAL Q PV R+ +AE+ SPIDW + W +D +V + A RH RPHQ+ A++ VF
Sbjct 121 AEDALVGQSKPVGRLSLAELDGSPIDWRVEWAGEDFEVAIREAARHNARPHQECAVEKVF 180
Query 181 RGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTA 240
GF +GN+RGKL+MACGTGKTFT+L+IAER AA+N G RIL VPSISLLSQTLREWTA
Sbjct 181 EGFGLGNERGKLVMACGTGKTFTSLRIAERAAAENSGYVRILFCVPSISLLSQTLREWTA 240
Query 241 QSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTY 300
Q+ +RAFAVCSD+KVSR+AED HDV IPVTT L +A + GLTVVF TY
Sbjct 241 QTATPLRAFAVCSDSKVSRAAEDSKAHDVAIPVTTKPDQLAAAIAAHGESPGLTVVFTTY 300
Query 301 QSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTA 360
QSLP VA AQ+LGV EFDLV+CDEAHRTTGVTL G+DESNFVR+HDG YL+A RRLYMTA
Sbjct 301 QSLPVVADAQKLGVPEFDLVLCDEAHRTTGVTLFGEDESNFVRIHDGDYLRAKRRLYMTA 360
Query 361 TPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQG 420
TPRI+ E K +AD+HSAE+ SMDDE FGPEF+ L FGEAV++GLLTDYKV+VLTVDQ
Sbjct 361 TPRIYDEKAKGKADEHSAEIASMDDETIFGPEFYHLPFGEAVDKGLLTDYKVLVLTVDQS 420
Query 421 VIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-----GTGIVAGEPPMRRAVAFAK 475
++A +Q +L+G + EL LDDA++IVGCWNGLAKR+ GTG GE PMRRAVAFA+
Sbjct 421 LVAGPMQTQLAGQNHELNLDDATRIVGCWNGLAKRAGAAVDGTGFAPGEVPMRRAVAFAR 480
Query 476 DIKTSKQVAELFPKVVEAYRELVDDGPGLACLNSS 510
DI +SK VAE+FP+VV+AYR+ +DD G + N++
Sbjct 481 DIDSSKMVAEMFPRVVDAYRDTLDDEHGESDENAA 515
>gi|19554259|ref|NP_602261.1| putative helicase [Corynebacterium glutamicum ATCC 13032]
gi|21325842|dbj|BAC00463.1| Restriction enzymes type I helicase subunits and related helicases
[Corynebacterium glutamicum ATCC 13032]
Length=1643
Score = 611 bits (1575), Expect = 1e-172, Method: Compositional matrix adjust.
Identities = 295/508 (59%), Positives = 370/508 (73%), Gaps = 15/508 (2%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M ++ D + A R PS + +G FE+LMV + + DPT++ ++D V W+DWP G DT
Sbjct 1 MSTITDAVSALRTLPSQSAQGLAFEKLMVNFIKSDPTLSTEFDEVHRWVDWPYNGGTMDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIS 112
GIDLVA +D YTAIQCKFY PT +LAKG +DSFF ASG+T F+NR++IS
Sbjct 61 GIDLVAYNKDDDAYTAIQCKFYLPTTSLAKGQLDSFFEASGRTFETPEGTRSFSNRLVIS 120
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTD+W NAE L +Q +P RIG++ IAESPIDWDIA+P +L +NL + + RPHQ
Sbjct 121 TTDKWSSNAEKMLENQTIPTNRIGLSAIAESPIDWDIAYPGSELTINLQLKEPYSPRPHQ 180
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
Q AI+ GF +DRGKLIMACGTGKTFTAL+++E +A NG ARIL LVPSISLLS
Sbjct 181 QTAIEKAIEGFQT-HDRGKLIMACGTGKTFTALRLSEEVARLNGNKARILFLVPSISLLS 239
Query 233 QTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQG 292
QTL+EWTAQ +D+R AVCSD+KVS++AED +D+ +PV+TD ++ ++ HR+RA G
Sbjct 240 QTLKEWTAQKTMDLRPVAVCSDSKVSKAAEDIAAYDLEVPVSTDGALIAEKLEHRKRAAG 299
Query 293 LTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
LTVVF TYQSLP V AQ G + FDLV+CDEAHRTTG+TLAG+D SNF R+HD Y+KA
Sbjct 300 LTVVFSTYQSLPAVHAAQEAGAEPFDLVICDEAHRTTGITLAGEDPSNFTRIHDASYIKA 359
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
A+RLYMTATPR+F +S+K +A HSAE+ SMDDE +GPEFHRL FGEAVE+GLLTDYKV
Sbjct 360 AKRLYMTATPRLFDDSVKGKAADHSAEVSSMDDEAIYGPEFHRLGFGEAVEKGLLTDYKV 419
Query 413 MVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG------TGIVAGEPP 466
+V+TVD+ V A L S EL LD S I+G WNGLAKRSG TG + +
Sbjct 420 VVMTVDEQVAASALTVLGSTPGEELTLDMTSAIIGAWNGLAKRSGKEQDTKTGFSSSDAA 479
Query 467 MRRAVAFAKDIKTSKQVAELFPKVVEAY 494
M RAVAFA+DIKTS+Q+AE FP+VV AY
Sbjct 480 MERAVAFARDIKTSQQIAESFPRVVNAY 507
>gi|62391915|ref|YP_227317.1| superfamily II DNA/RNA helicase [Corynebacterium glutamicum ATCC
13032]
gi|41223062|emb|CAF19007.1| DNA or RNA helicase of superfamily II [Corynebacterium glutamicum
ATCC 13032]
Length=1646
Score = 611 bits (1575), Expect = 1e-172, Method: Compositional matrix adjust.
Identities = 295/508 (59%), Positives = 370/508 (73%), Gaps = 15/508 (2%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M ++ D + A R PS + +G FE+LMV + + DPT++ ++D V W+DWP G DT
Sbjct 4 MSTITDAVSALRTLPSQSAQGLAFEKLMVNFIKSDPTLSTEFDEVHRWVDWPYNGGTMDT 63
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIS 112
GIDLVA +D YTAIQCKFY PT +LAKG +DSFF ASG+T F+NR++IS
Sbjct 64 GIDLVAYNKDDDAYTAIQCKFYLPTTSLAKGQLDSFFEASGRTFETPEGTRSFSNRLVIS 123
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTD+W NAE L +Q +P RIG++ IAESPIDWDIA+P +L +NL + + RPHQ
Sbjct 124 TTDKWSSNAEKMLENQTIPTNRIGLSAIAESPIDWDIAYPGSELTINLQLKEPYSPRPHQ 183
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
Q AI+ GF +DRGKLIMACGTGKTFTAL+++E +A NG ARIL LVPSISLLS
Sbjct 184 QTAIEKAIEGFQT-HDRGKLIMACGTGKTFTALRLSEEVARLNGNKARILFLVPSISLLS 242
Query 233 QTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQG 292
QTL+EWTAQ +D+R AVCSD+KVS++AED +D+ +PV+TD ++ ++ HR+RA G
Sbjct 243 QTLKEWTAQKTMDLRPVAVCSDSKVSKAAEDIAAYDLEVPVSTDGALIAEKLEHRKRAAG 302
Query 293 LTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
LTVVF TYQSLP V AQ G + FDLV+CDEAHRTTG+TLAG+D SNF R+HD Y+KA
Sbjct 303 LTVVFSTYQSLPAVHAAQEAGAEPFDLVICDEAHRTTGITLAGEDPSNFTRIHDASYIKA 362
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
A+RLYMTATPR+F +S+K +A HSAE+ SMDDE +GPEFHRL FGEAVE+GLLTDYKV
Sbjct 363 AKRLYMTATPRLFDDSVKGKAADHSAEVSSMDDEAIYGPEFHRLGFGEAVEKGLLTDYKV 422
Query 413 MVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG------TGIVAGEPP 466
+V+TVD+ V A L S EL LD S I+G WNGLAKRSG TG + +
Sbjct 423 VVMTVDEQVAASALTVLGSTPGEELTLDMTSAIIGAWNGLAKRSGKEQDTKTGFSSSDAA 482
Query 467 MRRAVAFAKDIKTSKQVAELFPKVVEAY 494
M RAVAFA+DIKTS+Q+AE FP+VV AY
Sbjct 483 MERAVAFARDIKTSQQIAESFPRVVNAY 510
>gi|227502121|ref|ZP_03932170.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC
49725]
gi|227077180|gb|EEI15143.1| superfamily II DNA/RNA helicase [Corynebacterium accolens ATCC
49725]
Length=1668
Score = 602 bits (1551), Expect = 6e-170, Method: Compositional matrix adjust.
Identities = 295/524 (57%), Positives = 380/524 (73%), Gaps = 23/524 (4%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M +V+E R+ A+ G FE+LMV YF+ DPT+ Q+D V W DW G+ DT
Sbjct 1 MSKFSEVLEQLRENQPKAKYGIAFEKLMVNYFQTDPTLKAQFDEVSRWTDWRYNGGKADT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASG--------KTGFTNRVIIS 112
GIDLVAR RD G +TAIQCKFY T ++ K +DSFF ASG + F++R+IIS
Sbjct 61 GIDLVARRRDDGTWTAIQCKFYASTASIQKSHLDSFFEASGHSFETEHGREHFSSRIIIS 120
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPAD-----DLQVNLTPAKRHE 167
TTDRW +AE+ALA+Q++P RIG++ IAESPI+WD+A+P ++Q+NL+ + E
Sbjct 121 TTDRWSSHAEEALANQIIPTSRIGISSIAESPINWDVAFPGSEVQDKNIQINLSQRETFE 180
Query 168 LRPHQQQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPS 227
RPHQQ AID GF +DRGKLIMACGTGKTFTAL++AER+A +NGG ARIL LVPS
Sbjct 181 PRPHQQAAIDKAIEGFDT-HDRGKLIMACGTGKTFTALRLAERVAENNGGKARILFLVPS 239
Query 228 ISLLSQTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHR 287
ISLLSQTL+EWTAQ LD+R FAVCSD+KVS+ AED V+D+ +PV+TD + A
Sbjct 240 ISLLSQTLKEWTAQGRLDMRTFAVCSDSKVSKKAEDIAVYDLEVPVSTDGADIAKRFASG 299
Query 288 RRAQGLTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDG 347
+RA+GL +VF TYQSLP V AQ+ G+D+FDLV+CDEAHRTTG+TLAG+D SNFVRVHD
Sbjct 300 KRAKGLNIVFSTYQSLPAVHDAQQQGLDDFDLVICDEAHRTTGITLAGEDSSNFVRVHDT 359
Query 348 QYLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLL 407
Y+KAA+RLYMTATPR+F +++K +A +HSAEL SMDDE +GPEF+RL FGEAV++GLL
Sbjct 360 DYIKAAKRLYMTATPRLFDDAVKGKAAEHSAELTSMDDEGIYGPEFYRLGFGEAVDKGLL 419
Query 408 TDYKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGT------GIV 461
TDYKV+V+TVD+ V A + + ++ L AS ++G WNGLAKRSG G
Sbjct 420 TDYKVLVMTVDESVAANAMAH---SENNQINLTLASAMIGAWNGLAKRSGELQGKKGGFD 476
Query 462 AGEPPMRRAVAFAKDIKTSKQVAELFPKVVEAYRELVDDGPGLA 505
PM+RAVAFAKDIKTS+Q+AE FP ++ ++EL+ D L+
Sbjct 477 ENARPMQRAVAFAKDIKTSEQIAESFPSLIRTHQELLKDKAALS 520
>gi|334564090|ref|ZP_08517081.1| putative helicase [Corynebacterium bovis DSM 20582]
Length=1599
Score = 592 bits (1526), Expect = 6e-167, Method: Compositional matrix adjust.
Identities = 299/509 (59%), Positives = 369/509 (73%), Gaps = 18/509 (3%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M +V DV A R +P +RG FE+LMVRYF L PT+ Q+YD V W DW GR DT
Sbjct 1 MSTVDDVYAALRDSP---DRGIAFEKLMVRYFGLHPTLRQEYDQVCRWTDWEYNGGRPDT 57
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGK--------TGFTNRVIIS 112
G+DLVA R+ ++TA+QCKFYE T TL+KGD+DSFFTASG+ FTNR+IIS
Sbjct 58 GVDLVAHRREDDSWTAVQCKFYESTTTLSKGDLDSFFTASGQGFDTPDGHRYFTNRIIIS 117
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADD--LQVNLTPAKRHELRP 170
TTDRWGRNAE A+ DQ VPVQR G+AEIAE+PIDWDIA+P + V++ +R LRP
Sbjct 118 TTDRWGRNAEAAIEDQAVPVQRFGLAEIAEAPIDWDIAYPGSGAPVVVDMRERQRFALRP 177
Query 171 HQQQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISL 230
HQ++A+D V GF +DRG+LIMACGTGKTFTAL++AE A +NGG AR+L VPS+SL
Sbjct 178 HQREAVDKVLAGFRT-HDRGQLIMACGTGKTFTALRLAEEWAENNGGRARVLFCVPSLSL 236
Query 231 LSQTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRA 290
L+Q++REWT +ELD+R FAVCSDTKV+R+AED +D+ IPVTTD L + RRRA
Sbjct 237 LAQSMREWTTHAELDLRCFAVCSDTKVTRAAEDIATYDLEIPVTTDGATLAERLRTRRRA 296
Query 291 QGLTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYL 350
GL+VVF TYQSL V AQ LG D+FDLV+CDEAHRTTGVTLAG+D FVRVHD +Y+
Sbjct 297 AGLSVVFATYQSLQAVHGAQELGADDFDLVLCDEAHRTTGVTLAGEDPGQFVRVHDPEYI 356
Query 351 KAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDY 410
+A RLYMTATPR++ + +K A +HSAEL SMDDE FGPEFHRL FG AVE GLLTDY
Sbjct 357 RARHRLYMTATPRLYDDEVKGAAAEHSAELASMDDEAVFGPEFHRLGFGTAVESGLLTDY 416
Query 411 KVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRA 470
+V+VLTVDQ + A Q + E+ LDD ++++GCWNGLA G A PM+RA
Sbjct 417 RVLVLTVDQELAAAATQDLVEDDGTEIRLDDVARLIGCWNGLAG----GFDAAARPMQRA 472
Query 471 VAFAKDIKTSKQVAELFPKVVEAYRELVD 499
VAFA DI+ S++VAE FP++ VD
Sbjct 473 VAFAVDIRASRRVAETFPRITAGKEPEVD 501
>gi|297625507|ref|YP_003687270.1| helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
gi|296921272|emb|CBL55824.1| helicase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1]
Length=1593
Score = 584 bits (1505), Expect = 2e-164, Method: Compositional matrix adjust.
Identities = 294/509 (58%), Positives = 364/509 (72%), Gaps = 9/509 (1%)
Query 3 SVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGI 62
++HDVIE FR+APSN ERG KFE+LMV YF DP ++ +YD V W +W D+GI
Sbjct 6 TIHDVIERFREAPSNGERGAKFERLMVEYFYTDPLLSVEYDEVCTWPEWTHNEHTHDSGI 65
Query 63 DLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTG----FTNRVIISTTDRWG 118
DLVAR R+ G +TAIQCKFY+P H L KGDIDSFFTASGK+ F NR+IISTTDRW
Sbjct 66 DLVARNREDGTWTAIQCKFYDPKHYLQKGDIDSFFTASGKSWDGMRFDNRIIISTTDRWS 125
Query 119 RNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDA 178
+AE ALA+Q +PVQRI +A+IAESP+DW + L A R+ LRPHQ++AI
Sbjct 126 GHAETALANQSIPVQRISLADIAESPVDW-MQQSKGSLDFEPQKATRYGLRPHQKEAIAK 184
Query 179 VFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREW 238
+ GF DRG+ I ACGTGKTFT+LK+AE +NGG ++L L PSISL+SQTLREW
Sbjct 185 IQEGFQT-RDRGQWISACGTGKTFTSLKLAEERCKNNGGQLKVLFLAPSISLVSQTLREW 243
Query 239 TAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFC 298
AQ++ D+R F VCSDTK S+ AED VHD+P+P T A++ A RR + +TVVF
Sbjct 244 MAQTQTDIRPFVVCSDTKASKQAEDISVHDIPLPTTDAAKLASLMAAGGRRGKQMTVVFS 303
Query 299 TYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDD-ESNFVRVHDGQYLKAARRLY 357
TYQS+ VAKAQR +FDL++CDEAHRTTGVTL GD+ ES FV+VH+ YL A +RLY
Sbjct 304 TYQSIDVVAKAQRESGQQFDLILCDEAHRTTGVTLTGDEGESAFVKVHNNTYLPATKRLY 363
Query 358 MTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTV 417
MTATPRI+ E +K +AD+HSA L SMDDE TFGPEFHRL FG+AVE+GLLTDYKVM+L V
Sbjct 364 MTATPRIYGEDVKKKADEHSALLTSMDDEATFGPEFHRLGFGQAVEKGLLTDYKVMILCV 423
Query 418 DQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEP-PMRRAVAFAKD 476
IA +Q ++ GE+ LDDASKI+GCWNGLAKR+ P PM+RAVAFA++
Sbjct 424 QNDAIADSMQGAIANSDGEISLDDASKIIGCWNGLAKRTTDLDFGKNPAPMQRAVAFAQN 483
Query 477 IKTSKQVAELFPKVVEAYRELVD-DGPGL 504
IK SK A+ FP++ A + D D P L
Sbjct 484 IKASKGFAQAFPELTSALADDADEDTPQL 512
>gi|227549090|ref|ZP_03979139.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum
DSM 44291]
gi|227078819|gb|EEI16782.1| superfamily II DNA/RNA helicase [Corynebacterium lipophiloflavum
DSM 44291]
Length=1655
Score = 583 bits (1504), Expect = 2e-164, Method: Compositional matrix adjust.
Identities = 283/519 (55%), Positives = 372/519 (72%), Gaps = 19/519 (3%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M S V++ R+ + G+ FE+LMV +F DP +A +Y+ V W+DW G DT
Sbjct 1 MSSFAQVMDQLRENQPAGKYGSAFEKLMVNFFRSDPVLANEYEDVCRWVDWRYNGGNADT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIS 112
GIDLVAR R+ G +TAIQCKFY+ + L K +DSFF ASG + F NR++IS
Sbjct 61 GIDLVARRREDGRWTAIQCKFYKESTYLQKSHLDSFFEASGHSFSAENGPESFANRIVIS 120
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTD+W NAE AL +Q++P RIG+A+IA+SPIDWD+A+P ++QVNL+ + RPHQ
Sbjct 121 TTDKWSANAEKALENQVIPTSRIGLADIAQSPIDWDVAFPGSEIQVNLSRKETFSPRPHQ 180
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
Q AID GF DRGKLIMACGTGKTFTAL++AE+IA NGG AR+L LVPSISLLS
Sbjct 181 QTAIDKAIEGFETA-DRGKLIMACGTGKTFTALRLAEQIADRNGGKARVLFLVPSISLLS 239
Query 233 QTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQG 292
QTL+EWTAQ+ +D+R+ AVCSDTKVS+ AED +D+ +PV+T+ + M+ +R+ G
Sbjct 240 QTLKEWTAQACVDLRSIAVCSDTKVSKKAEDIASYDLEVPVSTNGAEIASRMSSGKRSSG 299
Query 293 LTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
L V+F TYQSLP + AQ G+DEFD+V+CDEAHRTTGVTLAG++ SNF +VHD Y++A
Sbjct 300 LHVIFSTYQSLPAIHNAQTNGLDEFDIVICDEAHRTTGVTLAGEEASNFTKVHDADYIRA 359
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
A+RLYMTATPR+F +++K +A +HSAE+ SMDDE FGPEFHRL FGEAVE GLLTDYKV
Sbjct 360 AKRLYMTATPRLFDDAVKGKAAEHSAEVASMDDEAIFGPEFHRLGFGEAVEAGLLTDYKV 419
Query 413 MVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG------TGIVAGEPP 466
+V+TVD+ + A L + E+ L AS ++G WNGLAKRSG +G G P
Sbjct 420 LVMTVDEDIAADTLARG----DQEINLSLASAMIGAWNGLAKRSGKEQGTKSGFEHGADP 475
Query 467 MRRAVAFAKDIKTSKQVAELFPKVVEAYRELVDDGPGLA 505
MRR+VAFAKDIKTSKQ+AE +P ++ Y++ + + ++
Sbjct 476 MRRSVAFAKDIKTSKQIAESYPALIANYQQSLREASAMS 514
>gi|225020367|ref|ZP_03709559.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii
ATCC 33806]
gi|224946756|gb|EEG27965.1| hypothetical protein CORMATOL_00374 [Corynebacterium matruchotii
ATCC 33806]
Length=1650
Score = 580 bits (1496), Expect = 2e-163, Method: Compositional matrix adjust.
Identities = 277/517 (54%), Positives = 363/517 (71%), Gaps = 20/517 (3%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M S+ D ++ R PS A++G FE+LMV YF+ DP + +YD V+ W+DWP G +D
Sbjct 1 MASLTDALDELRSLPSKAKQGLAFEKLMVNYFKTDPVLRSEYDEVYRWVDWPLNGGTSDQ 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT-------------GFTN 107
GIDLVAR R+ G + A+QCKFY + TL K +DSFF ASG+T F +
Sbjct 61 GIDLVARRREDGRWAAVQCKFYAESTTLQKQHLDSFFEASGRTFVNSDGNRGGGGAQFAH 120
Query 108 RVIISTTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHE 167
R+IISTTD+W NAE L +QL+P RIG++ IAESPIDWDI +P ++ NLT + +E
Sbjct 121 RLIISTTDKWSSNAESMLENQLIPTSRIGLSTIAESPIDWDIVYPGSEISFNLTLRETYE 180
Query 168 LRPHQQQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPS 227
RPHQ AID GF + +DRGKLIMACGTGKTFTAL++AE+ A GG ARIL LVPS
Sbjct 181 PRPHQVTAIDKTLAGFQI-HDRGKLIMACGTGKTFTALRLAEQFAEKKGGKARILFLVPS 239
Query 228 ISLLSQTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHR 287
ISLLSQTL+EWTAQ+ +D+R++AVCSD KV++ AED +D+ +PV+T+ + ++H
Sbjct 240 ISLLSQTLKEWTAQARIDMRSYAVCSDNKVAKKAEDIATYDLEVPVSTNGEDIYKRLSHS 299
Query 288 RRAQGLTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDG 347
+RA+GLTVVF TYQSL + AQ+ G + FDL++CDEAHRTTG TL GD+ S F R+HD
Sbjct 300 KRAKGLTVVFSTYQSLAAIHDAQQHGFEPFDLIICDEAHRTTGATLLGDEPSVFSRIHDA 359
Query 348 QYLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLL 407
Y+ +RLYMTATPR+F +++K +A +HSAEL SMDDE +GPEFHRL FG+AVE GLL
Sbjct 360 NYIAGTKRLYMTATPRLFDDNVKGKAAEHSAELYSMDDEAIYGPEFHRLGFGDAVEMGLL 419
Query 408 TDYKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG------TGIV 461
TDYKV+V+TVD+ V A + + G EL L AS ++G WNG+AKRSG +G
Sbjct 420 TDYKVLVMTVDESVAADAMARFTGGSGQELTLSLASAMIGAWNGVAKRSGKEQGTSSGFA 479
Query 462 AGEPPMRRAVAFAKDIKTSKQVAELFPKVVEAYRELV 498
PMRR VAFAKDIKTSK++ E +P ++ Y+ L+
Sbjct 480 VDAEPMRRTVAFAKDIKTSKEITETYPALIRNYQSLL 516
>gi|296118729|ref|ZP_06837305.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
DSM 20306]
gi|295968218|gb|EFG81467.1| DNA or RNA helicase of superfamily II [Corynebacterium ammoniagenes
DSM 20306]
Length=1656
Score = 575 bits (1481), Expect = 9e-162, Method: Compositional matrix adjust.
Identities = 286/512 (56%), Positives = 365/512 (72%), Gaps = 21/512 (4%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M + +V+E R+ + G FE+LMV +F PT+A Q+D V+ W DW G++DT
Sbjct 1 MTAFGEVLEQLRENQPQGKYGIAFEKLMVNFFRTAPTLASQFDEVYRWSDWRYNGGKSDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASG--------KTGFTNRVIIS 112
GIDLVA D ++ AIQ KFY+ T ++ K IDSFF ASG K F++R IIS
Sbjct 61 GIDLVAHRIDDDSWVAIQAKFYKETTSIQKSHIDSFFEASGHSFETEKGKEHFSHRYIIS 120
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTD+W +NAEDAL +Q++ RIGM++IA +P++WD+A+P ++Q+NL+ + R HQ
Sbjct 121 TTDKWSKNAEDALENQVIETSRIGMSDIATAPVNWDVAFPGSEIQINLSRKEAFAPRKHQ 180
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
+AID V GF NDRGKLIMACGTGKTFT+L++AE+ A +NG AR+L LVPSI+LLS
Sbjct 181 VEAIDMVMTGFG-NNDRGKLIMACGTGKTFTSLRLAEQYAKENGNKARVLFLVPSIALLS 239
Query 233 QTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQG 292
QTLREWTAQS +D+R FAVCSDTKV R+AED HD+ IPV+T+ ++ A +RAQG
Sbjct 240 QTLREWTAQSTMDLRCFAVCSDTKVGRAAEDIAPHDLEIPVSTNGEMISKTFASGKRAQG 299
Query 293 LTVVFCTYQSLPTVAKAQRL---GVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQY 349
L VVF TYQSLP V AQ G++ FDL++CDEAHRTTGVTLAG+D SNFVRVHD Y
Sbjct 300 LHVVFSTYQSLPAVHDAQMTEGGGIENFDLIICDEAHRTTGVTLAGEDASNFVRVHDEDY 359
Query 350 LKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTD 409
+KA +RLYMTATPR+F +SIK +A +HSAEL SMDDE +GPEFHRL FGEAVE+GLLTD
Sbjct 360 IKADKRLYMTATPRLFDDSIKGKAAEHSAELASMDDEAIYGPEFHRLGFGEAVEKGLLTD 419
Query 410 YKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGT------GIVAG 463
YKV+V+TVD+ V A L S S ++ L AS ++G WN LAKRSG G G
Sbjct 420 YKVLVMTVDEDVAAEALA---SAPSPDINLTTASAMIGAWNALAKRSGKLQGQKDGFDVG 476
Query 464 EPPMRRAVAFAKDIKTSKQVAELFPKVVEAYR 495
PM+R VAFAKDIK SKQ+AE FP ++E ++
Sbjct 477 AAPMQRTVAFAKDIKASKQIAESFPSLIETHK 508
>gi|302205704|gb|ADL10046.1| UvrABC system protein B [Corynebacterium pseudotuberculosis C231]
gi|308275940|gb|ADO25839.1| DNA or RNA helicase [Corynebacterium pseudotuberculosis I19]
gi|341824368|gb|AEK91889.1| UvrABC system protein B [Corynebacterium pseudotuberculosis PAT10]
Length=1648
Score = 564 bits (1454), Expect = 1e-158, Method: Compositional matrix adjust.
Identities = 279/512 (55%), Positives = 366/512 (72%), Gaps = 18/512 (3%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M S V++ R + G FE+LMV +F + PT+A+Q+D V W DW G+ DT
Sbjct 1 MASFEQVLDQLRDNQPQGKYGIAFEKLMVNFFRMAPTLAEQFDEVSRWGDWRYNGGKPDT 60
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIS 112
GID+VA+ ++ G++ AIQ KFY+ + ++ K IDSFF ASG++ F++R IIS
Sbjct 61 GIDIVAKRKEDGSWVAIQAKFYQESTSIQKRHIDSFFEASGQSFETEQGREHFSHRYIIS 120
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTD+W +NAE+ALA+Q++P RIG A+I+ +P+DWD+ +P +++V LT + + R HQ
Sbjct 121 TTDKWSKNAEEALANQMIPTSRIGRADISGAPVDWDVVFPGSEIEVKLTRKEPFKPRKHQ 180
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
+AI+ GF +DRGKLIMACGTGKTFT+L++AE+ A NGG AR+L LVPSI+LLS
Sbjct 181 AEAIEKALEGFN-AHDRGKLIMACGTGKTFTSLRLAEQFAHKNGGRARVLFLVPSIALLS 239
Query 233 QTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQG 292
QTLREWTAQ+ + +R+FAVCSDTK R AED +DV IPV+TD + L +R++G
Sbjct 240 QTLREWTAQATVSMRSFAVCSDTKAGRQAEDIASYDVEIPVSTDGKTLAEAFETGKRSKG 299
Query 293 LTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
L VVF TYQSLP V +AQ+ G+ +FDLV+CDEAHRTTGVTLAG D SNFV+VHD Y+KA
Sbjct 300 LHVVFSTYQSLPAVHEAQQQGLADFDLVICDEAHRTTGVTLAGQDASNFVKVHDPAYIKA 359
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
+RLYMTATPR+F +++K +A H AEL SMDDE +GPEFHRL FGEAVERGLLTDYKV
Sbjct 360 EKRLYMTATPRLFDDTVKGKAADHFAELASMDDEAIYGPEFHRLGFGEAVERGLLTDYKV 419
Query 413 MVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGT------GIVAGEPP 466
+V+TVD+ V A L S + L L AS I+G WN LAKRSGT G A + P
Sbjct 420 LVMTVDESVAAEALAHSPSEL---LNLTTASAIIGAWNALAKRSGTLQGKKGGFGADDQP 476
Query 467 MRRAVAFAKDIKTSKQVAELFPKVVEAYRELV 498
MRR VAFAKDIK S+Q+AE FP ++ A++EL+
Sbjct 477 MRRTVAFAKDIKHSRQIAESFPALIAAHQELL 508
>gi|227487648|ref|ZP_03917964.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227092342|gb|EEI27654.1| superfamily II DNA/RNA helicase [Corynebacterium glucuronolyticum
ATCC 51867]
Length=1071
Score = 560 bits (1442), Expect = 3e-157, Method: Compositional matrix adjust.
Identities = 285/520 (55%), Positives = 363/520 (70%), Gaps = 21/520 (4%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M + + + RK A+ G FE+LMV + + DP ++ +YD V+ WIDW R DT
Sbjct 1 MSTFREALAQLRKNQPKAKYGIGFEKLMVNFLKTDPLLSSEYDEVFRWIDW-RYANRPDT 59
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFF--------TASGKTGFTNRVIIS 112
GIDLVAR + ++TAIQCKFYE L K IDSFF T +GK F NR+II+
Sbjct 60 GIDLVARRCEDHSWTAIQCKFYEEKTYLQKSAIDSFFEDSGRSFETENGKEHFKNRLIIA 119
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTDRW NAEDAL DQL+P QRIG+ +IA+SP+DWD+ +P ++VNLT + R HQ
Sbjct 120 TTDRWSHNAEDALKDQLIPCQRIGLNDIAQSPLDWDVVFPGSQMRVNLTRKEPFTPRKHQ 179
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGS-ARILLLVPSISLL 231
Q+AID +GF +DRGKLIMACGTGKTFT+L++AE A GG AR+L LVPSISLL
Sbjct 180 QEAIDKTLQGFE-SHDRGKLIMACGTGKTFTSLRLAEAYANRRGGGRARVLFLVPSISLL 238
Query 232 SQTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEM-AHRRRA 290
SQTL+EWTAQS +++R++AVCSD KV + AED +DV IPV+T+ + + A +RA
Sbjct 239 SQTLKEWTAQSTVELRSYAVCSDAKVGKKAEDIAAYDVEIPVSTNGEEIAARLNAGGKRA 298
Query 291 QGLTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYL 350
GL VVF TYQSLP V AQ G+D FDLV+CDEAHRTTGVTLAG+D SNFVR+HD Y+
Sbjct 299 SGLHVVFSTYQSLPAVHSAQEHGLDPFDLVICDEAHRTTGVTLAGEDASNFVRIHDASYI 358
Query 351 KAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDY 410
+A +RLYMTATPR+F +++K +A +HSAEL SMDDE +GPEFHRL FGEAVE+GLLTDY
Sbjct 359 QANKRLYMTATPRLFDDNVKGKAAEHSAELASMDDEAIYGPEFHRLGFGEAVEKGLLTDY 418
Query 411 KVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG------TGIVAGE 464
KV+V+TVD+ V A + + G G + L AS ++G WNGLAKRSG G
Sbjct 419 KVLVMTVDEDVAAEVMGR--GGTEG-INLTLASSMIGAWNGLAKRSGREQGTKYGFDEAA 475
Query 465 PPMRRAVAFAKDIKTSKQVAELFPKVVEAYRELVDDGPGL 504
PM RAVAFAKDIKTSK +AE +P ++ Y++ + + L
Sbjct 476 EPMHRAVAFAKDIKTSKAIAEQYPALIHHYQDTLREAAAL 515
>gi|336325465|ref|YP_004605431.1| helicase/methyltransferase [Corynebacterium resistens DSM 45100]
gi|336101447|gb|AEI09267.1| helicase/methyltransferase [Corynebacterium resistens DSM 45100]
Length=1147
Score = 555 bits (1430), Expect = 7e-156, Method: Compositional matrix adjust.
Identities = 276/513 (54%), Positives = 363/513 (71%), Gaps = 20/513 (3%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M + +V+ R+ A+ G FE+LMV +F PT+A+Q+D V W DW G+ DT
Sbjct 98 MATFTEVLTQLRENQPQAKYGIAFEKLMVNFFRTAPTLAEQFDEVCRWKDWRYNGGKADT 157
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIS 112
GIDLVAR D + AIQ KFY+ T ++ K IDSFF ASGK+ F +R IIS
Sbjct 158 GIDLVARRADDHCWVAIQAKFYKSTTSIQKQHIDSFFEASGKSFETENGREHFAHRYIIS 217
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
TTDRW NAEDALA+Q++ RIGMA+IA +P++WD+A+P ++Q+NL+ K E R HQ
Sbjct 218 TTDRWSANAEDALANQMIETSRIGMADIANAPVNWDVAFPGSEIQINLSKKKAFEPRKHQ 277
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
+AI+ V +GF DRGKLIMACGTGKTFTAL++AE+ A G AR+L LVPSI+LLS
Sbjct 278 TEAIEKVLKGFET-RDRGKLIMACGTGKTFTALRLAEQFAETRGHRARVLFLVPSIALLS 336
Query 233 QTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQG 292
QTLREWTAQ+ +D+R+FAVCSDTK R+AED +D+ +PV+T+ ++ + +RA+G
Sbjct 337 QTLREWTAQATVDLRSFAVCSDTKAGRAAEDIAPYDLEVPVSTNGEMITEAFSIGKRAKG 396
Query 293 LTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
L VVF TYQSL V AQ+ G++ FDLV+CDEAHRTTGVTLAG+D S FVR+HD +Y++A
Sbjct 397 LHVVFSTYQSLGAVHDAQQKGLEPFDLVICDEAHRTTGVTLAGEDASAFVRIHDPEYIQA 456
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
+RLYMTATPR+F +S+K +A +HSAEL SMDDE FGPEFHRL FGEAV++GLLTDYKV
Sbjct 457 DKRLYMTATPRLFDDSVKGKAKEHSAELASMDDEAIFGPEFHRLGFGEAVDKGLLTDYKV 516
Query 413 MVLTVDQGVIAPRLQQELSGVSGELM-LDDASKIVGCWNGLAKRSGT------GIVAGEP 465
+V+TVD+GV A + Q G+ + L AS ++G W L KRSG+ G G
Sbjct 517 LVMTVDEGVAAEVMAQ----ADGQTVNLTTASAMIGAWTALTKRSGSLQGTKAGFEKGAK 572
Query 466 PMRRAVAFAKDIKTSKQVAELFPKVVEAYRELV 498
PM R VAFAKDI+ SKQ+ E FP ++ +Y+ ++
Sbjct 573 PMLRTVAFAKDIRASKQITESFPVLIRSYQNVL 605
>gi|300857975|ref|YP_003782958.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685429|gb|ADK28351.1| hypothetical protein cpfrc_00557 [Corynebacterium pseudotuberculosis
FRC41]
Length=1621
Score = 550 bits (1416), Expect = 3e-154, Method: Compositional matrix adjust.
Identities = 271/485 (56%), Positives = 354/485 (73%), Gaps = 18/485 (3%)
Query 28 MVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGIDLVARERDTGNYTAIQCKFYEPTHT 87
MV +F + PT+A+Q+D V W DW G+ DTGID+VA+ ++ G++ AIQ KFY+ + +
Sbjct 1 MVNFFRMAPTLAEQFDEVSRWGDWRYNGGKPDTGIDIVAKRKEDGSWVAIQAKFYQESTS 60
Query 88 LAKGDIDSFFTASGKT--------GFTNRVIISTTDRWGRNAEDALADQLVPVQRIGMAE 139
+ K IDSFF ASG++ F++R IISTTD+W +NAE+ALA+Q++P RIG A+
Sbjct 61 IQKRHIDSFFEASGQSFETEQGREHFSHRYIISTTDKWSKNAEEALANQMIPTSRIGRAD 120
Query 140 IAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVFRGFAVGNDRGKLIMACGTG 199
I+ +P+DWD+ +P +++V LT + + R HQ +AI+ GF +DRGKLIMACGTG
Sbjct 121 ISGAPVDWDVVFPGSEIEVKLTRKEPFKPRKHQAEAIEKALEGFN-AHDRGKLIMACGTG 179
Query 200 KTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSELDVRAFAVCSDTKVSR 259
KTFT+L++AE+ A NGG AR+L LVPSI+LLSQTLREWTAQ+ + +R+FAVCSDTK R
Sbjct 180 KTFTSLRLAEQFAHKNGGRARVLFLVPSIALLSQTLREWTAQATVSMRSFAVCSDTKAGR 239
Query 260 SAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTYQSLPTVAKAQRLGVDEFDL 319
AED +DV IPV+TD + L +R++GL VVF TYQSLP V +AQ+ G+ +FDL
Sbjct 240 QAEDIASYDVEIPVSTDGKTLAEAFETGKRSKGLHVVFSTYQSLPAVHEAQQQGLADFDL 299
Query 320 VMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPRIFTESIKDRADQHSAE 379
V+CDEAHRTTGVTLAG D SNFV+VHD Y+KA +RLYMTATPR+F +++K +A H AE
Sbjct 300 VICDEAHRTTGVTLAGQDASNFVKVHDPAYIKAEKRLYMTATPRLFDDTVKGKAADHFAE 359
Query 380 LVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIAPRLQQELSGVSGELML 439
L SMDDE +GPEFHRL FGEAVERGLLTDYKV+V+TVD+ V A L S + L L
Sbjct 360 LASMDDEAIYGPEFHRLGFGEAVERGLLTDYKVLVMTVDESVAAEALAHSPSEL---LNL 416
Query 440 DDASKIVGCWNGLAKRSGT------GIVAGEPPMRRAVAFAKDIKTSKQVAELFPKVVEA 493
AS I+G WN LAKRSGT G A + PMRR VAFAKDIK S+Q+AE FP ++ A
Sbjct 417 TTASAIIGAWNALAKRSGTLQGKKGGFGADDQPMRRTVAFAKDIKHSRQIAESFPALIAA 476
Query 494 YRELV 498
++EL+
Sbjct 477 HQELL 481
>gi|227504932|ref|ZP_03934981.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC
6940]
gi|227198441|gb|EEI78489.1| superfamily II DNA/RNA helicase [Corynebacterium striatum ATCC
6940]
Length=1243
Score = 548 bits (1413), Expect = 7e-154, Method: Compositional matrix adjust.
Identities = 268/517 (52%), Positives = 359/517 (70%), Gaps = 21/517 (4%)
Query 1 MGSVHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDT 60
M + +V+ R+ G KFE+LMV YF DP + Q+ V W DW G+ DT
Sbjct 4 MSAFGEVLTQLRENQPQGSYGIKFEKLMVNYFRTDPVLQDQFSEVSRWSDWEFNGGKQDT 63
Query 61 GIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIS 112
GIDLVAR D + AIQCKFY+P + K +DSFF ASG + F R+IIS
Sbjct 64 GIDLVARRADDDAWVAIQCKFYKPDTYIQKRHLDSFFEASGHSFTTDKGTESFAQRIIIS 123
Query 113 TTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQ 172
T++RW +NAE L QL+P RIG A IAESPI+WD+ +P ++++NLT + RPHQ
Sbjct 124 TSERWSKNAEAMLEHQLIPTNRIGTAAIAESPINWDVTFPGSEIEINLTRREVFSPRPHQ 183
Query 173 QQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLS 232
Q+AI GF +DRGKLIMACGTGKTFTAL++AE+ A +NGG AR+L LVPSISLLS
Sbjct 184 QEAISKAIAGFET-HDRGKLIMACGTGKTFTALRLAEQYAENNGGRARVLFLVPSISLLS 242
Query 233 QTLREWTAQSE--LDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRA 290
QTL+EWTAQ++ L ++++AVCSDTKVS+ AED +D+ +PV+T+ + + A +R
Sbjct 243 QTLKEWTAQNQEHLPLKSYAVCSDTKVSKKAEDIASYDLEVPVSTNGKNIAERTAQGKRR 302
Query 291 QGLTVVFCTYQSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQY 349
G+ V+F TYQS+ + +AQ G+D+FDLV+CDEAHRTTGVTL G+D SNFV++HD +Y
Sbjct 303 AGINVIFSTYQSIEAIHEAQAEYGMDDFDLVICDEAHRTTGVTLVGEDASNFVKIHDEKY 362
Query 350 LKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTD 409
+KA++RLYMTATPR+F +++K +A++HSAEL SMDDE +GPEF+RL FGEAV++GLLTD
Sbjct 363 IKASKRLYMTATPRLFDDNVKGKAEEHSAELASMDDEAIYGPEFYRLGFGEAVDKGLLTD 422
Query 410 YKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG------TGIVAG 463
YKV+V+TV++ + A L + + E+ L AS ++G WNGLAKRSG +G A
Sbjct 423 YKVLVMTVEEDIAADVLA---ANPTNEINLTTASAMIGAWNGLAKRSGAEQDTKSGFEAN 479
Query 464 EPPMRRAVAFAKDIKTSKQVAELFPKVVEAYRELVDD 500
PM R VAFAKDIK SK + E FP ++ Y+E + D
Sbjct 480 AQPMLRTVAFAKDIKASKTIQETFPTLIRQYQEQLKD 516
>gi|345446919|gb|AEN91936.1| Adenine specific DNA methyltransferase, putative [Bacillus megaterium
WSH-002]
Length=1583
Score = 538 bits (1385), Expect = 1e-150, Method: Composition-based stats.
Identities = 259/508 (51%), Positives = 350/508 (69%), Gaps = 5/508 (0%)
Query 1 MGSVHDVIEAFRK-APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTD 59
M ++++ R+ + S E+G +FEQLMV+YF+ DP +++ VW W D+P R + D
Sbjct 1 MNGFNELLNELREISKSEREKGGRFEQLMVQYFKTDPLYKDKFNNVWLWNDFPLRENKPD 60
Query 60 TGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGR 119
TGIDLVA+E++ G Y AIQCKFY H + KGDIDSFFTASGK +++R+I+STTD W +
Sbjct 61 TGIDLVAQEKENGEYCAIQCKFYGEGHRIQKGDIDSFFTASGKNIYSSRIIVSTTDEWSK 120
Query 120 NAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAV 179
NAE+AL DQ P+ RI +A++A+SPIDW ++ + L P K LR HQ +A++ V
Sbjct 121 NAEEALEDQSKPITRIRLADLAKSPIDWSKFSFSNLENMKLKPKK--VLRKHQCEALENV 178
Query 180 FRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGS-ARILLLVPSISLLSQTLREW 238
RGF DRG+++MACGTGKTFT+LKIAE N +IL LVPSISLLSQTLREW
Sbjct 179 MRGFEKA-DRGQMVMACGTGKTFTSLKIAEEFVKGNEEKPTKILYLVPSISLLSQTLREW 237
Query 239 TAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFC 298
SE+ FAVCSD KV++++ED + HD+ P TT +L+ +M + ++VVF
Sbjct 238 NNDSEISFNTFAVCSDKKVTKNSEDINSHDLGFPSTTKPEILVQQMNSVDNDKEMSVVFS 297
Query 299 TYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYM 358
TYQS+ +++AQ++G+ EFDL++ DEAHRTTGVTLAGD+ES+F+R+HD +++ +RLY
Sbjct 298 TYQSIEVISEAQKIGLGEFDLIIGDEAHRTTGVTLAGDNESHFIRIHDQNFIRGKKRLYQ 357
Query 359 TATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVD 418
TATP+IF E K +AD+H+A L SMD+ FG EFH L FGEAV RGLLTDYKVMVL VD
Sbjct 358 TATPKIFAEETKTKADEHNALLCSMDNREIFGEEFHYLGFGEAVNRGLLTDYKVMVLAVD 417
Query 419 QGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEPPMRRAVAFAKDIK 478
+ I Q EL+ + EL L+D KI GCWNGL+K+ PPM+RAVAF K IK
Sbjct 418 ETYIHSAFQTELANENNELTLNDVVKISGCWNGLSKKEANSRKTFGPPMKRAVAFTKSIK 477
Query 479 TSKQVAELFPKVVEAYRELVDDGPGLAC 506
SK +A++F +V+ + +L D L C
Sbjct 478 DSKLIADMFENLVDEFIQLDDSDSSLRC 505
>gi|119952417|ref|YP_950133.1| putative helicase [Arthrobacter aurescens TC1]
gi|119951547|gb|ABM10457.1| putative Helicase [Arthrobacter aurescens TC1]
Length=1605
Score = 492 bits (1266), Expect = 8e-137, Method: Compositional matrix adjust.
Identities = 248/479 (52%), Positives = 330/479 (69%), Gaps = 14/479 (2%)
Query 19 ERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGIDLVARERDTGNYTAIQ 78
++G++FE+L+ Y +LDP A+Q+ VW W +WP R G DTGIDLVA ERDTG+ AIQ
Sbjct 22 DKGSRFERLIRSYLQLDPQYAEQFSDVWLWDEWPGRDGHVDTGIDLVAAERDTGDLVAIQ 81
Query 79 CKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAEDALADQLVPVQRIGMA 138
CKFY+P L K IDSFFTA+GK F+ +I+ST+D+W ++AEDAL Q PV R+
Sbjct 82 CKFYDPARPLRKEQIDSFFTAAGKKEFSRGLIVSTSDKWSKHAEDALRGQSKPVSRLRFQ 141
Query 139 EIAESPIDW---DIAWPADDLQVNLTPAKRHELRPHQQQAIDAVFRGFAVGNDRGKLIMA 195
++ +S IDW D+ P + + + RPHQ+ AI+ V GF +DRGKLIMA
Sbjct 142 DLEDSTIDWSTFDLDQPEE-----MERKDKKRPRPHQRAAIEKVREGFQ-AHDRGKLIMA 195
Query 196 CGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSELDVRAFAVCSDT 255
CGTGKT+T+L+I E + GGS +L LVPSISLL QTL EWTA+SE+ +R AVCSDT
Sbjct 196 CGTGKTYTSLRIVEDMVP-VGGS--VLFLVPSISLLQQTLTEWTAESEVPLRPLAVCSDT 252
Query 256 KVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTYQSLPTVAKAQRLGVD 315
KV ++ ED HD+ P +TD++ L +TVVF TYQS+ VA+AQ LG+
Sbjct 253 KVGKNHEDLSAHDLAFPASTDSQKLYSRSRKSTGQAAVTVVFSTYQSIDVVAQAQGLGLG 312
Query 316 EFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPRIFTESIKDRADQ 375
EFDL++CDEAHRTTG+T DD+S FVRVHD ++KA +RLYMTATPRI+ + K +A +
Sbjct 313 EFDLIVCDEAHRTTGLTQGDDDDSAFVRVHDQDFIKAKKRLYMTATPRIYVQESKTKAAE 372
Query 376 HSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIAPRLQQELSGVSG 435
+ ++ SMDDE +GPEFH L FGEAVER LL+DYKV+VL V++ + QQ L+ +
Sbjct 373 NDVKVFSMDDEAAYGPEFHHLGFGEAVERNLLSDYKVLVLAVNEESVNKTFQQLLTDDNN 432
Query 436 ELMLDDASKIVGCWNGLAKRS--GTGIVAGEPPMRRAVAFAKDIKTSKQVAELFPKVVE 492
EL LDD +KIVGCWNGLAKR + + PM+RAVAFA++IK SK++A +F +V +
Sbjct 433 ELNLDDVAKIVGCWNGLAKRGVDQSRLEVTGAPMKRAVAFAQNIKESKKIASMFAEVTD 491
>gi|309812063|ref|ZP_07705823.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
gi|308433942|gb|EFP57814.1| helicase C-terminal domain protein [Dermacoccus sp. Ellin185]
Length=1592
Score = 489 bits (1258), Expect = 6e-136, Method: Compositional matrix adjust.
Identities = 261/505 (52%), Positives = 333/505 (66%), Gaps = 19/505 (3%)
Query 4 VHDVIEAFR-KAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGI 62
+H+V++ R KA S ++G++FEQLM Y + DP A Q+ VW W DWP R G+TDTGI
Sbjct 1 MHEVLDDMRAKATSERDKGSRFEQLMAAYLQTDPLFADQFSDVWLWQDWPGREGKTDTGI 60
Query 63 DLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAE 122
DLVA +R TG AIQCKFY HT++KGDIDSF +ASG + F RVI+ T WG+NAE
Sbjct 61 DLVAVDRVTGENVAIQCKFYAENHTVSKGDIDSFLSASGTSKFGQRVIVDTGAPWGKNAE 120
Query 123 DALADQLVPVQRIGMAEIAESPIDWD-IAWPADDLQVNLTPAKRHELRPHQQQAIDAVFR 181
D + DQ V V+RI +A++ S +DW W A D +L + RPHQ+ AID V
Sbjct 121 DTIRDQTVKVRRISLADLQNSNVDWSKFTWSAPD---SLPTVGKKTPRPHQRTAIDKVLD 177
Query 182 GFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQ 241
G +DRGKLIMACGTGKTFT+L++AE G +L LVPSISLLSQT+REW+A
Sbjct 178 GLKT-HDRGKLIMACGTGKTFTSLRLAEEQV---GAGGSVLFLVPSISLLSQTVREWSAN 233
Query 242 SELDVRAFAVCSDTKV---SRSAEDYHVHDVPIPVTTDARVLLHEMAH-RRRAQGLTVVF 297
+ A A+CSD K S + ED DV +P +T+ V+ A R + +TV+
Sbjct 234 KLIPQDAIAICSDPKSTSRSNAVEDISAVDVALPASTNNAVVQERWAKAAERPESMTVIL 293
Query 298 CTYQSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRL 356
TYQS+ VA AQ + G FDL++CDEAHRTTGV++AG +ES FVRVH+ ++ +RL
Sbjct 294 STYQSIDVVAGAQAQGGFGPFDLIICDEAHRTTGVSVAGQNESAFVRVHNNDVIQGTKRL 353
Query 357 YMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLT 416
YMTATPRIF E K +A +AEL SMDDE FGPE HRL FGEAVE+ LLTDY+V++L
Sbjct 354 YMTATPRIFGEDSKKKAFDGAAELASMDDESKFGPELHRLGFGEAVEKNLLTDYRVLILA 413
Query 417 VDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEP--PMRRAVAFA 474
VD+ + Q EL+ GE+ L DA+++VGCW GLAK T V GE PM+RAVAFA
Sbjct 414 VDEEYVTRNFQTELAQ-DGEIQLGDAARMVGCWQGLAKHFDT--VEGESLAPMKRAVAFA 470
Query 475 KDIKTSKQVAELFPKVVEAYRELVD 499
KDIKTSK +A+ FP VV + VD
Sbjct 471 KDIKTSKAIAQAFPDVVNKHVAAVD 495
>gi|116662287|ref|YP_829341.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
gi|116613051|gb|ABK05760.1| type III restriction enzyme, res subunit [Arthrobacter sp. FB24]
Length=1613
Score = 482 bits (1241), Expect = 6e-134, Method: Compositional matrix adjust.
Identities = 249/484 (52%), Positives = 335/484 (70%), Gaps = 17/484 (3%)
Query 11 FRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGIDLVARERD 70
+ A + ++GTKFE+L RY +L+P + Q+ VW W +WP+RRG+ DTGIDLVA++R
Sbjct 14 YFSAKNERDKGTKFERLFKRYLQLEPKYSDQFSDVWLWDEWPDRRGQVDTGIDLVAKDRY 73
Query 71 TGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAEDALADQLV 130
TG TAIQCKFY+P TL K IDSFFTA+GK F+ +++STTD+W ++AE AL Q
Sbjct 74 TGELTAIQCKFYDPQRTLDKKHIDSFFTAAGKVDFSYGLVVSTTDKWSKHAETALEGQSK 133
Query 131 PVQRIGMAEIAESPIDW---DIAWPADDLQVNLTPAKRHELRPHQQQAIDAVFRGFAVGN 187
P+ R+ + ++A+S IDW D+ P + Q++ R E R +Q+ AID V GF +
Sbjct 134 PMTRLRLQDLADSTIDWAEFDLDRPEEMRQID-----RKEPRKYQRDAIDDVITGFQT-S 187
Query 188 DRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSELDVR 247
DRGKLIMACGTGKT+T+LKI E + GG+A L LVPSI+LL QTL EWTAQ+ + +R
Sbjct 188 DRGKLIMACGTGKTYTSLKIVEEMVP-VGGTA--LFLVPSIALLQQTLNEWTAQATVPLR 244
Query 248 AFAVCSDTKVSR-SAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCTYQSLPTV 306
AVCSDTKV R ED VHD+ P TTD + L + + + +TVVF TYQS+ +
Sbjct 245 PLAVCSDTKVGRREHEDVSVHDLAFPATTDPQKLFYRTSISTGQEAVTVVFSTYQSIDVI 304
Query 307 AKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPRIFT 366
A+AQ LG+ +FD+++CDEAHRTTG+T A D+S FVRVHD YL+A +RLYMTATPRI+
Sbjct 305 AQAQALGLPDFDVILCDEAHRTTGITEAEHDDSAFVRVHDQAYLRAKKRLYMTATPRIYV 364
Query 367 ESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIAPRL 426
+ K +A ++ + SMDD +GPEFH L FG+AVE G L+DYKV+VL V++ ++ R
Sbjct 365 QDSKAKAAENDVAVYSMDDVAVYGPEFHHLGFGKAVEMGHLSDYKVLVLAVNEEAVS-RS 423
Query 427 QQELSGVSGELMLDDASKIVGCWNGLAKRSGTG---IVAGEPPMRRAVAFAKDIKTSKQV 483
Q L +G+L LDDA++IVGCWNGL+KR G + PM RAVAFA++IK SK++
Sbjct 424 FQGLFQENGDLSLDDAARIVGCWNGLSKRGVNGERLSIGDTSPMNRAVAFARNIKESKKL 483
Query 484 AELF 487
AE F
Sbjct 484 AEQF 487
>gi|325066260|ref|ZP_08124933.1| putative helicase [Actinomyces oris K20]
Length=1703
Score = 482 bits (1240), Expect = 7e-134, Method: Compositional matrix adjust.
Identities = 258/496 (53%), Positives = 336/496 (68%), Gaps = 20/496 (4%)
Query 20 RGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGIDLVARERDTGNYTAIQC 79
+GT FE+L+ ++ DP A+++D VW W +WPER R D GIDLVARER+TG A+QC
Sbjct 27 KGTAFERLVRQFLLTDPRYAERFDEVWMWSEWPERGARPDRGIDLVARERETGELCAVQC 86
Query 80 KFYEP-THTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAEDALADQLVPVQRIGMA 138
KFY+P T + K D+DSF SG FT+R+ +STT+RW AE+ ++ Q +PV R+G+
Sbjct 87 KFYDPQTGVITKNDVDSFLAESGTGEFTSRLFVSTTERWNSAAEETVSRQAIPVSRVGLE 146
Query 139 EIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVFRGFAVGNDRGKLIMACGT 198
++ S IDWD ++ + +V + + LR HQ++A+DAV G + DRGKLIMACGT
Sbjct 147 DLFNSTIDWD-SFSLETPEVMVRTGGK-SLREHQKRALDAVSAGLSTA-DRGKLIMACGT 203
Query 199 GKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSELDVRAFAVCSDTKVS 258
GKTFT+L+IAE + G R+L LVPSI+LLSQTL EW+A+SE+ +R+FAVCSD KV
Sbjct 204 GKTFTSLRIAEAMVGPGG---RVLFLVPSIALLSQTLMEWSAESEVPLRSFAVCSDAKVG 260
Query 259 RS------AEDYHVHDVPIPVTTDARVLLHEMAHR----RRAQGLTVVFCTYQSLPTVAK 308
+ +ED V D+ IP TTD L + + R +TV+F TYQS+ VA+
Sbjct 261 KGRKRTSLSEDISVVDLAIPATTDGAALANRLTRRPAPVNGTAPMTVLFSTYQSIDAVAQ 320
Query 309 AQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMTATPRIFTES 368
AQ LG FDLV+CDEAHRTTG T++G DES FVRVH+ YL A++RLYMTATPRI+ ++
Sbjct 321 AQELGAPGFDLVICDEAHRTTGATVSGMDESAFVRVHNDDYLHASKRLYMTATPRIYDDT 380
Query 369 IKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQGVIAPRLQQ 428
K RA Q +A L SMDD T+G E RL FGEAV R LLTDYKV+VLTV + IA ++Q
Sbjct 381 TKARAGQKNAILASMDDVETYGEELFRLGFGEAVSRSLLTDYKVLVLTVSEDQIADQMQS 440
Query 429 ELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGE--PPMRRAVAFAKDIKTSKQVAEL 486
L+ G+L LDDA++IVGCWN LAKRS G+ PMR AVAFA+DIKTSK+ A
Sbjct 441 SLAQ-DGQLTLDDAARIVGCWNALAKRSVDTADYGKDIQPMRTAVAFARDIKTSKRFASS 499
Query 487 FPKVVEAYRELVDDGP 502
F V E YR + D P
Sbjct 500 FRNVAEDYRLTLTDDP 515
>gi|282897281|ref|ZP_06305283.1| hypothetical protein CRD_02205 [Raphidiopsis brookii D9]
gi|281197933|gb|EFA72827.1| hypothetical protein CRD_02205 [Raphidiopsis brookii D9]
Length=624
Score = 477 bits (1227), Expect = 2e-132, Method: Compositional matrix adjust.
Identities = 258/516 (50%), Positives = 337/516 (66%), Gaps = 24/516 (4%)
Query 9 EAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGIDLVARE 68
E + + S E+G KFE+LM+ Y + DP + + VW W+D+P+R DTGIDLV
Sbjct 9 EIKQTSSSTREQGDKFERLMLNYLKTDPIYNEYFSQVWLWMDFPKRANMPDTGIDLVGMI 68
Query 69 RDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGRNAEDALADQ 128
RDTG+Y AIQCK Y+ TL K DIDSFFTASG F R+IISTT +W ++A+ AL DQ
Sbjct 69 RDTGDYCAIQCKCYDLNQTLQKSDIDSFFTASGTKVFKKRMIISTTAKWSKHAQAALDDQ 128
Query 129 LVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDAVFRGFAVGND 188
+PV R + ++ SPIDW+ + + L P K+H +RPHQQ A++ V F D
Sbjct 129 QIPVIRATIYDLENSPIDWNKYSLQNPDILQLKP-KKH-IRPHQQIALEKVLTQFEHA-D 185
Query 189 RGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWTAQSELDVRA 248
RGKLIMACGTGKTFTALKIAE + S IL LVPSISLLSQTLREWTA+ ++D +
Sbjct 186 RGKLIMACGTGKTFTALKIAEHVPK---HSHLILFLVPSISLLSQTLREWTAERQIDFHS 242
Query 249 FAVCSDTKVSRS--------AEDYHVHDVPIPVTTDARVLLH-----EMAHRRRAQGLTV 295
AVCSD V ++ D V+D+ P TT A+ ++ + ++ LTV
Sbjct 243 IAVCSDVNVGKNKTKSQNDDTADITVNDLAFPPTTKAQDIIKSYQTIQKTNQNNPPKLTV 302
Query 296 VFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARR 355
+F TYQS+ +++AQ+ G+ E DL++CDEAHRTTG+T+ G DES F +VHD +LKA +R
Sbjct 303 IFSTYQSIQAISEAQQKGLPEIDLIICDEAHRTTGITITGTDESYFTKVHDQDFLKAKKR 362
Query 356 LYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVL 415
LYMTATPRI+++ K +A ++ A L SMDD TFG EFHRL FGEAV GLLTDYKVMVL
Sbjct 363 LYMTATPRIYSDDTKVQAKENDASLYSMDDLHTFGKEFHRLGFGEAVSTGLLTDYKVMVL 422
Query 416 TVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGE----PPMRRAV 471
VD+ ++ QQ+L+ EL LDDA KIVGCWNGLAKR I GE PM+RAV
Sbjct 423 AVDEKFVSATFQQQLADADNELKLDDAVKIVGCWNGLAKRLIKDIQGGEIEDSTPMKRAV 482
Query 472 AFAKDIKTSKQVAELFPKVVEAYR-ELVDDGPGLAC 506
AF++ IK S+++ LF ++ Y+ + DD L C
Sbjct 483 AFSRSIKDSQRIVNLFAGIINDYQYKNPDDETVLQC 518
>gi|138896441|ref|YP_001126894.1| hypothetical protein GTNG_2804 [Geobacillus thermodenitrificans
NG80-2]
gi|134267954|gb|ABO68149.1| Conserved hypothetical protein [Geobacillus thermodenitrificans
NG80-2]
Length=1586
Score = 475 bits (1222), Expect = 9e-132, Method: Compositional matrix adjust.
Identities = 253/511 (50%), Positives = 340/511 (67%), Gaps = 17/511 (3%)
Query 1 MGSVHDVIEAFRKAPSNA-ERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTD 59
M +++DV+E R N E+G FE+LMV Y +P Q + VW W+DWP R GRTD
Sbjct 1 MTTIYDVLEQLRNVARNKREQGELFERLMVSYLRTEPHYKQLFSNVWRWMDWPGREGRTD 60
Query 60 TGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGR 119
TGIDLVA E TG+ AIQCKFY+P H + K D+DSFFT SGK F R+I+ T +
Sbjct 61 TGIDLVAEESLTGDIWAIQCKFYDPDHKIQKSDLDSFFTESGKHPFRKRMIVVTAPM-SK 119
Query 120 NAEDALADQLVPVQRIGMAEIAESPIDWDI-AWPADDLQVNLTPAKRHELRPHQQQAIDA 178
+A +A DQ + + M ++ +S IDW + +W D L ++ ELR HQ++AI
Sbjct 120 HAYEACHDQQIETTILDMDKLEQSTIDWGLFSWNRPDA---LPVREKKELREHQKEAIAD 176
Query 179 VFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREW 238
V GF +DRGKLIMACGTGKTFTALK+ E++ D GG +L LVPSI+LLSQTLREW
Sbjct 177 VLEGFK-QHDRGKLIMACGTGKTFTALKLTEKMV-DRGG--LVLFLVPSIALLSQTLREW 232
Query 239 TAQSELDVRAFAVCSDTKVSRS-AEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVF 297
TA++E+ +RAFAVCSDTKV + +ED V D+ P TT+A L +++ ++ + TV+F
Sbjct 233 TAEAEIPLRAFAVCSDTKVGKGDSEDLRVTDLAYPATTNAETLANQV-NKELGKKTTVIF 291
Query 298 CTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLY 357
TYQS+ + AQ+ G+ FDLV+CDEAHRTTGV + GD+ S F +VH+ ++LKA +RLY
Sbjct 292 STYQSIDVICNAQKAGMPAFDLVICDEAHRTTGV-VQGDEASYFTKVHEEKFLKAKKRLY 350
Query 358 MTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTV 417
MTATPRI+ + K +A + +L SMDDE +GPEFHRL+F +AVE G+L+DYKV++L V
Sbjct 351 MTATPRIYADESKTKARDANVQLYSMDDETVYGPEFHRLNFSKAVELGILSDYKVVILAV 410
Query 418 DQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKR---SGTGIVAGEPPMRRAVAFA 474
D+ + RL + ++ LDD +KIVGCWN L+KR GT ++ PM+RAVAF
Sbjct 411 DEKHVLRRLGYRIHDEKDQVKLDDVAKIVGCWNALSKRVMPDGTSMLEDPRPMKRAVAFT 470
Query 475 KDIKTSKQVAELFPKVVEAY-RELVDDGPGL 504
IK SK+V ELF + VE Y R L +D L
Sbjct 471 TSIKNSKKVTELFEQTVEDYCRSLPEDDENL 501
>gi|206603764|gb|EDZ40244.1| Putative helicase [Leptospirillum sp. Group II '5-way CG']
Length=1625
Score = 474 bits (1219), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 260/522 (50%), Positives = 349/522 (67%), Gaps = 27/522 (5%)
Query 4 VHDVIEAFRK-APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERR----GRT 58
+ DV+E+FR+ A S E+G FE+L+V + + DP +++ VW W +WP+ +
Sbjct 3 IQDVLESFRRIAKSEREKGDLFERLVVAFLKTDPLFRDRFEDVWIWKEWPDLYLSGFDQR 62
Query 59 DTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWG 118
DTGIDLVA+ER+ G+ AIQCKF++P++T+ K DIDSFFT SGK FT+R+I+STTD+W
Sbjct 63 DTGIDLVAKEREGGS-CAIQCKFFDPSYTIDKKDIDSFFTLSGKEPFTSRLIVSTTDKWS 121
Query 119 RNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDA 178
+AE+AL +Q + V RIG+A++ S IDW P + ++ K+ L PHQ+ A++
Sbjct 122 VHAEEALRNQKIKVNRIGLADLESSLIDWTRIVPTEPERLFFR--KKKSLLPHQKVAVEK 179
Query 179 VFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREW 238
V GF +DRGKLIMACGTGKTFT+LKIAE + +NG IL LVPSI+L+SQTL EW
Sbjct 180 VIEGFT-NHDRGKLIMACGTGKTFTSLKIAETLVPENG---LILYLVPSIALVSQTLSEW 235
Query 239 TAQSELDVRAFAVCSDTKVSRSA----EDYHVHDVPIPVTTDARVL-LHEMAHRRRAQGL 293
T +SE + +F VCSDT V + ED VHD+ P TTD L H + H+R G
Sbjct 236 TRESEGFLHSFVVCSDTTVGKKKDNWPEDLRVHDLAYPATTDPEKLSKHVLRHQREGIGR 295
Query 294 TVVFCTYQSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
TVVF TYQS+ + AQ + + FDL +CDEAHRTTGVT G+ +S FV VH Y+ A
Sbjct 296 TVVFSTYQSIQVIHDAQEKFSLPSFDLAICDEAHRTTGVTAQGEADSAFVAVHRKDYIGA 355
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
+RLYMTATPRI+T+S K +A Q +L SMDD +GPEFHRL FGEAV+ LL+DYKV
Sbjct 356 KKRLYMTATPRIYTDSAKSKARQSEFQLYSMDDPEIYGPEFHRLGFGEAVKENLLSDYKV 415
Query 413 MVLTVDQGVIAPRLQQELSGVSG-ELMLDDASKIVGCWNGLAKR--SGTGIVAGEP-PMR 468
+VL VDQ I+ R L+ +SG E+ L DA+KI+GCWNGL+K+ S G V +P PMR
Sbjct 416 LVLMVDQEDISRRFPY-LTDISGKEIPLPDAAKIIGCWNGLSKKMVSEDGEVRSDPFPMR 474
Query 469 RAVAFAKDIKTSKQVAELFPKVVEAYRELV----DDGPGLAC 506
RAVAF++ IK S +A+ F +V+ Y E + ++ P L C
Sbjct 475 RAVAFSRSIKDSDALAKRFSHIVDQYLESLSVDTEEDPPLKC 516
>gi|124516073|gb|EAY57582.1| putative helicase [Leptospirillum rubarum]
Length=809
Score = 473 bits (1218), Expect = 3e-131, Method: Compositional matrix adjust.
Identities = 260/522 (50%), Positives = 349/522 (67%), Gaps = 27/522 (5%)
Query 4 VHDVIEAFRK-APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERR----GRT 58
+ DV+E+FR+ A S E+G FE+L+V + + DP +++ VW W +WP+ +
Sbjct 3 IQDVLESFRRIAKSEREKGDLFERLVVAFLKTDPLFRDRFEDVWIWKEWPDLYLSGFDQR 62
Query 59 DTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWG 118
DTGIDLVA+ER+ G+ AIQCKF++P++T+ K DIDSFFT SGK FT+R+I+STTD+W
Sbjct 63 DTGIDLVAKEREGGS-CAIQCKFFDPSYTIDKKDIDSFFTLSGKEPFTSRLIVSTTDKWS 121
Query 119 RNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDA 178
+AE+AL +Q + V RIG+A++ S IDW P + ++ K+ L PHQ+ A++
Sbjct 122 VHAEEALRNQKIKVNRIGLADLESSLIDWTRIVPTEPERLFFR--KKKSLLPHQKVAVEK 179
Query 179 VFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREW 238
V GF +DRGKLIMACGTGKTFT+LKIAE + +NG IL LVPSI+L+SQTL EW
Sbjct 180 VIEGFT-NHDRGKLIMACGTGKTFTSLKIAETLVPENG---LILYLVPSIALVSQTLSEW 235
Query 239 TAQSELDVRAFAVCSDTKVSRSA----EDYHVHDVPIPVTTDARVL-LHEMAHRRRAQGL 293
T +SE + +F VCSDT V + ED VHD+ P TTD L H + H+R G
Sbjct 236 TRESEGFLHSFVVCSDTTVGKKKDNWPEDLRVHDLAYPATTDPEKLSKHVLRHQREGIGR 295
Query 294 TVVFCTYQSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
TVVF TYQS+ + AQ + + FDL +CDEAHRTTGVT G+ +S FV VH Y+ A
Sbjct 296 TVVFSTYQSIQVIHDAQEKFSLPSFDLAICDEAHRTTGVTAQGEADSAFVAVHRKDYIGA 355
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
+RLYMTATPRI+T+S K +A Q +L SMDD +GPEFHRL FGEAV+ LL+DYKV
Sbjct 356 KKRLYMTATPRIYTDSAKSKARQSEFQLYSMDDPEIYGPEFHRLGFGEAVKENLLSDYKV 415
Query 413 MVLTVDQGVIAPRLQQELSGVSG-ELMLDDASKIVGCWNGLAKR--SGTGIVAGEP-PMR 468
+VL VDQ I+ R L+ +SG E+ L DA+KI+GCWNGL+K+ S G V +P PMR
Sbjct 416 LVLMVDQEDISRRFPY-LTDISGKEIPLPDAAKIIGCWNGLSKKMVSEDGEVRSDPFPMR 474
Query 469 RAVAFAKDIKTSKQVAELFPKVVEAYRELV----DDGPGLAC 506
RAVAF++ IK S +A+ F +V+ Y E + ++ P L C
Sbjct 475 RAVAFSRSIKDSDALAKRFSHIVDQYLESLSVDTEEDPPLKC 516
>gi|251772067|gb|EES52637.1| putative helicase [Leptospirillum ferrodiazotrophum]
Length=1618
Score = 459 bits (1181), Expect = 5e-127, Method: Compositional matrix adjust.
Identities = 256/522 (50%), Positives = 342/522 (66%), Gaps = 27/522 (5%)
Query 4 VHDVIEAFRK-APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRG----RT 58
+ DV+++FR+ A S E+G FE+L+V + + DP +++ VW W +WP+ +
Sbjct 3 IQDVLKSFRRIAKSEREKGDLFERLVVAFLKTDPLFRDRFEDVWIWKEWPDLYSSGFDQR 62
Query 59 DTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWG 118
DTGIDLVARER+ G Y AIQCKF++ +T+ K DIDSFFT SGK FT+R+I+STT++W
Sbjct 63 DTGIDLVARERE-GGYCAIQCKFFDTNYTIDKKDIDSFFTLSGKEPFTSRLIVSTTNKWS 121
Query 119 RNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAIDA 178
+AE+AL +Q + V RIG++ + S IDW P + ++ P K L HQ+ A++
Sbjct 122 VHAEEALKNQKIKVNRIGLSGLEASLIDWSRIVPEEPERLFFRPKKF--LLSHQKIAVEK 179
Query 179 VFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREW 238
V GF V +DRGKLIMACGTGKTFT+L+IAE + D G IL LVPSI+L+SQTL EW
Sbjct 180 VIEGFKV-HDRGKLIMACGTGKTFTSLRIAESLVPDGG---LILYLVPSIALVSQTLSEW 235
Query 239 TAQSELDVRAFAVCSDTKVSRS----AEDYHVHDVPIPVTTDARVL-LHEMAHRRRAQGL 293
+SE + +F VCSDT V + ED VHD+ P TTD L H + H+R G
Sbjct 236 LRESEGLLHSFVVCSDTTVGKKKNDWTEDIRVHDLAYPATTDPEKLSKHVLRHQRSVTGR 295
Query 294 TVVFCTYQSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKA 352
VVF TYQS+ + AQ + + FDL +CDEAHRTTGVT GD +S FV VH +Y+ A
Sbjct 296 AVVFSTYQSIQVIHDAQEKFSLPSFDLAICDEAHRTTGVTAQGDTDSAFVAVHRKEYITA 355
Query 353 ARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKV 412
+RLYMTATPRI+T+S K +A Q +L SMDD +GPEFHRL FGEAV+ LL+DYKV
Sbjct 356 KKRLYMTATPRIYTDSAKSKARQSEFQLYSMDDPEVYGPEFHRLGFGEAVKEDLLSDYKV 415
Query 413 MVLTVDQGVIAPRLQQELSGVSG-ELMLDDASKIVGCWNGLAKR--SGTGIVAGE-PPMR 468
+VL VDQ I+ R L+ VSG E+ L DA+KI+GCWNGL+K+ S G + + PMR
Sbjct 416 LVLMVDQEDISRRFPY-LTDVSGKEIPLPDAAKIIGCWNGLSKKMVSEDGEIRSDLSPMR 474
Query 469 RAVAFAKDIKTSKQVAELFPKVVEAYRELV----DDGPGLAC 506
RAVAF++ IK S +A+ F +V+ Y E + D+ L C
Sbjct 475 RAVAFSRSIKDSDALAKRFSHIVDQYLESLSVDTDEDSPLKC 516
>gi|124262646|ref|YP_001023116.1| adenine specific DNA methyltransferase, putative [Methylibium
petroleiphilum PM1]
gi|124261892|gb|ABM96881.1| adenine specific DNA methyltransferase, putative [Methylibium
petroleiphilum PM1]
Length=1615
Score = 457 bits (1176), Expect = 2e-126, Method: Compositional matrix adjust.
Identities = 261/528 (50%), Positives = 334/528 (64%), Gaps = 52/528 (9%)
Query 3 SVHDVIEAFRKAP-SNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTG 61
S+ DV+ FR+A +N + GT FE+L Y DP + + VW W +WP+R D G
Sbjct 10 SLDDVLSHFREAARTNRDLGTSFERLFATYLVTDPQYSDRLSDVWLWSEWPDRWS-VDVG 68
Query 62 IDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIIST 113
IDLVARER TG Y AIQCKF +P L K +IDSFFTASGK F +R+I+ST
Sbjct 69 IDLVARERGTGEYWAIQCKFLDPDTYLQKAEIDSFFTASGKKFSTKDGSRHFAHRLIVST 128
Query 114 TDRWGRNAEDALADQLVPVQRIGMAEIAESPIDW---DIAWPADDLQVNLTPAKRHELRP 170
TD+W ++AEDALA+Q+ PV R+ ++A SPIDW D+A P D L++ RHE RP
Sbjct 129 TDKWSKHAEDALANQVTPVSRLWFKDLANSPIDWAKLDLARP-DQLRL----VARHETRP 183
Query 171 HQQQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISL 230
HQ +AID+ GF DRGKLIMACGTGKTFTAL++AER G RIL L PSISL
Sbjct 184 HQDEAIDSSLAGFK-SVDRGKLIMACGTGKTFTALRLAERQTPKAG---RILFLAPSISL 239
Query 231 LSQTLREWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTD----ARVLLHEMAH 286
+SQTLREWTAQ++ AF VCSD+KV ED HD+ P TTD A +
Sbjct 240 VSQTLREWTAQAQEPFHAFVVCSDSKVGNDDEDLKTHDLAYPATTDHKALAAAAKLLSKN 299
Query 287 RRRAQGLTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHD 346
RR TVVF TYQS+ VA AQ+LG+ EFDLV+ DEAHRTTG+TLAGDD S FV+VH+
Sbjct 300 RR-----TVVFSTYQSIQVVADAQKLGLGEFDLVVSDEAHRTTGLTLAGDDASEFVKVHN 354
Query 347 GQYLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGL 406
+KA +RLYMTATPRI+ E+ K +A + A L SMDDE TFGPEF+RL FG+AV L
Sbjct 355 PALIKAKKRLYMTATPRIYGEASKTKAGEREAVLFSMDDEETFGPEFYRLGFGKAVSLDL 414
Query 407 LTDYKVMVLTVDQGVIAPRLQQELSGVSGELMLDD--------ASKIVGCWNGLAKR--- 455
L++YKV+++ V++ +A + + LDD A+KI+G W GL+K
Sbjct 415 LSEYKVLIVAVEEEAMAGL----ANAYNNAYKLDDKRALDIRFATKIIGAWKGLSKHGLV 470
Query 456 ----SGTGIVAGE--PPMRRAVAFAKDIKTSKQVAELFPKVVEAYREL 497
+G E PM+RAVAF++ I+ SKQ E+F ++V Y +
Sbjct 471 EVDETGDQAALQEDLQPMKRAVAFSRSIRDSKQTTEVFGQLVGLYHRM 518
>gi|334845256|gb|EGM23822.1| helicase domain-containing protein [Pseudomonas aeruginosa 152504]
Length=1626
Score = 456 bits (1173), Expect = 5e-126, Method: Compositional matrix adjust.
Identities = 252/529 (48%), Positives = 336/529 (64%), Gaps = 31/529 (5%)
Query 1 MGSVHDVIEAFRKAP-SNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRT- 58
M ++ ++ FR A + E+GT FE+L+ Y + T YD VW + DW + +G +
Sbjct 1 MSALSALLHTFRSASVTEREKGTYFEELICAYLRNEATYRDLYDKVWTYADWAKEQGLSG 60
Query 59 -DTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRW 117
D GIDLVAR + TG Y AIQCK Y + + K DIDSFFTASGK F++RVI++TT+ W
Sbjct 61 KDAGIDLVARTQGTGEYHAIQCKLYAEDYKVQKKDIDSFFTASGKAPFSHRVIVTTTNNW 120
Query 118 GRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAID 177
+AEDAL Q PV +I + + +S +DW P + + R +LR HQQ A++
Sbjct 121 SEHAEDALQGQQPPVSKIDLQALEDSQVDWAKYQPNQAVVLK----ARKQLRDHQQTALN 176
Query 178 AVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLRE 237
AV G +RGKLIMACGTGKTFT+LKIAE+ A G R+L LVPS+SLLSQTL E
Sbjct 177 AVVAGLKDA-ERGKLIMACGTGKTFTSLKIAEQQA---GKGKRVLFLVPSLSLLSQTLTE 232
Query 238 WTAQSELDVRAFAVCSDTKV--SRSAEDYHV----HDVPIPVTTDARVLLHEMAHRRRAQ 291
WT +S + +FAVCSD+ V R AED V H++ P TT A L EM R A+
Sbjct 233 WTQESATLLHSFAVCSDSDVGKKRKAEDDAVQVFTHELRYPATTKADRLASEMLKRHDAE 292
Query 292 GLTVVFCTYQSLPTVAKAQR-LGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYL 350
++VVF TY S+ +++AQ G+ FDLV+CDEAHRTTG T DDESNFVR+HDG Y+
Sbjct 293 HMSVVFSTYHSIDVISRAQADHGLPAFDLVICDEAHRTTGATFGDDDESNFVRIHDGDYI 352
Query 351 KAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDY 410
+AA+RLYMTATPRI+ +S K +A+ L SMDDE +G E ++F EAV+RGLLTDY
Sbjct 353 RAAKRLYMTATPRIYGDSAKIKAESGEVTLCSMDDEALYGKELFVINFSEAVQRGLLTDY 412
Query 411 KVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-GTGIVAGEPPMRR 469
KV+VLTV++ I+ RLQ L + +L +DDA+KIVGCW LAK+ ++ + PM+R
Sbjct 413 KVLVLTVEESTISRRLQDMLKDENNQLKVDDAAKIVGCWKALAKQGLHEQLIGDDEPMKR 472
Query 470 AVAFAKDIK----------TSKQVAELFPKVVEAYREL--VDDGPGLAC 506
AVAF + I +S +A +F VVEAY+E +D+ L C
Sbjct 473 AVAFCQVISPNYKGTKHKVSSINIASMFQAVVEAYQESEEIDEASRLIC 521
>gi|298370200|ref|ZP_06981516.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314]
gi|298281660|gb|EFI23149.1| helicase domain protein [Neisseria sp. oral taxon 014 str. F0314]
Length=1493
Score = 452 bits (1162), Expect = 7e-125, Method: Compositional matrix adjust.
Identities = 258/542 (48%), Positives = 338/542 (63%), Gaps = 51/542 (9%)
Query 1 MGSVHDVIEAFRKAPSNA------ERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPER 54
M ++ ++ +FR+ NA ++GT FE LMV YF+ +P + Y V + W +
Sbjct 1 MSALQTLLASFREQTQNAAYQGRRDQGTAFEHLMVAYFQTEPCYKELYQNVQPYGTWAAK 60
Query 55 R-------GRTDTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTN 107
G TD GIDLVA TG + AIQCK Y P HTL K DIDSFFTASGKT F+N
Sbjct 61 HLNELDLGGATDAGIDLVATTF-TGEHHAIQCKNYAPDHTLQKKDIDSFFTASGKTHFSN 119
Query 108 RVIISTTDRWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAK--R 165
R+I+STTD+W +NAEDAL Q +PV +I ++++ S IDW + P + R
Sbjct 120 RIIVSTTDKWSKNAEDALEGQHIPVSKITLSDLENSVIDW------TQYHIGEPPKRKNR 173
Query 166 HELRPHQQQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLV 225
LRPHQQ A+ AV GFA G RGKLIMACGTGKTFT+L+IAE +A G R+L LV
Sbjct 174 KSLRPHQQSALTAVSNGFARGETRGKLIMACGTGKTFTSLRIAEHLA---GKGKRVLFLV 230
Query 226 PSISLLSQTLREWTAQSELDVRAFAVCSDTKVSRSAED-----YHVHDVPIPVTTDARVL 280
PS+SLLSQTLREWT ++L +R FAVCSD++V + +D D+ P TT+A+ L
Sbjct 231 PSLSLLSQTLREWTQDADLPLRNFAVCSDSEVGKYKKDDDRTFVRPSDLNYPATTNAKSL 290
Query 281 LHEMAHRRRAQGLTVVFCTYQSLPTVAKAQ-RLGVDEFDLVMCDEAHRTTGVTLAGDDES 339
+ A+ +TVV+ TY S+ + +AQ + G+ EFDL++CDEAHRTTG T GDDES
Sbjct 291 YQAASVLHDAEHMTVVYSTYHSIDVIHQAQAQYGLPEFDLIICDEAHRTTGATFDGDDES 350
Query 340 NFVRVHDGQYLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFG 399
FVRVHD Y+K A+RLYMTATPRI+ + K AD + SMDDE +G EF L+F
Sbjct 351 AFVRVHDAGYIKGAKRLYMTATPRIYVDDAK-AAD--GVSVYSMDDETHYGKEFFVLTFS 407
Query 400 EAVERGLLTDYKVMVLTVDQGVIAPRLQQELSGVSG-ELMLDDASKIVGCWNGLAKRSGT 458
+AV + LL DYKV+VL +DQ + RLQ+ L +G EL +DDA+KIVGCW L+K +
Sbjct 408 QAVSQKLLVDYKVIVLAIDQAHVERRLQELLRDDTGSELKIDDAAKIVGCWKALSKYGLS 467
Query 459 GIV-AGEPPMRRAVAFAKDIK----------TSKQVAELFPKVVEAYR-----ELVDDGP 502
G A PMRRAVAF + I+ +SK +A+ F KVV+ Y+ E + D P
Sbjct 468 GEEGALYNPMRRAVAFCQVIEKEYKGSRHKVSSKLIADEFSKVVKKYQQKETEEWLKDNP 527
Query 503 GL 504
L
Sbjct 528 DL 529
>gi|260575999|ref|ZP_05843993.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
gi|259021698|gb|EEW25000.1| type III restriction protein res subunit [Rhodobacter sp. SW2]
Length=1629
Score = 451 bits (1159), Expect = 2e-124, Method: Compositional matrix adjust.
Identities = 240/514 (47%), Positives = 339/514 (66%), Gaps = 23/514 (4%)
Query 1 MGSVHDVIEAFRKAP-SNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGR-- 57
M ++ +++++R A + E+GT FE+L + +F DP +++Y+AVW W DW + GR
Sbjct 1 MTAIDRILQSYRDAAVTEREKGTYFERLALVFFMNDPVQSEEYEAVWTWSDWAKTNGRDG 60
Query 58 TDTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDR- 116
D GIDLVA+ R+ + AIQ KFY + K IDSF +ASGK F RV++ TT++
Sbjct 61 KDVGIDLVAKLRNEAGFAAIQAKFYAADARIQKIHIDSFISASGKEPFRRRVVLDTTEKE 120
Query 117 WGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAI 176
WG NAE+ + DQ++PV RIG+ ++ ES IDW I + + + + + L HQ+ A+
Sbjct 121 WGTNAEEMIRDQVIPVVRIGLTDLRESRIDWTIF----EARGEIVLSAKKSLLDHQKDAL 176
Query 177 DAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLR 236
V +G A DRGK+IMACGTGKTFT+LKIAE IA G R+L +VPS++L+SQT+R
Sbjct 177 ADVSKGLAAA-DRGKMIMACGTGKTFTSLKIAEAIA---GKGKRVLFMVPSLALMSQTVR 232
Query 237 EWTAQSELDVRAFAVCSDTKVSR---SAEDY---HVHDVPIPVTTDARVLLHEMAHRRRA 290
EWT +E +RAFAVCSD V + S +D +HD+ P TTD V + E A
Sbjct 233 EWTNDTETPIRAFAVCSDAHVGKRRTSTDDIAEIEIHDLAFPATTDP-VKVAEKAGEDDP 291
Query 291 QGLTVVFCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYL 350
+ +TV+F TYQS+ T+ +AQ G+ EFDL++CDEAHRTTG TL GD+ESNFV++H +
Sbjct 292 ERMTVIFSTYQSIVTLTRAQEAGLPEFDLIICDEAHRTTGATLDGDEESNFVKIHSNDNV 351
Query 351 KAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDY 410
KA +RLYMTATPRIF ++++ +AD+ AEL SMD+ FG FG AV+ GLLTDY
Sbjct 352 KARKRLYMTATPRIFGDNVRSKADEVGAELASMDNPALFGETLFYRGFGWAVQNGLLTDY 411
Query 411 KVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGTGIVAGEP-PMRR 469
KV+VL +D+G+++ +Q+ L EL+LDDA+KI+GC+ L K V+ +P PMRR
Sbjct 412 KVIVLAMDEGLVSAAVQKRLGDAGSELVLDDATKIIGCYKALTKIDLKADVSTDPHPMRR 471
Query 470 AVAFAKDIKTSKQVAELFPKVVEAY---RELVDD 500
A+AFAKDI++SK + + F VV+ Y L+DD
Sbjct 472 ALAFAKDIRSSKLIRDEFTAVVDEYLGQDSLIDD 505
>gi|317152124|ref|YP_004120172.1| type III restriction protein res subunit [Desulfovibrio aespoeensis
Aspo-2]
gi|316942375|gb|ADU61426.1| type III restriction protein res subunit [Desulfovibrio aespoeensis
Aspo-2]
Length=1613
Score = 449 bits (1155), Expect = 6e-124, Method: Compositional matrix adjust.
Identities = 241/521 (47%), Positives = 338/521 (65%), Gaps = 29/521 (5%)
Query 1 MGSVHDVIEAFRKAP-SNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRG--R 57
M ++ ++++A+R A S E+GT FE+L + Y + T Y VW + +W E +G +
Sbjct 1 MTALQNILDAYRNAAVSEREKGTYFEELTICYLRNEATYKDLYSDVWRYAEWAELQGLAK 60
Query 58 TDTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRW 117
DTGIDLVA+ R T + AIQCK Y HT+ K DIDSFFTASGK FTNR+I+ TT++W
Sbjct 61 RDTGIDLVAKTRGTDEFHAIQCKLYGEDHTIQKSDIDSFFTASGKKYFTNRIIVCTTNKW 120
Query 118 GRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAID 177
+ AED+L+DQ PV +I + ++ S IDW P + L P K LRPHQQ A
Sbjct 121 SKPAEDSLSDQFPPVNKIDLHDLENSQIDWAQYQPK--AEPVLKPKKV--LRPHQQDAYT 176
Query 178 AVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLRE 237
AV +G DRGKLIMACGTGKT T+LKIAE +A G R+L +VPS++LLSQTL E
Sbjct 177 AVEKGLKTA-DRGKLIMACGTGKTLTSLKIAEGLA---GKGKRVLFMVPSLALLSQTLTE 232
Query 238 WTAQSELDVRAFAVCSDTKV--SRSAEDYHV----HDVPIPVTTDARVLLHEMAHRRRAQ 291
WT +S + +FAVCSD+ V R +D V H++ P TT L EM R +Q
Sbjct 233 WTQESATPLHSFAVCSDSDVGKKRQTDDDSVQVFTHELRYPATTQPDKLAKEMVKRHDSQ 292
Query 292 GLTVVFCTYQSLPTVAKAQR-LGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYL 350
++VVF TY S+ +++AQ + +FDL++CDEAHRTTG T AGDDESNFV+VH+ +++
Sbjct 293 HMSVVFSTYHSIDVLSQAQYDHDLPQFDLIICDEAHRTTGATFAGDDESNFVKVHENRFI 352
Query 351 KAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDY 410
+AA+R+YMTATPRI+ ++ K A++ L SMDDE +G + + ++F EAV+RGLL DY
Sbjct 353 QAAKRIYMTATPRIYGDTAKATAERDDIVLCSMDDEERYGKDLYVINFSEAVKRGLLCDY 412
Query 411 KVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-GTGIVAGEPPMRR 469
KV+VL+VD+G ++ R+Q L +L +DDA+KI+GCW L+K+ T +V PM+R
Sbjct 413 KVLVLSVDEGHVSRRIQDLLKSGDNQLKVDDAAKIIGCWKALSKQDVTTDLVDDTNPMKR 472
Query 470 AVAFAKDIK----------TSKQVAELFPKVVEAYRELVDD 500
AVAF + I+ +SK +A +F +VV+ Y++ D
Sbjct 473 AVAFCQVIEIARNARKHKVSSKNIAAMFEEVVQEYQKTEQD 513
>gi|334196917|gb|AEG70102.1| helicase domain protein [Ralstonia solanacearum Po82]
Length=1663
Score = 446 bits (1146), Expect = 6e-123, Method: Compositional matrix adjust.
Identities = 243/516 (48%), Positives = 331/516 (65%), Gaps = 28/516 (5%)
Query 1 MGSVHDVIEAFRKAP-SNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRG--R 57
M ++ +++ FR A + E+GT FE+L+V Y + T Y VW + +W + +G +
Sbjct 1 MTALEQLLDTFRTAAVTEREKGTYFEELIVCYLRNEATYRDLYSDVWTYAEWADLQGLDK 60
Query 58 TDTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRW 117
D GIDLVA+ + TG Y AIQCK + P H + K DIDSFFTASGK FT R+I++TT+ W
Sbjct 61 RDAGIDLVAKTQGTGEYHAIQCKLFAPDHKVQKSDIDSFFTASGKKPFTRRIIVATTNHW 120
Query 118 GRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAID 177
+AEDAL DQ PV +I + + ES IDW P V AK+ +LR HQ+ A++
Sbjct 121 SDHAEDALYDQQPPVSKIDLTALEESQIDWSQYQPKAPTPV--IKAKK-QLRDHQKSALN 177
Query 178 AVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLRE 237
G A G DRGKLIMACGTGKTFT+LKIAE +A G R+L LVPS+SLLSQTL E
Sbjct 178 GAIHGLA-GADRGKLIMACGTGKTFTSLKIAETLA---GAGKRVLFLVPSLSLLSQTLTE 233
Query 238 WTAQSELDVRAFAVCSDTKVSRS------AEDYHVHDVPIPVTTDARVLLHEMAHRRRAQ 291
WT +SE + +FAVCSD+ V + A VH++ P TTD+ L EMA R +
Sbjct 234 WTQESETPLHSFAVCSDSDVGKKRKKDDDAVQTFVHELRYPATTDSARLAAEMAKRHDST 293
Query 292 GLTVVFCTYQSLPTVAKAQR-LGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYL 350
++VVF TY S+ ++ AQ+ G+ FDL++CDEAHRTTG T DDES FVRVHD +Y+
Sbjct 294 HMSVVFSTYHSIDVISCAQKEFGLTAFDLIVCDEAHRTTGATFGDDDESTFVRVHDAKYI 353
Query 351 KAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDY 410
++A+RLYMTATPRI+ ++ K A++ + L SMDDE +G E ++F EAV+R LL DY
Sbjct 354 RSAKRLYMTATPRIYGDTAKASAERDNVALCSMDDESLYGKELFVITFSEAVKRQLLVDY 413
Query 411 KVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSGT-GIVAGEPPMRR 469
KV+VL V++ + RLQ L + +L +DDA++IVGCW L+K+ T +V M+R
Sbjct 414 KVIVLAVEETHVNRRLQDLLRDDNNQLKVDDAARIVGCWKALSKQDLTEDLVGDNAAMKR 473
Query 470 AVAFAKDIK----------TSKQVAELFPKVVEAYR 495
AVAF + I+ +SKQ+A +F VVEAY+
Sbjct 474 AVAFCQVIEVSKGAKTHKVSSKQIAGMFQAVVEAYQ 509
>gi|108763664|ref|YP_630054.1| putative restriction/modification enzyme [Myxococcus xanthus
DK 1622]
gi|108467544|gb|ABF92729.1| putative restriction/modification enzyme [Myxococcus xanthus
DK 1622]
Length=1656
Score = 445 bits (1144), Expect = 1e-122, Method: Compositional matrix adjust.
Identities = 250/538 (47%), Positives = 344/538 (64%), Gaps = 35/538 (6%)
Query 1 MGSVHDVIEAFRK-APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRG--R 57
M ++ D++E FR A +N E+GT FE+L V + + +P + Y +V + W ER +
Sbjct 1 MSALLDLLEHFRTTAATNREQGTYFEELTVAFLKNEPAYRELYRSVEPYAAWAERHSLDK 60
Query 58 TDTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRW 117
D GIDLVA E + AIQCK Y P + + KGDIDSFFTASGK FT+R+I+STTD W
Sbjct 61 RDAGIDLVA-ESFSDEIHAIQCKLYAPDYRVQKGDIDSFFTASGKKPFTHRIIVSTTDLW 119
Query 118 GRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWP--ADDLQVNLTPAKRHELRPHQQQA 175
+AE+AL DQ PV +I +A + +S IDW P A L+ TP PHQ+ A
Sbjct 120 SEHAEEALRDQNTPVTKIDLAALEKSAIDWSRFAPRKAPVLRKKKTPL------PHQKTA 173
Query 176 IDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTL 235
+ AV G ++RGKLIMACGTGKTFT+LKIAE +A G R+L LVPS++LLSQTL
Sbjct 174 LKAVLEGLN-ASERGKLIMACGTGKTFTSLKIAEHLA---GEGKRVLFLVPSLALLSQTL 229
Query 236 REWTAQSELDVRAFAVCSDTKVS--RSAED----YHVHDVPIPVTTDARVLLHEMAHRRR 289
EWT +SE +++FAVCSD+ V R +D VH++ P TT+A L M R
Sbjct 230 TEWTQESEARIQSFAVCSDSDVGKRRKKDDDTVQTFVHELQYPATTNAARLAAAMKKRHD 289
Query 290 AQGLTVVFCTYQSLPTVAKAQR-LGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQ 348
A+ ++VV+ TY S+ + +AQ+ G+ EFDL++CDEAHRTTG G++ES+FVRVHDG
Sbjct 290 AEHMSVVYATYHSVEVIHQAQKKQGLPEFDLIICDEAHRTTGARFDGEEESHFVRVHDGD 349
Query 349 YLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLT 408
Y++ +RLYMTATPRIF ++ K A++ + L SMDDE +GP H L+F EAV+RGLL
Sbjct 350 YIRGKKRLYMTATPRIFGDAAKATAERDNVALCSMDDERLYGPALHVLTFSEAVKRGLLV 409
Query 409 DYKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-GTGIVAGEPPM 467
DYKV+VL +++ ++ R+Q L + EL +DDA+KIVGCW L+K+ GI PM
Sbjct 410 DYKVIVLAIEESHVSRRIQSLLKDANNELRVDDAAKIVGCWKALSKQGLQEGITDDHAPM 469
Query 468 RRAVAFAKDIKT----------SKQVAELFPKVVEAYRELVDDGPGLACLNSSRRIQA 515
+RAVAF + I+ SK +A++F VVEAY++ + G A +++ R QA
Sbjct 470 KRAVAFCQVIERPTGAKVHKVGSKNIADMFQAVVEAYQQ-SEPADGNAATSAALRCQA 526
>gi|120609278|ref|YP_968956.1| type III restriction enzyme, res subunit [Acidovorax citrulli
AAC00-1]
gi|120587742|gb|ABM31182.1| type III restriction enzyme, res subunit [Acidovorax citrulli
AAC00-1]
Length=1609
Score = 444 bits (1141), Expect = 3e-122, Method: Compositional matrix adjust.
Identities = 248/512 (49%), Positives = 330/512 (65%), Gaps = 55/512 (10%)
Query 14 APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRTDTGIDLVARERDTGN 73
A SN +GT+FE+L+ Y DP A + VW W +WP+R TD GIDLVARER TG
Sbjct 14 AHSNRGKGTQFEKLIANYLLTDPQYADRLADVWLWEEWPDRWS-TDVGIDLVARERGTGE 72
Query 74 YTAIQCKFYEPTHTLAKGDIDSFFTASGKT--------GFTNRVIISTTDRWGRNAEDAL 125
Y AIQCKF++P H L K DIDSFFTASGK F +R+++STTD+W ++A+DAL
Sbjct 73 YWAIQCKFFDPDHYLQKTDIDSFFTASGKKFATKEGERSFAHRIVVSTTDKWSKHADDAL 132
Query 126 ADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLT------PAKRHELRPHQQQAIDAV 179
A+Q++ V R+ E+AESPIDW Q +L+ K+ + R HQQ+AI AV
Sbjct 133 ANQVISVSRLWFKELAESPIDWS--------QFSLSNIKDIKLKKKKQPREHQQEAIAAV 184
Query 180 FRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLREWT 239
GF DRGKLIMACGTGKTFTAL++ E A +G R+L L PSISL++Q+LREWT
Sbjct 185 AAGFTEA-DRGKLIMACGTGKTFTALRMMENEVAADG---RVLFLAPSISLVAQSLREWT 240
Query 240 AQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVVFCT 299
A+S AF VCSD+KV + ED + HD+ P TTDA+ L A + + TVVF T
Sbjct 241 AESLEPFHAFVVCSDSKVGKDEEDLNTHDLAYPATTDAKRLSKAAAMLPKGR-RTVVFST 299
Query 300 YQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRLYMT 359
YQS+ VA AQ+ G+ EFDL++CDEAHRTTG+TL +D S FV+VH+ +KA +RLYMT
Sbjct 300 YQSIQVVADAQKGGLGEFDLIVCDEAHRTTGLTLPSEDPSEFVKVHNNAIVKAKKRLYMT 359
Query 360 ATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLTVDQ 419
ATPRIF + K +A++ A L SMDD T+G EF+RL FG+AV R LLT+YKV+++ V +
Sbjct 360 ATPRIFADKSKTKANEADAVLFSMDDVETYGQEFYRLGFGKAVTRDLLTEYKVLIVAVKE 419
Query 420 GVIAPRLQQELSGVSGELMLDD--------ASKIVGCWNGLAKRSGTGIVAGE------- 464
+A + + + +DD A+KI+G W GL+K+ G+VA +
Sbjct 420 AEMA----KLANNYNNAYKIDDKKAIDINFATKIIGSWKGLSKK---GLVAVDDDGQEDA 472
Query 465 -----PPMRRAVAFAKDIKTSKQVAELFPKVV 491
PMRRAVAF+K IK SKQ+ ++F ++V
Sbjct 473 LNEDAAPMRRAVAFSKSIKDSKQMQDVFGQLV 504
>gi|315655210|ref|ZP_07908111.1| helicase [Mobiluncus curtisii ATCC 51333]
gi|315490465|gb|EFU80089.1| helicase [Mobiluncus curtisii ATCC 51333]
Length=1724
Score = 442 bits (1137), Expect = 7e-122, Method: Compositional matrix adjust.
Identities = 248/513 (49%), Positives = 322/513 (63%), Gaps = 31/513 (6%)
Query 6 DVIEAFRK-APSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPE--RRGRTDTGI 62
+++E +R+ + S +G FEQL++ Y D M+ Q+ V+ W DWP + G DTGI
Sbjct 54 ELLEHYREFSDSERAKGNLFEQLILSYLRNDSQMSHQFGEVYLWRDWPGGGKAGNPDTGI 113
Query 63 DLVARERD----TGNYT------AIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIIS 112
DLVA + + G T AIQCKFYE HT+ K +DSF +ASGK F R+ +
Sbjct 114 DLVAIDVEDMPANGVVTTDTPAVAIQCKFYEAGHTIQKAQLDSFLSASGKEPFKRRIFVE 173
Query 113 TTD-RWGRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPH 171
TT WG NAEDA+ +Q PV RIG+ ++ S IDW + + Q R LR H
Sbjct 174 TTGVPWGSNAEDAIRNQTKPVCRIGLTDLRNSDIDWS-TYSFEKPQQAPKTKSRKTLRDH 232
Query 172 QQQAIDAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLL 231
Q AI+ VF GF N RG L+MACGTGKTFT+LKIAE++ + GG+ARI+ +VPS++L+
Sbjct 233 QVDAINDVFEGFESHN-RGILVMACGTGKTFTSLKIAEQLTNELGGNARIMFMVPSLALM 291
Query 232 SQTLREWTAQSELDVRAFAVCSDTKVSRSAE------DYHVHDVPIPVTTDARVLLHEMA 285
SQTL EW A+ ++ A++VCSD KV+R + D D+ P TTDA L +
Sbjct 292 SQTLGEWAAEVQVPFSAWSVCSDAKVNRKRQQRDDLADIATVDLKTPPTTDAAKLAQSLT 351
Query 286 HRRRAQGLTVVFCTYQSLPTVAKAQRLGVD---EFDLVMCDEAHRTTGVTLAGDDESNFV 342
A+GL VVFCTYQS+ V +AQ L +FDL++CDEAHRTTGV L+ +DES F
Sbjct 352 SHLDAEGLQVVFCTYQSIDIVHQAQELAGKHWRDFDLIICDEAHRTTGVKLSDEDESAFT 411
Query 343 RVHDGQYLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAV 402
RVHD Y++A +RLYMTATPRIF ++K+ A + A L SMDDE +GP FHRL FG AV
Sbjct 412 RVHDNAYVRAEKRLYMTATPRIFQPNVKNIAKERDAVLTSMDDETIYGPVFHRLGFGRAV 471
Query 403 ERGLLTDYKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRSG--TGI 460
GLLTDYKV+VL V + I QQ S V GEL + + +K+VGCWN L+KR +
Sbjct 472 SLGLLTDYKVVVLAVPEDQITRIYQQ--SAVDGELTIPETAKLVGCWNALSKRKNRFADM 529
Query 461 VAGE--PPMRRAVAFAKDIKTSKQVAELFPKVV 491
G PMRRAVAFAKDIKTSKQ+ FP +V
Sbjct 530 QYGNDTEPMRRAVAFAKDIKTSKQITSEFPILV 562
>gi|28867279|ref|NP_789898.1| helicase domain-containing protein [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28850513|gb|AAO53593.1| helicase domain protein [Pseudomonas syringae pv. tomato str.
DC3000]
Length=1636
Score = 441 bits (1134), Expect = 1e-121, Method: Compositional matrix adjust.
Identities = 244/531 (46%), Positives = 334/531 (63%), Gaps = 35/531 (6%)
Query 1 MGSVHDVIEAFRKAP-SNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRGRT- 58
M ++ +++ +R A + E+GT FE+L+ Y + T Y+ VW + +W + +G +
Sbjct 1 MSALSSLLDTYRSAAVTEREKGTYFEELICGYLRNEATYRDLYEKVWTYAEWAKEQGLSG 60
Query 59 -DTGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRW 117
D GIDLVAR + TG Y AIQCK Y + + K DIDSFFTASGK FT+R+I++TT+ W
Sbjct 61 KDAGIDLVARTQGTGEYHAIQCKLYAEDYKVQKKDIDSFFTASGKAPFTHRIIVATTNNW 120
Query 118 GRNAEDALADQLVPVQRIGMAEIAESPIDWDIAWPADDLQVNLTPAKRHELRPHQQQAID 177
+AEDAL Q + +I + + ES IDW P + + R +LR HQQ A++
Sbjct 121 SEHAEDALQGQHQTINKIDLQALEESQIDWAKYQPHQAVVLK----ARKQLRDHQQTALN 176
Query 178 AVFRGFAVGND--RGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTL 235
A G ND RGKLIMACGTGKTFT+LKIAER+A G R+L LVPS+SLLSQTL
Sbjct 177 ATAAGL---NDAERGKLIMACGTGKTFTSLKIAERLA---GKGKRVLFLVPSLSLLSQTL 230
Query 236 REWTAQSELDVRAFAVCSDTKV--SRSAEDYHV----HDVPIPVTTDARVLLHEMAHRRR 289
EWT +SE + +FAVCSD+ V R A++ V H++ P TT A L EM R
Sbjct 231 TEWTQESETPLHSFAVCSDSDVGKKRKADEDTVQVFTHELRYPATTKADRLAAEMLKRHD 290
Query 290 AQGLTVVFCTYQSLPTVAKAQR-LGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQ 348
A+ ++VVF TY S+ +++AQ + FDLV+CDEAHRTTG T DDES FVR+HD
Sbjct 291 AEHMSVVFSTYHSIDVISRAQHEYDLAAFDLVICDEAHRTTGATFDDDDESTFVRIHDVD 350
Query 349 YLKAARRLYMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLT 408
Y++A +RLYMTATPRI+ ++ K +A+ L SMDDE +G E ++F EAV+RGLLT
Sbjct 351 YIRAIKRLYMTATPRIYGDNAKIKAESGEVTLCSMDDEALYGKELFVINFSEAVQRGLLT 410
Query 409 DYKVMVLTVDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKRS-GTGIVAGEPPM 467
DYKV+VLTV++ ++ RLQ+ L +L +DDA+KIVGCW LAK+ +V + PM
Sbjct 411 DYKVLVLTVEESIVNRRLQELLKDEDNQLKVDDAAKIVGCWKALAKQGLAENLVGDDQPM 470
Query 468 RRAVAFAKDIK----------TSKQVAELFPKVVEAYREL--VDDGPGLAC 506
+RAVAF + I +S +A +F VVEAY+E +D+ + C
Sbjct 471 KRAVAFCQVISPSYKGTKHKVSSINIASMFQSVVEAYQESENIDEASRIIC 521
>gi|46580580|ref|YP_011388.1| adenine specific DNA methyltransferase [Desulfovibrio vulgaris
str. Hildenborough]
gi|46449999|gb|AAS96648.1| adenine specific DNA methyltransferase, putative [Desulfovibrio
vulgaris str. Hildenborough]
gi|311234319|gb|ADP87173.1| type III restriction protein res subunit [Desulfovibrio vulgaris
RCH1]
Length=1595
Score = 441 bits (1133), Expect = 2e-121, Method: Compositional matrix adjust.
Identities = 236/498 (48%), Positives = 318/498 (64%), Gaps = 23/498 (4%)
Query 4 VHDVIEAFRKAPSNAERGTKFEQLMVRYFELDPTMAQQYDAVWWWIDWPERRG----RTD 59
+H +++ +R+ ++G FE+L+ Y + DP + VW W DWPER R D
Sbjct 2 LHQILQKYREQEYQRDKGDAFERLIRAYLKTDPQYQALFSDVWLWKDWPEREALGYKRPD 61
Query 60 TGIDLVARERDTGNYTAIQCKFYEPTHTLAKGDIDSFFTASGKTGFTNRVIISTTDRWGR 119
TGIDLVAR RD +Y AIQCKFYE + +++GD+ +FFT SGK GF+ R+I++T +
Sbjct 62 TGIDLVARFRDGESYCAIQCKFYE--NAISQGDLGTFFTLSGKGGFSQRLIVATAP-LSK 118
Query 120 NAEDALADQLVPVQRIGMAEIAESPIDWD---IAWPADDLQVNLTPAKRHELRPHQQQAI 176
NA DA+ Q +PV + + ++A +PIDW IA P L P + + RPHQ +A+
Sbjct 119 NAADAIEHQTIPVALLTLEDLASAPIDWTQCTIAAPD-----TLKPIEHKKPRPHQNEAL 173
Query 177 DAVFRGFAVGNDRGKLIMACGTGKTFTALKIAERIAADNGGSARILLLVPSISLLSQTLR 236
+AV +GF+ +DRGKLIMACGTGKT+ +L IAE + A G +L +VPSI+LLSQTLR
Sbjct 174 EAVRKGFS-AHDRGKLIMACGTGKTYASLLIAEDMVAPGG---TVLFMVPSIALLSQTLR 229
Query 237 EWTAQSELDVRAFAVCSDTKVSRSAEDYHVHDVPIPVTTDARVLLHEMAHRRRAQGLTVV 296
WTA S +R FAVCSD+KVSR ED + ++ P TT+A L + LTVV
Sbjct 230 AWTADSTKPLRCFAVCSDSKVSRDDEDMRIAEMAYPATTNATKLAAAFNATQDTSRLTVV 289
Query 297 FCTYQSLPTVAKAQRLGVDEFDLVMCDEAHRTTGVTLAGDDESNFVRVHDGQYLKAARRL 356
F TYQS+ V +AQ+ FDL++CDEAHRT G T G+D S FVR+HD Y++ +RL
Sbjct 290 FATYQSIAVVHEAQQQAGFTFDLIVCDEAHRTAGYTPKGEDHSAFVRIHDADYIRGQKRL 349
Query 357 YMTATPRIFTESIKDRADQHSAELVSMDDELTFGPEFHRLSFGEAVERGLLTDYKVMVLT 416
YMTATPR++ E K +A + + SMDDE TFG EFHRL F EAV R LL+DYKV+++
Sbjct 350 YMTATPRLYAEQSKSKAKERDIAVFSMDDEATFGKEFHRLRFDEAVRRDLLSDYKVLIIA 409
Query 417 VDQGVIAPRLQQELSGVSGELMLDDASKIVGCWNGLAKR---SGTGIVAGEP-PMRRAVA 472
V++ + LQ + S EL LDDA KIVGCWNGL KR T +P PMR A+A
Sbjct 410 VEEKHVTLALQSRIEDNSDELDLDDAVKIVGCWNGLGKRLAEDDTADKHSDPLPMRTALA 469
Query 473 FAKDIKTSKQVAELFPKV 490
FA +IK SK++A F ++
Sbjct 470 FAGNIKNSKRLAGEFVRI 487
Lambda K H
0.320 0.134 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 1122945618116
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40