BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2039c
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609176|ref|NP_216555.1| sugar-transport integral membrane p... 557 5e-157
gi|15841527|ref|NP_336564.1| sugar ABC transporter, permease pro... 555 2e-156
gi|340627050|ref|YP_004745502.1| putative sugar-transport integr... 553 8e-156
gi|306780061|ref|ZP_07418398.1| sugar-transport membrane protein... 553 1e-155
gi|240170478|ref|ZP_04749137.1| putative sugar-transport integra... 481 5e-134
gi|296165106|ref|ZP_06847657.1| sugar ABC superfamily ATP bindin... 477 8e-133
gi|183983013|ref|YP_001851304.1| sugar ABC transporter [Mycobact... 476 2e-132
gi|254822134|ref|ZP_05227135.1| sugar ABC transporter, permease ... 475 4e-132
gi|41407865|ref|NP_960701.1| hypothetical protein MAP1767c [Myco... 473 2e-131
gi|118617775|ref|YP_906107.1| sugar ABC transporter [Mycobacteri... 470 1e-130
gi|342859733|ref|ZP_08716386.1| multiple sugar transport system ... 468 6e-130
gi|15827750|ref|NP_302013.1| ABC transporter inner membrane prot... 463 2e-128
gi|333990725|ref|YP_004523339.1| sugar ABC transporter [Mycobact... 446 1e-123
gi|319649318|ref|ZP_08003476.1| sugar ABC transporter [Bacillus ... 247 2e-63
gi|309388647|gb|ADO76527.1| carbohydrate ABC transporter membran... 243 2e-62
gi|229166726|ref|ZP_04294476.1| Sugar ABC transporter, permease ... 242 4e-62
gi|52143599|ref|YP_083231.1| sugar ABC transporter, permease [Ba... 242 5e-62
gi|42780970|ref|NP_978217.1| sugar ABC transporter, permease pro... 241 6e-62
gi|228914447|ref|ZP_04078057.1| Sugar ABC transporter, permease ... 240 2e-61
gi|337746565|ref|YP_004640727.1| binding-protein-dependent trans... 238 7e-61
gi|229029558|ref|ZP_04185638.1| Sugar ABC transporter, permease ... 236 2e-60
gi|226311300|ref|YP_002771194.1| ABC transporter permease [Brevi... 236 2e-60
gi|332980746|ref|YP_004462187.1| CUT1 family carbohydrate ABC tr... 236 3e-60
gi|229820149|ref|YP_002881675.1| binding-protein-dependent trans... 230 1e-58
gi|220932893|ref|YP_002509801.1| binding-protein-dependent trans... 227 1e-57
gi|219847654|ref|YP_002462087.1| binding-protein-dependent trans... 226 4e-57
gi|56965202|ref|YP_176934.1| sugar ABC transporter permease [Bac... 225 5e-57
gi|257067829|ref|YP_003154084.1| carbohydrate ABC transporter me... 224 8e-57
gi|313625520|gb|EFR95242.1| sugar ABC transporter, permease prot... 224 1e-56
gi|16799296|ref|NP_469564.1| hypothetical protein lin0219 [Liste... 224 1e-56
gi|16802226|ref|NP_463711.1| hypothetical protein lmo0180 [Liste... 224 1e-56
gi|313611380|gb|EFR86076.1| sugar ABC transporter, permease prot... 224 1e-56
gi|289433528|ref|YP_003463400.1| sugar ABC transporter permease ... 223 2e-56
gi|23100877|ref|NP_694344.1| sugar binding-protein dependent tra... 223 2e-56
gi|332981730|ref|YP_004463171.1| CUT1 family carbohydrate ABC tr... 223 3e-56
gi|163848226|ref|YP_001636270.1| binding-protein-dependent trans... 223 3e-56
gi|302385416|ref|YP_003821238.1| binding-protein-dependent trans... 222 6e-56
gi|56962098|ref|YP_173821.1| sugar ABC transporter permease [Bac... 221 7e-56
gi|239617424|ref|YP_002940746.1| binding-protein-dependent trans... 221 8e-56
gi|336422189|ref|ZP_08602341.1| hypothetical protein HMPREF0993_... 221 1e-55
gi|167759284|ref|ZP_02431411.1| hypothetical protein CLOSCI_0163... 220 2e-55
gi|227874441|ref|ZP_03992619.1| sugar ABC superfamily ATP bindin... 220 2e-55
gi|251794682|ref|YP_003009413.1| binding-protein-dependent trans... 219 3e-55
gi|256397004|ref|YP_003118568.1| binding-protein-dependent trans... 218 6e-55
gi|333996267|ref|YP_004528880.1| sugar ABC transporter permease ... 218 8e-55
gi|110803664|ref|YP_697806.1| ABC transporter permease [Clostrid... 218 9e-55
gi|284045433|ref|YP_003395773.1| binding-protein-dependent trans... 218 1e-54
gi|255029604|ref|ZP_05301555.1| hypothetical protein LmonL_11955... 217 2e-54
gi|157364148|ref|YP_001470915.1| binding-protein-dependent trans... 216 2e-54
gi|229827633|ref|ZP_04453702.1| hypothetical protein GCWU000182_... 216 3e-54
>gi|15609176|ref|NP_216555.1| sugar-transport integral membrane protein ABC transporter [Mycobacterium
tuberculosis H37Rv]
gi|148661853|ref|YP_001283376.1| sugar ABC transporter permease protein [Mycobacterium tuberculosis
H37Ra]
gi|167970430|ref|ZP_02552707.1| sugar ABC transporter permease protein [Mycobacterium tuberculosis
H37Ra]
10 more sequence titles
Length=280
Score = 557 bits (1436), Expect = 5e-157, Method: Compositional matrix adjust.
Identities = 279/280 (99%), Positives = 280/280 (100%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+GWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS
Sbjct 1 MGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM
Sbjct 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG
Sbjct 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY
Sbjct 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG
Sbjct 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
>gi|15841527|ref|NP_336564.1| sugar ABC transporter, permease protein [Mycobacterium tuberculosis
CDC1551]
gi|31793222|ref|NP_855715.1| sugar-transport integral membrane protein ABC transporter [Mycobacterium
bovis AF2122/97]
gi|121637925|ref|YP_978148.1| putative sugar-transport integral membrane protein ABC transporter
[Mycobacterium bovis BCG str. Pasteur 1173P2]
59 more sequence titles
Length=280
Score = 555 bits (1431), Expect = 2e-156, Method: Compositional matrix adjust.
Identities = 278/280 (99%), Positives = 279/280 (99%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+GWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS
Sbjct 1 MGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM
Sbjct 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG
Sbjct 121 VPLTVTVIPQFILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY
Sbjct 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG
Sbjct 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
>gi|340627050|ref|YP_004745502.1| putative sugar-transport integral membrane protein ABC transporter
[Mycobacterium canettii CIPT 140010059]
gi|340005240|emb|CCC44394.1| putative sugar-transport integral membrane protein ABC transporter
[Mycobacterium canettii CIPT 140010059]
Length=280
Score = 553 bits (1426), Expect = 8e-156, Method: Compositional matrix adjust.
Identities = 277/280 (99%), Positives = 278/280 (99%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+GWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS
Sbjct 1 MGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYL TLM
Sbjct 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLGTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG
Sbjct 121 VPLTVTVIPQFILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY
Sbjct 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG
Sbjct 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
>gi|306780061|ref|ZP_07418398.1| sugar-transport membrane protein ABC transporter [Mycobacterium
tuberculosis SUMu002]
gi|306789166|ref|ZP_07427488.1| sugar-transport membrane protein ABC transporter [Mycobacterium
tuberculosis SUMu004]
gi|306793499|ref|ZP_07431801.1| sugar-transport membrane protein ABC transporter [Mycobacterium
tuberculosis SUMu005]
gi|308327040|gb|EFP15891.1| sugar-transport membrane protein ABC transporter [Mycobacterium
tuberculosis SUMu002]
gi|308334374|gb|EFP23225.1| sugar-transport membrane protein ABC transporter [Mycobacterium
tuberculosis SUMu004]
gi|308338173|gb|EFP27024.1| sugar-transport membrane protein ABC transporter [Mycobacterium
tuberculosis SUMu005]
Length=280
Score = 553 bits (1425), Expect = 1e-155, Method: Compositional matrix adjust.
Identities = 277/280 (99%), Positives = 279/280 (99%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+GWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS
Sbjct 1 MGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM
Sbjct 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG
Sbjct 121 VPLTVTVIPQFILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLP+SRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY
Sbjct 181 CSPWQIYWRILLPYSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG
Sbjct 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
>gi|240170478|ref|ZP_04749137.1| putative sugar-transport integral membrane protein ABC transporter
[Mycobacterium kansasii ATCC 12478]
Length=280
Score = 481 bits (1238), Expect = 5e-134, Method: Compositional matrix adjust.
Identities = 241/280 (87%), Positives = 259/280 (93%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+G ADR+V R+ +R LALY LI IAWCALFPI+WALSGSLK +GEV++PTL P HPQWS
Sbjct 1 MGSADRVVMRNVVRVLALYTALIAIAWCALFPIMWALSGSLKREGEVSQPTLIPDHPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NY EVFALMPFWRM FNTVLYAGCVTAGQVFFCSLAGYAFARL FRGRDTLFV+YL TLM
Sbjct 61 NYGEVFALMPFWRMLFNTVLYAGCVTAGQVFFCSLAGYAFARLHFRGRDTLFVMYLGTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ILMR++GWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLP DLEEAAILDG
Sbjct 121 VPLTVTVIPQFILMRVLGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPADLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLPH+RPAV+VL VLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY
Sbjct 181 CSPWQIYWRILLPHARPAVMVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPV MA SML+L+PLV++Y VAQRSF+RGIA TGLGG
Sbjct 241 VARWPVFMATSMLILLPLVLVYGVAQRSFIRGIAATGLGG 280
>gi|296165106|ref|ZP_06847657.1| sugar ABC superfamily ATP binding cassette transporter, membrane
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899518|gb|EFG78973.1| sugar ABC superfamily ATP binding cassette transporter, membrane
protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=280
Score = 477 bits (1228), Expect = 8e-133, Method: Compositional matrix adjust.
Identities = 230/277 (84%), Positives = 255/277 (93%), Gaps = 0/277 (0%)
Query 4 ADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYR 63
A+R RH +RG+ Y LIGIAWC LFPI WA+SGSLK +GE+ EP L+P+HP+WSNY
Sbjct 4 AERFFTRHVVRGVLAYTALIGIAWCWLFPIAWAVSGSLKGEGEIVEPRLWPAHPRWSNYT 63
Query 64 EVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPL 123
EVF+LMPF RMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYL TLMVPL
Sbjct 64 EVFSLMPFARMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLGTLMVPL 123
Query 124 TVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSP 183
TVTVIPQ ILMR VGWVDTPW+MIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSP
Sbjct 124 TVTVIPQFILMRTVGWVDTPWSMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSP 183
Query 184 WQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVAR 243
WQIYW++LLPH+RPAV+VL VLTWVNVWNDFLWPLLM+Q N LATLTLGLVRLRGEYVAR
Sbjct 184 WQIYWQVLLPHARPAVMVLAVLTWVNVWNDFLWPLLMLQHNRLATLTLGLVRLRGEYVAR 243
Query 244 WPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
WP++MAAS+L+++PLV++YA+AQRSFVRGIAVTGL G
Sbjct 244 WPIIMAASILIMLPLVVVYAIAQRSFVRGIAVTGLNG 280
>gi|183983013|ref|YP_001851304.1| sugar ABC transporter [Mycobacterium marinum M]
gi|183176339|gb|ACC41449.1| sugar ABC transporter [Mycobacterium marinum M]
Length=280
Score = 476 bits (1225), Expect = 2e-132, Method: Compositional matrix adjust.
Identities = 238/280 (85%), Positives = 260/280 (93%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+G ADR+V R +R +ALYA LI IAWCALFPI+WALSGSLK GEV+EP L PS PQWS
Sbjct 1 MGSADRVVQRKIVRAVALYAALIAIAWCALFPILWALSGSLKKSGEVSEPRLLPSDPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NY EVF LMPFWRMFFNTVLYAGCVTAGQ+FFCSLAGYAFARL+FRGRDTLFVLYL TLM
Sbjct 61 NYAEVFTLMPFWRMFFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ILMR VG VDTPWAMIVPGLFGSAFGTYLMRQFFRTLP+DLEEAA LDG
Sbjct 121 VPLTVTVIPQFILMRTVGLVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPSDLEEAATLDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLPH+RPAV+VLGVLTWVNVWNDFLWPLLM+QR+S+ATLTLGLVR++GEY
Sbjct 181 CSPWQIYWRILLPHARPAVMVLGVLTWVNVWNDFLWPLLMVQRDSIATLTLGLVRMQGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMA SML+L+PLV++YAVAQR+F+RGIAVTGLGG
Sbjct 241 VARWPVLMATSMLILLPLVVVYAVAQRAFIRGIAVTGLGG 280
>gi|254822134|ref|ZP_05227135.1| sugar ABC transporter, permease [Mycobacterium intracellulare
ATCC 13950]
Length=280
Score = 475 bits (1222), Expect = 4e-132, Method: Compositional matrix adjust.
Identities = 227/280 (82%), Positives = 257/280 (92%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+G ++ ++ R +RG +YA L+GIAWCALFPI WA+SGSLK +GEV+EPTL P+HP+WS
Sbjct 1 MGLSEGVIRRTALRGGMVYAALLGIAWCALFPIAWAVSGSLKTEGEVSEPTLLPAHPRWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NY EVFAL+PF RMFFNTVLYAGCVTAG VFFCSLAGYAFARL FRGRD LFV+YL TLM
Sbjct 61 NYTEVFALLPFGRMFFNTVLYAGCVTAGHVFFCSLAGYAFARLDFRGRDALFVVYLGTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ++MR +GWVDTPWAMIVPG FGSAFGTYLMRQFFRTLPTDLEEAAILDG
Sbjct 121 VPLTVTVIPQFLVMRTLGWVDTPWAMIVPGFFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQ+YWRILLPH+RPAV+VL VLTWVNVWNDFLWPLLMIQRNSLATLTLGLVR++GEY
Sbjct 181 CSPWQVYWRILLPHARPAVMVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMKGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMA S+L+++PLV++YA AQRSFVRGIAVTG+GG
Sbjct 241 VARWPVLMATSILIMLPLVVIYAFAQRSFVRGIAVTGMGG 280
>gi|41407865|ref|NP_960701.1| hypothetical protein MAP1767c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118462451|ref|YP_881670.1| sugar ABC transporter permease [Mycobacterium avium 104]
gi|254775138|ref|ZP_05216654.1| sugar ABC transporter, permease [Mycobacterium avium subsp. avium
ATCC 25291]
gi|41396219|gb|AAS04084.1| hypothetical protein MAP_1767c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118163738|gb|ABK64635.1| sugar ABC transporter, permease [Mycobacterium avium 104]
gi|336457341|gb|EGO36354.1| ABC-type sugar transport system, permease component [Mycobacterium
avium subsp. paratuberculosis S397]
Length=280
Score = 473 bits (1216), Expect = 2e-131, Method: Compositional matrix adjust.
Identities = 225/280 (81%), Positives = 256/280 (92%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+G ++ ++ R +R +YA L+GIAWCALFPI WA+SGSLK +GEV+EPTL P+ P+WS
Sbjct 1 MGSSEAVIKRTVLRAATVYAALLGIAWCALFPIAWAVSGSLKTEGEVSEPTLVPARPRWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NY EVFALMP RMF NTVLYAGCVTAG VFFCSLAGYAFARL FRGR+TLFV+YL TLM
Sbjct 61 NYTEVFALMPIGRMFVNTVLYAGCVTAGHVFFCSLAGYAFARLDFRGRNTLFVVYLGTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIPQ ++MR +GWVDTPWAMIVPG FGSAFGTYLMRQFFRTLPTDLEEAAILDG
Sbjct 121 VPLTVTVIPQFLIMRTLGWVDTPWAMIVPGFFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
C+PWQ+YWRILLPH+RPAV+VL VLTWVNVWNDFLWPLLMIQR+SLATLTLGLVR++GEY
Sbjct 181 CTPWQVYWRILLPHARPAVMVLAVLTWVNVWNDFLWPLLMIQRSSLATLTLGLVRMKGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMAASML+++PLVI+YA+AQRSFVRGIAVTG+GG
Sbjct 241 VARWPVLMAASMLIMLPLVIIYAIAQRSFVRGIAVTGMGG 280
>gi|118617775|ref|YP_906107.1| sugar ABC transporter [Mycobacterium ulcerans Agy99]
gi|118569885|gb|ABL04636.1| sugar ABC transporter [Mycobacterium ulcerans Agy99]
Length=280
Score = 470 bits (1209), Expect = 1e-130, Method: Compositional matrix adjust.
Identities = 235/280 (84%), Positives = 259/280 (93%), Gaps = 0/280 (0%)
Query 1 VGWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWS 60
+G ADR+V R+ +R +ALYA LI IAWCA+FPI+WALSGSLK GEV+EP L PS PQWS
Sbjct 1 MGSADRVVQRNIVRAVALYAALIAIAWCAMFPILWALSGSLKKGGEVSEPRLLPSDPQWS 60
Query 61 NYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLM 120
NY EVF LMPFWRMFFNTVLYAGCVTAGQ+FFCSLAGYAFARL+FRGRDTLFVLYL TLM
Sbjct 61 NYAEVFTLMPFWRMFFNTVLYAGCVTAGQIFFCSLAGYAFARLEFRGRDTLFVLYLGTLM 120
Query 121 VPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDG 180
VPLTVTVIP ILMR VG VDTPWAMIVPGLFGSAFGTYLMRQFFRTLP+DLE+AA LDG
Sbjct 121 VPLTVTVIPHFILMRTVGLVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPSDLEKAATLDG 180
Query 181 CSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEY 240
CSPWQIYWRILLPH+RPAV+VLGVLTWVNVWNDFLWPLLM+QR+S+ATLTLGLVR++GEY
Sbjct 181 CSPWQIYWRILLPHARPAVMVLGVLTWVNVWNDFLWPLLMVQRDSIATLTLGLVRMQGEY 240
Query 241 VARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
VARWPVLMA SML+L+PLV +YAVAQR+F+RGIAVTGLGG
Sbjct 241 VARWPVLMATSMLILLPLVAVYAVAQRAFIRGIAVTGLGG 280
>gi|342859733|ref|ZP_08716386.1| multiple sugar transport system permease protein [Mycobacterium
colombiense CECT 3035]
gi|342132865|gb|EGT86085.1| multiple sugar transport system permease protein [Mycobacterium
colombiense CECT 3035]
Length=269
Score = 468 bits (1203), Expect = 6e-130, Method: Compositional matrix adjust.
Identities = 221/268 (83%), Positives = 249/268 (93%), Gaps = 0/268 (0%)
Query 13 IRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYREVFALMPFW 72
+RG +Y GL+ +AWCALFPI WA+SGSLK +GEV+EPTL P+HP+WSNY EVFALMPF
Sbjct 2 LRGGIVYGGLLAVAWCALFPIAWAVSGSLKTEGEVSEPTLLPAHPRWSNYTEVFALMPFG 61
Query 73 RMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVI 132
RMFFNTVLYAGCVTAG VFFCSLAGYAFARL FRGRD LFV+YL TLMVPLTVTVIPQ +
Sbjct 62 RMFFNTVLYAGCVTAGHVFFCSLAGYAFARLDFRGRDALFVVYLGTLMVPLTVTVIPQFL 121
Query 133 LMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILL 192
+MR +GWVDTPWAMI PG FGSAFGTYLMRQFFRTLPTDLEEAAILDGC+PWQ+YWRILL
Sbjct 122 VMRTLGWVDTPWAMIAPGFFGSAFGTYLMRQFFRTLPTDLEEAAILDGCTPWQVYWRILL 181
Query 193 PHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASM 252
PH+RPAV+VL VLTWVNVWNDFLWPLLM+QRNSLATLTLGLVR++GEYVARWPVLMA SM
Sbjct 182 PHARPAVMVLAVLTWVNVWNDFLWPLLMLQRNSLATLTLGLVRMKGEYVARWPVLMATSM 241
Query 253 LMLVPLVILYAVAQRSFVRGIAVTGLGG 280
L+++PL+++YA+AQRSFVRGIAVTG+GG
Sbjct 242 LIMLPLIVIYAIAQRSFVRGIAVTGMGG 269
>gi|15827750|ref|NP_302013.1| ABC transporter inner membrane protein [Mycobacterium leprae
TN]
gi|221230227|ref|YP_002503643.1| putative ABC-transport protein, inner membrane component [Mycobacterium
leprae Br4923]
gi|2337835|emb|CAB11327.1| possible transport protein [Mycobacterium leprae]
gi|13093302|emb|CAC30376.1| probable ABC-transport protein, inner membrane component [Mycobacterium
leprae]
gi|219933334|emb|CAR71520.1| probable ABC-transport protein, inner membrane component [Mycobacterium
leprae Br4923]
Length=283
Score = 463 bits (1191), Expect = 2e-128, Method: Compositional matrix adjust.
Identities = 221/276 (81%), Positives = 247/276 (90%), Gaps = 0/276 (0%)
Query 5 DRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYRE 64
+ IV R +R + +Y L GIAWCALFPI+WALSGSLK +GE+ EPTL P+HPQWSNY E
Sbjct 8 NHIVKRSVLRAVVVYIALTGIAWCALFPIVWALSGSLKKEGEIREPTLLPAHPQWSNYTE 67
Query 65 VFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLT 124
VF L+PFWRMFFNTVLYAG VT GQVFFCSLAGYAFARLQFRGRD LFVLYL TLM+PLT
Sbjct 68 VFDLIPFWRMFFNTVLYAGYVTVGQVFFCSLAGYAFARLQFRGRDALFVLYLGTLMMPLT 127
Query 125 VTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPW 184
VT+IPQ ILMR++GW DTPWAMIVPGLFGSAFGTYLMRQFFRTLP+DLEEAAILDGCSPW
Sbjct 128 VTIIPQFILMRVLGWTDTPWAMIVPGLFGSAFGTYLMRQFFRTLPSDLEEAAILDGCSPW 187
Query 185 QIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARW 244
QIYWR+LLPH++PAV VL VLTWVNVWNDFLWPLLMIQRNSLATLTLGLVR+RGEY W
Sbjct 188 QIYWRVLLPHAKPAVGVLAVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRMRGEYGTCW 247
Query 245 PVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
PV+MA SML+++PLVI+Y +AQR+FVRGI VT +GG
Sbjct 248 PVIMATSMLIILPLVIIYTIAQRAFVRGITVTRIGG 283
>gi|333990725|ref|YP_004523339.1| sugar ABC transporter [Mycobacterium sp. JDM601]
gi|333486693|gb|AEF36085.1| sugar ABC transporter [Mycobacterium sp. JDM601]
Length=279
Score = 446 bits (1148), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 219/272 (81%), Positives = 240/272 (89%), Gaps = 1/272 (0%)
Query 10 RHFIRGL-ALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQWSNYREVFAL 68
RH I GL A+YAGL G+A CALFPI+WALSGSLK E++ P L P+HPQWSNY EVFA
Sbjct 7 RHRITGLLAVYAGLAGVAACALFPILWALSGSLKRQAEISLPMLLPAHPQWSNYLEVFAR 66
Query 69 MPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVI 128
MPFWRMFFNTVLYAGCVT GQVFFCSLAGYAFARL F GRDTLFVLYL+TLMVPLTVTVI
Sbjct 67 MPFWRMFFNTVLYAGCVTVGQVFFCSLAGYAFARLPFTGRDTLFVLYLATLMVPLTVTVI 126
Query 129 PQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYW 188
PQ ILMR+ GW DT WAMI+PGLFGSAFGTYLMRQFF TLP DLEEAAILDGCSPW +YW
Sbjct 127 PQFILMRVFGWTDTVWAMIIPGLFGSAFGTYLMRQFFATLPVDLEEAAILDGCSPWGVYW 186
Query 189 RILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLM 248
RILLPH++PAV+VL VLTW+NVWNDFLWPLLMIQR +ATLTLGLV ++GEYVA WPVLM
Sbjct 187 RILLPHAKPAVMVLAVLTWINVWNDFLWPLLMIQREEIATLTLGLVWMQGEYVAEWPVLM 246
Query 249 AASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
AASMLML PL+++YAVAQR+FV GIA TG GG
Sbjct 247 AASMLMLAPLILIYAVAQRAFVSGIAATGFGG 278
>gi|319649318|ref|ZP_08003476.1| sugar ABC transporter [Bacillus sp. 2_A_57_CT2]
gi|317398952|gb|EFV79632.1| sugar ABC transporter [Bacillus sp. 2_A_57_CT2]
Length=277
Score = 247 bits (630), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 123/275 (45%), Positives = 185/275 (68%), Gaps = 3/275 (1%)
Query 5 DRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNY 62
DR + + + LI A + P +W + SLK E + P L P QW NY
Sbjct 2 DRAIKLITSKTFLFHFILIIGAAAMVLPFLWMILTSLKTYAESIQVPPVLIPEDFQWGNY 61
Query 63 REVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVP 122
+EVF L+PF++ +NTV+ TAGQ+F CSLA YAFAR++F GR+ LF+L L+ LMVP
Sbjct 62 KEVFGLLPFFKFMYNTVIITVLRTAGQLFLCSLAAYAFARIEFPGRNILFLLALTVLMVP 121
Query 123 LTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCS 182
V ++PQ ++M +GW+++ A+IVPGLF SAFGT+L+RQFF LP +LEEAA LDGC+
Sbjct 122 GQVFLLPQYMIMVKLGWLNSLQAVIVPGLF-SAFGTFLLRQFFMGLPKELEEAARLDGCN 180
Query 183 PWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVA 242
+QIYW+++LP ++P ++ LG+ T + WN+ +WP+++ TL++GL L+G+++
Sbjct 181 HFQIYWKVMLPLAKPGLIALGIFTTLWSWNELMWPMIVNSSPESMTLSVGLSSLQGQFLT 240
Query 243 RWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTG 277
+P+LMA S L ++P++IL+ Q+ F+ GIAVTG
Sbjct 241 NYPILMAGSFLAILPMLILFIFLQKQFIEGIAVTG 275
>gi|309388647|gb|ADO76527.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Halanaerobium praevalens DSM 2228]
Length=278
Score = 243 bits (620), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 121/251 (49%), Positives = 171/251 (69%), Gaps = 3/251 (1%)
Query 32 PIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89
P IW L SLK GE T+ P +FP WSNY +V L+PF + FFNT + A T GQ
Sbjct 29 PFIWMLLTSLKTLGETTQVPPVIFPKEIIWSNYSDVLKLLPFAKFFFNTFITALGRTVGQ 88
Query 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149
+ S+A YAFAR++F GR LF++ LS LMVP IPQ I+M +GW+++ A+I P
Sbjct 89 LLISSMAAYAFARIEFPGRKMLFLMILSILMVPPQSFYIPQYIIMGKLGWLNSLKALIFP 148
Query 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209
GLF SAFGT+L+RQFF TLP +LEE+A LDGC+ +QIYW I+LP ++P ++ L +
Sbjct 149 GLF-SAFGTFLLRQFFMTLPKELEESARLDGCNHFQIYWHIMLPLAKPGLIALAIFVVRW 207
Query 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269
WNDF+WPL++ S TL++GL L+G+Y+ +PVLMA +++ + P++I++ + Q+ F
Sbjct 208 SWNDFMWPLIVNTSTSKMTLSVGLASLQGQYLTNYPVLMAGALIAIFPMLIIFILLQKQF 267
Query 270 VRGIAVTGLGG 280
V GIA+TG G
Sbjct 268 VEGIALTGTKG 278
>gi|229166726|ref|ZP_04294476.1| Sugar ABC transporter, permease protein [Bacillus cereus AH621]
gi|228616723|gb|EEK73798.1| Sugar ABC transporter, permease protein [Bacillus cereus AH621]
Length=264
Score = 242 bits (618), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 120/262 (46%), Positives = 177/262 (68%), Gaps = 3/262 (1%)
Query 18 LYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMF 75
++A LI A + P IW + SLK E + P + PS WSNY E+F L+PF +
Sbjct 2 IHAMLIIGALLTIGPFIWMILTSLKTYAESVQVPPVIIPSQFMWSNYTEIFNLLPFLKFM 61
Query 76 FNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMR 135
NT++ T GQ+F CSLA YAFAR+QF GR+ LF+L LS LMVP V ++PQ ++M
Sbjct 62 MNTLIVTIARTVGQLFLCSLAAYAFARIQFPGRNILFLLTLSVLMVPAQVFLLPQYLIMV 121
Query 136 IVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHS 195
+ W++T A+IVPGLF SAFGT+L+RQFF +P +LEEAA LDGC+ +QIYW ++LP +
Sbjct 122 KLDWLNTLQAVIVPGLF-SAFGTFLLRQFFMGIPKELEEAARLDGCNHFQIYWHVMLPLA 180
Query 196 RPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLML 255
+P ++ LG+ T + WN+ +WP+++ + TL++GL L+G+Y +PVLMA S L +
Sbjct 181 KPGLIALGIFTTLWSWNELMWPMIVNNSPDMMTLSVGLSSLQGQYATNYPVLMAGSFLAI 240
Query 256 VPLVILYAVAQRSFVRGIAVTG 277
+P+++L+ Q+ F+ GI +TG
Sbjct 241 LPMLLLFIFLQKQFIEGITITG 262
>gi|52143599|ref|YP_083231.1| sugar ABC transporter, permease [Bacillus cereus E33L]
gi|51977068|gb|AAU18618.1| sugar ABC transporter, permease [Bacillus cereus E33L]
Length=277
Score = 242 bits (617), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 117/248 (48%), Positives = 170/248 (69%), Gaps = 3/248 (1%)
Query 32 PIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89
P IW + SLK E + P + PS WSNY E+F L+PF + NTV+ T GQ
Sbjct 29 PFIWMILTSLKTYAESVQVSPVIIPSQFMWSNYTEIFNLLPFLKFMMNTVIVTIARTIGQ 88
Query 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149
+F CSLA YAFAR+QF GR+ LF+L LS LMVP V ++PQ ++M + W++T A+IVP
Sbjct 89 LFLCSLAAYAFARIQFPGRNVLFLLTLSVLMVPAQVFLLPQYLIMVKLDWLNTLQAVIVP 148
Query 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209
GLF SAFGT+L+RQFF +P +LEEAA LDGC+ +QIYW ++LP ++P ++ LG+ T +
Sbjct 149 GLF-SAFGTFLLRQFFMGVPKELEEAARLDGCNHFQIYWYVMLPLAKPGLIALGIFTTLW 207
Query 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269
WN+ +WP+++ + TL++GL L+G+Y +PVLMA S L ++P+++L+ Q+ F
Sbjct 208 SWNELMWPMIVNNSPDMMTLSVGLSSLQGQYATNYPVLMAGSFLAILPMLLLFIFLQKQF 267
Query 270 VRGIAVTG 277
+ GI +TG
Sbjct 268 IEGITITG 275
>gi|42780970|ref|NP_978217.1| sugar ABC transporter, permease protein [Bacillus cereus ATCC
10987]
gi|42736891|gb|AAS40825.1| sugar ABC transporter, permease protein [Bacillus cereus ATCC
10987]
Length=277
Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 121/266 (46%), Positives = 176/266 (67%), Gaps = 3/266 (1%)
Query 14 RGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPF 71
+ ++A LI A + P IW + SLK E + P + PS WSNY E+F L+PF
Sbjct 11 NKIMIHAMLIIGALLTMGPFIWMILTSLKTYAESVQVSPVIIPSQFMWSNYTEIFNLLPF 70
Query 72 WRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQV 131
+ NTV+ T GQ+F CSLA YAFAR+QF GR LF+L LS LMVP V ++PQ
Sbjct 71 LKFMMNTVIVTIARTIGQLFLCSLAAYAFARIQFPGRSVLFLLTLSVLMVPAQVFLLPQY 130
Query 132 ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRIL 191
++M + W++T A+IVPGLF SAFGT+L+RQFF +P +LEEAA LDGC+ +QIYW ++
Sbjct 131 LIMVKLDWLNTLQAVIVPGLF-SAFGTFLLRQFFMGVPKELEEAARLDGCNHFQIYWYVM 189
Query 192 LPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAAS 251
LP ++P ++ LG+ T WN+ +WP+++ + TL++GL L+G+Y +PVLMA S
Sbjct 190 LPLAKPGLIALGIFTTFWSWNELMWPMIVNNSPDMMTLSVGLSSLQGQYATNYPVLMAGS 249
Query 252 MLMLVPLVILYAVAQRSFVRGIAVTG 277
L ++P+++L+ Q+ F+ GI +TG
Sbjct 250 FLAILPMLLLFIFLQKQFIEGITITG 275
>gi|228914447|ref|ZP_04078057.1| Sugar ABC transporter, permease protein [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
gi|228845158|gb|EEM90199.1| Sugar ABC transporter, permease protein [Bacillus thuringiensis
serovar pulsiensis BGSC 4CC1]
Length=264
Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 121/273 (45%), Positives = 177/273 (65%), Gaps = 13/273 (4%)
Query 7 IVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYRE 64
++H I G L G P IW + SLK E + P + PS WSNY E
Sbjct 1 MIHTMLIIGALLTIG----------PFIWMILTSLKTYAESVQVSPVIIPSQFMWSNYTE 50
Query 65 VFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLT 124
+F L+PF + NTV+ T GQ+F CSLA YAFAR++F GR+ LF+L LS LMVP
Sbjct 51 IFNLLPFLKFMMNTVIVTIARTIGQLFLCSLAAYAFARIKFPGRNVLFLLTLSVLMVPAQ 110
Query 125 VTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPW 184
V ++PQ ++M + W++T A+IVPGLF SAFGT+L+RQFF +P +LEEAA LDGC+ +
Sbjct 111 VFLLPQYLIMVKLDWLNTLQAVIVPGLF-SAFGTFLLRQFFMGVPKELEEAARLDGCNHF 169
Query 185 QIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARW 244
QIYW ++LP ++P ++ LG+ T + WN+ +WP+++ + TL++GL L+G+Y +
Sbjct 170 QIYWYVMLPLAKPGLIALGIFTTLWSWNELMWPMIVNNSPDMMTLSVGLSSLQGQYATNY 229
Query 245 PVLMAASMLMLVPLVILYAVAQRSFVRGIAVTG 277
PVLMA S L ++P+++L+ Q+ F+ GI +TG
Sbjct 230 PVLMAGSFLAILPMLLLFIFLQKQFIEGITITG 262
>gi|337746565|ref|YP_004640727.1| binding-protein-dependent transport systems inner membrane component
[Paenibacillus mucilaginosus KNP414]
gi|336297754|gb|AEI40857.1| binding-protein-dependent transport systems inner membrane component
[Paenibacillus mucilaginosus KNP414]
Length=275
Score = 238 bits (607), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 121/256 (48%), Positives = 171/256 (67%), Gaps = 9/256 (3%)
Query 30 LFPIIWALSGSLKADGEVTEPTLFPSHP-----QWSNYREVFALMPFWRMFFNTVLYAGC 84
+ P +W +S SLK +++E +FP P QW NY + PF FFN+V
Sbjct 23 ILPFLWTVSTSLK---QLSEVFVFPPKPFGAELQWGNYLRISERFPFDTYFFNSVKITLI 79
Query 85 VTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPW 144
V A Q+ S+AG+ FARL+FRGRD LF LYL+T+MVP VT+IP I+MR VDT W
Sbjct 80 VVAAQLVTSSMAGFVFARLRFRGRDLLFGLYLATMMVPAQVTMIPNFIVMRSYNLVDTHW 139
Query 145 AMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGV 204
A+I+P L SAFGT+L+RQFF T+P LE+AA +DGC+P+ IYWRI +P S+PA+ LGV
Sbjct 140 ALILPALV-SAFGTFLLRQFFVTIPESLEDAAKIDGCTPFGIYWRIFIPLSKPAMATLGV 198
Query 205 LTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAV 264
++ WNDF+ PL+ I L TL LGL ++G Y WPVLMA +++ ++PL++++ +
Sbjct 199 FVFMGTWNDFIAPLVYINSVDLMTLPLGLASMQGMYSTDWPVLMAGTVICILPLIVIFLL 258
Query 265 AQRSFVRGIAVTGLGG 280
AQ F++G+ ++GL G
Sbjct 259 AQDFFIKGVTLSGLKG 274
>gi|229029558|ref|ZP_04185638.1| Sugar ABC transporter, permease protein [Bacillus cereus AH1271]
gi|228731757|gb|EEL82659.1| Sugar ABC transporter, permease protein [Bacillus cereus AH1271]
Length=245
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 114/240 (48%), Positives = 167/240 (70%), Gaps = 3/240 (1%)
Query 40 SLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAG 97
SLK E + P + PS WSNY E+F L+PF++ NTV+ T GQ+F CSLA
Sbjct 5 SLKTYTESVQVSPVIIPSQFMWSNYTEIFNLLPFFKFMMNTVIVTIARTVGQLFLCSLAA 64
Query 98 YAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFG 157
YAFAR+QF GR+ LF+L LS LMVP V ++PQ ++M + W++T A+IVPGLF SAFG
Sbjct 65 YAFARIQFPGRNVLFLLTLSVLMVPAQVFLLPQYLIMVKLDWLNTLQAVIVPGLF-SAFG 123
Query 158 TYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWP 217
T+L+RQFF +P +LEEAA LDGC+ +QIYW ++LP ++P ++ LG+ T + WN+ +WP
Sbjct 124 TFLLRQFFMGVPKELEEAARLDGCNHFQIYWYVMLPLAKPGLIALGIFTTLWSWNELMWP 183
Query 218 LLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTG 277
+++ + TL++GL L+G+Y +PVLMA S L ++P+++L+ Q+ F+ GI +TG
Sbjct 184 MIVNNSPDMMTLSVGLSSLQGQYATNYPVLMAGSFLAILPMLLLFVFLQKQFIEGITITG 243
>gi|226311300|ref|YP_002771194.1| ABC transporter permease [Brevibacillus brevis NBRC 100599]
gi|226094248|dbj|BAH42690.1| probable ABC transporter permease protein [Brevibacillus brevis
NBRC 100599]
Length=271
Score = 236 bits (603), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 117/250 (47%), Positives = 172/250 (69%), Gaps = 5/250 (2%)
Query 32 PIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89
P +W + SLK+ GE T+ P + P+ QW NY +F ++PF ++NTV+ GQ
Sbjct 21 PFVWMVLTSLKSLGESTQVPPVILPTKYQWENYTHIFEMLPFLDFYWNTVITTVAKVIGQ 80
Query 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149
VF CSLA YAFAR++F GR+ LF+L+L+ LMVP V ++PQ ++M+ +GW++T A+IVP
Sbjct 81 VFLCSLAAYAFARIEFPGRNALFILFLTVLMVPGQVFLLPQFMIMKELGWLNTLTALIVP 140
Query 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209
GLF SAFGT+L+RQFF +LP +LEEAA LDGC+ +QIYWRI+LP S+P ++ L + +
Sbjct 141 GLF-SAFGTFLLRQFFMSLPKELEEAAKLDGCNHFQIYWRIMLPLSKPGLIALAIFVALW 199
Query 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEY--VARWPVLMAASMLMLVPLVILYAVAQR 267
WND +WPL++ L+ GL L GE+ + +P+LMA S+L + P++I++ Q+
Sbjct 200 SWNDLMWPLIVNSTPDKMPLSAGLAYLTGEHTNLTNYPILMAGSVLAIWPMIIVFIFLQK 259
Query 268 SFVRGIAVTG 277
FV GI +TG
Sbjct 260 HFVEGITLTG 269
>gi|332980746|ref|YP_004462187.1| CUT1 family carbohydrate ABC transporter membrane protein 2 [Mahella
australiensis 50-1 BON]
gi|332698424|gb|AEE95365.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Mahella australiensis 50-1 BON]
Length=276
Score = 236 bits (602), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/259 (46%), Positives = 169/259 (66%), Gaps = 3/259 (1%)
Query 22 LIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTV 79
L+ A + P +W +S SLK EV PT+F S W NY + PFW F N++
Sbjct 16 LMSGAVTMILPFLWMISTSLKPLNEVFTFPPTIFGSRIVWENYLRISERFPFWIFFLNSL 75
Query 80 LYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGW 139
+ V Q+ S+AG+ FARL+F+ RDTLF LYL T+M+P VT+IP +LMR G
Sbjct 76 KISSIVVCAQLITSSMAGFVFARLKFKFRDTLFALYLGTMMIPSQVTMIPNFLLMRFYGL 135
Query 140 VDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAV 199
VDT +A+I+P L S FGT+LMRQFF T+P +LEEAA +DGC+P+ IYWR+ LP S P++
Sbjct 136 VDTHYALILPALV-SPFGTFLMRQFFLTVPLELEEAAKIDGCTPFGIYWRVFLPLSGPSL 194
Query 200 LVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLV 259
LG+ T++ +WNDFL PL+ I S TL LGL ++G Y WP LMA + + ++P++
Sbjct 195 ATLGIFTFMGIWNDFLAPLVYINTQSKMTLPLGLASMQGMYSTDWPALMAGTCISILPVL 254
Query 260 ILYAVAQRSFVRGIAVTGL 278
I++ AQ F++G+ ++GL
Sbjct 255 IVFLAAQDMFIKGVTLSGL 273
>gi|229820149|ref|YP_002881675.1| binding-protein-dependent transport systems inner membrane component
[Beutenbergia cavernae DSM 12333]
gi|229566062|gb|ACQ79913.1| binding-protein-dependent transport systems inner membrane component
[Beutenbergia cavernae DSM 12333]
Length=284
Score = 230 bits (587), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/257 (46%), Positives = 174/257 (68%), Gaps = 3/257 (1%)
Query 26 AWCALFPIIWALSGSLKADGE-VTEP-TLFPSHPQWSNYREVFALMPFWRMFFNTVLYAG 83
A +FP +W + + K+ E + P T+ P+ +W +REVF ++PF+ NT L A
Sbjct 29 AVVMIFPFVWQVLTAFKSQAEAIAVPVTILPAEWRWDTFREVFTVLPFFDQLRNTALVAV 88
Query 84 CVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTP 143
T GQ+ CSLA YAFARL+F GR+ +F L+LS LMVP + ++PQ +M +G ++T
Sbjct 89 ARTLGQLLLCSLAAYAFARLRFPGRNVVFALFLSVLMVPSQLLILPQYEIMADLGLLNTI 148
Query 144 WAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLG 203
+I+PGLF SAFGT+L+RQFF T+P ++EEAA+LDG S +IYW I+LP RPA+ L
Sbjct 149 PVLILPGLF-SAFGTFLLRQFFMTIPNEIEEAALLDGASRLRIYWSIMLPLVRPALAALA 207
Query 204 VLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYA 263
V+T +N WND LWPL++ ++ ++ GL L+G++ +PVLMA S+L +P++++Y
Sbjct 208 VITLMNAWNDLLWPLVVNTDPTVMPISAGLTTLQGQFATNYPVLMAGSLLASLPMLVVYL 267
Query 264 VAQRSFVRGIAVTGLGG 280
V QR FV+GIA++G G
Sbjct 268 VLQRQFVQGIALSGTKG 284
>gi|220932893|ref|YP_002509801.1| binding-protein-dependent transport systems inner membrane component
[Halothermothrix orenii H 168]
gi|219994203|gb|ACL70806.1| binding-protein-dependent transport systems inner membrane component
[Halothermothrix orenii H 168]
Length=273
Score = 227 bits (579), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 119/270 (45%), Positives = 175/270 (65%), Gaps = 3/270 (1%)
Query 13 IRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMP 70
I + +Y L+ L+P IW + S K + ++ PTL P +Y ++ +P
Sbjct 5 INKILIYFILLFFLVITLYPFIWMVLTSFKIESDIVSYPPTLIPRTFTLKSYLNIWKSIP 64
Query 71 FWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQ 130
F R F NTV++A VT VFF S+A YAFAR+ F G+ LF+L L+TLMVP VT+IP
Sbjct 65 FVRFFINTVIFAVGVTVISVFFDSMAAYAFARINFPGKKFLFILVLATLMVPFQVTLIPV 124
Query 131 VILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRI 190
++ +GW+DT A+I+P +AFG +L+RQFF T+P +LE+AA +DGCS ++IYW I
Sbjct 125 FKILFNLGWLDTFLALIIPRA-SNAFGIFLLRQFFITIPGELEDAARIDGCSEFRIYWNI 183
Query 191 LLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAA 250
+LP S+PA+ L + ++ WNDFLWPL+M +++ TL +GL GE+V + +LMA
Sbjct 184 ILPLSKPALTTLAIFHFMYNWNDFLWPLVMTSSSTMRTLPVGLALFMGEHVIEYGLLMAG 243
Query 251 SMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
+ L L+P+V+ Y AQR F++GIA+TGL G
Sbjct 244 ATLALLPIVVAYLFAQRFFIKGIALTGLKG 273
>gi|219847654|ref|YP_002462087.1| binding-protein-dependent transport systems inner membrane component
[Chloroflexus aggregans DSM 9485]
gi|219541913|gb|ACL23651.1| binding-protein-dependent transport systems inner membrane component
[Chloroflexus aggregans DSM 9485]
Length=279
Score = 226 bits (575), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 129/279 (47%), Positives = 177/279 (64%), Gaps = 4/279 (1%)
Query 4 ADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSN 61
A+ I+ R + R LA YA L + +FP I+ L SLK EV + PTL+PS +W+N
Sbjct 2 ANVILRRPWERVLA-YAVLSVTGFVMVFPFIYMLLSSLKPSTEVVQVPPTLWPSEIRWTN 60
Query 62 YREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMV 121
Y EV ++P NTV+ V G V LAGYAFARL+F GRD LF YL+TLMV
Sbjct 61 YLEVLNIVPLGTQLINTVIVTVFVVLGWVITSVLAGYAFARLEFPGRDWLFGAYLATLMV 120
Query 122 PLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGC 181
P V ++P LM + GWVD A+I+P LF +A+GT+L+RQFF ++P DLE+AA++DG
Sbjct 121 PFAVLIVPMYRLMLVFGWVDRLEALIIPWLF-TAYGTFLLRQFFMSIPKDLEDAALIDGA 179
Query 182 SPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYV 241
S W I +RI LP +RPA+ L ++ WN FLWPL++I + +T GLV L+ Y
Sbjct 180 SHWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPTRKVVTQGLVDLQALYA 239
Query 242 ARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
AR ++MA S L ++P +I++ AQR F+ GIA +GL G
Sbjct 240 ARVDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAG 278
>gi|56965202|ref|YP_176934.1| sugar ABC transporter permease [Bacillus clausii KSM-K16]
gi|56911446|dbj|BAD65973.1| sugar ABC transporter permease [Bacillus clausii KSM-K16]
Length=269
Score = 225 bits (574), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 111/259 (43%), Positives = 171/259 (67%), Gaps = 3/259 (1%)
Query 22 LIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTV 79
LI A + P +W ++ SLK E + PT++P ++ N+ VF F R + NT+
Sbjct 10 LIAGAIMMVTPFLWMVTTSLKTYLESMQIPPTIWPETWRFDNFARVFESADFLRYYANTI 69
Query 80 LYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGW 139
T Q+F CS+A YAFARL F ++TLF+L LS LMVP+ V +IP L+ +GW
Sbjct 70 FITVLRTGAQLFLCSMAAYAFARLNFPFKNTLFLLMLSVLMVPMQVILIPNYALLAQLGW 129
Query 140 VDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAV 199
+DT +A+IVPG+F SAFG +L+RQFF +P +L+EAAI+DGC+ W IYWRI+LP+++PA+
Sbjct 130 IDTFYALIVPGMF-SAFGVFLLRQFFMGIPKELDEAAIMDGCTHWGIYWRIILPNAKPAL 188
Query 200 LVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLV 259
+ L + T + WNDFLWPL+M + L++G+ G+Y +P+LMAA+++ VP++
Sbjct 189 VALAIFTVLAAWNDFLWPLVMTNSADMRVLSVGIANFEGQYSTEYPLLMAAALMSTVPML 248
Query 260 ILYAVAQRSFVRGIAVTGL 278
+++ Q+ + GIA+ G+
Sbjct 249 LMFLFLQKHLIAGIALGGV 267
>gi|257067829|ref|YP_003154084.1| carbohydrate ABC transporter membrane protein [Brachybacterium
faecium DSM 4810]
gi|256558647|gb|ACU84494.1| carbohydrate ABC transporter membrane protein [Brachybacterium
faecium DSM 4810]
Length=291
Score = 224 bits (572), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 116/253 (46%), Positives = 163/253 (65%), Gaps = 3/253 (1%)
Query 30 LFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87
+FP +W +S SL EVT PT P PQW NY VF +PF F NT
Sbjct 40 IFPFLWQISMSLSTHAEVTSVTPTWLPDEPQWGNYPAVFEQVPFGNQFLNTAAVTVARVV 99
Query 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMI 147
GQ+ C+LAGYAFAR+ FRG++ LF L LS LMVP + +IPQ +++ +GW++T +
Sbjct 100 GQLLLCALAGYAFARMTFRGKNLLFALVLSILMVPYQIYLIPQYDIVQQLGWLNTVAGIA 159
Query 148 VPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTW 207
PG+F SAFGT+LMRQ F +P LEEAA LDG +PWQ +WRI+ P S PA+ + +LT
Sbjct 160 APGIF-SAFGTFLMRQHFMGMPRSLEEAARLDGANPWQTFWRIMFPLSGPALSAVAILTA 218
Query 208 VNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQR 267
+ WND +WPL++ + TL +GL L+G++ +PV+MAA+ + ++PL+IL+ V QR
Sbjct 219 LASWNDLMWPLIVATYDDRTTLAVGLASLQGQFTTDYPVMMAAAFMAMLPLMILFIVLQR 278
Query 268 SFVRGIAVTGLGG 280
V G+A +G+ G
Sbjct 279 RVVEGLAHSGMKG 291
>gi|313625520|gb|EFR95242.1| sugar ABC transporter, permease protein [Listeria innocua FSL
J1-023]
Length=282
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/251 (44%), Positives = 166/251 (67%), Gaps = 3/251 (1%)
Query 30 LFPIIWALSGSLK--ADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87
L P +W +S + K A V P P P +N+ +VF + P R N+V+ A T
Sbjct 31 LMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLLNSVVVAVVTTL 90
Query 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMI 147
GQ+ FCS+A YAFAR+ F GRD LF+LYL+T+MVP VT+IPQ ILM+ GW+D+ +I
Sbjct 91 GQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLI 150
Query 148 VPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTW 207
VP LF S FGT+L+RQ F +P +LEEAA +DG + + I+ +++LP ++P LG+LT+
Sbjct 151 VPALF-SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTF 209
Query 208 VNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQR 267
+ WN +LWPL++ +ATL LGL L+G Y + ++MA ++ ++P++ +Y AQ+
Sbjct 210 MQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQK 269
Query 268 SFVRGIAVTGL 278
F++G+A++G+
Sbjct 270 YFIQGMAMSGM 280
>gi|16799296|ref|NP_469564.1| hypothetical protein lin0219 [Listeria innocua Clip11262]
gi|16412638|emb|CAC95452.1| lin0219 [Listeria innocua Clip11262]
gi|313621101|gb|EFR92177.1| sugar ABC transporter, permease protein [Listeria innocua FSL
S4-378]
Length=282
Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/251 (44%), Positives = 166/251 (67%), Gaps = 3/251 (1%)
Query 30 LFPIIWALSGSLK--ADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87
L P +W +S + K A V P P P +N+ +VF + P R N+V+ A T
Sbjct 31 LMPFVWMISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTL 90
Query 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMI 147
GQ+ FCS+A YAFAR+ F GRD LF+LYL+T+MVP VT+IPQ ILM+ GW+D+ +I
Sbjct 91 GQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLI 150
Query 148 VPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTW 207
VP LF S FGT+L+RQ F +P +LEEAA +DG + + I+ +++LP ++P LG+LT+
Sbjct 151 VPALF-SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTF 209
Query 208 VNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQR 267
+ WN +LWPL++ +ATL LGL L+G Y + ++MA ++ ++P++ +Y AQ+
Sbjct 210 MQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQK 269
Query 268 SFVRGIAVTGL 278
F++G+A++G+
Sbjct 270 YFIQGMAMSGM 280
>gi|16802226|ref|NP_463711.1| hypothetical protein lmo0180 [Listeria monocytogenes EGD-e]
gi|47096173|ref|ZP_00233772.1| sugar ABC transporter, permease protein [Listeria monocytogenes
str. 1/2a F6854]
gi|224500367|ref|ZP_03668716.1| hypothetical protein LmonF1_12144 [Listeria monocytogenes Finland
1988]
18 more sequence titles
Length=282
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/251 (44%), Positives = 166/251 (67%), Gaps = 3/251 (1%)
Query 30 LFPIIWALSGSLK--ADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87
L P +W +S + K A V P P P +N+ +VF + P R N+V+ A T
Sbjct 31 LMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVIVAVVTTL 90
Query 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMI 147
GQ+ FCS+A YAFAR+ F GRD LF+LYL+T+MVP VT+IPQ ILM+ GW+D+ +I
Sbjct 91 GQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLI 150
Query 148 VPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTW 207
VP LF S FGT+L+RQ F +P +LEEAA +DG + + I+ +++LP ++P LG+LT+
Sbjct 151 VPALF-SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTF 209
Query 208 VNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQR 267
+ WN +LWPL++ +ATL LGL L+G Y + ++MA ++ ++P++ +Y AQ+
Sbjct 210 MQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQK 269
Query 268 SFVRGIAVTGL 278
F++G+A++G+
Sbjct 270 YFIQGMAMSGM 280
>gi|313611380|gb|EFR86076.1| sugar ABC transporter, permease protein [Listeria monocytogenes
FSL F2-208]
Length=287
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/251 (44%), Positives = 166/251 (67%), Gaps = 3/251 (1%)
Query 30 LFPIIWALSGSLK--ADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87
L P +W +S + K A V P P P +N+ +VF + P R N+V+ A T
Sbjct 36 LMPFVWMVSTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLINSVVVAVVTTL 95
Query 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMI 147
GQ+ FCS+A YAFAR+ F GRD LF+LYL+T+MVP VT+IPQ ILM+ GW+D+ +I
Sbjct 96 GQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLI 155
Query 148 VPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTW 207
VP LF S FGT+L+RQ F +P +LEEAA +DG + + I+ +++LP ++P LG+LT+
Sbjct 156 VPALF-SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTF 214
Query 208 VNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQR 267
+ WN +LWPL++ +ATL LGL L+G Y + ++MA ++ ++P++ +Y AQ+
Sbjct 215 MQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQK 274
Query 268 SFVRGIAVTGL 278
F++G+A++G+
Sbjct 275 YFIQGMAMSGM 285
>gi|289433528|ref|YP_003463400.1| sugar ABC transporter permease [Listeria seeligeri serovar 1/2b
str. SLCC3954]
gi|289169772|emb|CBH26308.1| sugar ABC transporter, permease protein [Listeria seeligeri serovar
1/2b str. SLCC3954]
gi|313635211|gb|EFS01515.1| sugar ABC transporter, permease protein [Listeria seeligeri FSL
N1-067]
gi|313639873|gb|EFS04581.1| sugar ABC transporter, permease protein [Listeria seeligeri FSL
S4-171]
Length=282
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 107/251 (43%), Positives = 166/251 (67%), Gaps = 3/251 (1%)
Query 30 LFPIIWALSGSLK--ADGEVTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTA 87
+ P IW +S + K A P P P +N+ +VF + P +R N+V+ A T
Sbjct 31 IMPFIWMISTAFKTGAANMTLPPQFIPEDPTTANFTQVFEMFPMFRFLINSVVVAVVTTL 90
Query 88 GQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMI 147
GQ+ FCS+A YAFAR+ F GRD LF+LYL+T+MVP VT+IPQ ILM+ GW+D+ +I
Sbjct 91 GQMLFCSMAAYAFARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLI 150
Query 148 VPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTW 207
VP LF S FGT+L+RQ F +P +LEEAA +DG + + I+ +++LP ++P LG+LT+
Sbjct 151 VPALF-SVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTF 209
Query 208 VNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQR 267
+ WN +LWPL++ +ATL LGL L+G Y + ++MA ++ ++P++ +Y AQ+
Sbjct 210 MQSWNSYLWPLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQK 269
Query 268 SFVRGIAVTGL 278
F++G+A++G+
Sbjct 270 YFIQGMAMSGM 280
>gi|23100877|ref|NP_694344.1| sugar binding-protein dependent transporter system permease [Oceanobacillus
iheyensis HTE831]
gi|22779111|dbj|BAC15378.1| sugar binding-protein dependent transporter system permease [Oceanobacillus
iheyensis HTE831]
Length=269
Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 110/268 (42%), Positives = 177/268 (67%), Gaps = 3/268 (1%)
Query 13 IRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMP 70
+R + ++ LI ++ + P +W + S K GE + PT+ PS ++NY VF +
Sbjct 1 MRSIGKHSVLIIGSFLMIIPFLWMVLTSFKTYGESMQVPPTILPSEWNFNNYVSVFQSVD 60
Query 71 FWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQ 130
F + + NT++ T GQ+F CSLA +AFARL+F G++ +F+L LS LMVPL V +IP
Sbjct 61 FLQYYINTLIVTVGRTLGQLFLCSLAAFAFARLEFPGKNIIFLLILSVLMVPLQVILIPN 120
Query 131 VILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRI 190
++ GWVDT +A+I+PG+F SAFG +L+RQFF +P +L++AA +DGCS + IYWRI
Sbjct 121 FGIITQFGWVDTFYALIIPGVF-SAFGVFLLRQFFMGIPKELDDAAKIDGCSYFGIYWRI 179
Query 191 LLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAA 250
+LP++ PA+ LG+ T + WNDFLWPL+M + L++G+ +G+Y +P+LMA
Sbjct 180 ILPNATPALTALGIFTILAAWNDFLWPLVMTNSEGMRVLSVGISNFQGQYSTDYPLLMAG 239
Query 251 SMLMLVPLVILYAVAQRSFVRGIAVTGL 278
++L +P+++++ Q+ + GIA+ G+
Sbjct 240 AVLSTIPMLLMFIFLQKYLLAGIALGGV 267
>gi|332981730|ref|YP_004463171.1| CUT1 family carbohydrate ABC transporter membrane protein 2 [Mahella
australiensis 50-1 BON]
gi|332699408|gb|AEE96349.1| carbohydrate ABC transporter membrane protein 2, CUT1 family
[Mahella australiensis 50-1 BON]
Length=292
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/270 (42%), Positives = 171/270 (64%), Gaps = 2/270 (0%)
Query 13 IRGLALYAGLIGIAWCALFPIIWALSGSLKADGEV--TEPTLFPSHPQWSNYREVFALMP 70
I + L+ LI + + P +W +S SLK G+V P P WSNY + +P
Sbjct 23 ISQIILHTILILGSAAMIIPFLWMISTSLKDFGQVFIIPPKWIPDPIMWSNYPNAWNALP 82
Query 71 FWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQ 130
F + N++ A V A Q+ S+A YAF++L+F+GRD LF ++L+T+M+P VT+IP
Sbjct 83 FGNAYLNSIKIAVIVVAVQLLTASMAAYAFSKLKFKGRDVLFTIFLATMMIPGQVTMIPT 142
Query 131 VILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRI 190
ILM+ +GW+DT +IVPG SAFG +L+RQF +LP +L+EAAI+DG + W IYWRI
Sbjct 143 FILMKYLGWIDTHLPLIVPGALFSAFGVFLLRQFMMSLPKELDEAAIMDGANHWTIYWRI 202
Query 191 LLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAA 250
LP PA+ LG+ T++ WN+F+ PL+ + T+ + L + +G+Y+ W ++MAA
Sbjct 203 SLPLIVPAMTALGIFTFMGTWNNFMGPLIYLNTPEKFTVPMLLNQFKGQYITDWTLMMAA 262
Query 251 SMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
S + +VP++I+Y + QR + GIA+TG+
Sbjct 263 SAIAIVPVLIIYLIGQRYIIEGIALTGMKA 292
>gi|163848226|ref|YP_001636270.1| binding-protein-dependent transport systems inner membrane component
[Chloroflexus aurantiacus J-10-fl]
gi|222526136|ref|YP_002570607.1| binding-protein-dependent transport systems inner membrane component
[Chloroflexus sp. Y-400-fl]
gi|163669515|gb|ABY35881.1| binding-protein-dependent transport systems inner membrane component
[Chloroflexus aurantiacus J-10-fl]
gi|222450015|gb|ACM54281.1| binding-protein-dependent transport systems inner membrane component
[Chloroflexus sp. Y-400-fl]
Length=279
Score = 223 bits (567), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 127/279 (46%), Positives = 175/279 (63%), Gaps = 4/279 (1%)
Query 4 ADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSN 61
A I+ R + R LA Y L + +FP I+ + SLK EV + PTL+PS +WSN
Sbjct 2 ASAILRRPWERLLA-YLVLSVTGFIMVFPFIYMVLSSLKPSTEVVQVPPTLWPSEIRWSN 60
Query 62 YREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMV 121
Y EV +++P NT++ V G VF LAGYAFARL F GR+ LF YL+TLMV
Sbjct 61 YLEVLSIVPLGTQLINTIIVTVLVVLGWVFTSVLAGYAFARLDFPGREWLFGAYLATLMV 120
Query 122 PLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGC 181
P V ++P LM + GWVD A+I+P LF +A+GT+L+RQFF ++P DLE+AA++DG
Sbjct 121 PFAVLIVPMYRLMLVFGWVDRLEALIIPWLF-TAYGTFLLRQFFMSVPKDLEDAALIDGA 179
Query 182 SPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYV 241
S W I +RI LP +RPA+ L ++ WN FLWPL++I +T GLV L+ Y
Sbjct 180 SHWGILFRIFLPLARPAIATLATFAFLYAWNSFLWPLIIISSPDRKVVTQGLVDLQALYA 239
Query 242 ARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
AR ++MA S L ++P +I++ AQR F+ GIA +GL G
Sbjct 240 ARVDLIMAGSTLAVLPTLIVFLFAQRYFIEGIATSGLAG 278
>gi|302385416|ref|YP_003821238.1| binding-protein-dependent transport systems inner membrane component
[Clostridium saccharolyticum WM1]
gi|302196044|gb|ADL03615.1| binding-protein-dependent transport systems inner membrane component
[Clostridium saccharolyticum WM1]
Length=275
Score = 222 bits (565), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 110/269 (41%), Positives = 169/269 (63%), Gaps = 3/269 (1%)
Query 14 RGLALYAGLIGIAWCALFPIIWALSGSLKADGE--VTEPTLFPSHPQWSNYREVFALMPF 71
+ L ++ LI +FP +W L S K GE PT+FP Y V +PF
Sbjct 8 KKLLIHMILIAGIGITVFPFLWMLFTSFKTKGESMAIPPTIFPQQFATEAYNNVLTALPF 67
Query 72 WRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQV 131
R++ NTV AGQV C+LA Y+FAR++F GRD LF++ LS LMVP + ++PQ
Sbjct 68 GRIYMNTVFSTVITVAGQVAICTLAAYSFARIKFPGRDILFLIVLSVLMVPGQIFLVPQY 127
Query 132 ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRIL 191
++++ +G +DT +A+ +P LF SAFGT++MRQFF +LP +LEEAAILDGCS +QI RI+
Sbjct 128 LIVQKIGLLDTLFALFLPNLF-SAFGTFMMRQFFLSLPDELEEAAILDGCSRFQILTRIM 186
Query 192 LPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAAS 251
+P + ++ L + T WNDF+WPL++ + TL L L+G++ +P MA +
Sbjct 187 VPLVKSGIVALVIFTAKFAWNDFMWPLIVNTSTTKMTLAPALSTLQGQHTNDYPAQMAGA 246
Query 252 MLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
+L ++P+++L+ + Q+ F+ G+A TG+ G
Sbjct 247 VLAVIPMIVLFFIFQKQFIEGVAHTGVKG 275
>gi|56962098|ref|YP_173821.1| sugar ABC transporter permease [Bacillus clausii KSM-K16]
gi|56908333|dbj|BAD62860.1| sugar ABC transporter permease [Bacillus clausii KSM-K16]
Length=310
Score = 221 bits (564), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 108/267 (41%), Positives = 177/267 (67%), Gaps = 2/267 (0%)
Query 16 LALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWR 73
L +Y L+ ++ + P +W +S S+K + + PTL+P+ ++NYREVF L+PF +
Sbjct 44 LMIYLMLVVLSILFILPFLWMVSTSIKTESQAISYPPTLWPAPFDFANYREVFELVPFLQ 103
Query 74 MFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVIL 133
+ NT++ G G V ++ YAFAR++ RGR F+L L T+M+P VT+IP ++
Sbjct 104 FYSNTIVVTGLTVIGTVASSAVVAYAFARIKGRGRSVWFILLLCTMMLPPQVTMIPVYLI 163
Query 134 MRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLP 193
+GWV+T ++VP G+AF +L+RQFFR +P +LEE+AI+DGCS + I+WRI++P
Sbjct 164 FTELGWVNTFLPLVVPAFLGNAFFIFLLRQFFRAIPKELEESAIIDGCSLFGIFWRIVVP 223
Query 194 HSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASML 253
S+PA++ + +L+++ WNDFL PL+ + TL LGL G+ +W +MAAS +
Sbjct 224 LSKPALITVAILSFMGSWNDFLTPLIYLNDIDKYTLALGLQMFNGQQTMQWGPMMAASTM 283
Query 254 MLVPLVILYAVAQRSFVRGIAVTGLGG 280
++ PLV+L+ +AQ+ F++GIA++G+ G
Sbjct 284 VIFPLVVLFFIAQKHFIQGIALSGIKG 310
>gi|239617424|ref|YP_002940746.1| binding-protein-dependent transport systems inner membrane component
[Kosmotoga olearia TBF 19.5.1]
gi|239506255|gb|ACR79742.1| binding-protein-dependent transport systems inner membrane component
[Kosmotoga olearia TBF 19.5.1]
Length=275
Score = 221 bits (564), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 105/272 (39%), Positives = 170/272 (63%), Gaps = 2/272 (0%)
Query 11 HFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFAL 68
+ +R + LY LI IA +FP W + SL+ V + P FPS P + NY+ +F+
Sbjct 4 NVLRKIFLYILLITIAIVMIFPFYWMVITSLQPLSAVYKYPPEFFPSQPTFDNYKTIFSR 63
Query 69 MPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVI 128
F + N++ A GQ+F CS+AG+AFAR++F+G++ F L L+T+MVP+ V +I
Sbjct 64 FNFLKFTLNSLFVATTAALGQLFTCSIAGFAFARMKFKGKELFFGLILATMMVPVEVVII 123
Query 129 PQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYW 188
P+ +LM+ GW+DT +IVP + G +LMR F+ +P +LEEAA++DG SP+++YW
Sbjct 124 PEFLLMKSFGWIDTYLPLIVPSFLVGSTGIFLMRSFYENVPMELEEAAVIDGASPFRVYW 183
Query 189 RILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLM 248
+ LP +R + L +++++ WND L PL+ + TL L L +GEY A+W L+
Sbjct 184 NVFLPLARTPLSALFIISFLINWNDLLRPLVYLNTREKFTLPLALASFQGEYSAQWNYLL 243
Query 249 AASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
A +++ ++P++I+Y + Q+ F+ GI TGL G
Sbjct 244 AGAVVSVIPILIVYLLMQKQFIEGITSTGLKG 275
>gi|336422189|ref|ZP_08602341.1| hypothetical protein HMPREF0993_01718 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336009099|gb|EGN39097.1| hypothetical protein HMPREF0993_01718 [Lachnospiraceae bacterium
5_1_57FAA]
Length=275
Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/274 (40%), Positives = 174/274 (64%), Gaps = 3/274 (1%)
Query 9 HRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVF 66
R + L ++ L+ +FP +W + S K GE + PT FP Y ++
Sbjct 3 SRSNTKKLFVHLALLFGVGVTVFPFLWMVLTSFKTVGEAMQIPPTFFPKQFLVDAYGQII 62
Query 67 ALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVT 126
+PF R++ NT++ T QV FCS+A YAFAR++F ++ +FVL LS LMVP +
Sbjct 63 TALPFARVYLNTIISTVVTTIVQVMFCSMAAYAFARIEFPFKNVIFVLILSVLMVPGQIF 122
Query 127 VIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQI 186
+IPQ +++ +G +DT A+ +P LF SAFGT+L+RQFF +LP +LEEAA LDGCS +QI
Sbjct 123 LIPQYQIIQKLGLLDTIPALFLPNLF-SAFGTFLLRQFFMSLPKELEEAAFLDGCSRYQI 181
Query 187 YWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPV 246
+W+I+LP ++P ++ L + T WNDF+WPL++ + TL L L+G+Y ++P+
Sbjct 182 FWKIMLPLTKPGIVSLVIFTAKFAWNDFMWPLIVNTSPKMMTLGPALSTLQGQYTTKYPM 241
Query 247 LMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
MA +++ ++P+++L+ + Q+ F+ G+A +G+ G
Sbjct 242 QMAGAVMAVIPIIVLFFIFQKQFIEGVAQSGIKG 275
>gi|167759284|ref|ZP_02431411.1| hypothetical protein CLOSCI_01631 [Clostridium scindens ATCC
35704]
gi|167663158|gb|EDS07288.1| hypothetical protein CLOSCI_01631 [Clostridium scindens ATCC
35704]
Length=275
Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/274 (40%), Positives = 173/274 (64%), Gaps = 3/274 (1%)
Query 9 HRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVF 66
R + L ++ L+ +FP +W + S K GE + PT FP Y ++
Sbjct 3 SRSNTKKLFVHLALLLGVGVTVFPFLWMVLTSFKTVGEAMQIPPTFFPKQFLVDAYGQII 62
Query 67 ALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVT 126
+PF R++ NT++ T QV FCS+A YAFAR++F ++ +FVL LS LMVP +
Sbjct 63 TALPFARVYLNTIISTVVTTIVQVMFCSMAAYAFARIEFPFKNVIFVLILSVLMVPGQIF 122
Query 127 VIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQI 186
+IPQ +++ +G +DT A+ +P LF SAFGT+L+RQFF +LP +LEEAA LDGCS +QI
Sbjct 123 LIPQYQIIQKLGLLDTIPALFLPNLF-SAFGTFLLRQFFMSLPKELEEAAFLDGCSRYQI 181
Query 187 YWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPV 246
+W+I+LP ++P ++ L + T WNDF+WPL++ + TL L L G+Y ++P+
Sbjct 182 FWKIMLPLTKPGIVSLVIFTAKFAWNDFMWPLIVNTSPKMMTLGPALSTLEGQYTTKYPM 241
Query 247 LMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
MA +++ ++P+++L+ + Q+ F+ G+A +G+ G
Sbjct 242 QMAGAVMAVIPIIVLFFIFQKQFIEGVAQSGIKG 275
>gi|227874441|ref|ZP_03992619.1| sugar ABC superfamily ATP binding cassette transporter, membrane
protein [Oribacterium sinus F0268]
gi|227839714|gb|EEJ50166.1| sugar ABC superfamily ATP binding cassette transporter, membrane
protein [Oribacterium sinus F0268]
Length=285
Score = 220 bits (560), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/281 (39%), Positives = 179/281 (64%), Gaps = 13/281 (4%)
Query 2 GWADRIVHRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQW 59
W +VH L L+AGL +FP +W + S K GE + PT+FP
Sbjct 16 SWKKLLVH------LVLFAGL----GVTIFPFLWMVLTSFKTSGEAMQIPPTIFPKKFIT 65
Query 60 SNYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTL 119
Y ++ + +PF R++FNT+L Q+ FC++AGYAFAR++F ++ +F+L LS L
Sbjct 66 VAYTQIVSSLPFARIYFNTILSTVITVVAQLLFCAMAGYAFARIKFPFKNLIFILLLSVL 125
Query 120 MVPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILD 179
MVP + +IPQ ++++ +G +D+ A+ +P LF SAFGT+LMRQFF +LP +LEEAAI+D
Sbjct 126 MVPGQIFLIPQYLIIQKMGLLDSIPALFIPNLF-SAFGTFLMRQFFLSLPEELEEAAIID 184
Query 180 GCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGE 239
GC+ +QI+ +I+LP +P ++ L + T+ WNDF+WPL++ L L L+G+
Sbjct 185 GCNRYQIFGKIMLPLVKPELVTLSIFTFKFAWNDFMWPLIVNTSPKNMILGPALSTLQGQ 244
Query 240 YVARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
Y ++P+ MA +++ ++P+++++ + Q+ F+ G+A +G+ G
Sbjct 245 YTTQYPMQMAGAVMAVIPVILIFFLFQKQFIEGVAQSGIKG 285
>gi|251794682|ref|YP_003009413.1| binding-protein-dependent transporters inner membrane component
[Paenibacillus sp. JDR-2]
gi|247542308|gb|ACS99326.1| binding-protein-dependent transport systems inner membrane component
[Paenibacillus sp. JDR-2]
Length=292
Score = 219 bits (558), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/269 (42%), Positives = 172/269 (64%), Gaps = 3/269 (1%)
Query 14 RGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTEPTL--FPSHPQWSNYREVFALMPF 71
R ALYA + +A + P +W LS S+K++ E+ + PSH WSNY +V+ +PF
Sbjct 25 RKTALYAVVTAVALSMVVPFLWMLSASVKSEAEIFSFPIQWIPSHFFWSNYSKVWTELPF 84
Query 72 WRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQV 131
+ + NT+ A T Q+ CS A YAFA+++F RD LF LY++T+MVP V +IPQ
Sbjct 85 FTYYLNTIKIAVLTTLLQIITCSTAAYAFAKVKFPERDKLFFLYVATMMVPYQVMMIPQF 144
Query 132 ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRIL 191
+L++ +G +D+ W++I+ G F S FG +L RQFF ++P +L EAA +DG S + IY RI+
Sbjct 145 VLIKKIGLMDSHWSLILLGAF-SPFGVFLFRQFFMSIPEELSEAARIDGLSEFGIYARII 203
Query 192 LPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAAS 251
LP RPA+ L + T+++ WNDFL PL+ + +SL TL LG+ + E+ + LMAA+
Sbjct 204 LPLIRPAIASLTIFTFMHSWNDFLGPLIYLNSDSLFTLQLGMQHFQTEHATEYGPLMAAA 263
Query 252 MLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
+ ++P +++Y +AQ FV GI+ + G
Sbjct 264 VCAIIPTIVIYFLAQDHFVEGISAGAVKG 292
>gi|256397004|ref|YP_003118568.1| binding-protein-dependent transporters inner membrane component
[Catenulispora acidiphila DSM 44928]
gi|256363230|gb|ACU76727.1| binding-protein-dependent transport systems inner membrane component
[Catenulispora acidiphila DSM 44928]
Length=271
Score = 218 bits (556), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 112/248 (46%), Positives = 168/248 (68%), Gaps = 4/248 (1%)
Query 32 PIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQ 89
P +W L SL+ GE T P PS QWSNY +VF F + F N+VL Q
Sbjct 24 PFLWQLITSLQTTGETTSVPPHFLPSW-QWSNYSQVFHDTKFAQQFLNSVLQTVVRVLAQ 82
Query 90 VFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVP 149
V FCS+A YAFARL+F GR+ LF++ L+ LMVP V ++PQ L++ +G ++T +++P
Sbjct 83 VLFCSMAAYAFARLRFPGRNALFLVMLAVLMVPSQVYLLPQYQLVQNLGLLNTLSGVVLP 142
Query 150 GLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVN 209
GLF SAFGT+++RQFF +LP ++EEAA LDG ++I+W ++LP ++P ++ +GVLT +
Sbjct 143 GLF-SAFGTFMLRQFFMSLPNEVEEAARLDGAGTFRIFWSVMLPLAKPGLISMGVLTVLW 201
Query 210 VWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSF 269
WND LWPL+++ ++ LT+GL L+GE++ +P+LMA S+L +P+++L+ AQR
Sbjct 202 SWNDLLWPLVVVNDDAKMPLTVGLSTLQGEHLTEYPLLMAGSLLASLPMILLFLAAQRRI 261
Query 270 VRGIAVTG 277
GIA+TG
Sbjct 262 TEGIALTG 269
>gi|333996267|ref|YP_004528880.1| sugar ABC transporter permease [Treponema azotonutricium ZAS-9]
gi|333737260|gb|AEF83209.1| sugar ABC transporter, permease protein [Treponema azotonutricium
ZAS-9]
Length=281
Score = 218 bits (555), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 116/269 (44%), Positives = 176/269 (66%), Gaps = 13/269 (4%)
Query 19 YAGLIGIAWCALFPIIWALSGSLKADGEVTEPTLFPSHPQW-------SNYREVFALMPF 71
Y + IA + P +W LS S K G+V +FP PQW NY E + L
Sbjct 19 YVFMTLIAVLMIVPFLWMLSTSFKEMGQVL---VFP--PQWIPKPFLLENYTEAWKLAKL 73
Query 72 WRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQV 131
F N+V+ T GQ+ CSLAG+AFARL+FRGR+ LF+LYL+T+M+P+ VT+IP
Sbjct 74 DLYFRNSVIITIFTTVGQIITCSLAGFAFARLEFRGRNALFLLYLATMMIPIQVTLIPLY 133
Query 132 ILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRIL 191
+LM+ GW++T +I+PG+F SA+GT+L+RQFF +P L+E+A++DGC ++IY I+
Sbjct 134 LLMKSFGWINTFAGIIMPGIF-SAWGTFLLRQFFMGIPKSLDESAVIDGCGYFRIYTTII 192
Query 192 LPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAAS 251
+P S+PA+ L V ++ WN+ LWPL++ +++ LT+GL +G++ W +LMA S
Sbjct 193 MPLSKPALATLSVFCFMWQWNNLLWPLVIANSDAIRPLTVGLQLFKGQFHIEWNLLMAGS 252
Query 252 MLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
M+ +VP+++LY Q+ FV GIA+TG+ G
Sbjct 253 MISVVPILVLYVFLQKYFVEGIALTGIKG 281
>gi|110803664|ref|YP_697806.1| ABC transporter permease [Clostridium perfringens SM101]
gi|169343077|ref|ZP_02864104.1| ABC transporter, permease protein [Clostridium perfringens C
str. JGS1495]
gi|296356|emb|CAA46887.1| unnamed protein product [Clostridium perfringens NCTC 8239]
gi|110684165|gb|ABG87535.1| ABC transporter, permease protein [Clostridium perfringens SM101]
gi|169298987|gb|EDS81061.1| ABC transporter, permease protein [Clostridium perfringens C
str. JGS1495]
Length=275
Score = 218 bits (554), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 105/261 (41%), Positives = 167/261 (64%), Gaps = 3/261 (1%)
Query 19 YAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFF 76
+ LI A + P +W + SLK GE T+ P +FPS P + NY EV L+PF + +
Sbjct 13 HGALICGALIMIVPFLWMVLTSLKTMGEATQVPPKIFPSKPMYENYSEVSRLLPFGKFYM 72
Query 77 NTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRI 136
NT++ G VFF ++A YAFARL F G+ F L L +M+P + ++PQ +L++
Sbjct 73 NTIIMLIFRVVGSVFFSAMAAYAFARLNFPGKKIFFALVLFQMMIPAQIFIVPQFLLVQK 132
Query 137 VGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSR 196
+G ++T A+++PG+ SAFGT+L+RQFF LP +LEEAA LDGC+ WQ +++++LP +R
Sbjct 133 LGLLNTISALVIPGIV-SAFGTFLLRQFFMGLPKELEEAAKLDGCNTWQTFYKVMLPLAR 191
Query 197 PAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLV 256
++ LG+ T + + D +WPL++ TL+ GL L+G++ +P LMA S+L +
Sbjct 192 SGLVALGIFTALFAFKDLMWPLVVNMSVDKMTLSAGLASLQGQFSTNYPQLMAGSVLAIW 251
Query 257 PLVILYAVAQRSFVRGIAVTG 277
P++I++ + QR F+ GIA +G
Sbjct 252 PMLIIFVIFQRKFIEGIATSG 272
>gi|284045433|ref|YP_003395773.1| binding-protein-dependent transporters inner membrane component
[Conexibacter woesei DSM 14684]
gi|283949654|gb|ADB52398.1| binding-protein-dependent transport systems inner membrane component
[Conexibacter woesei DSM 14684]
Length=274
Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/258 (42%), Positives = 170/258 (66%), Gaps = 3/258 (1%)
Query 25 IAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVFALMPFWRMFFNTVLYA 82
IA+ FP W LS SLK + EV + P L P+ PQWSNY +VF+ + F R N+++ A
Sbjct 18 IAFVMFFPFAWMLSASLKTNAEVLQYPPRLLPADPQWSNYLDVFSEVAFARYMLNSLIVA 77
Query 83 GCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDT 142
VTA + ++AGYA A L+FRGR+ +F+L L+T+MVP ++P + L + +GW+DT
Sbjct 78 VTVTAVALILHAMAGYALACLRFRGRNVVFMLILTTMMVPFYSLIVPLLQLTKELGWIDT 137
Query 143 PWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVL 202
MIVP + AFG +LMRQ++ + P +L EAA +DG P Q ++RI+LP S P + L
Sbjct 138 YQGMIVPWI-PHAFGIFLMRQYYMSFPKELREAATIDGLGPLQTFFRIVLPTSYPMLSAL 196
Query 203 GVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILY 262
G++ ++ W+ FLWPL++ + + T+ +GL++ +G+Y +W +LMAA+++ VP ++L+
Sbjct 197 GIIYFIGNWDRFLWPLIVTNSSDMWTVPIGLIQFQGQYTVKWNLLMAAAVIASVPTIVLF 256
Query 263 AVAQRSFVRGIAVTGLGG 280
V QR V G+ ++G+ G
Sbjct 257 VVLQRRIVEGVKMSGIKG 274
>gi|255029604|ref|ZP_05301555.1| hypothetical protein LmonL_11955 [Listeria monocytogenes LO28]
Length=234
Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/232 (44%), Positives = 157/232 (68%), Gaps = 1/232 (0%)
Query 47 VTEPTLFPSHPQWSNYREVFALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFR 106
V P P P +N+ +VF + P R N+V+ A T GQ+ FCS+A YAFAR+ F
Sbjct 2 VLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVIVAVVTTLGQMLFCSMAAYAFARIPFW 61
Query 107 GRDTLFVLYLSTLMVPLTVTVIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFR 166
GRD LF+LYL+T+MVP VT+IPQ ILM+ GW+D+ +IVP LF S FGT+L+RQ F
Sbjct 62 GRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALF-SVFGTFLLRQAFM 120
Query 167 TLPTDLEEAAILDGCSPWQIYWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSL 226
+P +LEEAA +DG + + I+ +++LP ++P LG+LT++ WN +LWPL++ +
Sbjct 121 GIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEM 180
Query 227 ATLTLGLVRLRGEYVARWPVLMAASMLMLVPLVILYAVAQRSFVRGIAVTGL 278
ATL LGL L+G Y + ++MA ++ ++P++ +Y AQ+ F++G+A++G+
Sbjct 181 ATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMAMSGM 232
>gi|157364148|ref|YP_001470915.1| binding-protein-dependent transport systems inner membrane component
[Thermotoga lettingae TMO]
gi|157314752|gb|ABV33851.1| binding-protein-dependent transport systems inner membrane component
[Thermotoga lettingae TMO]
Length=271
Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/271 (41%), Positives = 169/271 (63%), Gaps = 3/271 (1%)
Query 13 IRGLALYAGLIGIAWCALFPIIWALSGSLKA-DGEVTE--PTLFPSHPQWSNYREVFALM 69
++ + LY LI ++ + P +W S SLK+ + E+ P L P +SNY++V L
Sbjct 1 MKNIFLYLALILLSIIFIMPFMWMFSTSLKSGEDEIFSYPPKLLPETFNFSNYKKVLELF 60
Query 70 PFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVTVIP 129
P+ N+ + G T G V SLA +AFA L+F+GRD LF+L +ST+MVP T+IP
Sbjct 61 PWLTFLKNSAIITGLSTIGIVLSSSLAAFAFATLEFKGRDKLFILVISTMMVPYYTTLIP 120
Query 130 QVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQIYWR 189
Q IL +GW+DT + VP FGSA+ +L+RQFF+++P +L EAA +DGCS +QI+++
Sbjct 121 QYILFSKLGWIDTLKPLWVPSFFGSAYFIFLLRQFFKSIPKELFEAAKIDGCSIFQIFYK 180
Query 190 ILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPVLMA 249
I P ++PAV+ + +L +++ W DF PL+ +Q TL LGL RG Y W LMA
Sbjct 181 IYFPLAKPAVITVVILQFMSAWGDFFGPLIYLQSEEKYTLVLGLNAFRGMYYTSWHYLMA 240
Query 250 ASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
A+ ++ +P +I++A+ Q+ + GI +TG+
Sbjct 241 ATCMVTIPSLIVFALGQKHIIGGITITGMKS 271
>gi|229827633|ref|ZP_04453702.1| hypothetical protein GCWU000182_03022 [Abiotrophia defectiva
ATCC 49176]
gi|229788093|gb|EEP24207.1| hypothetical protein GCWU000182_03022 [Abiotrophia defectiva
ATCC 49176]
Length=275
Score = 216 bits (550), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 101/274 (37%), Positives = 177/274 (65%), Gaps = 3/274 (1%)
Query 9 HRHFIRGLALYAGLIGIAWCALFPIIWALSGSLKADGEVTE--PTLFPSHPQWSNYREVF 66
++ +R L ++ L+ +FP +W + S KA GE + PT+FP Y ++
Sbjct 3 NKQKLRKLIIHLILLSGIGVVIFPFLWMVLTSFKATGEAMQIPPTIFPKQFLIDAYTQII 62
Query 67 ALMPFWRMFFNTVLYAGCVTAGQVFFCSLAGYAFARLQFRGRDTLFVLYLSTLMVPLTVT 126
+ +PF +++ NT + T Q+ FC++AGYAFAR+ F ++ +FV+ LS LMVP +
Sbjct 63 SSLPFGQVYLNTFISTVVTTIAQLIFCAMAGYAFARIDFPFKNVIFVVLLSVLMVPGQIF 122
Query 127 VIPQVILMRIVGWVDTPWAMIVPGLFGSAFGTYLMRQFFRTLPTDLEEAAILDGCSPWQI 186
+IPQ ++++ + +D+ A+ +P LF SAFGT+L+RQFF +LP +LEEAA+LDGC+ +QI
Sbjct 123 LIPQYLIVQKMDLLDSIPALFIPNLF-SAFGTFLLRQFFMSLPKELEEAALLDGCNRFQI 181
Query 187 YWRILLPHSRPAVLVLGVLTWVNVWNDFLWPLLMIQRNSLATLTLGLVRLRGEYVARWPV 246
+ +I+LP +P ++ L + T WNDF+WPL++ TL L L+G+Y+ ++P+
Sbjct 182 FGKIMLPLVKPGLVSLAIFTAKFAWNDFMWPLIVNTSTKKMTLGPALSTLQGQYITQYPM 241
Query 247 LMAASMLMLVPLVILYAVAQRSFVRGIAVTGLGG 280
MA +++ ++P+++L+ + Q+ F+ G+A +G+ G
Sbjct 242 QMAGAVMAVIPIIVLFFIFQKQFIEGVAQSGIKG 275
Lambda K H
0.332 0.144 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 442782057568
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40