BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2053c
Length=175
Score E
Sequences producing significant alignments: (Bits) Value
gi|254232223|ref|ZP_04925550.1| hypothetical protein TBCG_02006 ... 328 2e-88
gi|15609190|ref|NP_216569.1| FxsA [Mycobacterium tuberculosis H3... 327 5e-88
gi|289754163|ref|ZP_06513541.1| conserved hypothetical protein [... 326 1e-87
gi|308374481|ref|ZP_07436207.2| FxsA cytoplasmic membrane protei... 218 2e-55
gi|118617791|ref|YP_906123.1| FxsA [Mycobacterium ulcerans Agy99... 185 3e-45
gi|240173214|ref|ZP_04751872.1| FxsA [Mycobacterium kansasii ATC... 184 5e-45
gi|183983032|ref|YP_001851323.1| hypothetical protein MMAR_3031 ... 183 7e-45
gi|254819613|ref|ZP_05224614.1| FxsA [Mycobacterium intracellula... 148 3e-34
gi|342859768|ref|ZP_08716421.1| phage T7 F exclusion suppressor ... 140 6e-32
gi|254775105|ref|ZP_05216621.1| FxsA [Mycobacterium avium subsp.... 140 7e-32
gi|41396254|gb|AAS04119.1| hypothetical protein MAP_1802c [Mycob... 136 9e-31
gi|161611204|ref|NP_960736.2| FxsA [Mycobacterium avium subsp. p... 136 1e-30
gi|118464471|ref|YP_881638.1| FxsA [Mycobacterium avium 104] >gi... 135 2e-30
gi|296165145|ref|ZP_06847694.1| FxsA cytoplasmic membrane protei... 132 2e-29
gi|118471226|ref|YP_888153.1| FxsA [Mycobacterium smegmatis str.... 115 3e-24
gi|308374480|ref|ZP_07436206.2| hypothetical protein TMFG_01007 ... 110 8e-23
gi|145223702|ref|YP_001134380.1| FxsA [Mycobacterium gilvum PYR-... 103 1e-20
gi|315444030|ref|YP_004076909.1| protein affecting phage T7 excl... 103 1e-20
gi|126435121|ref|YP_001070812.1| FxsA [Mycobacterium sp. JLS] >g... 94.4 5e-18
gi|108799467|ref|YP_639664.1| FxsA [Mycobacterium sp. MCS] >gi|1... 94.4 6e-18
gi|169629290|ref|YP_001702939.1| FxsA [Mycobacterium abscessus A... 94.0 7e-18
gi|262202409|ref|YP_003273617.1| FxsA cytoplasmic membrane prote... 86.7 1e-15
gi|333919725|ref|YP_004493306.1| hypothetical protein AS9A_2057 ... 78.6 4e-13
gi|333990744|ref|YP_004523358.1| FxsA [Mycobacterium sp. JDM601]... 76.3 2e-12
gi|325676780|ref|ZP_08156453.1| FxsA cytoplasmic membrane protei... 75.1 4e-12
gi|336325570|ref|YP_004605536.1| hypothetical protein CRES_1016 ... 71.6 4e-11
gi|120404394|ref|YP_954223.1| FxsA [Mycobacterium vanbaalenii PY... 69.3 2e-10
gi|343927917|ref|ZP_08767383.1| hypothetical protein GOALK_099_0... 68.2 5e-10
gi|331700309|ref|YP_004336548.1| FxsA cytoplasmic membrane prote... 67.0 1e-09
gi|312139767|ref|YP_004007103.1| integral membrane protein [Rhod... 65.9 2e-09
gi|326382303|ref|ZP_08203995.1| FxsA cytoplasmic membrane protei... 63.9 9e-09
gi|291005789|ref|ZP_06563762.1| FxsA cytoplasmic membrane protei... 63.9 9e-09
gi|134098853|ref|YP_001104514.1| FxsA cytoplasmic membrane prote... 63.2 1e-08
gi|226306618|ref|YP_002766578.1| hypothetical protein RER_31310 ... 63.2 1e-08
gi|84501204|ref|ZP_00999409.1| FxsA [Oceanicola batsensis HTCC25... 62.4 3e-08
gi|172040729|ref|YP_001800443.1| hypothetical protein cur_1049 [... 62.0 3e-08
gi|335041539|ref|ZP_08534566.1| FxsA cytoplasmic membrane protei... 61.6 4e-08
gi|89067416|ref|ZP_01154929.1| FxsA [Oceanicola granulosus HTCC2... 61.6 4e-08
gi|325001325|ref|ZP_08122437.1| hypothetical protein PseP1_21304... 61.2 6e-08
gi|339505599|ref|YP_004693019.1| cytoplasmic membrane protein Fx... 60.5 8e-08
gi|152984697|ref|YP_001350294.1| hypothetical protein PSPA7_4958... 60.1 1e-07
gi|110677836|ref|YP_680843.1| FxsA protein, putative [Roseobacte... 59.7 2e-07
gi|111017170|ref|YP_700142.1| hypothetical protein RHA1_ro00148 ... 59.3 2e-07
gi|49080502|gb|AAT50026.1| PA4387 [synthetic construct] 58.9 3e-07
gi|15599583|ref|NP_253077.1| FxsA [Pseudomonas aeruginosa PAO1] ... 58.9 3e-07
gi|21328723|gb|AAM48729.1| fxsA protein [uncultured marine prote... 57.4 7e-07
gi|84684637|ref|ZP_01012538.1| FxsA [Maritimibacter alkaliphilus... 57.0 1e-06
gi|334143496|ref|YP_004536652.1| FxsA cytoplasmic membrane prote... 56.6 1e-06
gi|254440077|ref|ZP_05053571.1| FxsA cytoplasmic membrane protei... 56.6 1e-06
gi|302531231|ref|ZP_07283573.1| predicted protein [Streptomyces ... 56.2 2e-06
>gi|254232223|ref|ZP_04925550.1| hypothetical protein TBCG_02006 [Mycobacterium tuberculosis C]
gi|254551080|ref|ZP_05141527.1| FxsA [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
gi|289745994|ref|ZP_06505372.1| FxsA [Mycobacterium tuberculosis 02_1987]
33 more sequence titles
Length=176
Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 175/175 (100%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS
Sbjct 2 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN
Sbjct 62 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 121
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 175
VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN
Sbjct 122 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 176
>gi|15609190|ref|NP_216569.1| FxsA [Mycobacterium tuberculosis H37Rv]
gi|31793236|ref|NP_855729.1| FxsA [Mycobacterium bovis AF2122/97]
gi|121637939|ref|YP_978162.1| FxsA [Mycobacterium bovis BCG str. Pasteur 1173P2]
37 more sequence titles
Length=175
Score = 327 bits (837), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 175/175 (100%), Gaps = 0/175 (0%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
+SRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS
Sbjct 1 MSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN
Sbjct 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 175
VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN
Sbjct 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 175
>gi|289754163|ref|ZP_06513541.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
gi|289694750|gb|EFD62179.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054]
Length=176
Score = 326 bits (835), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 174/175 (99%), Positives = 174/175 (99%), Gaps = 0/175 (0%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
VSRLLLSYAVVELAVVFALAATIGF WTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS
Sbjct 2 VSRLLLSYAVVELAVVFALAATIGFDWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN
Sbjct 62 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 121
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 175
VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN
Sbjct 122 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 176
>gi|308374481|ref|ZP_07436207.2| FxsA cytoplasmic membrane protein [Mycobacterium tuberculosis
SUMu006]
gi|308341744|gb|EFP30595.1| FxsA cytoplasmic membrane protein [Mycobacterium tuberculosis
SUMu006]
Length=142
Score = 218 bits (556), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/121 (100%), Positives = 121/121 (100%), Gaps = 0/121 (0%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS
Sbjct 22 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 81
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN
Sbjct 82 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 141
Query 121 V 121
V
Sbjct 142 V 142
>gi|118617791|ref|YP_906123.1| FxsA [Mycobacterium ulcerans Agy99]
gi|118569901|gb|ABL04652.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=210
Score = 185 bits (469), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 114/162 (71%), Positives = 122/162 (76%), Gaps = 2/162 (1%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V RL+L YAVVEL + L A IGF W +LVLLA+FVLG L AP+GGWQL R+L LRS
Sbjct 2 VGRLILIYAVVELMALIGLTAAIGFAWAVLVLLASFVLGLVLWAPMGGWQLSRQLGQLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GL EPRS LSDGALV VA+ LVLVPGLVTT GLLLL PPIRA ARPGLTAIAVRG LR
Sbjct 62 GLQEPRSVLSDGALVAVATGLVLVPGLVTTVFGLLLLAPPIRAAARPGLTAIAVRGLLRR 121
Query 121 VPLTADAAANMAGAFGESG--TDPDFIDGEVIDVIDVEPLTL 160
VPLT AAA+MA AF DFIDGEVIDVID EP TL
Sbjct 122 VPLTGAAAASMADAFNRRNAREQRDFIDGEVIDVIDGEPPTL 163
>gi|240173214|ref|ZP_04751872.1| FxsA [Mycobacterium kansasii ATCC 12478]
Length=176
Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 118/167 (71%), Positives = 129/167 (78%), Gaps = 2/167 (1%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
+ RLLL YAVVEL LAA IGFGW L+VLLATFVLG L AP+GGWQLGR L+ RS
Sbjct 2 LGRLLLIYAVVELMAFIGLAAAIGFGWALVVLLATFVLGLVLWAPMGGWQLGRHLMQWRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
G+ EPRSALSDGALV +A+ LVLVPGLVTT +GLLLL PPIRA+A PGLTAIA+RG LR
Sbjct 62 GVQEPRSALSDGALVALATGLVLVPGLVTTAVGLLLLAPPIRAVAGPGLTAIALRGILRR 121
Query 121 VPLTADAAANMAGAFG--ESGTDPDFIDGEVIDVIDVEPLTLQPPRV 165
VPLTA AAA MAGAF E DFIDGEVIDVID EP TL R+
Sbjct 122 VPLTATAAAGMAGAFTRREPPDQRDFIDGEVIDVIDGEPPTLPQARI 168
>gi|183983032|ref|YP_001851323.1| hypothetical protein MMAR_3031 [Mycobacterium marinum M]
gi|183176358|gb|ACC41468.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=210
Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 114/162 (71%), Positives = 122/162 (76%), Gaps = 2/162 (1%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V RL+L YAVVEL + L A IGF W +LVLLA+FVLG L AP+GGWQL R+L LRS
Sbjct 2 VGRLILIYAVVELMALIGLTAAIGFPWAVLVLLASFVLGLVLWAPMGGWQLSRQLGQLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GL EPRS LSDGALV VA+ LVLVPGLVTT GLLLL PPIRA ARPGLTAIAVRG LR
Sbjct 62 GLQEPRSVLSDGALVAVATGLVLVPGLVTTVFGLLLLAPPIRAAARPGLTAIAVRGLLRR 121
Query 121 VPLTADAAANMAGAFGESG--TDPDFIDGEVIDVIDVEPLTL 160
VPLT AAA+MA AF DFIDGEVIDVID EP TL
Sbjct 122 VPLTGAAAASMADAFNRRNAREQRDFIDGEVIDVIDGEPPTL 163
>gi|254819613|ref|ZP_05224614.1| FxsA [Mycobacterium intracellulare ATCC 13950]
Length=173
Score = 148 bits (374), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 96/167 (58%), Positives = 122/167 (74%), Gaps = 6/167 (3%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
VSRLLL YAVVELAV+FAL +TIG+GWTLL+LLATF+LG+G++AP+ G L RR+ LRS
Sbjct 2 VSRLLLVYAVVELAVIFALVSTIGWGWTLLMLLATFLLGWGIVAPMAGSHLIRRIGRLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
G A R A DGA+V+VA++LVL+PGLV+T +GLLLL+PP+R+ A PGL A+AVR R
Sbjct 62 GPAGSRDAAGDGAVVSVAALLVLMPGLVSTALGLLLLIPPVRSAAGPGLGAMAVRTLRRR 121
Query 121 VPLTADAAANMAGAF------GESGTDPDFIDGEVIDVIDVEPLTLQ 161
VP + A A + G+ D+IDGEVIDV DVEP+ Q
Sbjct 122 VPGISYATTFRADPYPAGPYPGDVRGHGDYIDGEVIDVKDVEPVRTQ 168
>gi|342859768|ref|ZP_08716421.1| phage T7 F exclusion suppressor FxsA [Mycobacterium colombiense
CECT 3035]
gi|342132900|gb|EGT86120.1| phage T7 F exclusion suppressor FxsA [Mycobacterium colombiense
CECT 3035]
Length=181
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 98/178 (56%), Positives = 129/178 (73%), Gaps = 19/178 (10%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
VSRLLL YAVVELAV+FAL +TIG+GWTLL L+ TF+LG+G++AP+ G L RR+ LRS
Sbjct 2 VSRLLLIYAVVELAVIFALVSTIGWGWTLLALVGTFLLGWGIVAPMAGSHLIRRIGQLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
G+ + R+A SDGALV++ ++LVLVPGLV+T +GL LL+PP+R+LA PGLTA+AVR R
Sbjct 62 GVTDQRAA-SDGALVSLVALLVLVPGLVSTALGLALLIPPVRSLAGPGLTALAVRKLQRQ 120
Query 121 VPLTADAAANMA---------GAFGESGTDP-----DFIDGEVIDVIDVEPLTLQPPR 164
+P + A+A A G + ++G+D D+IDGEVIDV DVE PPR
Sbjct 121 MPGLSYASAFRATPHPASYPGGFYSDAGSDAGYGRGDYIDGEVIDVHDVE----APPR 174
>gi|254775105|ref|ZP_05216621.1| FxsA [Mycobacterium avium subsp. avium ATCC 25291]
Length=171
Score = 140 bits (353), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 93/166 (57%), Positives = 119/166 (72%), Gaps = 8/166 (4%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V+RLLL YAVVELAV FAL +TIG+GWTLLVLLATF+LG+G++AP+ G QL RR+ LRS
Sbjct 2 VARLLLLYAVVELAVTFALVSTIGWGWTLLVLLATFLLGWGVVAPMAGSQLLRRIGQLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GL EPR+A DGAL+++A+ LVL+PGL++T +GL+L +PPIR A P LTA+ +R R+
Sbjct 62 GLTEPRAAAGDGALLSLATALVLIPGLLSTALGLMLFIPPIRGAAAPRLTALTLRTLQRH 121
Query 121 ---VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDV-EPLTLQP 162
P AA + G + D+IDGEVIDV DV P QP
Sbjct 122 APPYPTAFRAATDPRGPYEHR----DYIDGEVIDVHDVPAPARNQP 163
>gi|41396254|gb|AAS04119.1| hypothetical protein MAP_1802c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=191
Score = 136 bits (343), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 90/166 (55%), Positives = 118/166 (72%), Gaps = 8/166 (4%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V+RLLL YAVVELAV FAL +TIG+GWTLLVLLATF+LG+G++AP+ G QL RR+ LRS
Sbjct 22 VARLLLLYAVVELAVTFALVSTIGWGWTLLVLLATFLLGWGVVAPMAGSQLLRRIGQLRS 81
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GL EPR+A DGAL+++A+ LVL+PGL++T +GL+L +PP+R A P LTA+ +R R+
Sbjct 82 GLTEPRAAAGDGALISLATALVLIPGLLSTALGLMLFIPPVRGAAAPRLTALTLRTLQRH 141
Query 121 ---VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDV-EPLTLQP 162
P AA + G + D+IDGE IDV +V P QP
Sbjct 142 APPYPTAFRAATDPRGPYEHR----DYIDGEGIDVHEVPAPARNQP 183
>gi|161611204|ref|NP_960736.2| FxsA [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336462069|gb|EGO40914.1| protein affecting phage T7 exclusion by the F plasmid [Mycobacterium
avium subsp. paratuberculosis S397]
Length=171
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 90/166 (55%), Positives = 118/166 (72%), Gaps = 8/166 (4%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V+RLLL YAVVELAV FAL +TIG+GWTLLVLLATF+LG+G++AP+ G QL RR+ LRS
Sbjct 2 VARLLLLYAVVELAVTFALVSTIGWGWTLLVLLATFLLGWGVVAPMAGSQLLRRIGQLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GL EPR+A DGAL+++A+ LVL+PGL++T +GL+L +PP+R A P LTA+ +R R+
Sbjct 62 GLTEPRAAAGDGALISLATALVLIPGLLSTALGLMLFIPPVRGAAAPRLTALTLRTLQRH 121
Query 121 ---VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDV-EPLTLQP 162
P AA + G + D+IDGE IDV +V P QP
Sbjct 122 APPYPTAFRAATDPRGPYEHR----DYIDGEGIDVHEVPAPARNQP 163
>gi|118464471|ref|YP_881638.1| FxsA [Mycobacterium avium 104]
gi|118165758|gb|ABK66655.1| FxsA cytoplasmic membrane protein [Mycobacterium avium 104]
Length=171
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 91/166 (55%), Positives = 119/166 (72%), Gaps = 8/166 (4%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V+RLLL YAVVELAV FA+ +TIG+G TLLVLLATF+LG+G++AP+ G QL RR+ LRS
Sbjct 2 VARLLLLYAVVELAVTFAVVSTIGWGSTLLVLLATFLLGWGVVAPMAGSQLLRRIGQLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GL EPR+A DGAL++VA+ LVL+PGL++T +GL+L +PP+R A P LTA+ +R R+
Sbjct 62 GLTEPRAAAGDGALLSVATALVLIPGLLSTALGLMLFIPPVRGAAAPRLTALTLRTLQRH 121
Query 121 ---VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDV-EPLTLQP 162
P AA + G + + D+IDGEVIDV DV P QP
Sbjct 122 APPYPTAFRAATDPRGPYEQR----DYIDGEVIDVHDVPAPARNQP 163
>gi|296165145|ref|ZP_06847694.1| FxsA cytoplasmic membrane protein (suppressor of F exclusion
of phage T7) [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899489|gb|EFG78946.1| FxsA cytoplasmic membrane protein (suppressor of F exclusion
of phage T7) [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=187
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/180 (49%), Positives = 118/180 (66%), Gaps = 17/180 (9%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
+SRL YA VELA V AL +T+G+GWTLL L F+LG+ ++ P G L R++ LRS
Sbjct 2 LSRLFFVYAAVELAAVIALVSTVGWGWTLLALAGAFLLGWVVVVPAMGSHLVRQIGHLRS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
GLAEPR+A+ DG LVT+A+ LVLVPGLVTT +GLLLLV P+R+ PGL AIA+RG R
Sbjct 62 GLAEPRTAVRDGTLVTLAAALVLVPGLVTTALGLLLLVRPVRSAVGPGLAAIAMRGLRRR 121
Query 121 VPLTADAA-----------ANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEP 169
+PL AD + + + ++ +D ++IDGEV+DV D L+PP + EP
Sbjct 122 MPLLADTTLFAPRPGRARVGDYSDDYSDNYSD-NYIDGEVVDVRD-----LRPPALPDEP 175
>gi|118471226|ref|YP_888153.1| FxsA [Mycobacterium smegmatis str. MC2 155]
gi|118172513|gb|ABK73409.1| FxsA cytoplasmic membrane protein [Mycobacterium smegmatis str.
MC2 155]
Length=168
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/174 (48%), Positives = 104/174 (60%), Gaps = 20/174 (11%)
Query 2 SRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSG 61
RL L YA+VELAV+ L ATIGFGWT+L+LLA FV+G L G Q R+L L G
Sbjct 3 KRLFLVYALVELAVMVVLVATIGFGWTVLLLLAAFVVGLA----LAGSQARRQLRKLSGG 58
Query 62 L--AEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLR 119
L A + A++D LV + +VLV+VPGL ++ +G +LL+PP RA ARP LTA+A +
Sbjct 59 LTAASAQGAVTDSLLVALGTVLVVVPGLASSVLGAVLLLPPTRAAARPVLTAMAA----K 114
Query 120 NVPLTA--DAAANMAGAFGESGTDPDFIDGEVIDVID-------VEPLTLQPPR 164
VPL A+ G G D+IDGEVIDV D VEP L PP+
Sbjct 115 RVPLVTGFQTASRYQWTAGYPGGRGDYIDGEVIDVTDSADAAGGVEPHRL-PPK 167
>gi|308374480|ref|ZP_07436206.2| hypothetical protein TMFG_01007 [Mycobacterium tuberculosis SUMu006]
gi|308341788|gb|EFP30639.1| hypothetical protein TMFG_01007 [Mycobacterium tuberculosis SUMu006]
Length=55
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 54/55 (99%), Positives = 55/55 (100%), Gaps = 0/55 (0%)
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 175
+PLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN
Sbjct 1 MPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 55
>gi|145223702|ref|YP_001134380.1| FxsA [Mycobacterium gilvum PYR-GCK]
gi|145216188|gb|ABP45592.1| FxsA cytoplasmic membrane protein [Mycobacterium gilvum PYR-GCK]
Length=169
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/158 (48%), Positives = 101/158 (64%), Gaps = 11/158 (6%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGL 62
RL L YAV+ELAV+ AL +TIGFGWTLL++ FVLG L G QL R L LRSGL
Sbjct 4 RLFLLYAVIELAVLVALVSTIGFGWTLLLVAGAFVLGLAL----AGSQLRRHLRRLRSGL 59
Query 63 --AEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
A+ + A++D LV + +VLV++PGL ++ G LLL+PP RA ARP +TA+A R
Sbjct 60 TLADAQGAVTDSVLVALGTVLVVIPGLASSVFGALLLLPPTRAAARPLVTALAA----RR 115
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPL 158
PL + + A +G ++IDGEV++VID P+
Sbjct 116 TPLIVGVSTVGSAATRRAG-RAEYIDGEVVEVIDDVPV 152
>gi|315444030|ref|YP_004076909.1| protein affecting phage T7 exclusion by the F plasmid [Mycobacterium
sp. Spyr1]
gi|315262333|gb|ADT99074.1| protein affecting phage T7 exclusion by the F plasmid [Mycobacterium
sp. Spyr1]
Length=169
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/160 (48%), Positives = 100/160 (63%), Gaps = 15/160 (9%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGL 62
RL L YAV+ELAV+ AL +TIGFGWTLL++ FVLG L G QL R L LRSGL
Sbjct 4 RLFLLYAVIELAVLVALVSTIGFGWTLLLVAGAFVLGLAL----AGSQLRRHLRRLRSGL 59
Query 63 --AEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRG--FL 118
A+ + A++D LV + +VLV++PGL ++ G LLL+PP RA ARP +TA+A R +
Sbjct 60 TLADAQGAVTDSVLVALGTVLVVIPGLASSVFGALLLLPPTRAAARPLVTALAARRAPLI 119
Query 119 RNVPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPL 158
V AA AG ++IDGEV++VID P+
Sbjct 120 VGVSTVGSAATRRAG-------RAEYIDGEVVEVIDDVPV 152
>gi|126435121|ref|YP_001070812.1| FxsA [Mycobacterium sp. JLS]
gi|126234921|gb|ABN98321.1| FxsA cytoplasmic membrane protein [Mycobacterium sp. JLS]
Length=155
Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/148 (46%), Positives = 93/148 (63%), Gaps = 13/148 (8%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGL 62
RL L Y V+E+AV+ AL +T+G GW LL+ LATFVLG L G QL ++L LRSGL
Sbjct 2 RLFLLYVVIEVAVIVALVSTVGLGWALLISLATFVLGLAL----AGSQLKKQLRRLRSGL 57
Query 63 A--EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
+ A++DGALV + +VLV++PGL ++ +G LLL+PP R ARP +TA+A R R
Sbjct 58 TATTAQGAVTDGALVALGTVLVVLPGLASSVVGALLLLPPTRTAARPIVTALAARRLGRG 117
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGE 148
VP+ +A + D+IDGE
Sbjct 118 VPIVVLGSA-------AASRRRDYIDGE 138
>gi|108799467|ref|YP_639664.1| FxsA [Mycobacterium sp. MCS]
gi|119868580|ref|YP_938532.1| FxsA [Mycobacterium sp. KMS]
gi|108769886|gb|ABG08608.1| FxsA cytoplasmic membrane protein [Mycobacterium sp. MCS]
gi|119694669|gb|ABL91742.1| FxsA cytoplasmic membrane protein [Mycobacterium sp. KMS]
Length=155
Score = 94.4 bits (233), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/148 (46%), Positives = 93/148 (63%), Gaps = 13/148 (8%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGL 62
RL L Y V+E+AV+ AL +T+G GW LL+ LATFVLG L G QL ++L LRSGL
Sbjct 2 RLFLLYVVIEVAVIVALVSTVGLGWALLISLATFVLGLAL----AGSQLKKQLRRLRSGL 57
Query 63 AE--PRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
+ A++DGALV + +VLV++PGL ++ +G LLL+PP R ARP +TA+A R R
Sbjct 58 TATAAQGAVTDGALVALGTVLVVLPGLASSVVGALLLLPPTRTAARPIVTALAARRLGRG 117
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGE 148
VP+ +A + D+IDGE
Sbjct 118 VPIVVLGSA-------AASRRRDYIDGE 138
>gi|169629290|ref|YP_001702939.1| FxsA [Mycobacterium abscessus ATCC 19977]
gi|169241257|emb|CAM62285.1| Conserved hypothetical protein (FxsA cytoplasmic membrane protein?)
[Mycobacterium abscessus]
Length=170
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/154 (43%), Positives = 91/154 (60%), Gaps = 8/154 (5%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLA 63
L L Y +VE++ + AL +T+G GWT+L + FV+G L G Q R L LR G
Sbjct 5 LFLLYVIVEVSALVALTSTVGIGWTILAVAGAFVIGL----VLAGSQARRALGQLRRGGR 60
Query 64 EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPL 123
P A++DGAL+ + ++ V++PGLV++ +GLLLL+PP RA+ RP L +A R R PL
Sbjct 61 SPGGAIADGALIALGTIAVVIPGLVSSALGLLLLLPPTRAVLRPLLAFVAARQLSRRAPL 120
Query 124 TADAAANMAGAFGESGTDP---DFIDGEVIDVID 154
GA+ + P D+IDGEVIDV D
Sbjct 121 IGVIPTGY-GAYQRTAPRPTTVDYIDGEVIDVAD 153
>gi|262202409|ref|YP_003273617.1| FxsA cytoplasmic membrane protein [Gordonia bronchialis DSM 43247]
gi|262085756|gb|ACY21724.1| FxsA cytoplasmic membrane protein [Gordonia bronchialis DSM 43247]
Length=172
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 66/175 (38%), Positives = 91/175 (52%), Gaps = 15/175 (8%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLL-WLRS- 60
+ Y V ELA A+ T+GFGW +L+ LA +LG +L WQ GR++ LRS
Sbjct 5 HMFFVYVVAELAAFVAIGMTLGFGWAILISLAAGLLGLVILQ----WQ-GRKVFGQLRSA 59
Query 61 --GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFL 118
+P L+D AL VA+VL++VPG+V+T +G+L+L PP+R LARP + A+
Sbjct 60 SRNEVDPAGPLADSALFAVATVLLIVPGVVSTAVGVLMLAPPVRTLARPAIVAVGA---- 115
Query 119 RNVPLTADAAANMA-GAFGESGTDPDFIDGEVIDVIDVEPLTLQPPR-VAAEPPS 171
R V D A A G + D IDG V+D PP VA + P
Sbjct 116 RRVATAMDRAGVYATGVYRGGVAGGDVIDGTVVDSDPARTSRTSPPSGVAGQLPQ 170
>gi|333919725|ref|YP_004493306.1| hypothetical protein AS9A_2057 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481946|gb|AEF40506.1| hypothetical protein AS9A_2057 [Amycolicicoccus subflavus DQS3-9A1]
Length=210
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 58/172 (34%), Positives = 86/172 (50%), Gaps = 5/172 (2%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLA 63
+ L Y + E+ + LA +G WT+ V+L T +LGF L L R+L LR G
Sbjct 5 IFLLYVIAEVTALVLLAQAVGILWTVAVVLGTTLLGFMLFGMQTQSAL-RQLGALRDGKG 63
Query 64 EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPL 123
P A++D L+ +A +L+++PGLVTT +G+L+L PP RAL RP + +AVR +
Sbjct 64 SPAGAVTDTMLIAIAGLLLIIPGLVTTALGVLILFPPTRALIRPVIMLLAVRRYRVAAAS 123
Query 124 TADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPSPGSN 175
A M + + +DG V+ VE PP +A P S
Sbjct 124 GAAGWGTMRAYRSPADSRHGVVDGVVVSEETVE----DPPGRSAHRPGQYSE 171
>gi|333990744|ref|YP_004523358.1| FxsA [Mycobacterium sp. JDM601]
gi|333486712|gb|AEF36104.1| FxsA [Mycobacterium sp. JDM601]
Length=163
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/161 (43%), Positives = 88/161 (55%), Gaps = 14/161 (8%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
V R++L Y +VE A V AL IGFGWT L+LL F++G L A Q+ R++ LRS
Sbjct 5 VLRIVLIYVLVESAAVAALIWGIGFGWTALLLLGAFLVGLALSAG----QIKRQVARLRS 60
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
G + L+DG L+ ++LV+VPG VTT GL LL PP RA ARP L A G R
Sbjct 61 GAGQ--RVLADGGLIAAGTLLVVVPGPVTTLAGLALLAPPTRAAARPLLAGAAAAGLGRR 118
Query 121 VPLTADAAANMAG-----AFGESGTDPDFIDGEVIDVIDVE 156
PL AA + G A G D+ID E +DV +
Sbjct 119 TPLV---AATVVGRRWYTARRTPGRRTDYIDAEFVDVTETH 156
>gi|325676780|ref|ZP_08156453.1| FxsA cytoplasmic membrane protein (suppressor of F exclusion
of phage T7) [Rhodococcus equi ATCC 33707]
gi|325552328|gb|EGD22017.1| FxsA cytoplasmic membrane protein (suppressor of F exclusion
of phage T7) [Rhodococcus equi ATCC 33707]
Length=163
Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 62/158 (40%), Positives = 90/158 (57%), Gaps = 19/158 (12%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLL-----APLGGWQLGRRL 55
++ L + Y VVE+ V+ + +TIG WT+L+L+A +G L+ A + G++ R
Sbjct 2 IAALFVLYLVVEVGVLIWVGSTIGVLWTVLLLIAGSAVGMVLVKSQWRAVMAGFRRATR- 60
Query 56 LWLRSGLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVR 115
G P A++DGA+V SVL+ VPGLVT+ +GLL+L+PP R RP A+ +
Sbjct 61 -----GETSPTGAVADGAMVAAGSVLMFVPGLVTSVLGLLMLLPPTRWALRP--VAVLLA 113
Query 116 GFLRNVPLTA-DAAANMAGAFGESGTDPDFIDGEVIDV 152
G NV L + A+ AGA GT IDGEV+DV
Sbjct 114 GKRANVTLAGVEFASRTAGA--RRGT---VIDGEVVDV 146
>gi|336325570|ref|YP_004605536.1| hypothetical protein CRES_1016 [Corynebacterium resistens DSM
45100]
gi|336101552|gb|AEI09372.1| putative membrane protein [Corynebacterium resistens DSM 45100]
Length=190
Score = 71.6 bits (174), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/154 (36%), Positives = 81/154 (53%), Gaps = 8/154 (5%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGL 62
+ LL Y ++E AL IGFGW LLV+L F+LG + WQ+ +
Sbjct 42 QFLLGYLLIEFVTFIALGWAIGFGWALLVVLGLFILGIAVAM----WQMRSLATRVTQRT 97
Query 63 AEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVP 122
P + D AL V +VLV +PG+V++ +GLL L+PP R+L R ++A A R L+N
Sbjct 98 DRPGALTGDAALSCVGAVLVALPGIVSSVLGLLFLLPPTRSLLRRSISARAQRA-LQNFG 156
Query 123 LTADAAANMAGAFGESGTDPDFIDGEVIDVIDVE 156
++ + GA +S P + G+VID D E
Sbjct 157 GSSFITVSGFGA-PQSKDIPGW--GQVIDHRDDE 187
>gi|120404394|ref|YP_954223.1| FxsA [Mycobacterium vanbaalenii PYR-1]
gi|119957212|gb|ABM14217.1| FxsA cytoplasmic membrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=158
Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 75/165 (46%), Positives = 103/165 (63%), Gaps = 12/165 (7%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGL 62
RL L Y VVE+AVV ALA+TIGFGWT+L+L F+LG L QL R L L+SGL
Sbjct 2 RLFLIYVVVEMAVVVALASTIGFGWTVLLLAGAFLLGLALAGS----QLRRHLRRLQSGL 57
Query 63 --AEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
A+ + A++D LV + +VLV++PGL ++ +G LLL+PP RA ARP +TA+A R
Sbjct 58 TLADAQGAVTDSVLVALGTVLVVIPGLASSVLGALLLLPPTRAAARPMITAMAA----RR 113
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPRV 165
PL G+ D+IDGEV++V+DV P++ PR+
Sbjct 114 APLI--VGVTTVGSAAGRARRRDYIDGEVVEVVDVPPVSTDQPRL 156
>gi|343927917|ref|ZP_08767383.1| hypothetical protein GOALK_099_00490 [Gordonia alkanivorans NBRC
16433]
gi|343762140|dbj|GAA14309.1| hypothetical protein GOALK_099_00490 [Gordonia alkanivorans NBRC
16433]
Length=178
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/117 (39%), Positives = 72/117 (62%), Gaps = 9/117 (7%)
Query 3 RLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLL-WLR-- 59
R YA++E+A A+A +GFGW +L+ +A VLGF L WQ GR++ LR
Sbjct 4 RYFAVYALLEIAAFVAMAVWLGFGWAVLISIAAGVLGFLTLR----WQ-GRKVFGELRRA 58
Query 60 -SGLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVR 115
+ + R+ L+D ALV +++L+++PG+V+T G+LLL PP R + RP + A+ +
Sbjct 59 ANNEVDARAPLADTALVAASTILLVIPGVVSTLAGILLLFPPTRKVLRPVVVAVGAK 115
>gi|331700309|ref|YP_004336548.1| FxsA cytoplasmic membrane protein [Pseudonocardia dioxanivorans
CB1190]
gi|326954998|gb|AEA28695.1| FxsA cytoplasmic membrane protein [Pseudonocardia dioxanivorans
CB1190]
Length=206
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/111 (45%), Positives = 61/111 (55%), Gaps = 1/111 (0%)
Query 5 LLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAE 64
+L Y VVE+ + AL + IG G TLLVLLA ++G L A G + +
Sbjct 4 VLLYLVVEIVALVALGSWIGVGATLLVLLAGSIIGIAL-ARREGLRAAQAFSQAVRDRRV 62
Query 65 PRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVR 115
+ L+DG LV A VL+ VPGLVT GLLLLVPP+R L R L A R
Sbjct 63 AHAELTDGMLVAAAGVLIFVPGLVTDVAGLLLLVPPVRKLVRNRLVRAAER 113
>gi|312139767|ref|YP_004007103.1| integral membrane protein [Rhodococcus equi 103S]
gi|311889106|emb|CBH48419.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=163
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/140 (40%), Positives = 79/140 (57%), Gaps = 19/140 (13%)
Query 19 LAATIGFGWTLLVLLATFVLGFGLL-----APLGGWQLGRRLLWLRSGLAEPRSALSDGA 73
+ +TIG WT+L+L+A +G L+ A + G++ R G P A++DGA
Sbjct 20 VGSTIGVLWTVLLLIAGSAVGMVLVKSQWRAVMAGFRRATR------GETSPTGAVADGA 73
Query 74 LVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTA-DAAANMA 132
+V SVL+ VPGLVT+ +GLL+L+PP R RP A+ + G NV L + A+ A
Sbjct 74 MVAAGSVLMFVPGLVTSVLGLLMLLPPTRWALRP--VAVLLAGKRANVTLAGVEFASRTA 131
Query 133 GAFGESGTDPDFIDGEVIDV 152
GA GT IDGEV+DV
Sbjct 132 GA--RRGT---VIDGEVVDV 146
>gi|326382303|ref|ZP_08203995.1| FxsA cytoplasmic membrane protein [Gordonia neofelifaecis NRRL
B-59395]
gi|326199033|gb|EGD56215.1| FxsA cytoplasmic membrane protein [Gordonia neofelifaecis NRRL
B-59395]
Length=179
Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/152 (33%), Positives = 75/152 (50%), Gaps = 3/152 (1%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLA 63
+ + Y V E+A +A+ +GF W L+ + +G+ +LA LG +
Sbjct 4 VFVGYLVAEIAAFWAMVHFLGFAWAFLITVLAAGVGYIVLARRA-RDLGTDMRKAMRNEI 62
Query 64 EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVR--GFLRNV 121
P L+D AL VA+ L +VPG+V+T +GLL+L P R L RP +TA+A R + +
Sbjct 63 APGEPLTDSALFGVAATLTIVPGIVSTLVGLLMLTRPARKLLRPVVTALAARRATLMADR 122
Query 122 PLTADAAANMAGAFGESGTDPDFIDGEVIDVI 153
D AG G D++DG V V+
Sbjct 123 MTVIDFGGRPAGGRGFGFGTHDYVDGTVEGVV 154
>gi|291005789|ref|ZP_06563762.1| FxsA cytoplasmic membrane protein [Saccharopolyspora erythraea
NRRL 2338]
Length=207
Score = 63.9 bits (154), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 57/163 (35%), Positives = 77/163 (48%), Gaps = 13/163 (7%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLA 63
LLL A+VE++V+ A+ IG TL +L+ VLG L+ G L R +
Sbjct 6 LLLVAAIVEISVLVAIGQVIGVWPTLGLLVVAAVLGSWLVRREGRRTL-REINEAVRAKR 64
Query 64 EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLR---- 119
P +DGAL+ V +L+++PG V+ +GLL L PP RALAR + A R +
Sbjct 65 PPTREFADGALIAVGGILIILPGFVSDVLGLLCLFPPTRALARRRMQRAAERRSQQMQDQ 124
Query 120 --------NVPLTADAAANMAGAFGESGTDPDFIDGEVIDVID 154
TA AG SG D IDGEVI V +
Sbjct 125 VWLHTQRIRREQTAAGGGAAAGFGSRSGADDGVIDGEVISVTE 167
>gi|134098853|ref|YP_001104514.1| FxsA cytoplasmic membrane protein [Saccharopolyspora erythraea
NRRL 2338]
gi|133911476|emb|CAM01589.1| FxsA cytoplasmic membrane protein [Saccharopolyspora erythraea
NRRL 2338]
Length=202
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 56/163 (35%), Positives = 77/163 (48%), Gaps = 13/163 (7%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLA 63
+LL A+VE++V+ A+ IG TL +L+ VLG L+ G L R +
Sbjct 1 MLLVAAIVEISVLVAIGQVIGVWPTLGLLVVAAVLGSWLVRREGRRTL-REINEAVRAKR 59
Query 64 EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLR---- 119
P +DGAL+ V +L+++PG V+ +GLL L PP RALAR + A R +
Sbjct 60 PPTREFADGALIAVGGILIILPGFVSDVLGLLCLFPPTRALARRRMQRAAERRSQQMQDQ 119
Query 120 --------NVPLTADAAANMAGAFGESGTDPDFIDGEVIDVID 154
TA AG SG D IDGEVI V +
Sbjct 120 VWLHTQRIRREQTAAGGGAAAGFGSRSGADDGVIDGEVISVTE 162
>gi|226306618|ref|YP_002766578.1| hypothetical protein RER_31310 [Rhodococcus erythropolis PR4]
gi|229493579|ref|ZP_04387364.1| FxsA cytoplasmic membrane protein [Rhodococcus erythropolis SK121]
gi|226185735|dbj|BAH33839.1| conserved hypothetical membrane protein [Rhodococcus erythropolis
PR4]
gi|229319540|gb|EEN85376.1| FxsA cytoplasmic membrane protein [Rhodococcus erythropolis SK121]
Length=186
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/110 (40%), Positives = 62/110 (57%), Gaps = 7/110 (6%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRS 60
++ + L Y +VE+A + + IG WT+L+ LA ++G L+ Q R + R
Sbjct 2 IAAVFLLYVIVEIAALVIVGNAIGVAWTVLLFLAGSLVGLILMRS----QWRRVMDGFRK 57
Query 61 ---GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARP 107
G P A++DGALV S L+ VPGLVT+ +GLLLL+PP R RP
Sbjct 58 ATRGEGSPSLAVADGALVAAGSALMFVPGLVTSVLGLLLLIPPTRWALRP 107
>gi|84501204|ref|ZP_00999409.1| FxsA [Oceanicola batsensis HTCC2597]
gi|84390495|gb|EAQ02983.1| FxsA [Oceanicola batsensis HTCC2597]
Length=162
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/167 (33%), Positives = 79/167 (48%), Gaps = 26/167 (15%)
Query 10 VVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLG--RRLLWLRSGLAEPRS 67
++E+A+ + IG GWTLL++LAT +LG L+ G + RR S L +P
Sbjct 12 MIEIALFIQVGGFIGLGWTLLIVLATALLGTWLVRAQGRLAINNLRRSF---SELRDPTE 68
Query 68 ALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADA 127
L+D A++ +A L+L PG T +G LL PPIR A L RNV +
Sbjct 69 PLADAAMILLAGALLLTPGFFTDAVGFALLTPPIRHAAYLWLR--------RNVKVQ--- 117
Query 128 AANMAGAFGESGTDPDF---IDGEVIDVIDVEPLTLQPPRVAAEPPS 171
+F + G D+ GE +VID ++PP+ PS
Sbjct 118 ------SFSQEGPRQDYRRPHRGED-EVIDGTYHEVEPPKRPTHTPS 157
>gi|172040729|ref|YP_001800443.1| hypothetical protein cur_1049 [Corynebacterium urealyticum DSM
7109]
gi|171852033|emb|CAQ05009.1| putative membrane protein [Corynebacterium urealyticum DSM 7109]
Length=161
Score = 62.0 bits (149), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/159 (31%), Positives = 75/159 (48%), Gaps = 26/159 (16%)
Query 1 VSRLLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLR- 59
+ R Y VVEL L +GFGWT+L+ L F+LG + A WQ+ R+L +R
Sbjct 1 MRRSFFLYVVVELLAFVLLGKWLGFGWTILLYLGLFILGVAIAA----WQM--RVLTVRV 54
Query 60 -SGLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGL--------T 110
P D AL ++LV +PG+VT +G+L ++PP R+LAR + T
Sbjct 55 LRDRRSPGKLTGDAALSAFGALLVALPGVVTGVVGILFMLPPTRSLARRSMGTALRAKIT 114
Query 111 AIAVRGFL----------RNVPLTADAAANMAGAFGESG 139
+ F+ RN+P + + + FG+ G
Sbjct 115 RLGGESFIVSSRASDPQVRNIPGWGEVIDHRSEEFGDEG 153
>gi|335041539|ref|ZP_08534566.1| FxsA cytoplasmic membrane protein [Methylophaga aminisulfidivorans
MP]
gi|333788153|gb|EGL54035.1| FxsA cytoplasmic membrane protein [Methylophaga aminisulfidivorans
MP]
Length=157
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/154 (33%), Positives = 75/154 (49%), Gaps = 16/154 (10%)
Query 10 VVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAEPRSAL 69
+VE+ V+ + IG T+ +++AT VLG LL G L R L SG P + +
Sbjct 14 IVEIYVLIQVGDVIGALPTIFLVVATAVLGAFLLRLQGFQTLQRAQQSLASGQI-PATEM 72
Query 70 SDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADAAA 129
+G + +A ++L PG VT T+G LLL+P IR L ++ +N +
Sbjct 73 LEGVCLVIAGAMLLTPGFVTDTLGFLLLIPNIRRL--------VIKHMAKNRRIL--YTQ 122
Query 130 NMAGAFGESGTDPDF-----IDGEVIDVIDVEPL 158
N +GAF + D+ IDGEV+D D L
Sbjct 123 NRSGAFSQQRYRSDYREGDVIDGEVVDDDDKHHL 156
>gi|89067416|ref|ZP_01154929.1| FxsA [Oceanicola granulosus HTCC2516]
gi|89046985|gb|EAR53039.1| FxsA [Oceanicola granulosus HTCC2516]
Length=168
Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 53/175 (31%), Positives = 83/175 (48%), Gaps = 26/175 (14%)
Query 5 LLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAE 64
++ ++E+A+ + IG G TL++++ T +LG L+ G +LGR L L +
Sbjct 7 FIAVPLIEIALFIQVGGWIGLGPTLVIVVVTAILGTWLVRSQGAAELGRLKRSLNE-LND 65
Query 65 PRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNV--P 122
P L+ GA++ + L+L PG T +G LLLVP GF R V
Sbjct 66 PTEPLAHGAMILFSGALLLTPGFFTDAIGFLLLVP----------------GFRRRVMAQ 109
Query 123 LTADAAANMAGAFGESGTDPDFIDG------EVIDVIDVEPLTLQPPRVAAEPPS 171
+ A +A+ + +G+ G DP F G VID + + PPR +E PS
Sbjct 110 VRARMSAHASFTYGQRGADP-FAQGPGGPRRPSDRVIDADYEEVTPPRKPSEGPS 163
>gi|325001325|ref|ZP_08122437.1| hypothetical protein PseP1_21304 [Pseudonocardia sp. P1]
Length=192
Score = 61.2 bits (147), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 57/156 (37%), Positives = 74/156 (48%), Gaps = 16/156 (10%)
Query 16 VFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAEPRSALSDGALV 75
+ L A IG GWTLLVLLA VLG L G ++ G A +DG L+
Sbjct 29 IAGLIAWIGLGWTLLVLLAGSVLGLLLARSEGARAARALATAVQRGKLAHEEA-TDGLLI 87
Query 76 TVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADAAANMAGAF 135
+ VL+ VPGL+T +GL L+ PP RALAR + A A R AA + A
Sbjct 88 AIGGVLLFVPGLITDVLGLALVFPPTRALARRRMVAAAER-----------AAPGLRTAR 136
Query 136 GESGTDPDFIDGEVIDVIDVEPLTLQPPRVAAEPPS 171
G +DGE V+D + +T + R A PP
Sbjct 137 IRYGA--TVVDGET--VVDGDTVTEERRRPGAVPPR 168
>gi|339505599|ref|YP_004693019.1| cytoplasmic membrane protein FxsA [Roseobacter litoralis Och
149]
gi|338759592|gb|AEI96056.1| putative cytoplasmic membrane protein FxsA [Roseobacter litoralis
Och 149]
Length=163
Score = 60.5 bits (145), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 53/162 (33%), Positives = 78/162 (49%), Gaps = 14/162 (8%)
Query 5 LLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAE 64
L+ ++E+A+ + IG GWTL ++ T VLG L+ G LG+ + +
Sbjct 7 FLAIPLLEIALFIQIGGAIGLGWTLATVVITAVLGTFLVRNQGALALGQVKSSFNQ-MQD 65
Query 65 PRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLT 124
P L+ GA++ + L+L PG T T+G LLL+P +RA A AI R + +T
Sbjct 66 PTEPLAHGAMILFSGALLLTPGFFTDTIGFLLLIPGVRASA---FRAIKTR-----MNIT 117
Query 125 ADAAANMAGAFGESGT-DPD-FIDGEVIDVIDVEPLTLQPPR 164
AAN + G PD IDG D +V+P Q R
Sbjct 118 TFEAANRSHGPRHPGRGQPDNVIDG---DYTEVKPEADQNKR 156
>gi|152984697|ref|YP_001350294.1| hypothetical protein PSPA7_4958 [Pseudomonas aeruginosa PA7]
gi|150959855|gb|ABR81880.1| conserved hypothetical protein [Pseudomonas aeruginosa PA7]
Length=155
Score = 60.1 bits (144), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/141 (32%), Positives = 70/141 (50%), Gaps = 11/141 (7%)
Query 11 VELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLG---GWQLGRRLLWLRSGLAEPRS 67
VELAV+ + + IG GWTL +++A+ +G LL G W+ RL R L P
Sbjct 14 VELAVLIKVGSVIGVGWTLFLIVASAFIGAALLRVAGVATAWRARERL--ARGEL--PEE 69
Query 68 ALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADA 127
+ +G L+ V L+++PG ++ G+L L+P R L GL + LR D
Sbjct 70 EMLEGLLIAVGGGLLMLPGFISDIFGILCLIPFTRRLMLGGLRRRVEQQALRRRAFADDL 129
Query 128 AANMAGAFGESGTDPDFIDGE 148
A +G+ + P+ I+GE
Sbjct 130 DAR----YGQGASRPNVIEGE 146
>gi|110677836|ref|YP_680843.1| FxsA protein, putative [Roseobacter denitrificans OCh 114]
gi|109453952|gb|ABG30157.1| FxsA protein, putative [Roseobacter denitrificans OCh 114]
Length=163
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 11/150 (7%)
Query 5 LLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAE 64
L+ ++E+A+ + IG GWTL ++ T VLG L+ G LG+ + +
Sbjct 7 FLAIPLLEIALFIQIGGAIGLGWTLATVVVTAVLGTFLVRNQGALALGQVKSSFNQ-MQD 65
Query 65 PRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLT 124
P L+ GA++ + L+L PG T T+G LLL+P +RA A AI R V +
Sbjct 66 PTEPLAHGAMILFSGALLLTPGFFTDTIGFLLLIPAVRASA---FRAIKAR-----VSIA 117
Query 125 ADAAANMAGAFGE--SGTDPDFIDGEVIDV 152
+ AAN G D IDG+ +V
Sbjct 118 SFEAANHTHRPRRPGHGQPDDVIDGDYTEV 147
>gi|111017170|ref|YP_700142.1| hypothetical protein RHA1_ro00148 [Rhodococcus jostii RHA1]
gi|110816700|gb|ABG91984.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=168
Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/165 (39%), Positives = 83/165 (51%), Gaps = 19/165 (11%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLR---S 60
L L Y VVE+A + + IG WT+L+LL ++G L+ Q R + LR S
Sbjct 5 LFLLYVVVEIAALVLVGHAIGVLWTVLLLLGGTLIGLLLMRS----QWRRVMDGLRRAAS 60
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRN 120
G P +A++DGALV + S L+ VPGLVT+ +GLL LVPP R RP + +A R
Sbjct 61 GDGSPGAAVADGALVALGSALMFVPGLVTSVLGLLFLVPPTRWALRPVVVLLAGRRAATV 120
Query 121 VPLTADAAANMAGAFGESGTDPDFIDGEVID------VIDVEPLT 159
A GE I+GEV+D VID EP T
Sbjct 121 AAGAEAFARAPRRGRGE------VIEGEVVDEVFEGEVIDEEPRT 159
>gi|49080502|gb|AAT50026.1| PA4387 [synthetic construct]
Length=156
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/141 (32%), Positives = 70/141 (50%), Gaps = 11/141 (7%)
Query 11 VELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLG---GWQLGRRLLWLRSGLAEPRS 67
VELAV+ + + IG GWTL +++A+ +G LL G W+ RL R L P
Sbjct 14 VELAVLIKVGSVIGVGWTLFLIVASAFIGAALLRVAGVATAWRARERL--ARGEL--PEQ 69
Query 68 ALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADA 127
+ +G L+ V L+++PG ++ G+L L+P R L GL + LR D
Sbjct 70 EMLEGLLIAVGGGLLMLPGFISDIFGILCLIPFTRRLMLGGLRRRVEQQALRRRAFADDL 129
Query 128 AANMAGAFGESGTDPDFIDGE 148
A +G+ + P+ I+GE
Sbjct 130 NAR----YGQGPSRPNVIEGE 146
>gi|15599583|ref|NP_253077.1| FxsA [Pseudomonas aeruginosa PAO1]
gi|107100028|ref|ZP_01363946.1| hypothetical protein PaerPA_01001049 [Pseudomonas aeruginosa
PACS2]
gi|116052422|ref|YP_792733.1| FxsA [Pseudomonas aeruginosa UCBPP-PA14]
13 more sequence titles
Length=155
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/141 (32%), Positives = 70/141 (50%), Gaps = 11/141 (7%)
Query 11 VELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLG---GWQLGRRLLWLRSGLAEPRS 67
VELAV+ + + IG GWTL +++A+ +G LL G W+ RL R L P
Sbjct 14 VELAVLIKVGSVIGVGWTLFLIVASAFIGAALLRVAGVATAWRARERL--ARGEL--PEQ 69
Query 68 ALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADA 127
+ +G L+ V L+++PG ++ G+L L+P R L GL + LR D
Sbjct 70 EMLEGLLIAVGGGLLMLPGFISDIFGILCLIPFTRRLMLGGLRRRVEQQALRRRAFADDL 129
Query 128 AANMAGAFGESGTDPDFIDGE 148
A +G+ + P+ I+GE
Sbjct 130 NAR----YGQGPSRPNVIEGE 146
>gi|21328723|gb|AAM48729.1| fxsA protein [uncultured marine proteobacterium]
Length=152
Score = 57.4 bits (137), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/158 (31%), Positives = 73/158 (47%), Gaps = 17/158 (10%)
Query 3 RLLLSYAVV---ELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLR 59
RLL+++ V E+ + + IG TLL++L T + G L+ G Q+ L
Sbjct 2 RLLIAFIAVPLIEIGLFIQVGDAIGLWPTLLIVLLTAIAGTALVRS-QGTQVVHALQGSF 60
Query 60 SGLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLR 119
+ +P L+ GA++ A L+L PG T GLLLL PP R L +R L+
Sbjct 61 QAMQDPTEPLAHGAMILFAGALLLTPGFFTDAFGLLLLFPPFR-----NLITKMIRSKLK 115
Query 120 NVPLTADAAANMAGAFGESGTDPDFIDGEVIDVIDVEP 157
+A+M + E+G D ID E D+ + P
Sbjct 116 --------SADMKFSPQETGPDNTVIDAEYTDISEQNP 145
>gi|84684637|ref|ZP_01012538.1| FxsA [Maritimibacter alkaliphilus HTCC2654]
gi|84667616|gb|EAQ14085.1| FxsA [Rhodobacterales bacterium HTCC2654]
Length=164
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/155 (30%), Positives = 74/155 (48%), Gaps = 10/155 (6%)
Query 10 VVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAEPRSAL 69
+VE+ + + IG TLL++L T ++G ++ G LG+ + L++P L
Sbjct 12 LVEIGLFIQVGGLIGLWPTLLIVLVTAIIGSYMVRAQGAIALGQVRDSFKQ-LSDPSEPL 70
Query 70 SDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTAIAVRGFLRNVPLTADAAA 129
+ GA++ + L+L PG T T+G LLLVP +R A ++ R V +
Sbjct 71 AHGAMILFSGALLLTPGFFTDTVGFLLLVPAVRRWAFKQIS--------RRVQVNKSFTV 122
Query 130 NMAGAFGESGTDPDFIDGEVIDVIDVEPLTLQPPR 164
+ G + + D IDGE DV + T +P R
Sbjct 123 HSGGQ-THTYSSTDVIDGEYEDVSPPKKPTHEPTR 156
>gi|334143496|ref|YP_004536652.1| FxsA cytoplasmic membrane protein [Thioalkalimicrobium cyclicum
ALM1]
gi|333964407|gb|AEG31173.1| FxsA cytoplasmic membrane protein [Thioalkalimicrobium cyclicum
ALM1]
Length=181
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/119 (35%), Positives = 69/119 (58%), Gaps = 2/119 (1%)
Query 10 VVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLAEPRSAL 69
++EL ++ + + IG T+L+++AT LG G+L G QL ++ + P+ A
Sbjct 14 LIELYILIEVGSAIGALPTILIIIATAALG-GILMKYQGVQLVKQTQREMAQGHLPQQAA 72
Query 70 SDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRA-LARPGLTAIAVRGFLRNVPLTADA 127
+GAL+ + +++ +PGLVT +GLLLL+PP+RA +A+ L A R + T DA
Sbjct 73 LEGALIFIGGIILFLPGLVTDVIGLLLLLPPVRAKMAKLWLIRGAKRYASQQYHYTVDA 131
>gi|254440077|ref|ZP_05053571.1| FxsA cytoplasmic membrane protein [Octadecabacter antarcticus
307]
gi|198255523|gb|EDY79837.1| FxsA cytoplasmic membrane protein [Octadecabacter antarcticus
307]
Length=165
Score = 56.6 bits (135), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/149 (30%), Positives = 70/149 (47%), Gaps = 8/149 (5%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLR---S 60
L + ++E+ + + IG GWTL +++AT VLG ++ G R +L LR S
Sbjct 6 LFIGIPLLEITLFIQIGGAIGLGWTLAIVIATAVLGAWMVRSQGA----RAMLNLRTSFS 61
Query 61 GLAEPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALARPGLTA-IAVRGFLR 119
L +P L+ GA++ + L+L PG T +G LL+P +R+ L A I V+ F
Sbjct 62 SLQDPTEPLAHGAMILFSGALLLTPGFFTDFVGFALLIPAVRSAVYRNLRARINVQNFQM 121
Query 120 NVPLTADAAANMAGAFGESGTDPDFIDGE 148
+ N G D +F + E
Sbjct 122 GPDIQQPRPPNPRGQPHHRVIDGEFEEVE 150
>gi|302531231|ref|ZP_07283573.1| predicted protein [Streptomyces sp. AA4]
gi|302440126|gb|EFL11942.1| predicted protein [Streptomyces sp. AA4]
Length=155
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/103 (35%), Positives = 60/103 (59%), Gaps = 1/103 (0%)
Query 4 LLLSYAVVELAVVFALAATIGFGWTLLVLLATFVLGFGLLAPLGGWQLGRRLLWLRSGLA 63
+ L Y + E+A ++A+ + +G T+ +L+A +G L GG + + +SG
Sbjct 4 VFLLYVIAEVAAIWAVGSVVGVLGTIGLLIAGAFVGSWLARREGGKAMRAFMATAQSG-R 62
Query 64 EPRSALSDGALVTVASVLVLVPGLVTTTMGLLLLVPPIRALAR 106
P L+DG LV + VL++VPG V+ +GLL L+PP R++AR
Sbjct 63 NPEKELTDGMLVALGGVLIMVPGFVSDVLGLLFLLPPTRSIAR 105
Lambda K H
0.323 0.141 0.418
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 145800812160
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40