BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2055c
Length=88
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609192|ref|NP_216571.1| 30S ribosomal protein S18 [Mycobact... 178 3e-43
gi|289745992|ref|ZP_06505370.1| 30S ribosomal protein S18 rpsR2 ... 166 2e-39
gi|340627066|ref|YP_004745518.1| putative ribosomal protein S18 ... 148 3e-34
gi|41409865|ref|NP_962701.1| 30S ribosomal protein S18 [Mycobact... 120 1e-25
gi|254818912|ref|ZP_05223913.1| 30S ribosomal protein S18 [Mycob... 118 2e-25
gi|120406438|ref|YP_956267.1| 30S ribosomal protein S18 [Mycobac... 118 3e-25
gi|342859242|ref|ZP_08715896.1| 30S ribosomal protein S18 [Mycob... 117 7e-25
gi|118619879|ref|YP_908211.1| 30S ribosomal protein S18 [Mycobac... 115 2e-24
gi|315446363|ref|YP_004079242.1| 30S ribosomal protein S18P [Myc... 108 4e-22
gi|169627435|ref|YP_001701084.1| 30S ribosomal protein S18 [Myco... 106 1e-21
gi|145221901|ref|YP_001132579.1| ribosomal protein S18 [Mycobact... 102 2e-20
gi|296118271|ref|ZP_06836852.1| ribosomal protein S18 [Corynebac... 101 3e-20
gi|297572323|ref|YP_003698097.1| ribosomal protein S18 [Arcanoba... 100 8e-20
gi|237785093|ref|YP_002905798.1| 30S ribosomal protein S18 [Cory... 100 8e-20
gi|227504198|ref|ZP_03934247.1| 30S ribosomal protein S18 [Coryn... 100 1e-19
gi|118468979|ref|YP_890287.1| ribosomal protein S18 [Mycobacteri... 100 1e-19
gi|134097357|ref|YP_001103018.1| 30S ribosomal protein S18 [Sacc... 99.4 2e-19
gi|227501463|ref|ZP_03931512.1| 30S ribosomal protein S18 [Coryn... 99.4 2e-19
gi|256826412|ref|YP_003150372.1| 30S ribosomal protein S18 [Kyto... 99.4 2e-19
gi|269217871|ref|ZP_06161725.1| ribosomal protein S18 [Actinomyc... 99.4 2e-19
gi|319950955|ref|ZP_08024827.1| 30S ribosomal protein S18 [Dietz... 98.6 3e-19
gi|256374753|ref|YP_003098413.1| 30S ribosomal protein S18 [Acti... 98.2 3e-19
gi|291297665|ref|YP_003508943.1| 30S ribosomal protein S18 [Stac... 97.8 4e-19
gi|320095140|ref|ZP_08026848.1| 30S ribosomal protein S18 [Actin... 97.8 4e-19
gi|227832647|ref|YP_002834354.1| 30S ribosomal protein S18 [Cory... 97.8 4e-19
gi|154508266|ref|ZP_02043908.1| hypothetical protein ACTODO_0076... 97.4 5e-19
gi|300781695|ref|ZP_07091549.1| 30S ribosomal protein S18 [Coryn... 97.4 6e-19
gi|334563968|ref|ZP_08516959.1| 30S ribosomal protein S18 [Coryn... 97.4 7e-19
gi|298345837|ref|YP_003718524.1| putative 30S ribosomal protein ... 97.1 7e-19
gi|302870697|ref|YP_003839334.1| 30S ribosomal protein S18 [Micr... 97.1 7e-19
gi|227548279|ref|ZP_03978328.1| 30S ribosomal protein S18 [Coryn... 97.1 8e-19
gi|159040547|ref|YP_001539800.1| 30S ribosomal protein S18 [Sali... 96.7 1e-18
gi|145597063|ref|YP_001161360.1| 30S ribosomal protein S18 [Sali... 96.7 1e-18
gi|256833731|ref|YP_003162458.1| 30S ribosomal protein S18 [Jone... 96.7 1e-18
gi|332672266|ref|YP_004455274.1| 30S ribosomal protein S18 [Cell... 96.3 1e-18
gi|54026952|ref|YP_121194.1| 30S ribosomal protein S18 [Nocardia... 96.3 1e-18
gi|213966078|ref|ZP_03394266.1| ribosomal protein S18 [Corynebac... 96.3 1e-18
gi|336326221|ref|YP_004606187.1| 30S ribosomal protein S18 [Cory... 96.3 1e-18
gi|325003294|ref|ZP_08124406.1| 30S ribosomal protein S18 [Pseud... 96.3 1e-18
gi|337290320|ref|YP_004629341.1| 30S ribosomal protein S18 [Cory... 96.3 1e-18
gi|315605480|ref|ZP_07880518.1| 30S ribosomal protein S18 [Actin... 95.9 2e-18
gi|227487780|ref|ZP_03918096.1| 30S ribosomal protein S18 [Coryn... 95.9 2e-18
gi|300858072|ref|YP_003783055.1| 30S ribosomal protein S18 [Cory... 95.9 2e-18
gi|312138605|ref|YP_004005941.1| 30S ribosomal protein s18 rpsr ... 95.9 2e-18
gi|38233445|ref|NP_939212.1| 30S ribosomal protein S18 [Coryneba... 95.9 2e-18
gi|333921234|ref|YP_004494815.1| 30S ribosomal protein S18 [Amyc... 95.9 2e-18
gi|302538024|ref|ZP_07290366.1| ribosomal protein S18 [Streptomy... 95.9 2e-18
gi|340795040|ref|YP_004760503.1| 30S ribosomal protein S18 [Cory... 95.9 2e-18
gi|225023067|ref|ZP_03712259.1| hypothetical protein CORMATOL_03... 95.9 2e-18
gi|269958121|ref|YP_003327910.1| 30S ribosomal protein S18 [Xyla... 95.5 2e-18
>gi|15609192|ref|NP_216571.1| 30S ribosomal protein S18 [Mycobacterium tuberculosis H37Rv]
gi|15841544|ref|NP_336581.1| 30S ribosomal protein S18 [Mycobacterium tuberculosis CDC1551]
gi|31793238|ref|NP_855731.1| 30S ribosomal protein S18 [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=88
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 88/88 (100%), Positives = 88/88 (100%), Gaps = 0/88 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV
Sbjct 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
Query 61 AQAIKNAREMALLPYPGQDRQRRAALCP 88
AQAIKNAREMALLPYPGQDRQRRAALCP
Sbjct 61 AQAIKNAREMALLPYPGQDRQRRAALCP 88
>gi|289745992|ref|ZP_06505370.1| 30S ribosomal protein S18 rpsR2 [Mycobacterium tuberculosis 02_1987]
gi|289686520|gb|EFD54008.1| 30S ribosomal protein S18 rpsR2 [Mycobacterium tuberculosis 02_1987]
Length=90
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/81 (100%), Positives = 81/81 (100%), Gaps = 0/81 (0%)
Query 8 KGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNA 67
KGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNA
Sbjct 10 KGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNA 69
Query 68 REMALLPYPGQDRQRRAALCP 88
REMALLPYPGQDRQRRAALCP
Sbjct 70 REMALLPYPGQDRQRRAALCP 90
>gi|340627066|ref|YP_004745518.1| putative ribosomal protein S18 RpsR2 [Mycobacterium canettii
CIPT 140010059]
gi|340005256|emb|CCC44410.1| putative ribosomal protein S18 RpsR2 [Mycobacterium canettii
CIPT 140010059]
Length=89
Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/89 (97%), Positives = 86/89 (97%), Gaps = 1/89 (1%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV
Sbjct 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
Query 61 AQAIKNAREM-ALLPYPGQDRQRRAALCP 88
AQAIKNAREM LPYPGQDRQRRAALCP
Sbjct 61 AQAIKNAREMPPTLPYPGQDRQRRAALCP 89
>gi|41409865|ref|NP_962701.1| 30S ribosomal protein S18 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|59798950|sp|Q73TF1.1|RS182_MYCPA RecName: Full=30S ribosomal protein S18 2
gi|41398697|gb|AAS06317.1| RpsR2 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336460201|gb|EGO39105.1| ribosomal protein S18 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=88
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/65 (90%), Positives = 62/65 (96%), Gaps = 0/65 (0%)
Query 14 KKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMALL 73
KKNLLDSLG+ +VDYKDTATLRVFIS+RGKIRSR VTGL+VQQQRQVA AIKNAREMALL
Sbjct 20 KKNLLDSLGLRTVDYKDTATLRVFISERGKIRSRQVTGLSVQQQRQVATAIKNAREMALL 79
Query 74 PYPGQ 78
PYPGQ
Sbjct 80 PYPGQ 84
>gi|254818912|ref|ZP_05223913.1| 30S ribosomal protein S18 [Mycobacterium intracellulare ATCC
13950]
Length=87
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/84 (74%), Positives = 69/84 (83%), Gaps = 5/84 (5%)
Query 1 MAAKSARKGPT-----KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQ 55
MA K AR+ T K+NLLDSLG+ +VDYKDTATLRVFIS+RGKIRSR VTGL+VQ
Sbjct 1 MARKVARRRATAPAGRSPKRNLLDSLGLRTVDYKDTATLRVFISERGKIRSRQVTGLSVQ 60
Query 56 QQRQVAQAIKNAREMALLPYPGQD 79
QQRQVA AIKNAREMALLPYPG+
Sbjct 61 QQRQVAAAIKNAREMALLPYPGRH 84
>gi|120406438|ref|YP_956267.1| 30S ribosomal protein S18 [Mycobacterium vanbaalenii PYR-1]
gi|205556439|sp|A1TGG1.1|RS181_MYCVP RecName: Full=30S ribosomal protein S18 1
gi|119959256|gb|ABM16261.1| SSU ribosomal protein S18P [Mycobacterium vanbaalenii PYR-1]
Length=83
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/79 (71%), Positives = 64/79 (82%), Gaps = 0/79 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
M A+ P K ++NLL SLG+E VDYKDT+TLR FIS+RGKIRSR VTGLTVQQQRQV
Sbjct 1 MTARRREAAPAKKRRNLLKSLGIERVDYKDTSTLRQFISERGKIRSRSVTGLTVQQQRQV 60
Query 61 AQAIKNAREMALLPYPGQD 79
A+K AREMALLPYPGQ+
Sbjct 61 TTAVKTAREMALLPYPGQN 79
>gi|342859242|ref|ZP_08715896.1| 30S ribosomal protein S18 [Mycobacterium colombiense CECT 3035]
gi|342133483|gb|EGT86686.1| 30S ribosomal protein S18 [Mycobacterium colombiense CECT 3035]
Length=88
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/88 (70%), Positives = 68/88 (78%), Gaps = 6/88 (6%)
Query 1 MAAKSAR------KGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTV 54
MA KSAR K+NLL SLG+++VDYKDTATLRVFIS+RGKIRSR VTGL+V
Sbjct 1 MAGKSARTRRPAPPPGPSPKRNLLHSLGLDAVDYKDTATLRVFISERGKIRSRHVTGLSV 60
Query 55 QQQRQVAQAIKNAREMALLPYPGQDRQR 82
QQQRQVA AIK AREMALLPYPG+ R
Sbjct 61 QQQRQVATAIKTAREMALLPYPGRHSAR 88
>gi|118619879|ref|YP_908211.1| 30S ribosomal protein S18 [Mycobacterium ulcerans Agy99]
gi|183980320|ref|YP_001848611.1| ribosomal protein S18 RpsR2 [Mycobacterium marinum M]
gi|205556568|sp|B2HKQ1.1|RS182_MYCMM RecName: Full=30S ribosomal protein S18 2
gi|205556605|sp|A0PWM1.1|RS182_MYCUA RecName: Full=30S ribosomal protein S18 2
gi|118571989|gb|ABL06740.1| ribosomal protein S18 RpsR2 [Mycobacterium ulcerans Agy99]
gi|183173646|gb|ACC38756.1| ribosomal protein S18 RpsR2 [Mycobacterium marinum M]
Length=87
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/67 (84%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 11 TKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREM 70
T AKKNLLDSLGV VDYKD + LR FISDRGKIRSR VTGLTVQQQRQ+A AIKNAREM
Sbjct 17 TPAKKNLLDSLGVSEVDYKDISRLRTFISDRGKIRSRRVTGLTVQQQRQIATAIKNAREM 76
Query 71 ALLPYPG 77
ALLPYP
Sbjct 77 ALLPYPA 83
>gi|315446363|ref|YP_004079242.1| 30S ribosomal protein S18P [Mycobacterium sp. Spyr1]
gi|205562361|sp|A4T5Z8.2|RS182_MYCGI RecName: Full=30S ribosomal protein S18 2
gi|315264666|gb|ADU01408.1| SSU ribosomal protein S18P [Mycobacterium sp. Spyr1]
Length=79
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/67 (75%), Positives = 58/67 (87%), Gaps = 0/67 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
K ++N+ LG+E VDYKDT+TLR F+S+RGKIRSR VTGLTVQQQRQV A+KNAREMA
Sbjct 12 KKRRNMFAQLGIERVDYKDTSTLRQFLSERGKIRSRTVTGLTVQQQRQVTIAVKNAREMA 71
Query 72 LLPYPGQ 78
LLPYPGQ
Sbjct 72 LLPYPGQ 78
>gi|169627435|ref|YP_001701084.1| 30S ribosomal protein S18 [Mycobacterium abscessus ATCC 19977]
gi|169239402|emb|CAM60430.1| 30S ribosomal protein S18.2 [Mycobacterium abscessus]
Length=82
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/63 (83%), Positives = 55/63 (88%), Gaps = 0/63 (0%)
Query 13 AKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMAL 72
AK NL LGV SVDYKDT TLR+F+S+RGKIRSR VTGLTVQQQRQVA AIKNAREMAL
Sbjct 19 AKPNLFAKLGVSSVDYKDTNTLRMFLSERGKIRSRRVTGLTVQQQRQVANAIKNAREMAL 78
Query 73 LPY 75
LPY
Sbjct 79 LPY 81
>gi|145221901|ref|YP_001132579.1| ribosomal protein S18 [Mycobacterium gilvum PYR-GCK]
gi|145214387|gb|ABP43791.1| SSU ribosomal protein S18P [Mycobacterium gilvum PYR-GCK]
Length=63
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/62 (78%), Positives = 54/62 (88%), Gaps = 0/62 (0%)
Query 17 LLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMALLPYP 76
+ LG+E VDYKDT+TLR F+S+RGKIRSR VTGLTVQQQRQV A+KNAREMALLPYP
Sbjct 1 MFAQLGIERVDYKDTSTLRQFLSERGKIRSRTVTGLTVQQQRQVTIAVKNAREMALLPYP 60
Query 77 GQ 78
GQ
Sbjct 61 GQ 62
>gi|296118271|ref|ZP_06836852.1| ribosomal protein S18 [Corynebacterium ammoniagenes DSM 20306]
gi|295968829|gb|EFG82073.1| ribosomal protein S18 [Corynebacterium ammoniagenes DSM 20306]
Length=82
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/64 (77%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKDT TLR+FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAEGIEKVDYKDTKTLRLFISDRGKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|297572323|ref|YP_003698097.1| ribosomal protein S18 [Arcanobacterium haemolyticum DSM 20595]
gi|296932670|gb|ADH93478.1| ribosomal protein S18 [Arcanobacterium haemolyticum DSM 20595]
Length=78
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 49/69 (72%), Positives = 56/69 (82%), Gaps = 0/69 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
K K N L + +E VDYKDTATLR FISDRGKIRSR VTG+TVQ+QRQ+A+A+KNAREMA
Sbjct 10 KKKSNPLKAAKIEVVDYKDTATLRKFISDRGKIRSRRVTGVTVQEQRQIARAVKNAREMA 69
Query 72 LLPYPGQDR 80
LLPY R
Sbjct 70 LLPYTSSAR 78
>gi|237785093|ref|YP_002905798.1| 30S ribosomal protein S18 [Corynebacterium kroppenstedtii DSM
44385]
gi|259494804|sp|C4LHF0.1|RS18_CORK4 RecName: Full=30S ribosomal protein S18
gi|237758005|gb|ACR17255.1| 30S ribosomal protein S18 [Corynebacterium kroppenstedtii DSM
44385]
Length=82
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/74 (69%), Positives = 59/74 (80%), Gaps = 1/74 (1%)
Query 3 AKSARKGPTK-AKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVA 61
+K R PT+ KKN L + G+E+VDYKD TLR FIS+RGKIRSR VTGLT QQQRQVA
Sbjct 6 SKKVRVEPTRRPKKNPLKARGIEAVDYKDIETLRTFISERGKIRSRRVTGLTPQQQRQVA 65
Query 62 QAIKNAREMALLPY 75
A+KNAREMALLP+
Sbjct 66 TAVKNAREMALLPF 79
>gi|227504198|ref|ZP_03934247.1| 30S ribosomal protein S18 [Corynebacterium striatum ATCC 6940]
gi|227199242|gb|EEI79290.1| 30S ribosomal protein S18 [Corynebacterium striatum ATCC 6940]
Length=84
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYKD TLR+FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 18 RPKKNPLKAEGIETVDYKDVKTLRLFISDRGKIRSRRVTGLTPQQQRQVATAVKNAREMA 77
Query 72 LLPY 75
LLP+
Sbjct 78 LLPF 81
>gi|118468979|ref|YP_890287.1| ribosomal protein S18 [Mycobacterium smegmatis str. MC2 155]
gi|205556395|sp|A0R549.1|RS181_MYCS2 RecName: Full=30S ribosomal protein S18 1
gi|118170266|gb|ABK71162.1| ribosomal protein S18 [Mycobacterium smegmatis str. MC2 155]
Length=85
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 52/82 (64%), Positives = 61/82 (75%), Gaps = 5/82 (6%)
Query 1 MAAKSARKGPT-----KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQ 55
MA K +RK K ++N L++LGV ++DYKD A LR F+S+RGKIRSR VTGLT Q
Sbjct 2 MAVKKSRKRTAATELKKPRRNQLEALGVTTIDYKDVAVLRTFLSERGKIRSRHVTGLTPQ 61
Query 56 QQRQVAQAIKNAREMALLPYPG 77
QQRQVA AIKNAREMALLP G
Sbjct 62 QQRQVATAIKNAREMALLPMAG 83
>gi|134097357|ref|YP_001103018.1| 30S ribosomal protein S18 [Saccharopolyspora erythraea NRRL 2338]
gi|291009084|ref|ZP_06567057.1| 30S ribosomal protein S18 [Saccharopolyspora erythraea NRRL 2338]
gi|205556498|sp|A4F7R8.1|RS181_SACEN RecName: Full=30S ribosomal protein S18 1
gi|133909980|emb|CAM00092.1| 30S ribosomal protein S18 [Saccharopolyspora erythraea NRRL 2338]
Length=81
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/76 (68%), Positives = 57/76 (75%), Gaps = 0/76 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
M + R G + K NLL GV VD+KDT LR FISDRGKIRSR VTGLT+Q+QR+V
Sbjct 1 MRNEQRRGGQRRGKPNLLQRAGVVQVDWKDTDLLRRFISDRGKIRSRRVTGLTMQEQREV 60
Query 61 AQAIKNAREMALLPYP 76
A AIKNAREMALLPYP
Sbjct 61 ATAIKNAREMALLPYP 76
>gi|227501463|ref|ZP_03931512.1| 30S ribosomal protein S18 [Corynebacterium accolens ATCC 49725]
gi|255324827|ref|ZP_05365940.1| ribosomal protein S18 [Corynebacterium tuberculostearicum SK141]
gi|306835624|ref|ZP_07468633.1| 30S ribosomal protein S18 [Corynebacterium accolens ATCC 49726]
gi|311740881|ref|ZP_07714708.1| 30S ribosomal protein S18 [Corynebacterium pseudogenitalium ATCC
33035]
gi|227077488|gb|EEI15451.1| 30S ribosomal protein S18 [Corynebacterium accolens ATCC 49725]
gi|255298127|gb|EET77431.1| ribosomal protein S18 [Corynebacterium tuberculostearicum SK141]
gi|304568468|gb|EFM44024.1| 30S ribosomal protein S18 [Corynebacterium accolens ATCC 49726]
gi|311304401|gb|EFQ80477.1| 30S ribosomal protein S18 [Corynebacterium pseudogenitalium ATCC
33035]
Length=84
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 54/64 (85%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKDT TLR+FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 18 RPKKNPLKAEGIEKVDYKDTKTLRLFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 77
Query 72 LLPY 75
LLP+
Sbjct 78 LLPF 81
>gi|256826412|ref|YP_003150372.1| 30S ribosomal protein S18 [Kytococcus sedentarius DSM 20547]
gi|256689805|gb|ACV07607.1| SSU ribosomal protein S18P [Kytococcus sedentarius DSM 20547]
Length=81
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/71 (67%), Positives = 56/71 (79%), Gaps = 0/71 (0%)
Query 10 PTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNARE 69
P K K N L + VE +DYKDTA LR FISDRGKIR+R VTG++VQ+QRQ+A+A+KNARE
Sbjct 11 PVKKKANPLKAAKVEKIDYKDTALLRKFISDRGKIRARRVTGVSVQEQRQIAKAVKNARE 70
Query 70 MALLPYPGQDR 80
MALLPY R
Sbjct 71 MALLPYSSSAR 81
>gi|269217871|ref|ZP_06161725.1| ribosomal protein S18 [Actinomyces sp. oral taxon 848 str. F0332]
gi|269212806|gb|EEZ79146.1| ribosomal protein S18 [Actinomyces sp. oral taxon 848 str. F0332]
Length=78
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/69 (69%), Positives = 57/69 (83%), Gaps = 0/69 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
K K N L S +E++DYKDTATLR FISDRGKIR+R VTG+TVQ+QR++A+A+KNAREMA
Sbjct 10 KKKANPLKSAKIENIDYKDTATLRKFISDRGKIRARRVTGVTVQEQRKIARAVKNAREMA 69
Query 72 LLPYPGQDR 80
LLPY R
Sbjct 70 LLPYSSSAR 78
>gi|319950955|ref|ZP_08024827.1| 30S ribosomal protein S18 [Dietzia cinnamea P4]
gi|319435377|gb|EFV90625.1| 30S ribosomal protein S18 [Dietzia cinnamea P4]
Length=85
Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L G+E+VDYKD TLR FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 19 RPKKNPLKVAGIETVDYKDVNTLRTFISDRGKIRSRRVTGLTPQQQRQVAVAVKNAREMA 78
Query 72 LLPY 75
LLP+
Sbjct 79 LLPF 82
>gi|256374753|ref|YP_003098413.1| 30S ribosomal protein S18 [Actinosynnema mirum DSM 43827]
gi|255919056|gb|ACU34567.1| ribosomal protein S18 [Actinosynnema mirum DSM 43827]
Length=77
Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/65 (76%), Positives = 53/65 (82%), Gaps = 0/65 (0%)
Query 16 NLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMALLPY 75
NLL GVE VD+KD A LR F+SDRGKIRSR VTGLT QQQRQVA A+KNAREMALLPY
Sbjct 13 NLLRREGVELVDWKDAALLRKFLSDRGKIRSRRVTGLTPQQQRQVATAVKNAREMALLPY 72
Query 76 PGQDR 80
P + R
Sbjct 73 PAKGR 77
>gi|291297665|ref|YP_003508943.1| 30S ribosomal protein S18 [Stackebrandtia nassauensis DSM 44728]
gi|290566885|gb|ADD39850.1| ribosomal protein S18 [Stackebrandtia nassauensis DSM 44728]
Length=79
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/78 (65%), Positives = 59/78 (76%), Gaps = 0/78 (0%)
Query 3 AKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQ 62
AK+A K K N LD G+ +D+KDTA LR FISDRGKIR+R VTG+T QQQRQ+A+
Sbjct 2 AKAAPVRKPKKKSNPLDKEGITYIDFKDTALLRKFISDRGKIRARRVTGVTAQQQRQIAR 61
Query 63 AIKNAREMALLPYPGQDR 80
A+KNAREMALLPY Q R
Sbjct 62 AVKNAREMALLPYTSQAR 79
>gi|320095140|ref|ZP_08026848.1| 30S ribosomal protein S18 [Actinomyces sp. oral taxon 178 str.
F0338]
gi|319977922|gb|EFW09557.1| 30S ribosomal protein S18 [Actinomyces sp. oral taxon 178 str.
F0338]
Length=80
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/80 (60%), Positives = 58/80 (73%), Gaps = 0/80 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA R P K K N L S +E +DYKDTA LR FISDRGKIR+R VTG++ Q+QR++
Sbjct 1 MAKPQLRNKPIKKKANPLKSAKIEKIDYKDTALLRKFISDRGKIRARRVTGVSTQEQRKI 60
Query 61 AQAIKNAREMALLPYPGQDR 80
A+A+KNAREMALLPY R
Sbjct 61 ARAVKNAREMALLPYSSTGR 80
>gi|227832647|ref|YP_002834354.1| 30S ribosomal protein S18 [Corynebacterium aurimucosum ATCC 700975]
gi|262182868|ref|ZP_06042289.1| 30S ribosomal protein S18 [Corynebacterium aurimucosum ATCC 700975]
gi|227453663|gb|ACP32416.1| 30S ribosomal protein S18 [Corynebacterium aurimucosum ATCC 700975]
Length=84
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 54/64 (85%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYK+ TLR+FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 18 RPKKNPLKAEGIEKVDYKEIKTLRLFISDRGKIRSRRVTGLTPQQQRQVATAVKNAREMA 77
Query 72 LLPY 75
LLP+
Sbjct 78 LLPF 81
>gi|154508266|ref|ZP_02043908.1| hypothetical protein ACTODO_00762 [Actinomyces odontolyticus
ATCC 17982]
gi|293191178|ref|ZP_06609111.1| ribosomal protein S18 [Actinomyces odontolyticus F0309]
gi|153797900|gb|EDN80320.1| hypothetical protein ACTODO_00762 [Actinomyces odontolyticus
ATCC 17982]
gi|292820599|gb|EFF79568.1| ribosomal protein S18 [Actinomyces odontolyticus F0309]
Length=80
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/75 (63%), Positives = 57/75 (76%), Gaps = 0/75 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA R P K K N L S +E +DYKDTA LR FISDRGKIR+R VTG++ Q+QR++
Sbjct 1 MAKPQLRNKPIKKKANPLKSAKIEKIDYKDTALLRKFISDRGKIRARRVTGVSTQEQRKI 60
Query 61 AQAIKNAREMALLPY 75
A+A+KNAREMALLPY
Sbjct 61 ARAVKNAREMALLPY 75
>gi|300781695|ref|ZP_07091549.1| 30S ribosomal protein S18 [Corynebacterium genitalium ATCC 33030]
gi|300533402|gb|EFK54463.1| 30S ribosomal protein S18 [Corynebacterium genitalium ATCC 33030]
Length=82
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 54/64 (85%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYKD TLR+FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAKGIEAVDYKDIETLRLFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|334563968|ref|ZP_08516959.1| 30S ribosomal protein S18 [Corynebacterium bovis DSM 20582]
Length=82
Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 54/64 (85%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYK+ A LR FISDRGKIRSR VTGLT QQQRQVA AIKNAREMA
Sbjct 16 RPKKNPLKAEGIETVDYKNHALLRKFISDRGKIRSRRVTGLTPQQQRQVATAIKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|298345837|ref|YP_003718524.1| putative 30S ribosomal protein S18 [Mobiluncus curtisii ATCC
43063]
gi|304390460|ref|ZP_07372413.1| 30S ribosomal protein S18 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315654410|ref|ZP_07907318.1| ribosomal protein S18 [Mobiluncus curtisii ATCC 51333]
gi|315657668|ref|ZP_07910550.1| ribosomal protein S18 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|298235898|gb|ADI67030.1| possible 30S ribosomal protein S18 [Mobiluncus curtisii ATCC
43063]
gi|304326216|gb|EFL93461.1| 30S ribosomal protein S18 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|315491445|gb|EFU81062.1| ribosomal protein S18 [Mobiluncus curtisii ATCC 51333]
gi|315492140|gb|EFU81749.1| ribosomal protein S18 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length=81
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/71 (67%), Positives = 57/71 (81%), Gaps = 0/71 (0%)
Query 10 PTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNARE 69
P K K N L + V ++DYKDTA LR FISDRGKIR+R VTG++VQ+QRQ+A+A+KNARE
Sbjct 11 PIKKKTNPLKAQKVGNIDYKDTALLRKFISDRGKIRARRVTGVSVQEQRQIAKAVKNARE 70
Query 70 MALLPYPGQDR 80
MALLPY G R
Sbjct 71 MALLPYSGSGR 81
>gi|302870697|ref|YP_003839334.1| 30S ribosomal protein S18 [Micromonospora aurantiaca ATCC 27029]
gi|315506934|ref|YP_004085821.1| 30S ribosomal protein S18 [Micromonospora sp. L5]
gi|302573556|gb|ADL49758.1| ribosomal protein S18 [Micromonospora aurantiaca ATCC 27029]
gi|315413553|gb|ADU11670.1| ribosomal protein S18 [Micromonospora sp. L5]
Length=79
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/80 (64%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA +A + P K K N LD G+ +DYKDTA LR FISDRGKIR+R VTG+T QQQRQ+
Sbjct 1 MAKAAALRKPKK-KVNPLDKDGITYIDYKDTALLRKFISDRGKIRARRVTGVTSQQQRQI 59
Query 61 AQAIKNAREMALLPYPGQDR 80
A+A+KNAREMALLPY R
Sbjct 60 ARAVKNAREMALLPYTATTR 79
>gi|227548279|ref|ZP_03978328.1| 30S ribosomal protein S18 [Corynebacterium lipophiloflavum DSM
44291]
gi|227079597|gb|EEI17560.1| 30S ribosomal protein S18 [Corynebacterium lipophiloflavum DSM
44291]
Length=83
Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKD TLR+FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 17 RPKKNPLKAEGIEKVDYKDVKTLRLFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 76
Query 72 LLPY 75
LLP+
Sbjct 77 LLPF 80
>gi|159040547|ref|YP_001539800.1| 30S ribosomal protein S18 [Salinispora arenicola CNS-205]
gi|238061877|ref|ZP_04606586.1| 30S ribosomal protein S18 [Micromonospora sp. ATCC 39149]
gi|330470800|ref|YP_004408543.1| 30S ribosomal protein S18 [Verrucosispora maris AB-18-032]
gi|205617156|sp|A8LXG1.1|RS18_SALAI RecName: Full=30S ribosomal protein S18
gi|157919382|gb|ABW00810.1| ribosomal protein S18 [Salinispora arenicola CNS-205]
gi|237883688|gb|EEP72516.1| 30S ribosomal protein S18 [Micromonospora sp. ATCC 39149]
gi|328813771|gb|AEB47943.1| 30S ribosomal protein S18 [Verrucosispora maris AB-18-032]
Length=79
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/80 (64%), Positives = 60/80 (75%), Gaps = 1/80 (1%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA +A + P K K N LD G+ +DYKDTA LR FISDRGKIR+R VTG+T QQQRQ+
Sbjct 1 MAKAAALRKPKK-KVNPLDKDGITYIDYKDTALLRKFISDRGKIRARRVTGVTSQQQRQI 59
Query 61 AQAIKNAREMALLPYPGQDR 80
A+A+KNAREMALLPY R
Sbjct 60 ARAVKNAREMALLPYTATAR 79
>gi|145597063|ref|YP_001161360.1| 30S ribosomal protein S18 [Salinispora tropica CNB-440]
gi|205617371|sp|A4XDG6.1|RS18_SALTO RecName: Full=30S ribosomal protein S18
gi|145306400|gb|ABP56982.1| SSU ribosomal protein S18P [Salinispora tropica CNB-440]
Length=93
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/75 (67%), Positives = 59/75 (79%), Gaps = 1/75 (1%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA +A + P K K N LD G+ +DYKDTA LR FISDRGKIR+R VTG+T QQQRQ+
Sbjct 15 MAKAAALRKPKK-KVNPLDKDGITYIDYKDTALLRKFISDRGKIRARRVTGVTSQQQRQI 73
Query 61 AQAIKNAREMALLPY 75
A+A+KNAREMALLPY
Sbjct 74 ARAVKNAREMALLPY 88
>gi|256833731|ref|YP_003162458.1| 30S ribosomal protein S18 [Jonesia denitrificans DSM 20603]
gi|256687262|gb|ACV10155.1| ribosomal protein S18 [Jonesia denitrificans DSM 20603]
Length=78
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 3 AKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQ 62
AK+ + P K K N L S +++VDYKDTA LR FISDRGKIR+R VTG++VQ+QRQ+A+
Sbjct 2 AKTVVRKPKK-KSNPLKSAKIDAVDYKDTALLRKFISDRGKIRARRVTGVSVQEQRQIAR 60
Query 63 AIKNAREMALLPYPGQDR 80
A+KNAREMALLPY R
Sbjct 61 AVKNAREMALLPYSSSAR 78
>gi|332672266|ref|YP_004455274.1| 30S ribosomal protein S18 [Cellulomonas fimi ATCC 484]
gi|332341304|gb|AEE47887.1| ribosomal protein S18 [Cellulomonas fimi ATCC 484]
Length=78
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 61/78 (79%), Gaps = 1/78 (1%)
Query 3 AKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQ 62
AK+ + P K K+N L + +ESVDYKDTA LR FISDRGKIR+R VTG++VQ+QR +A+
Sbjct 2 AKAVVRKPKK-KQNPLKAAKIESVDYKDTALLRKFISDRGKIRARRVTGVSVQEQRAIAR 60
Query 63 AIKNAREMALLPYPGQDR 80
A+KNAREMALLPY R
Sbjct 61 AVKNAREMALLPYSSSAR 78
>gi|54026952|ref|YP_121194.1| 30S ribosomal protein S18 [Nocardia farcinica IFM 10152]
gi|59798929|sp|Q5YPR1.1|RS182_NOCFA RecName: Full=30S ribosomal protein S18 2
gi|54018460|dbj|BAD59830.1| putative ribosomal protein S18 [Nocardia farcinica IFM 10152]
Length=84
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYKD LR FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 18 RPKKNPLIAAGIETVDYKDVNLLRTFISDRGKIRSRRVTGLTPQQQRQVAVAVKNAREMA 77
Query 72 LLPY 75
LLP+
Sbjct 78 LLPF 81
>gi|213966078|ref|ZP_03394266.1| ribosomal protein S18 [Corynebacterium amycolatum SK46]
gi|213951276|gb|EEB62670.1| ribosomal protein S18 [Corynebacterium amycolatum SK46]
Length=83
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + GVE VDYKD LR FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 17 RPKKNPLKAAGVEKVDYKDINLLRQFISDRGKIRSRRVTGLTPQQQRQVATAVKNAREMA 76
Query 72 LLPY 75
LLP+
Sbjct 77 LLPF 80
>gi|336326221|ref|YP_004606187.1| 30S ribosomal protein S18 [Corynebacterium resistens DSM 45100]
gi|336102203|gb|AEI10023.1| 30S ribosomal protein S18 [Corynebacterium resistens DSM 45100]
Length=82
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 54/64 (85%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYK+ A LR FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAEGIETVDYKNYALLRKFISDRGKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|325003294|ref|ZP_08124406.1| 30S ribosomal protein S18 [Pseudonocardia sp. P1]
Length=80
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/67 (71%), Positives = 53/67 (80%), Gaps = 0/67 (0%)
Query 10 PTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNARE 69
P + K N L G+E VD+KD A LR FISDRGKIR+R VTGLT +QQRQVA AI+NARE
Sbjct 10 PARRKANPLKVRGIEHVDWKDAALLRTFISDRGKIRARRVTGLTGRQQRQVALAIRNARE 69
Query 70 MALLPYP 76
MALLPYP
Sbjct 70 MALLPYP 76
>gi|337290320|ref|YP_004629341.1| 30S ribosomal protein S18 [Corynebacterium ulcerans BR-AD22]
gi|334696436|gb|AEG81233.1| 30S ribosomal protein S18 [Corynebacterium ulcerans 809]
gi|334698626|gb|AEG83422.1| 30S ribosomal protein S18 [Corynebacterium ulcerans BR-AD22]
Length=82
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKD TLR FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAAGIEKVDYKDVNTLRQFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|315605480|ref|ZP_07880518.1| 30S ribosomal protein S18 [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315312826|gb|EFU60905.1| 30S ribosomal protein S18 [Actinomyces sp. oral taxon 180 str.
F0310]
Length=80
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/80 (59%), Positives = 58/80 (73%), Gaps = 0/80 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA R P K K N L S ++ +DYKDTA LR FISDRGKIR+R VTG++ Q+QR++
Sbjct 1 MAKPQLRNKPIKKKANPLKSAKIDKIDYKDTALLRKFISDRGKIRARRVTGVSTQEQRKI 60
Query 61 AQAIKNAREMALLPYPGQDR 80
A+A+KNAREMALLPY R
Sbjct 61 ARAVKNAREMALLPYSSTGR 80
>gi|227487780|ref|ZP_03918096.1| 30S ribosomal protein S18 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227542421|ref|ZP_03972470.1| 30S ribosomal protein S18 [Corynebacterium glucuronolyticum ATCC
51866]
gi|227092282|gb|EEI27594.1| 30S ribosomal protein S18 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181619|gb|EEI62591.1| 30S ribosomal protein S18 [Corynebacterium glucuronolyticum ATCC
51866]
Length=82
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKD TLR FISDRGKIRSR VTGLT +QQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAAGIEKVDYKDLNTLRQFISDRGKIRSRRVTGLTPRQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|300858072|ref|YP_003783055.1| 30S ribosomal protein S18 [Corynebacterium pseudotuberculosis
FRC41]
gi|300685526|gb|ADK28448.1| 30S ribosomal protein S18 [Corynebacterium pseudotuberculosis
FRC41]
gi|341824467|gb|AEK91988.1| 30S ribosomal protein S18 [Corynebacterium pseudotuberculosis
PAT10]
Length=82
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKD TLR FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAAGIEKVDYKDINTLRQFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|312138605|ref|YP_004005941.1| 30S ribosomal protein s18 rpsr [Rhodococcus equi 103S]
gi|325676329|ref|ZP_08156008.1| 30S ribosomal protein S18 [Rhodococcus equi ATCC 33707]
gi|311887944|emb|CBH47256.1| 30S ribosomal protein S18 RpsR [Rhodococcus equi 103S]
gi|325552890|gb|EGD22573.1| 30S ribosomal protein S18 [Rhodococcus equi ATCC 33707]
Length=84
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYKD LR FISDRGKIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 18 RPKKNPLIAAGIETVDYKDVNLLRTFISDRGKIRSRRVTGLTPQQQRQVAVAVKNAREMA 77
Query 72 LLPY 75
LLP+
Sbjct 78 LLPF 81
>gi|38233445|ref|NP_939212.1| 30S ribosomal protein S18 [Corynebacterium diphtheriae NCTC 13129]
gi|59798749|sp|Q6NIC9.1|RS18_CORDI RecName: Full=30S ribosomal protein S18
gi|38199705|emb|CAE49364.1| 30S ribosomal protein S18-2 [Corynebacterium diphtheriae]
Length=82
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKD TLR FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAAGIEKVDYKDINTLRQFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|333921234|ref|YP_004494815.1| 30S ribosomal protein S18 [Amycolicicoccus subflavus DQS3-9A1]
gi|333483455|gb|AEF42015.1| 30S ribosomal protein S18 [Amycolicicoccus subflavus DQS3-9A1]
Length=84
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
K KKN L + G+E VDYKD LR FISDRGKIRSR VTGLT QQQR+VA A+KNAREMA
Sbjct 18 KTKKNPLTTAGIERVDYKDVNLLRTFISDRGKIRSRRVTGLTPQQQREVAVAVKNAREMA 77
Query 72 LLPY 75
LLP+
Sbjct 78 LLPF 81
>gi|302538024|ref|ZP_07290366.1| ribosomal protein S18 [Streptomyces sp. C]
gi|302446919|gb|EFL18735.1| ribosomal protein S18 [Streptomyces sp. C]
Length=78
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/78 (62%), Positives = 59/78 (76%), Gaps = 0/78 (0%)
Query 1 MAAKSARKGPTKAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQV 60
MA + + P K++ N LD+ G+ +DYKDT LR FISDRGKIRSR VT +T QQQR++
Sbjct 1 MARRPSPSKPLKSRPNPLDTAGITYIDYKDTDLLRKFISDRGKIRSRRVTRVTAQQQRRL 60
Query 61 AQAIKNAREMALLPYPGQ 78
A AIKNAREMALLPY G+
Sbjct 61 ALAIKNAREMALLPYAGR 78
>gi|340795040|ref|YP_004760503.1| 30S ribosomal protein S18 [Corynebacterium variabile DSM 44702]
gi|340534950|gb|AEK37430.1| 30S ribosomal protein S18 [Corynebacterium variabile DSM 44702]
Length=83
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E+VDYKD A LR FISDRGKIR R VTGLT QQQRQVA A+KNAREMA
Sbjct 17 RPKKNPLKAEGIETVDYKDYALLRKFISDRGKIRGRRVTGLTPQQQRQVATAVKNAREMA 76
Query 72 LLPY 75
LLP+
Sbjct 77 LLPF 80
>gi|225023067|ref|ZP_03712259.1| hypothetical protein CORMATOL_03115 [Corynebacterium matruchotii
ATCC 33806]
gi|305681805|ref|ZP_07404609.1| ribosomal protein S18 [Corynebacterium matruchotii ATCC 14266]
gi|224944290|gb|EEG25499.1| hypothetical protein CORMATOL_03115 [Corynebacterium matruchotii
ATCC 33806]
gi|305658278|gb|EFM47781.1| ribosomal protein S18 [Corynebacterium matruchotii ATCC 14266]
Length=82
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 12 KAKKNLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMA 71
+ KKN L + G+E VDYKD TLR FISDR KIRSR VTGLT QQQRQVA A+KNAREMA
Sbjct 16 RPKKNPLKAAGIEKVDYKDINTLRQFISDRHKIRSRRVTGLTPQQQRQVATAVKNAREMA 75
Query 72 LLPY 75
LLP+
Sbjct 76 LLPF 79
>gi|269958121|ref|YP_003327910.1| 30S ribosomal protein S18 [Xylanimonas cellulosilytica DSM 15894]
gi|269306802|gb|ACZ32352.1| ribosomal protein S18 [Xylanimonas cellulosilytica DSM 15894]
Length=78
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/65 (70%), Positives = 54/65 (84%), Gaps = 0/65 (0%)
Query 16 NLLDSLGVESVDYKDTATLRVFISDRGKIRSRGVTGLTVQQQRQVAQAIKNAREMALLPY 75
N L + +ESVDYKDTA LR FISDRGKIR+R VTG++VQ+QRQ+A+A+KNAREMALLPY
Sbjct 14 NPLKTAKIESVDYKDTALLRKFISDRGKIRARRVTGVSVQEQRQIAKAVKNAREMALLPY 73
Query 76 PGQDR 80
R
Sbjct 74 SSSAR 78
Lambda K H
0.317 0.130 0.356
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130095868320
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40