BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2028c
Length=279
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycob... 550 8e-155
gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511... 544 4e-153
gi|306780049|ref|ZP_07418386.1| hypothetical protein TMBG_00569 ... 373 2e-101
gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycoba... 238 6e-61
gi|145224428|ref|YP_001135106.1| UspA domain-containing protein ... 209 4e-52
gi|315444761|ref|YP_004077640.1| universal stress protein UspA-l... 200 2e-49
gi|120403537|ref|YP_953366.1| UspA domain-containing protein [My... 194 1e-47
gi|118469548|ref|YP_889491.1| universal stress protein family pr... 179 5e-43
gi|126436929|ref|YP_001072620.1| UspA domain-containing protein ... 167 1e-39
gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [My... 167 2e-39
gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_0486... 166 3e-39
gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [... 163 2e-38
gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Myc... 158 1e-36
gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 ... 156 4e-36
gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycob... 155 7e-36
gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691... 155 8e-36
gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [... 155 9e-36
gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycoba... 154 1e-35
gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycob... 153 3e-35
gi|120402393|ref|YP_952222.1| UspA domain-containing protein [My... 151 1e-34
gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [... 146 3e-33
gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycoba... 144 1e-32
gi|126433721|ref|YP_001069412.1| UspA domain-containing protein ... 136 3e-30
gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 ... 134 1e-29
gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_1951... 134 2e-29
gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [My... 133 2e-29
gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_1510... 132 5e-29
gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 ... 131 1e-28
gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [... 130 3e-28
gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513... 129 4e-28
gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [My... 123 3e-26
gi|126433737|ref|YP_001069428.1| UspA domain-containing protein ... 122 6e-26
gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [... 121 1e-25
gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycoba... 120 2e-25
gi|120402398|ref|YP_952227.1| UspA domain-containing protein [My... 117 2e-24
gi|336459367|gb|EGO38310.1| universal stress family protein [Myc... 116 3e-24
gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Myco... 115 8e-24
gi|339295968|gb|AEJ48079.1| hypothetical protein CCDC5079_2889 [... 114 1e-23
gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_174... 114 2e-23
gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_1953... 111 1e-22
gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 ... 105 5e-21
gi|145225571|ref|YP_001136249.1| UspA domain-containing protein ... 105 6e-21
gi|315445920|ref|YP_004078799.1| universal stress protein UspA-l... 104 1e-20
gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycoba... 104 1e-20
gi|145225567|ref|YP_001136245.1| UspA domain-containing protein ... 103 3e-20
gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 ... 102 5e-20
gi|315445924|ref|YP_004078803.1| universal stress family protein... 102 7e-20
gi|312141769|ref|YP_004009105.1| universal stress family protein... 100 2e-19
gi|325672969|ref|ZP_08152663.1| universal stress protein [Rhodoc... 98.6 8e-19
gi|111017048|ref|YP_700020.1| universal stress protein [Rhodococ... 89.7 5e-16
>gi|15609165|ref|NP_216544.1| hypothetical protein Rv2028c [Mycobacterium tuberculosis H37Rv]
gi|15841515|ref|NP_336552.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793210|ref|NP_855703.1| hypothetical protein Mb2053c [Mycobacterium bovis AF2122/97]
75 more sequence titles
Length=279
Score = 550 bits (1417), Expect = 8e-155, Method: Compositional matrix adjust.
Identities = 279/279 (100%), Positives = 279/279 (100%), Gaps = 0/279 (0%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK
Sbjct 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE
Sbjct 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS
Sbjct 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH
Sbjct 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
Query 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL 279
MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL
Sbjct 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL 279
>gi|340627039|ref|YP_004745491.1| hypothetical protein MCAN_20511 [Mycobacterium canettii CIPT
140010059]
gi|340005229|emb|CCC44383.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=279
Score = 544 bits (1402), Expect = 4e-153, Method: Compositional matrix adjust.
Identities = 276/279 (99%), Positives = 277/279 (99%), Gaps = 0/279 (0%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK
Sbjct 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE
Sbjct 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
R GSTAAALALSAQCPVAIVR HRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS
Sbjct 121 RAGSTAAALALSAQCPVAIVRSHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH
Sbjct 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
Query 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL 279
MVV+SASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL
Sbjct 241 MVVVSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL 279
>gi|306780049|ref|ZP_07418386.1| hypothetical protein TMBG_00569 [Mycobacterium tuberculosis SUMu002]
gi|308327086|gb|EFP15937.1| hypothetical protein TMBG_00569 [Mycobacterium tuberculosis SUMu002]
Length=189
Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 189/189 (100%), Positives = 189/189 (100%), Gaps = 0/189 (0%)
Query 91 ERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVRPHRVPIGRD 150
ERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVRPHRVPIGRD
Sbjct 1 ERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVRPHRVPIGRD 60
Query 151 AAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQSGVGDTGDDVRASLDRWLARW 210
AAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQSGVGDTGDDVRASLDRWLARW
Sbjct 61 AAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQSGVGDTGDDVRASLDRWLARW 120
Query 211 QPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQEHVEQLVGAPGNAVLQEAGCT 270
QPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQEHVEQLVGAPGNAVLQEAGCT
Sbjct 121 QPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQEHVEQLVGAPGNAVLQEAGCT 180
Query 271 LLVVGQQYL 279
LLVVGQQYL
Sbjct 181 LLVVGQQYL 189
>gi|296169093|ref|ZP_06850752.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896213|gb|EFG75875.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=272
Score = 238 bits (608), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 143/276 (52%), Positives = 187/276 (68%), Gaps = 17/276 (6%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
SIV G+DGSK A++AALWAVDEA SR +PLRLL+A +P+ AAAE AV
Sbjct 9 SIVAGVDGSKAAIRAALWAVDEAVSRGVPLRLLHATDPEG-----------GEAAAELAV 57
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
R+A TA+ A +PV+VE EI V SLIR+SA+AA+VCVGA+G+ HF+P RVGSTAAA
Sbjct 58 RHAVTAIRATGKPVRVETEIAPGPAVGSLIRSSASAAMVCVGAVGLRHFQPGRVGSTAAA 117
Query 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
LA+SA CPVAIVR +VE DGS D VLL A + EA LRD+ ++ + R
Sbjct 118 LAISAHCPVAIVRGGDGRRDHPEGKTIVEIDGSPD-SVLLAASVEEALLRDAALQAIVSR 176
Query 189 QSG---VGDTGDDVR--ASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVV 243
++G GDT D R A LDR LARW+ R+P +RV+S AVH LLDY AG V +V+
Sbjct 177 RAGPAERGDTEADRRALADLDRRLARWKRRHPRLRVESVAVHAGLLDYPAGHRGPVGLVI 236
Query 244 LSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL 279
+ A D+ HV +LVG G++V+Q+A C+LL+V +++L
Sbjct 237 VGAHDRRHVAELVGPAGSSVMQDANCSLLIVNRRHL 272
>gi|145224428|ref|YP_001135106.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145216914|gb|ABP46318.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=274
Score = 209 bits (531), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 123/266 (47%), Positives = 167/266 (63%), Gaps = 6/266 (2%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENA 67
P IVVGIDGS AV AALWAVD+A DIPLRL+Y I+ D+ AR+LA AE A
Sbjct 8 PCIVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADNEDAVDPHDQARQLATAEMA 67
Query 68 VRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAA 127
VRYA TA+E+ D+PVK+EVEI + RPV +L+ A+ +A L+C+GA G+ H R+GSTA
Sbjct 68 VRYALTALESTDQPVKIEVEILRGRPVQTLLEAARSAVLLCLGARGLKHSTQGRIGSTAG 127
Query 128 ALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTC 187
A++ SA CPVA+VR HR P R +V+E ++ G +L + EAR R +PVRV+T
Sbjct 128 AVSTSAHCPVAVVRAHR-PHRRPDRAVVIEITDNAGGGAVLERGLDEARRRGAPVRVLTS 186
Query 188 RQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSAS 247
+S + DV +R LA W+ RYPD+ + + L DYLA G + ++V +
Sbjct 187 ARSQL-----DVTGRWERRLAEWRRRYPDLDISAVRARDGLFDYLAAHGDGLQLLVAGRN 241
Query 248 DQEHVEQLVGAPGNAVLQEAGCTLLV 273
V LVG PGNA L++ C++LV
Sbjct 242 RPGGVAPLVGTPGNAALRDTDCSILV 267
>gi|315444761|ref|YP_004077640.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315263064|gb|ADT99805.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=274
Score = 200 bits (509), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 124/266 (47%), Positives = 169/266 (64%), Gaps = 6/266 (2%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENA 67
P IVVGIDGS AV AALWAVD+A DIPLRL+Y I+ D+ G AR+LA AE A
Sbjct 8 PCIVVGIDGSPAAVDAALWAVDQAVDLDIPLRLVYVIDADEEGAVDPHDQARQLATAEMA 67
Query 68 VRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAA 127
VRYA TA+E+ ++PVK+EVEI + RPV +L+ A+ +A L+C+GA G+ H R+GSTAA
Sbjct 68 VRYALTALESTEQPVKIEVEILRGRPVQTLLEAARSAVLICLGARGLKHSTQGRIGSTAA 127
Query 128 ALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTC 187
A++ +A CPVA+VR HR P R +V+E + D G +L + EAR R +PVRV+T
Sbjct 128 AVSATAHCPVAVVRAHR-PHRRPDRAVVIEITDNVDGGAVLERGLDEARRRGAPVRVLTS 186
Query 188 RQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSAS 247
+ + DV A +R LA W+ RYPD+ + + L DYLA G + ++V +
Sbjct 187 ARPQL-----DVTARWERRLAEWRHRYPDLDISAVRARDGLFDYLAAHGDGLQLLVTGRN 241
Query 248 DQEHVEQLVGAPGNAVLQEAGCTLLV 273
V LVG PGNA L++ C++LV
Sbjct 242 RPGGVAPLVGTPGNAALRDTDCSILV 267
>gi|120403537|ref|YP_953366.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119956355|gb|ABM13360.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=271
Score = 194 bits (493), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 119/264 (46%), Positives = 162/264 (62%), Gaps = 7/264 (2%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
IVVGIDGS V AALWA+++A D+PLRL+Y ++ + G AR +A AE A+R
Sbjct 8 IVVGIDGSPAGVDAALWAIEQAVDHDMPLRLVYVVDAGEHGTVDPHDQARSIATAEVALR 67
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
YA AVE+ +RPVK+EVEI Q RPV +L+ A+ +AA++C+GA G+ H R+GSTA AL
Sbjct 68 YALAAVESVERPVKIEVEILQGRPVQTLLEAARSAAMLCIGARGLKHSTQGRIGSTAVAL 127
Query 130 ALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQ 189
A SA CPVAIVR HR P RD A ++ DG+ ++ +AEA+ R P RV+ +
Sbjct 128 ATSALCPVAIVRSHR-PHRRDRAVVIEFTDGA-----VMQRGLAEAKRRRVPARVLIPAR 181
Query 190 SGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQ 249
+ D A+ +R LA WQ YPDV + + + LDYLA G V +VV +
Sbjct 182 TH-PDARSHASAAWERRLAEWQRSYPDVEIVPVSERIDTLDYLAAHGDDVQLVVAGRNRP 240
Query 250 EHVEQLVGAPGNAVLQEAGCTLLV 273
V LVG PGNA L++ C++LV
Sbjct 241 GGVAALVGPPGNAALRDTDCSILV 264
>gi|118469548|ref|YP_889491.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
gi|118170835|gb|ABK71731.1| universal stress protein family protein [Mycobacterium smegmatis
str. MC2 155]
Length=280
Score = 179 bits (453), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 112/278 (41%), Positives = 166/278 (60%), Gaps = 17/278 (6%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
++VGIDGS+PAV AA+WAV EA SR +PLRL+YA+ PDD G A H +AR LA AE A+R
Sbjct 7 VIVGIDGSQPAVDAAIWAVKEALSRGVPLRLIYAVHPDDNG-ADHENSARALATAEVAIR 65
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A AVE+ ++PV++E+E+ Q++P+ +LI AS L+CVGA G+ +GS A+A+
Sbjct 66 QACVAVESTEQPVQIELEVVQDKPIEALIAASQNTPLLCVGASGLTQAGRGGIGSVASAV 125
Query 130 ALSAQCPVAIV-RPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
SAQCPVA+V P + GR I+VE DG L + EARLRD+P+ V+T
Sbjct 126 LRSAQCPVAVVATPGK---GR---RILVEFDGRPSASTALQTGVDEARLRDAPLSVMTTW 179
Query 189 Q--------SGVGDTGDDV-RASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSV 239
Q V + + + ++ LDR + R++ RYP++ ++ HG DY+A ++V
Sbjct 180 QHRHRELYEEKVAEERNRLAQSQLDRRMTRYRKRYPELDLELITDHGNTADYVAANPQTV 239
Query 240 HMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQ 277
++V+ A + L +AGC+LL +Q
Sbjct 240 QLIVVGAERFNRAGDVTDPAALGALVDAGCSLLTCDRQ 277
>gi|126436929|ref|YP_001072620.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126236729|gb|ABO00130.1| UspA domain protein [Mycobacterium sp. JLS]
Length=261
Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 124/278 (45%), Positives = 166/278 (60%), Gaps = 19/278 (6%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M + H +VVGIDGS+ A+ AALWAVD A RD PLRLLYAIEP D AA AAR+
Sbjct 1 MTERHP---VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAA---AARE 54
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
LA A+ AVR FTA++A +RPV++EVEI Q+ V +L AS +AALVCVGA+G+ P
Sbjct 55 LAIADLAVRDVFTAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPG 114
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
R+GSTAA LA SA CPVA+VR + +++ E + SD G +L + EA LR
Sbjct 115 RIGSTAATLARSAHCPVALVRHN------TDGYVLAEVEDWSDSGAVLRHAVDEALLRRV 168
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
P+RV+T + RA R L W+ R+PD+ + ++D+LAG V
Sbjct 169 PLRVLT-------PGSESARAPAARTLDGWRRRHPDLEIDLFTSDDGVVDFLAGEPGRVQ 221
Query 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQY 278
+VV+ A + G +VL+EAGCTLL +Q+
Sbjct 222 LVVVGAERARGPGEFTDPRGRSVLREAGCTLLTCHRQH 259
>gi|108801091|ref|YP_641288.1| hypothetical protein Mmcs_4127 [Mycobacterium sp. MCS]
gi|119870232|ref|YP_940184.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108771510|gb|ABG10232.1| UspA [Mycobacterium sp. MCS]
gi|119696321|gb|ABL93394.1| UspA domain protein [Mycobacterium sp. KMS]
Length=261
Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 124/278 (45%), Positives = 166/278 (60%), Gaps = 19/278 (6%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M + H +VVGIDGS+ A+ AALWAVD A RD PLRLLYAIEP D AA AAR+
Sbjct 1 MTERHP---VVVGIDGSRAALDAALWAVDAAVGRDTPLRLLYAIEPADHDVAA---AARE 54
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
LA A+ AVR FTA++A +RPV++EVEI Q+ V +L AS +AALVCVGA+G+ P
Sbjct 55 LAIADLAVRDVFTAIQATERPVRIEVEIVQDSAVRALASASRSAALVCVGAVGLQDAIPG 114
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
R+GSTAA LA SA CPVA+VR + +++ E + SD G +L + EA LR
Sbjct 115 RIGSTAATLARSAHCPVALVRHN------TDGYVLAEVEDWSDSGAVLRHAVDEALLRRV 168
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
P+RV+T + RA R L W+ R+PD+ + ++D+LAG V
Sbjct 169 PLRVLT-------PGSESARAPAARTLDGWRRRHPDLEIDLLTSDDGVVDFLAGEPGRVQ 221
Query 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQY 278
+VV+ A + G +VL+EAGCTLL +Q+
Sbjct 222 LVVVGAERARGPGEFTDPRGRSVLREAGCTLLTCHRQH 259
>gi|240168619|ref|ZP_04747278.1| hypothetical protein MkanA1_04860 [Mycobacterium kansasii ATCC
12478]
Length=266
Score = 166 bits (420), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 114/273 (42%), Positives = 153/273 (57%), Gaps = 24/273 (8%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENA 67
P++VVGIDGSK A QAALWA+DEA SRDIPLRL+Y I+P +P + +A A A
Sbjct 7 PAVVVGIDGSKAATQAALWAIDEAVSRDIPLRLVYVIDPLEPSGGGGRDGRQGMAHA--A 64
Query 68 VRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAA 127
+ AVEA PVKVE E+ + RP+T L+ S +A +VCVG+IG++H R GS AA
Sbjct 65 LFDVCRAVEATGHPVKVETEVLRGRPLTKLMEESRSAVMVCVGSIGLNHARRGE-GSVAA 123
Query 128 ALALSAQCPVAIVR--PHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVV 185
LA SA CPVA+++ P VP+ + + +V E + G +L EARLR +R +
Sbjct 124 TLAGSALCPVAVIQVPPGGVPVPK-VSTVVAEVNN----GSVLRHAFEEARLRGVALRAL 178
Query 186 TCRQSGV-GDTGDDVR---ASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHM 241
+ R GDTGD R A L R LARW YPDV+V+S + G Y+A + +
Sbjct 179 SARMPDTAGDTGDGNRLAQAQLSRRLARWTRLYPDVKVESTIIRGHACRYIAANAKPDQL 238
Query 242 VVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
V H Q + AGC++L V
Sbjct 239 YV----TDSHAAQACN------VYSAGCSVLTV 261
>gi|169630983|ref|YP_001704632.1| hypothetical protein MAB_3904 [Mycobacterium abscessus ATCC 19977]
gi|169242950|emb|CAM63978.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=285
Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 112/292 (39%), Positives = 166/292 (57%), Gaps = 21/292 (7%)
Query 1 MNQSHKP-PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAI-EPDDPGYAAHGAAA 58
MN+ P P+++VGIDGS+ AV+AALWAVDEA R++PLRL++ + + P ++
Sbjct 1 MNEIRTPGPAVLVGIDGSRSAVRAALWAVDEALHRELPLRLVHVTPQTEFPEFSD----- 55
Query 59 RKLAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFR 118
+ + A AVR+AF + A +PVKVE EI R L+ AS +A ++CVGAIG+
Sbjct 56 -ERSPAGTAVRHAFRQIGATHKPVKVEAEIRHGRVADVLLDASRSAVMLCVGAIGISGAD 114
Query 119 PERVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLR 178
+VGSTAA + S +CPVA++R + R + +VVE D S + L EARLR
Sbjct 115 TRKVGSTAAEVLRSVRCPVAVIRDDPSSL-RGTSAVVVEIDESHESVTPLELAAHEARLR 173
Query 179 DSPVRVVTCRQSGVGDTGDDVRA-----------SLDRWLARWQPRYPDVRVQSAAVHGE 227
+P+RV+ R + +G V ++R LA + RYPD+ +++ G
Sbjct 174 AAPLRVL-LRHRPISLSGQRVATLTRVDRRVAAVHVERRLAPLRVRYPDLDIRALDPVGG 232
Query 228 LLDYLAGLGRSVHMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQYL 279
LDYL G +V +VV+ A D HV++LVG G VL C++L+ +Q L
Sbjct 233 TLDYLERHGHTVQLVVVGAGDAAHVQELVGPNGCGVLGRTHCSVLIAERQRL 284
>gi|118617915|ref|YP_906247.1| hypothetical protein MUL_2424 [Mycobacterium ulcerans Agy99]
gi|118570025|gb|ABL04776.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=264
Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 111/270 (42%), Positives = 146/270 (55%), Gaps = 20/270 (7%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENA 67
P+IVVGIDGS+ + AA+WAVDEA SRDIP+RL+Y I DP A G + ++A A
Sbjct 7 PAIVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYII---DPAQAPAGDRDGRQSSARAA 63
Query 68 VRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAA 127
+ AVEA +PVK+E EI RP+T L+ S A +VCVG+IG++H R GS A
Sbjct 64 LFDVQRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGLNHARRGE-GSVAG 122
Query 128 ALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTC 187
LA SA CPVA+++ P G A V E D G +L EARLR+ P+R ++
Sbjct 123 TLAGSALCPVAVIQS---PAGAAGAPKVGEVVAEVDNGSVLRHAFEEARLRNVPLRAISS 179
Query 188 R---QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVL 244
R G D A L R L RW YPDVRV+SA + G Y+A + + V
Sbjct 180 RVATDHGSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAKPDELYVT 239
Query 245 SASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ H Q+ G AGC++L V
Sbjct 240 DS----HAAQVCSVYG------AGCSVLTV 259
>gi|183981530|ref|YP_001849821.1| hypothetical protein MMAR_1515 [Mycobacterium marinum M]
gi|183174856|gb|ACC39966.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=264
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 111/270 (42%), Positives = 146/270 (55%), Gaps = 20/270 (7%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENA 67
P+IVVGIDGS+ + AA+WAVDEA SRDIP+RL+Y I DP A + +AA A
Sbjct 7 PAIVVGIDGSRASTHAAVWAVDEAVSRDIPVRLVYII---DPAQAPASDRDGRQSAARAA 63
Query 68 VRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAA 127
+ AVEA +PVK+E EI RP+T L+ S A +VCVG+IG++H R GS A
Sbjct 64 LFDVQRAVEATGQPVKIETEILWGRPLTKLLEESRTAVMVCVGSIGLNHARRGE-GSVAG 122
Query 128 ALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTC 187
LA SA CPVA+++ P G A V E D G +L EARLR+ P+R ++
Sbjct 123 TLAGSALCPVAVIQS---PAGAAGAPKVGEVVAEVDNGSVLRHAFEEARLRNVPLRAISS 179
Query 188 RQS---GVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVL 244
R + G D A L R L RW YPDVRV+SA + G Y+A + + V
Sbjct 180 RVATGHGSEDGNRLATAQLTRRLTRWTRLYPDVRVESAIIAGHACRYMAANAKPDELYVT 239
Query 245 SASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ H Q+ G AGC++L V
Sbjct 240 DS----HAAQVCSVYG------AGCSVLTV 259
>gi|15609761|ref|NP_217140.1| hypothetical protein Rv2624c [Mycobacterium tuberculosis H37Rv]
gi|15842164|ref|NP_337201.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31793810|ref|NP_856303.1| hypothetical protein Mb2657c [Mycobacterium bovis AF2122/97]
44 more sequence titles
Length=272
Score = 155 bits (392), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 98/266 (37%), Positives = 144/266 (55%), Gaps = 6/266 (2%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
+I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + R LA AE ++
Sbjct 11 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYD---RDLAHAERSL 67
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
R A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ + +GSTA
Sbjct 68 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 127
Query 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
LA A CPVA++R D WIVV + D +L EA+LR +P+ + R
Sbjct 128 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 187
Query 189 QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASD 248
+ + D +R + W R+PDVRV H + +LA V + V+ +
Sbjct 188 PEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGE 244
Query 249 QEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ +LVG G+ V + A C++LVV
Sbjct 245 AGQLARLVGPSGHPVFRHAECSVLVV 270
>gi|340627644|ref|YP_004746096.1| hypothetical protein MCAN_26691 [Mycobacterium canettii CIPT
140010059]
gi|340005834|emb|CCC45000.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=272
Score = 155 bits (391), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/265 (37%), Positives = 143/265 (54%), Gaps = 6/265 (2%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + R LA AE ++R
Sbjct 12 IIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYD---RDLAHAERSLR 68
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ + +GSTA L
Sbjct 69 EAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRGAEMICVGSVGIGRYASSILGSTATEL 128
Query 130 ALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQ 189
A A CPVA++R D WIVV + D +L EA+LR +P+ + R
Sbjct 129 AEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGRP 188
Query 190 SGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQ 249
+ + D +R + W R+PDVRV H + +LA V + V+ +
Sbjct 189 EELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGEA 245
Query 250 EHVEQLVGAPGNAVLQEAGCTLLVV 274
+ +LVG G+ V + A C++LVV
Sbjct 246 GQLARLVGPSGHPVFRHAECSVLVV 270
>gi|254232738|ref|ZP_04926065.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
gi|308232192|ref|ZP_07415239.2| hypothetical protein TMAG_02433 [Mycobacterium tuberculosis SUMu001]
gi|308369803|ref|ZP_07419140.2| hypothetical protein TMBG_02762 [Mycobacterium tuberculosis SUMu002]
26 more sequence titles
Length=264
Score = 155 bits (391), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 98/266 (37%), Positives = 144/266 (55%), Gaps = 6/266 (2%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
+I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + R LA AE ++
Sbjct 3 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYD---RDLAHAERSL 59
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
R A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ + +GSTA
Sbjct 60 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 119
Query 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
LA A CPVA++R D WIVV + D +L EA+LR +P+ + R
Sbjct 120 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 179
Query 189 QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASD 248
+ + D +R + W R+PDVRV H + +LA V + V+ +
Sbjct 180 PEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADHDERVQLAVIGGGE 236
Query 249 QEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ +LVG G+ V + A C++LVV
Sbjct 237 AGQLARLVGPSGHPVFRHAECSVLVV 262
>gi|296169213|ref|ZP_06850866.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896111|gb|EFG75778.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=278
Score = 154 bits (389), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/236 (46%), Positives = 137/236 (59%), Gaps = 10/236 (4%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ SH P +VVG+DGSK A QAALWA+DEA SRDIP+RL+Y ++P D A A +
Sbjct 14 MSNSHPAPGVVVGVDGSKAAEQAALWAIDEAVSRDIPMRLVYVVDPRD--AATPSACEAR 71
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
LAAA A+ A AV+AA PVKVE +I RP+T L+ S +AA++C+G+IG+ H R
Sbjct 72 LAAARTALADAHRAVDAAGAPVKVETDIVCGRPLTKLLEESRSAAMMCIGSIGLKHAR-H 130
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
S A ALA SA CPVA++ P R AA V D GV+L EARLR +
Sbjct 131 GATSVATALARSAGCPVAVIHQ---PARRSAAPKVDSVLAEVDNGVVLRHAFEEARLRGA 187
Query 181 PVRVV-TCR---QSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYL 232
+R + CR Q + RA L R LARW YPDVR + V G + YL
Sbjct 188 GLRALWVCRGEDQRDADEGTSSARAQLSRRLARWTRLYPDVRAEPVIVRGSVQQYL 243
>gi|15610270|ref|NP_217650.1| hypothetical protein Rv3134c [Mycobacterium tuberculosis H37Rv]
gi|15842707|ref|NP_337744.1| universal stress protein [Mycobacterium tuberculosis CDC1551]
gi|31794310|ref|NP_856803.1| hypothetical protein Mb3158c [Mycobacterium bovis AF2122/97]
79 more sequence titles
Length=268
Score = 153 bits (386), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 110/265 (42%), Positives = 144/265 (55%), Gaps = 21/265 (7%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
++VVGIDGS+ A AALWAVDEA +RDIPLRL+Y I+P A G +AA A+
Sbjct 9 AVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQ---SAARAAL 65
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
A VEA +PVK+E E+ RP+T L++ S +AA++CVG++G+ H R R GS AA
Sbjct 66 HDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRR-GSVAAT 124
Query 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
LA SA CPVA++ P + V A+ D GV+L EARLR P+R V
Sbjct 125 LAGSALCPVAVIHPSPAEPATTSQVSAVVAE--VDNGVVLRHAFEEARLRGVPLRAVAVH 182
Query 189 QSGVGDTGDDVRAS-------LDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHM 241
+ +T DDV L R LA W YP+VRV A G +LA + +
Sbjct 183 AA---ETPDDVEQGSRLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQL 239
Query 242 VVLSASDQEHVEQLVGA--PGNAVL 264
V +D +L GA PG AVL
Sbjct 240 FV---ADSHSAHELCGAYQPGCAVL 261
>gi|120402393|ref|YP_952222.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955211|gb|ABM12216.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=280
Score = 151 bits (381), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 110/271 (41%), Positives = 151/271 (56%), Gaps = 16/271 (5%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENA 67
P++VVGIDGS+ A AA+WA+DEAASRDIPLRL++A+ P D AH A LA A
Sbjct 5 PAVVVGIDGSRFATAAAIWAIDEAASRDIPLRLVHAVTPTD---GAH-LDADDLARAGRV 60
Query 68 VRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAA 127
V+ A AVEA +PVKVE +IT R L S AAL+CVG+ G+ H V TAA
Sbjct 61 VQSAVAAVEANGKPVKVETQITPGRAAHVLRSQSRDAALLCVGSSGLTHGGSGPVDRTAA 120
Query 128 ALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTC 187
A+AL+A CPVAI+ H W+VVE + S ++L + EA LR + +RVV
Sbjct 121 AVALTASCPVAII--HSAGTNSKPGWVVVEVNDSPAGELVLRTGVEEALLRGAALRVVAT 178
Query 188 RQSGVGDTGDD---------VRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRS 238
S D DD V+A +R LA W+ R+P++ V + A G +L+YLA
Sbjct 179 WPSRYPDIHDDGAVANKNRSVKAQWERRLAPWRLRHPELEVHAVATPGSILNYLARHRDP 238
Query 239 VHMVVLSASDQEHVEQLVGAPGNAVLQEAGC 269
+ + ++ V +L+ G L++ GC
Sbjct 239 IGLAIVPHERAAGVAELLAPRGRDPLRD-GC 268
>gi|289448276|ref|ZP_06438020.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
gi|289421234|gb|EFD18435.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A]
Length=277
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 98/279 (36%), Positives = 144/279 (52%), Gaps = 19/279 (6%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
+I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + R LA AE ++
Sbjct 3 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYD---RDLAHAERSL 59
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHF----------- 117
R A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ +
Sbjct 60 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 119
Query 118 --RPERVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEA 175
+GSTA LA A CPVA++R D WIVV + D +L EA
Sbjct 120 LAEKALLGSTATELAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREA 179
Query 176 RLRDSPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGL 235
+LR +P+ + R + + D +R + W R+PDVRV H + +LA
Sbjct 180 KLRQAPILALGGRPEELREIPD---GEFERRVQDWHHRHPDVRVYPITTHTGIARFLADH 236
Query 236 GRSVHMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
V + V+ + + +LVG G+ V + A C++LVV
Sbjct 237 DERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVV 275
>gi|296169076|ref|ZP_06850736.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896267|gb|EFG75928.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=263
Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/265 (36%), Positives = 142/265 (54%), Gaps = 6/265 (2%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
I+VGIDGS AV AALW VDEA SR +PLRL+ ++P + + R +A AE ++
Sbjct 4 ILVGIDGSSAAVAAALWGVDEAISRGVPLRLISVVKP---AHESPEDYERDVAHAEKSLL 60
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A +AVEA + V VE + + L+ AS A ++CVG +G+ + VGSTA L
Sbjct 61 EARSAVEATGKAVTVETTVPRGPAGAVLLEASPDAEMICVGCVGIGRYARSIVGSTATEL 120
Query 130 ALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQ 189
A+CPVA+VR D WIVV + ++ AEA+LR++P+ V+ R
Sbjct 121 VEKARCPVAVVRTGSDRPPPDINWIVVRMTDAPGNDAVVKCAAAEAKLRNAPMLVLGGRP 180
Query 190 SGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQ 249
+ + D + +R +A+W+ RYP+VRV + YL+ V + V+ +
Sbjct 181 EELTEHAD---GAFERRVAQWRERYPEVRVYPITTKQAIAGYLSANDERVQLAVIGGDEA 237
Query 250 EHVEQLVGAPGNAVLQEAGCTLLVV 274
+ QLVG G+ + + C++LVV
Sbjct 238 NQLAQLVGPQGHPLFRHPDCSVLVV 262
>gi|126433721|ref|YP_001069412.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233521|gb|ABN96921.1| UspA domain protein [Mycobacterium sp. JLS]
Length=279
Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 96/260 (37%), Positives = 142/260 (55%), Gaps = 8/260 (3%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ + + S++VGIDGS A+ AA WAV+EA SR +PL L+ + P + R+
Sbjct 1 MSDAAQFSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEY---QRE 57
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
L A+ ++R A AVEA RPVKV+ +I +P LI S A LVCVG++G+ +
Sbjct 58 LHHADVSLRAARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERS 117
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
+GSTA LA A CPVA++RP D WIV +G+ D ++ M EARLR
Sbjct 118 ILGSTATDLAEQAHCPVAVIRPSHSGGPSDIHWIVAATNGTPDDEAVIEGAMREARLR-R 176
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
++ RQ GD GD+ LDR +A W+ R+ DV + A HG++ ++ +
Sbjct 177 LPVLLLGRQPRHGDGGDE----LDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIE 232
Query 241 MVVLSASDQEHVEQLVGAPG 260
M V+ A+D + ++G G
Sbjct 233 MAVVGAADAGELAGILGRHG 252
>gi|183982090|ref|YP_001850381.1| hypothetical protein MMAR_2076 [Mycobacterium marinum M]
gi|183175416|gb|ACC40526.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=264
Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/265 (34%), Positives = 136/265 (52%), Gaps = 6/265 (2%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
++VGIDGS + A LWA EA S +PLRL+ ++ +++ LA AE ++R
Sbjct 4 VIVGIDGSPAGITAVLWATAEAVSAGVPLRLISVLKT---AHSSPEEYEHDLAHAETSLR 60
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A +A+EA PVKVE + + L+ AS A LVCVG++G+ + +GSTA L
Sbjct 61 AAQSAIEATAAPVKVETDTPRGPAGAVLVEASRDAELVCVGSVGIGRYARAILGSTATEL 120
Query 130 ALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQ 189
A A CPVA++R + D WIVV + D ++ EARLR +P+ + R
Sbjct 121 AEKAHCPVAVIRSNSDQPPPDINWIVVRVTDAPDNDAVIEYAAHEARLRQAPILALGGRP 180
Query 190 SGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQ 249
+ D D +R + +W + DV V + +LA V + V+ A +
Sbjct 181 EELTDAAD---GEFERRVQQWGQHHTDVHVYPITTQAGIARFLADHDERVQLAVIGADEA 237
Query 250 EHVEQLVGAPGNAVLQEAGCTLLVV 274
+ V +LVG G+ + + A C++LVV
Sbjct 238 DQVARLVGPSGHPIFRHAECSVLVV 262
>gi|240171512|ref|ZP_04750171.1| hypothetical protein MkanA1_19516 [Mycobacterium kansasii ATCC
12478]
Length=269
Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/271 (37%), Positives = 148/271 (55%), Gaps = 5/271 (1%)
Query 4 SHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAA 63
+H IVVGIDGS A+ AA WA+ EA SRDIPLRL++AI P A G + +
Sbjct 2 NHPQSRIVVGIDGSDAAINAAKWAITEAISRDIPLRLIHAI-PRGADVPA-GDESLDVEY 59
Query 64 AENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVG 123
AE A+ A A+ A D VKVE EI P +LI S +AA+VCVG++G+ + +G
Sbjct 60 AEMALHGAAAALHAMDEAVKVETEIVHGSPGGTLIDESRSAAMVCVGSVGIGRVARKLLG 119
Query 124 STAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVR 183
STA A+A A+CP A++R + D+AWI V + S +L EA LR +P+
Sbjct 120 STAEAVARKARCPTAVIRTGHNDVVPDSAWIAVVVEDSPANDAVLEQGFREAHLRGAPIL 179
Query 184 VVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVV 243
+ + G+G+ + L+R L RW +Y D+ VQ AA + ++L ++ + V
Sbjct 180 AMGVWRWGLGEIRYE---QLNRRLDRWVGQYRDLHVQPAAARHGVAEFLGRTEEAIQLAV 236
Query 244 LSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ + D V ++VG V + G ++LVV
Sbjct 237 VGSDDAGDVARMVGPVTFHVPRRDGHSVLVV 267
>gi|108798060|ref|YP_638257.1| hypothetical protein Mmcs_1087 [Mycobacterium sp. MCS]
gi|119867156|ref|YP_937108.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768479|gb|ABG07201.1| UspA [Mycobacterium sp. MCS]
gi|119693245|gb|ABL90318.1| UspA domain protein [Mycobacterium sp. KMS]
Length=279
Score = 133 bits (335), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/262 (36%), Positives = 143/262 (55%), Gaps = 8/262 (3%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ + + S++VGIDGS A+ AA WAV+EA SR +PL L+ + P + R+
Sbjct 1 MSDAAQFSSVLVGIDGSDAAIGAATWAVEEAVSRSVPLVLIGVMPSIHPSAEEY---QRE 57
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
L A+ ++R A AVEA RPVKV+ +I +P LI S A LVCVG++G+ +
Sbjct 58 LHHADVSLRAARAAVEATGRPVKVDTDIATGQPAAVLIARSRDAELVCVGSVGIGRYERS 117
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
+GSTA LA A CPVA++RP D WIV +G+ + ++ M EARLR
Sbjct 118 ILGSTATDLAEQAHCPVAVIRPSHSGGPSDIHWIVAATNGTPEDEAVIEGAMREARLR-R 176
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
++ RQ G+ GD+ LDR +A W+ R+ DV + A HG++ ++ +
Sbjct 177 LPVLLLGRQPRHGNGGDE----LDRTVALWRKRFDDVHIYPVAFHGDVAHFVREHDEPIE 232
Query 241 MVVLSASDQEHVEQLVGAPGNA 262
M V+ A+D + ++G G +
Sbjct 233 MAVVGAADAGELAGILGRHGRS 254
>gi|240170640|ref|ZP_04749299.1| hypothetical protein MkanA1_15100 [Mycobacterium kansasii ATCC
12478]
Length=264
Score = 132 bits (333), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 91/265 (35%), Positives = 134/265 (51%), Gaps = 6/265 (2%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
+VVG+DGS A+ AALW DEA R +PLRL+ I+ P + R L AE ++R
Sbjct 4 VVVGVDGSPAAITAALWGADEAHGRAVPLRLISVIKTTHPSPEDY---ERDLRHAETSLR 60
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A AV A + VKVE + + L+ AS A LVCVG+ G+ + +GSTA L
Sbjct 61 AAQVAVAATGKQVKVETDTPRGPAGAVLVEASRDAELVCVGSTGMRRYARSILGSTATEL 120
Query 130 ALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQ 189
A A CPVA++R D WIVV + D ++ EA LR +P+ + R
Sbjct 121 AEKAHCPVAVIRSDADQPPLDINWIVVRMTDAPDNDAVVEHAAREAMLRQAPILALGGRP 180
Query 190 SGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQ 249
+ +T D +R + W R+P VRV + +LA V + V+ A++
Sbjct 181 EELTETPD---GDFERRVHEWHQRHPGVRVYPVTTKAGIARFLAEHRERVLLAVIGAAEA 237
Query 250 EHVEQLVGAPGNAVLQEAGCTLLVV 274
+ + +LVG G+ V + C++LVV
Sbjct 238 DQLVRLVGPSGHPVFRHPECSVLVV 262
>gi|183983461|ref|YP_001851752.1| hypothetical protein MMAR_3478 [Mycobacterium marinum M]
gi|183176787|gb|ACC41897.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=271
Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 98/274 (36%), Positives = 148/274 (55%), Gaps = 5/274 (1%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ P +V G+DGS+ A+ AA WAV EAASR IPLRL++A+ + + + AA
Sbjct 1 MSHPQAPRCVVAGVDGSQAAINAARWAVPEAASRGIPLRLVHAVP--ERAASTNDEAALD 58
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
+ A+ A+ A A+ A + PV+VEV+I + +L+ S AA+VCVG++G+ +
Sbjct 59 VEYAQAALHAASAALHAIEVPVEVEVDIVRGPAEAALVSESLTAAMVCVGSVGIGRVARK 118
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
+GSTA A+ A CP AI+R D +WI V D S +L EA+LR +
Sbjct 119 LLGSTAEAVTQRAHCPAAIIRTDPDTELSDTSWIAVVVDDSPGNDAVLEHGFREAQLRGA 178
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
P+ + + G+G+ + L R L RW RY DV VQ AA D+LA +
Sbjct 179 PILAMGVWRWGLGEIAYE---QLHRRLDRWVSRYRDVHVQPAAARHGAADFLAKTEEPIQ 235
Query 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ V+ + D V ++VGA + Q +G ++LVV
Sbjct 236 LAVVGSDDAGDVARMVGAVSRRLPQRSGHSVLVV 269
>gi|289758755|ref|ZP_06518133.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289714319|gb|EFD78331.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=240
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 83/211 (40%), Positives = 118/211 (56%), Gaps = 6/211 (2%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
+I+VGIDGS A+ AALW VDEA SR +PLRL+ I+P P + R LA AE ++
Sbjct 3 TIIVGIDGSHAAITAALWGVDEAISRAVPLRLVSVIKPTHPSPDDYD---RDLAHAERSL 59
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
R A +AVEAA + VK+E +I + L+ AS A ++CVG++G+ + +GSTA
Sbjct 60 REAQSAVEAAGKLVKIETDIPRGPAGPVLVEASRDAEMICVGSVGIGRYASSILGSTATE 119
Query 129 LALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
LA A CPVA++R D WIVV + D +L EA+LR +P+ + R
Sbjct 120 LAEKAHCPVAVMRSKVDQPASDINWIVVRMTDAPDNEAVLEYAAREAKLRQAPILALGGR 179
Query 189 QSGVGDTGDDVRASLDRWLARWQPRYPDVRV 219
+ + D +R + W R+PDVRV
Sbjct 180 PEELREIPD---GEFERRVQDWHHRHPDVRV 207
>gi|254552224|ref|ZP_05142671.1| hypothetical protein Mtube_17513 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=333
Score = 129 bits (325), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/250 (39%), Positives = 128/250 (52%), Gaps = 25/250 (10%)
Query 26 WAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVRYAFTAVEAADRPVKVE 85
W +DEA +RDIPLRL+Y I+P A G +AA A+ A VEA +PVK+E
Sbjct 91 WNLDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQ---SAARAALHDASRKVEATGQPVKIE 147
Query 86 VEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVRPH-- 143
E+ RP+T L++ S +AA++CVG++G+ H R R GS AA LA SA CPVA++ P
Sbjct 148 TEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGRR-GSVAATLAGSALCPVAVIHPSPA 206
Query 144 RVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQSGVGDTGDDVRAS- 202
+ +V E D GV+L EARLR P+R V +T DDV
Sbjct 207 EPATTSQVSAVVAEVDN----GVVLRHAFEEARLRGVPLRAVAVH---AAETPDDVEQGS 259
Query 203 ------LDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQEHVEQLV 256
L R LA W YP+VRV A G +LA + + V +D +L
Sbjct 260 RLAHVHLSRRLAHWTRLYPEVRVDRAIAGGSACRHLAANAKPGQLFV---ADSHSAHELC 316
Query 257 GA--PGNAVL 264
GA PG AVL
Sbjct 317 GAYQPGCAVL 326
>gi|108798077|ref|YP_638274.1| hypothetical protein Mmcs_1105 [Mycobacterium sp. MCS]
gi|119867173|ref|YP_937125.1| UspA domain-containing protein [Mycobacterium sp. KMS]
gi|108768496|gb|ABG07218.1| UspA [Mycobacterium sp. MCS]
gi|119693262|gb|ABL90335.1| UspA domain protein [Mycobacterium sp. KMS]
Length=299
Score = 123 bits (309), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/276 (36%), Positives = 147/276 (54%), Gaps = 8/276 (2%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ + +VVG+DGS+ A+ A WAVDEA R +PLRL++A + +
Sbjct 29 MDTTELARPVVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLE 88
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
AE A+R A A ++A R VKVE EI P + L+ S A++VC+G++G+
Sbjct 89 REYAETALRAASAAAQSAGREVKVETEILWGSPDSELVTESHGASMVCIGSVGIGAIANV 148
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDI-GVLLGAVMAEARLRD 179
+GSTA +++ AQC VA++R P + + V DG+ D GV++GA + EARLR
Sbjct 149 LLGSTAVTVSMQAQCCVAVLRRGARPAPNGS--VAVATDGTPDSDGVVIGA-LDEARLRG 205
Query 180 SPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLA-GLGRS 238
PV VV R+ D LDR A+ RYPDVR + A G ++ YL
Sbjct 206 CPVVVVGVRRWESHAPSYD---ELDRRTAQLADRYPDVRTKVVATDGGIVRYLTHQRDDD 262
Query 239 VHMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ MVV+ ++D + V +VG ++ G ++LVV
Sbjct 263 IEMVVVGSADADAVADMVGPHDTLFGRDKGHSVLVV 298
>gi|126433737|ref|YP_001069428.1| UspA domain-containing protein [Mycobacterium sp. JLS]
gi|126233537|gb|ABN96937.1| UspA domain protein [Mycobacterium sp. JLS]
Length=299
Score = 122 bits (306), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 98/276 (36%), Positives = 147/276 (54%), Gaps = 8/276 (2%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ + +VVG+DGS+ A+ A WAVDEA R +PLRL++A + +
Sbjct 29 MDTTELARPVVVGVDGSQAALDAVRWAVDEAVGRSVPLRLVHATGVTPRVDQSDDEFRLE 88
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
AE A+R A A ++A R VK+E EI P + L+ S A++VCVG++G+
Sbjct 89 REYAETALRAASAAAQSAGREVKLETEILWGSPDSELVTESHGASMVCVGSVGIGAIANV 148
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDI-GVLLGAVMAEARLRD 179
+GSTA +++ AQC VA++R P + + V DG+ D GV++GA + EARLR
Sbjct 149 LLGSTAVTVSMQAQCCVAVLRRGARPAPNGS--VAVATDGTPDSDGVVIGA-LDEARLRG 205
Query 180 SPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLA-GLGRS 238
PV VV R+ D LDR A+ RYPDVR + A G ++ YL
Sbjct 206 CPVVVVGVRRWESHAPSYD---ELDRRTAQLADRYPDVRTKVVATDGGIVRYLTHQRDDD 262
Query 239 VHMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ MVV+ ++D + V +VG ++ G ++LVV
Sbjct 263 IEMVVVGSADADAVADMVGPHDTLFGRDKGHSVLVV 298
>gi|289570795|ref|ZP_06451022.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289544549|gb|EFD48197.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length=235
Score = 121 bits (303), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 80/239 (34%), Positives = 123/239 (52%), Gaps = 6/239 (2%)
Query 36 IPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVRYAFTAVEAADRPVKVEVEITQERPVT 95
+PLRL+ I+P P + R LA AE ++R A +AVEAA + VK+E +I +
Sbjct 1 MPLRLVSVIKPTHPSPDDYD---RDLAHAERSLREAQSAVEAAGKLVKIETDIPRGPAGP 57
Query 96 SLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIV 155
L+ AS A ++CVG++G+ + +GSTA LA A CPVA++R D WIV
Sbjct 58 VLVEASRDAEMICVGSVGIGRYASSILGSTATELAEKAHCPVAVMRSKVDQPASDINWIV 117
Query 156 VEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYP 215
V + D +L EA+LR +P+ + R + + D +R + W R+P
Sbjct 118 VRMTDAPDNEAVLEYAAREAKLRQAPILALGGRPEELREIPD---GEFERRVQDWHHRHP 174
Query 216 DVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
DVRV H + +LA V + V+ + + +LVG G+ V + A C++LVV
Sbjct 175 DVRVYPITTHTGIARFLADHDERVQLAVIGGGEAGQLARLVGPSGHPVFRHAECSVLVV 233
>gi|296169099|ref|ZP_06850758.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896219|gb|EFG75881.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=280
Score = 120 bits (301), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 94/277 (34%), Positives = 143/277 (52%), Gaps = 5/277 (1%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
MN IVVGIDGS A+ AA WA EA SR++PLRL++AI G A G +
Sbjct 1 MNNPQSSQRIVVGIDGSDAAINAAKWAATEAVSRNVPLRLIHAIPERRAGEA--GDDSLD 58
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
+ A++++R A A++A PVKVE ++ + +LI S AA+VCVG++G
Sbjct 59 VEYAQSSLRAADAALQATGMPVKVECDVVRGSSEGALIDESRHAAMVCVGSVGTGWVARR 118
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
+GSTA +A A CPVA++R R +D ++ V S+ +L EARLR++
Sbjct 119 VLGSTADTVARRAHCPVAVIRSSRDAAEQDGGYVAVTVGESATNDAVLEHGFREARLREA 178
Query 181 PVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVH 240
P+ + + G+G+ L+ L W R+ +V VQ AA ++L V
Sbjct 179 PILALGIWRWGLGEI---PYRQLEHRLGPWVSRHREVHVQPAAARRGAAEFLTHTQEPVQ 235
Query 241 MVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVVGQQ 277
+ V+ + D + V ++VG GC++LVV Q
Sbjct 236 LAVVGSEDADKVARMVGPITTHPGGHKGCSVLVVRDQ 272
>gi|120402398|ref|YP_952227.1| UspA domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119955216|gb|ABM12221.1| UspA domain protein [Mycobacterium vanbaalenii PYR-1]
Length=266
Score = 117 bits (293), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 91/265 (35%), Positives = 135/265 (51%), Gaps = 10/265 (3%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
++ GIDGS A+ AALWAVDEAA R P+ L+Y +P D A + R+ +
Sbjct 10 VIAGIDGSATALAAALWAVDEAAGRGAPVHLVYTTKPTDRHAAEYAEDVRR---GHECLH 66
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A +AVEA +PV VE + +LI S A +VCVG++G+ + +GSTAA +
Sbjct 67 EARSAVEATGKPVTVETTVVDGPAAQALISLSEQAQMVCVGSVGIGRYARSILGSTAAEV 126
Query 130 ALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQ 189
A A CPVA++RPH WIVV ++ + EA LR PV +
Sbjct 127 AERAHCPVAVIRPHPHAGEHGFHWIVVAVTEQPQNAEVVEHALREAALRHVPVLAL---- 182
Query 190 SGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSASDQ 249
G G T D A L+R L W+ RYPDV + A ++ +L V + V+ + +
Sbjct 183 -GDGRTEDSADA-LERHLRSWRERYPDVHIYPIAGSADVTHFLKKHDEPVMLTVIGSDEA 240
Query 250 EHVEQLVGAPGNAVLQEAGCTLLVV 274
V +++G G+++L+ + LVV
Sbjct 241 GEVAKIIGH-GHSLLRRGTSSALVV 264
>gi|336459367|gb|EGO38310.1| universal stress family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=252
Score = 116 bits (291), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 99/252 (40%), Positives = 138/252 (55%), Gaps = 19/252 (7%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDD-PGYAAHGAAAR 59
M+ ++ P+IVVG+DGS+ A+ AA+WA+DEA RDIPLRL+Y I+P PG HG
Sbjct 1 MSTAYPAPAIVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDPHGAPG--GHGPDT- 57
Query 60 KLAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRP 119
+LAAA A+ A AV+A +PVKVE EI L+ S +A ++CVG IG++H
Sbjct 58 RLAAARAALDDAHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGLNHA-C 116
Query 120 ERVGSTAAALALSAQCPVAIVRPH-RVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLR 178
+ A +L SA CPVA+V+ +P + +V E D G +L EARLR
Sbjct 117 HGGPAIATSLVRSALCPVAVVQQAPSLPAAARVSGVVAEVDN----GTVLRHAFEEARLR 172
Query 179 DSPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRS 238
V C VG+ R L+R LARW YPDV+ +SA + G + +L R+
Sbjct 173 G----VGLC---AVGNP--SARVELERRLARWMRLYPDVQAESAVLTGGVEQHLRADHRA 223
Query 239 VHMVVLSASDQE 250
++V A E
Sbjct 224 GRLLVTDAYRAE 235
>gi|41409277|ref|NP_962113.1| hypothetical protein MAP3179c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118464029|ref|YP_883163.1| hypothetical protein MAV_4010 [Mycobacterium avium 104]
gi|41398097|gb|AAS05727.1| hypothetical protein MAP_3179c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118165316|gb|ABK66213.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=252
Score = 115 bits (287), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/252 (40%), Positives = 138/252 (55%), Gaps = 19/252 (7%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDD-PGYAAHGAAAR 59
M+ ++ P+IVVG+DGS+ A+ AA+WA+DEA RDIPLRL+Y I+P PG HG
Sbjct 1 MSTAYPAPAIVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDPHGAPG--GHGPDT- 57
Query 60 KLAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRP 119
+LAAA A+ A AV+A +PVKVE EI L+ S +A ++CVG IG++H
Sbjct 58 RLAAARAALADAHRAVDAFAQPVKVETEILWGNTAFKLLEQSRSAVMLCVGQIGLNHA-C 116
Query 120 ERVGSTAAALALSAQCPVAIVRPH-RVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLR 178
+ A +L SA CPVA+V+ +P + +V E D G +L EARLR
Sbjct 117 HGGPAIATSLVRSALCPVAVVQQAPSLPAAARVSGVVAEVDN----GTVLRHAFEEARLR 172
Query 179 DSPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRS 238
V C VG+ R L+R LARW YPDV+ +SA + G + +L R+
Sbjct 173 G----VGLC---AVGNP--SARVELERRLARWMRLYPDVQAESAVLTGGVEQHLRADHRA 223
Query 239 VHMVVLSASDQE 250
++V A E
Sbjct 224 GRLLVTDAYRAE 235
>gi|339295968|gb|AEJ48079.1| hypothetical protein CCDC5079_2889 [Mycobacterium tuberculosis
CCDC5079]
Length=184
Score = 114 bits (286), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 66/136 (49%), Positives = 87/136 (64%), Gaps = 4/136 (2%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ ++VVGIDGS+ A AALWAVDEA +RDIPLRL+Y I+P A G
Sbjct 1 MSDPRPARAVVVGIDGSRAATHAALWAVDEAVNRDIPLRLVYVIDPSQLSAAGEGGGQ-- 58
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
+AA A+ A VEA +PVK+E E+ RP+T L++ S +AA++CVG++G+ H R
Sbjct 59 -SAARAALHDASRKVEATGQPVKIETEVLCGRPLTKLMQESRSAAMLCVGSVGLDHVRGR 117
Query 121 RVGSTAAALALSAQCP 136
R GS AA LA SA CP
Sbjct 118 R-GSVAATLAGSALCP 132
>gi|254776433|ref|ZP_05217949.1| hypothetical protein MaviaA2_17439 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=257
Score = 114 bits (284), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 98/256 (39%), Positives = 137/256 (54%), Gaps = 27/256 (10%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAA-- 58
M+ ++ P+IVVG+DGS+ A+ AA+WA+DEA RDIPLRL+Y I+P HGA
Sbjct 6 MSTAYPAPAIVVGVDGSRAAMHAAVWAIDEAVGRDIPLRLVYVIDP-------HGAPGGH 58
Query 59 ---RKLAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVH 115
+LAAA A+ A AV+A +PVKVE EI L+ S +A ++CVG IG++
Sbjct 59 EPDTRLAAARAALADAHRAVDAFAQPVKVETEILWGNTAFQLLEQSRSAVMLCVGQIGLN 118
Query 116 HFRPERVGSTAAALALSAQCPVAIVRPH-RVPIGRDAAWIVVEADGSSDIGVLLGAVMAE 174
H + A +L SA CPVA+V+ +P + +V E D G +L E
Sbjct 119 HA-CHGGPAIATSLVRSALCPVAVVQQAPSLPAAARVSGVVAEVDN----GTVLRHAFEE 173
Query 175 ARLRDSPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAG 234
ARLR V C VG+ R L+R LARW YPDV+ +SA + G + +L
Sbjct 174 ARLRG----VGLC---AVGNP--SARVELERRLARWMRLYPDVQAESAVLTGGVEQHLRA 224
Query 235 LGRSVHMVVLSASDQE 250
R+ ++V A E
Sbjct 225 DHRAGRLLVTDAYRAE 240
>gi|240171515|ref|ZP_04750174.1| hypothetical protein MkanA1_19531 [Mycobacterium kansasii ATCC
12478]
Length=256
Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/269 (35%), Positives = 127/269 (48%), Gaps = 21/269 (7%)
Query 7 PPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDD-PGYAAHGAAARKLAAAE 65
P S+VV ++GS+ AV AA WA++EA R +PLRL+Y I D PG +A + +L AE
Sbjct 6 PKSVVVAVNGSQAAVNAAKWAIEEARGRQLPLRLVYVIPAADVPGGSAQNSEW-ELERAE 64
Query 66 NAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGST 125
A+ A A++ RPV+ E I P LI S AAL+CVG +G T
Sbjct 65 RALYQADGAIQGEGRPVETETAIRSGDPAQVLIGESQDAALICVGTARRGRAADGLLGPT 124
Query 126 AAALALSAQCPVAIVRPHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVV 185
AAAL A CPVAIVR + I V + +D ++ M E R R + VR
Sbjct 125 AAALVTGAHCPVAIVRTNPDGSPTKLGVIAVVLNDEADNDEVVHQAMEEGRRRHATVR-- 182
Query 186 TCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLS 245
+DR L W RYPDV VQ A G G ++ + V+
Sbjct 183 ----------------QIDRRLNSWVRRYPDVPVQIVAA-GTGAKAAERHGSAIDLAVVG 225
Query 246 ASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+D E + +L + +L C++LVV
Sbjct 226 ETDAEQLPELATPNCHPILGYPDCSILVV 254
>gi|342861029|ref|ZP_08717678.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT
3035]
gi|342131473|gb|EGT84743.1| hypothetical protein MCOL_19197 [Mycobacterium colombiense CECT
3035]
Length=241
Score = 105 bits (263), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 82/214 (39%), Positives = 113/214 (53%), Gaps = 14/214 (6%)
Query 25 LWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVRYAFTAVEAADRPVKV 84
+WA+DEA SRDIPLRL+Y I+ D G +A A A + AV+AA PVK+
Sbjct 1 MWAIDEAVSRDIPLRLVYVIDSHDASGVRAGDTRLAVARAALADAH--RAVDAAGEPVKI 58
Query 85 EVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVRPHR 144
E EI R V+ L+ AS +A +VC+G IG++H + AA+L SA CPVA+++
Sbjct 59 ETEILWGRTVSKLLEASRSAVMVCIGQIGLNHA-CHGGPAVAASLVRSALCPVAVIQQ-- 115
Query 145 VPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCRQSGVGDTGDDV----- 199
GR A + D G +L EARLR + +R V+ S V + D+
Sbjct 116 -SAGRPTAPRISGVVTEVDNGTVLRHAFDEARLRRATLRAVSV--SKVANVRDETPGKAS 172
Query 200 -RASLDRWLARWQPRYPDVRVQSAAVHGELLDYL 232
+ LDR LARW YPDV+ + V G + YL
Sbjct 173 AQGQLDRRLARWMRLYPDVQAEPVIVTGGVDRYL 206
>gi|145225571|ref|YP_001136249.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218057|gb|ABP47461.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=288
Score = 105 bits (263), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 95/262 (37%), Positives = 135/262 (52%), Gaps = 18/262 (6%)
Query 6 KPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAE 65
+ +++VG+DGS AA WAV EAASRD+PLRL++A+ G A+ LA A
Sbjct 3 RSSAVLVGVDGSATGAAAAAWAVKEAASRDLPLRLVHAVTATGDGRVD----AQDLARAG 58
Query 66 NAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGST 125
V A TAVEA PV++E +I +L AS AA++C+G R ST
Sbjct 59 RIVHNAVTAVEALGAPVRIESQIICGATAPALSAASHDAAMLCLGFTNGASGRHRARRST 118
Query 126 AAALALSAQCPVAIVRP--HRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVR 183
AA +A SA+CPVAI+ P + P R W+V EA S + EA LR +P+R
Sbjct 119 AAEIASSARCPVAIIHPAANHSPGAR---WVVAEAGASPSDDATSTRAVDEALLRGAPLR 175
Query 184 VVTCRQSGVGDTGDD---------VRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAG 234
+V S D DD V+A +RWLA + ++PD+ A G +L+YLA
Sbjct 176 IVAAWPSRYPDMYDDHAVARKNRLVKARWERWLAPRRRQHPDLDAHVTAAPGSILNYLAR 235
Query 235 LGRSVHMVVLSASDQEHVEQLV 256
+ + + VLS + V +L+
Sbjct 236 HRKGIRLAVLSHERADDVAELL 257
>gi|315445920|ref|YP_004078799.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
gi|315264223|gb|ADU00965.1| universal stress protein UspA-like protein [Mycobacterium sp.
Spyr1]
Length=266
Score = 104 bits (260), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 92/275 (34%), Positives = 138/275 (51%), Gaps = 12/275 (4%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M ++ +V GIDGS A+ AALWAVDEAA+R LRL+Y +P D A + R
Sbjct 1 MTTANSDMPVVAGIDGSAAALGAALWAVDEAAARGTTLRLVYVTKPSDRSAAEYAGDVRH 60
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
++R A V++ V VE EI P +L+ S A ++CVG++G+ +
Sbjct 61 ---GRQSLREAQVLVQSTGESVNVETEIVDGPPAQALVALSENAQMLCVGSVGIGRYARS 117
Query 121 RVGSTAAALALSAQCPVAIVRPHRVPIGRDA-AWIVVEADGSSDIGVLLGAVMAEARLRD 179
+GSTAA +A +A CPVA++RP +G D WI+V + ++ + EA LR
Sbjct 118 ILGSTAADVAAAAHCPVAVIRPES-RVGVDTPNWIIVAVNDRPHNDAVVEHALQEAALRH 176
Query 180 SPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSV 239
+PV V+ G G T L++ + W RYP V V A ++ +L V
Sbjct 177 APVLVL-----GDGRTAASAEV-LEQRIRPWHERYPQVHVYPIANRADVAHFLKKHDEPV 230
Query 240 HMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ VL + + V Q+VG G + L+ + LVV
Sbjct 231 LLAVLGDDEADEVAQIVGH-GRSALRHGASSALVV 264
>gi|296169092|ref|ZP_06850751.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295896212|gb|EFG75874.1| universal stress protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=256
Score = 104 bits (259), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/276 (32%), Positives = 133/276 (49%), Gaps = 24/276 (8%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+Q H ++VVG++GS+ AV AA WA+DEA +R +PLRL+Y I + ++ +
Sbjct 1 MSQLHAK-AVVVGVNGSRAAVNAAKWAIDEAIARQLPLRLVYVIPRREKHREPATSSEWE 59
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
+ E A+ A +AV++ +PV++E I P +LI S AALVCVG
Sbjct 60 VERGEIALAEAESAVQSERKPVEIETAIRSGAPGQALIDQSEDAALVCVGTARRGWASDG 119
Query 121 RVGSTAAALALSAQCPVAIVR--PHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLR 178
+G TA L A CPVAI+R P P G +V+ + +D ++ M E R R
Sbjct 120 LLGPTATDLVARAHCPVAIIRTDPDGSPTGLGVIAVVLNDEPDND--EVVHQAMEEGRRR 177
Query 179 DSPVRVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRS 238
+ VR +DR L W RYPDV VQ+ A G G
Sbjct 178 HATVR------------------QIDRRLNSWVRRYPDVHVQTVAA-GTGAKPSGKPGGR 218
Query 239 VHMVVLSASDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ + V+ ++D + + L + ++ C++LVV
Sbjct 219 IELAVVGSADADEMAGLATPNCHPIVGYPDCSVLVV 254
>gi|145225567|ref|YP_001136245.1| UspA domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|145218053|gb|ABP47457.1| UspA domain protein [Mycobacterium gilvum PYR-GCK]
Length=266
Score = 103 bits (257), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 92/267 (35%), Positives = 137/267 (52%), Gaps = 14/267 (5%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
+V GIDGS A+ AALWAVDEAA+R LRL+Y +P D A + R ++R
Sbjct 10 VVAGIDGSAAALGAALWAVDEAAARGATLRLVYVTKPSDRSAAEYAGDVRH---GRQSLR 66
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A V++ V VE EI P +L+ S A +VCVG++G+ + +GSTAA +
Sbjct 67 EAQVLVQSTGESVNVETEIVDGPPAQALVALSEHAQMVCVGSVGIGRYARSILGSTAADV 126
Query 130 ALSAQCPVAIVRPHRVPIGRDA-AWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTCR 188
A +A+CPVA++RP +G D WI+V + G ++ + EA LR + V V
Sbjct 127 AAAARCPVAVIRPES-RVGVDTPNWIIVAVNDRPHNGAVVEHALQEAALRHAAVLV---- 181
Query 189 QSGVGDTGDDVRAS-LDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSAS 247
+GD+ A L++ + W RYP V V A ++ +L V + VL
Sbjct 182 ---LGDSRTAASAEVLEQRIRPWHERYPQVHVYPIANRADVAHFLRKHDEPVLLAVLGDD 238
Query 248 DQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+ + V Q+VG G + L+ + LVV
Sbjct 239 EADEVAQIVGH-GRSALRHGASSALVV 264
>gi|183983464|ref|YP_001851755.1| hypothetical protein MMAR_3481 [Mycobacterium marinum M]
gi|183176790|gb|ACC41900.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=254
Score = 102 bits (255), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 89/268 (34%), Positives = 127/268 (48%), Gaps = 25/268 (9%)
Query 9 SIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAV 68
S+V GI+GS+ A+ AA WAVDEA SR +PLRL+Y I P + H A +L AE A+
Sbjct 8 SVVAGINGSQAAINAAKWAVDEAISRQLPLRLVYVI-PSQQTGSVH-APDWELERAERAL 65
Query 69 RYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAA 128
A AV++ P++VE + P LI S AL+CVG +G TAAA
Sbjct 66 AEAEGAVQSDGHPIEVETVVRAGEPAQVLIDESQETALICVGTARRGPATDGLLGPTAAA 125
Query 129 LALSAQCPVAIVR--PHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVT 186
L A CPVA++R P P +V+ D +D ++ A M E R R + VR
Sbjct 126 LVRGAHCPVAVIRTNPDGSPTELGVIAVVLNDDADND--EVVHAAMEEGRRRHAVVR--- 180
Query 187 CRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSA 246
+DR L W RYPDV VQ A G + ++ + V+
Sbjct 181 ---------------QIDRRLDSWVRRYPDVPVQVVA-SGTGARSVENHSSAIDLAVVGE 224
Query 247 SDQEHVEQLVGAPGNAVLQEAGCTLLVV 274
+D + + L + +L C++L+V
Sbjct 225 ADADELPGLATPNCHPILGYPDCSVLLV 252
>gi|315445924|ref|YP_004078803.1| universal stress family protein [Mycobacterium sp. Spyr1]
gi|315264227|gb|ADU00969.1| universal stress family protein [Mycobacterium sp. Spyr1]
Length=288
Score = 102 bits (253), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 96/266 (37%), Positives = 138/266 (52%), Gaps = 26/266 (9%)
Query 6 KPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAE 65
+ +++VG+DGS AA WAV EAASRD+PLRL++A+ G A+ LA A
Sbjct 3 RSSAVLVGVDGSATGAAAAAWAVKEAASRDLPLRLVHAVTATGDGR----VDAQDLARAG 58
Query 66 NAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCV----GAIGVHHFRPER 121
V A TAVEA PV++E +I +L AS AA++C+ GA G H R
Sbjct 59 RIVHNAVTAVEALGAPVRIESQIICGATAPALSAASHDAAMLCLGFTDGASGRHRAR--- 115
Query 122 VGSTAAALALSAQCPVAIVRP--HRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRD 179
STAA +A SA+CPVAI+ P + P R W+V E+ S + EA LR
Sbjct 116 -RSTAAEIASSARCPVAIIHPAGNHSPGAR---WVVAESGASPSDDATSTRAVDEALLRG 171
Query 180 SPVRVVTCRQSGVGDTGDD---------VRASLDRWLARWQPRYPDVRVQSAAVHGELLD 230
+P+R+V S D DD V+A +RWLA + ++P++ A G +L+
Sbjct 172 APLRIVAAWPSRYPDMYDDHAVARKNRLVKARWERWLAPRRRQHPELDAHVTAAPGSILN 231
Query 231 YLAGLGRSVHMVVLSASDQEHVEQLV 256
YLA + + + VLS + V +L+
Sbjct 232 YLARHRKGIRLAVLSHERADDVAELL 257
>gi|312141769|ref|YP_004009105.1| universal stress family protein [Rhodococcus equi 103S]
gi|311891108|emb|CBH50427.1| putative universal stress family protein [Rhodococcus equi 103S]
Length=283
Score = 100 bits (249), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/276 (28%), Positives = 140/276 (51%), Gaps = 3/276 (1%)
Query 1 MNQSHKPPSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARK 60
M+ +++ ++VG+DGS A+ A WA EA +R +PL+L++ I+ ++ +
Sbjct 1 MSPANETRPVIVGVDGSDAAIHAVRWAAVEAHARKVPLKLVHVIDTENDFPFVADDLEEE 60
Query 61 LAAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPE 120
AA A++ A A D + +EVE+ + R + + S A+L+ VG++G F
Sbjct 61 EAAGREALKAAREAATIEDYTIDIEVELLRGRVNRAFVDLSEKASLLVVGSVGAGFFERM 120
Query 121 RVGSTAAALALSAQCPVAIVR-PHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRD 179
+GSTA +LA A+C VA+VR P+ + +V D S +++G M EA +R
Sbjct 121 VLGSTALSLAHHAKCTVAVVRGADGSPVPPTSGPVVAGVDHSDSADIVVGTAMQEASIRH 180
Query 180 SPVRVVTC-RQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRS 238
+ + V R+ G + ++ R +DR +A ++P V+V++ +L L +
Sbjct 181 AEMTAVHARRRRGTQEADEEARGRIDRLIATLGAKFPSVQVETVIAEAGPTKHLVALSAT 240
Query 239 VHMVVLSASDQEHVEQ-LVGAPGNAVLQEAGCTLLV 273
+V+ + + E L+G+ ++L A C ++V
Sbjct 241 ARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIV 276
Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 24/65 (37%), Positives = 32/65 (50%), Gaps = 0/65 (0%)
Query 82 VKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVR 141
V+VE I + P L+ SA A + VG+ G F +GST +L AQCPV + R
Sbjct 219 VQVETVIAEAGPTKHLVALSATARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIVAR 278
Query 142 PHRVP 146
P
Sbjct 279 SRVTP 283
>gi|325672969|ref|ZP_08152663.1| universal stress protein [Rhodococcus equi ATCC 33707]
gi|325556222|gb|EGD25890.1| universal stress protein [Rhodococcus equi ATCC 33707]
Length=274
Score = 98.6 bits (244), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 74/267 (28%), Positives = 135/267 (51%), Gaps = 3/267 (1%)
Query 10 IVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIEPDDPGYAAHGAAARKLAAAENAVR 69
++VG+DGS A+ A WA EA +R +PL+L++ I+ ++ + AA A++
Sbjct 1 MIVGVDGSDAAIHAVRWAAVEAHARKVPLKLVHVIDTENDFPFVADDLEEEEAAGREALK 60
Query 70 YAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAAL 129
A A D + +EVE+ + R + + S A+L+ VG++G F +GSTA +L
Sbjct 61 AAREAATIEDYTIDIEVELLRGRVNRAFVDLSEKASLLVVGSVGAGFFERMVLGSTALSL 120
Query 130 ALSAQCPVAIVR-PHRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDSPVRVVTC- 187
A A+C VA+VR P+ + +V D S +++G M EA +R + + V
Sbjct 121 AHHAKCTVAVVRGADGSPVPPTSGPVVAGVDHSDSADIVVGTAMQEASIRHAEMTAVHAR 180
Query 188 RQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYLAGLGRSVHMVVLSAS 247
R+ G + ++ R +DR +A ++P V+V++ +L L + +V+ +
Sbjct 181 RRRGTQEADEEARGRIDRLIATLGAKFPSVQVETVIAEAGPTKHLVALSATARSIVVGSR 240
Query 248 DQEHVEQ-LVGAPGNAVLQEAGCTLLV 273
+ E L+G+ ++L A C ++V
Sbjct 241 GRGGFESALLGSTCQSLLYHAQCPVIV 267
Score = 39.7 bits (91), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/65 (37%), Positives = 32/65 (50%), Gaps = 0/65 (0%)
Query 82 VKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPERVGSTAAALALSAQCPVAIVR 141
V+VE I + P L+ SA A + VG+ G F +GST +L AQCPV + R
Sbjct 210 VQVETVIAEAGPTKHLVALSATARSIVVGSRGRGGFESALLGSTCQSLLYHAQCPVIVAR 269
Query 142 PHRVP 146
P
Sbjct 270 SRVTP 274
>gi|111017048|ref|YP_700020.1| universal stress protein [Rhodococcus jostii RHA1]
gi|110816578|gb|ABG91862.1| possible universal stress protein [Rhodococcus jostii RHA1]
Length=284
Score = 89.7 bits (221), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 85/284 (30%), Positives = 130/284 (46%), Gaps = 25/284 (8%)
Query 8 PSIVVGIDGSKPAVQAALWAVDEAASRDIPLRLLYAIE----PDDPGYAA--HGAAARKL 61
P+IVVG+DGS PA+ A WA EA R PL LL I D P A H A R +
Sbjct 4 PAIVVGVDGSGPALDAVRWAAREATVRRAPLLLLSCITYRGTEDGPRLAETLHARAERNV 63
Query 62 AAAENAVRYAFTAVEAADRPVKVEVEITQERPVTSLIRASAAAALVCVGAIGVHHFRPER 121
A A R +AD + + E++ + SL+ SA A +V +G G+ F
Sbjct 64 AEARETARAG-----SADADLDIRAEVSHQNAPGSLVDRSAGAEMVVLGRRGLGEFTDGL 118
Query 122 VGSTAAALALSAQCPVAIVRP-HRVPIGRDAAWIVVEADGSSDIGVLLGAVMAEARLRDS 180
+GS +A+ AQCPVA++ RV G +VV DGS +G E L ++
Sbjct 119 IGSVTSAVVRHAQCPVAVIDGWSRVADG--TGPVVVGIDGSPSSARAVGLAFEECSLHNA 176
Query 181 PV--------RVVTCRQSGVGDTGDDVRASLDRWLARWQPRYPDVRVQSAAVHGELLDYL 232
+ + ++ GV T + R+ LD +A W R+PDV V+ V + +L
Sbjct 177 ELIALHAWSDQDLSILPVGVEQTAE--RSVLDAAVAEWCERFPDVSVRRTLVRDRPVRHL 234
Query 233 AGLGRSVHMVVLSASDQEHVEQL-VGAPGNAVLQEAGCTLLVVG 275
+ M+V+ + + + +G+ A++ C LL+ G
Sbjct 235 LEMADEAQMIVVGSRGRGGFPGMTLGSTSAALVHITPCPLLIAG 278
Lambda K H
0.319 0.133 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 439663874064
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40