BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2058c
Length=78
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609195|ref|NP_216574.1| 50S ribosomal protein L28 [Mycobact... 156 1e-36
gi|254777316|ref|ZP_05218832.1| ribosomal protein L28 [Mycobacte... 140 6e-32
gi|118471258|ref|YP_890290.1| ribosomal protein L28 [Mycobacteri... 136 1e-30
gi|254818909|ref|ZP_05223910.1| 50S ribosomal protein L28 [Mycob... 136 1e-30
gi|118464773|ref|YP_883997.1| ribosomal protein L28 [Mycobacteri... 135 1e-30
gi|298525561|ref|ZP_07012970.1| 50S ribosomal protein L28 rpmB2 ... 133 1e-29
gi|120406435|ref|YP_956264.1| 50S ribosomal protein L28 [Mycobac... 132 2e-29
gi|342859239|ref|ZP_08715893.1| ribosomal protein L28 [Mycobacte... 131 3e-29
gi|319950952|ref|ZP_08024824.1| 50S ribosomal protein L28 [Dietz... 131 3e-29
gi|54026949|ref|YP_121191.1| 50S ribosomal protein L28 [Nocardia... 130 6e-29
gi|169627438|ref|YP_001701087.1| 50S ribosomal protein L28-2 [My... 130 9e-29
gi|334563965|ref|ZP_08516956.1| 50S ribosomal protein L28 [Coryn... 129 2e-28
gi|145221904|ref|YP_001132582.1| ribosomal protein L28 [Mycobact... 128 2e-28
gi|226365090|ref|YP_002782873.1| 50S ribosomal protein L28 [Rhod... 127 7e-28
gi|227487783|ref|ZP_03918099.1| 50S ribosomal protein L28 [Coryn... 126 1e-27
gi|325676326|ref|ZP_08156005.1| 50S ribosomal protein L28 [Rhodo... 126 1e-27
gi|111022583|ref|YP_705555.1| 50S ribosomal protein L28 [Rhodoco... 126 1e-27
gi|229495046|ref|ZP_04388792.1| ribosomal protein L28 [Rhodococc... 125 2e-27
gi|226307890|ref|YP_002767850.1| 50S ribosomal protein L28 [Rhod... 125 2e-27
gi|68536621|ref|YP_251326.1| 50S ribosomal protein L28 [Coryneba... 125 3e-27
gi|336326218|ref|YP_004606184.1| 50S ribosomal protein L28 [Cory... 124 3e-27
gi|19552095|ref|NP_600097.1| 50S ribosomal protein L28 [Coryneba... 124 4e-27
gi|340795037|ref|YP_004760500.1| 50S ribosomal protein L28 [Cory... 124 5e-27
gi|300858075|ref|YP_003783058.1| 50S ribosomal protein L28 [Cory... 122 2e-26
gi|296393677|ref|YP_003658561.1| 50S ribosomal protein L28 [Segn... 122 2e-26
gi|305681979|ref|ZP_07404783.1| 50S ribosomal protein L28 [Coryn... 121 4e-26
gi|237785096|ref|YP_002905801.1| 50S ribosomal protein L28 [Cory... 121 4e-26
gi|38233448|ref|NP_939215.1| 50S ribosomal protein L28 [Coryneba... 120 7e-26
gi|227504195|ref|ZP_03934244.1| 50S ribosomal protein L28 [Coryn... 120 7e-26
gi|108801694|ref|YP_641891.1| 50S ribosomal protein L28 [Mycobac... 119 1e-25
gi|296118268|ref|ZP_06836849.1| ribosomal protein L28 [Corynebac... 119 1e-25
gi|227501466|ref|ZP_03931515.1| 50S ribosomal protein L28 [Coryn... 119 1e-25
gi|25027499|ref|NP_737553.1| 50S ribosomal protein L28 [Coryneba... 119 1e-25
gi|227832650|ref|YP_002834357.1| 50S ribosomal protein L28 [Cory... 119 1e-25
gi|317506812|ref|ZP_07964586.1| ribosomal protein L28 [Segnilipa... 118 3e-25
gi|172040222|ref|YP_001799936.1| 50S ribosomal protein L28 [Cory... 118 4e-25
gi|118619876|ref|YP_908208.1| 50S ribosomal protein L28 RpmB2 [M... 111 3e-23
gi|312138607|ref|YP_004005943.1| 50S ribosomal protein l28 rpmb ... 111 3e-23
gi|296140972|ref|YP_003648215.1| 50S ribosomal protein L28 [Tsuk... 111 4e-23
gi|213966101|ref|ZP_03394289.1| conserved domain protein [Coryne... 110 7e-23
gi|337763438|emb|CCB72146.1| 50S ribosomal protein L28-2 [Strept... 110 8e-23
gi|345010981|ref|YP_004813335.1| 50S ribosomal protein L28 [Stre... 109 1e-22
gi|302562726|ref|ZP_07315068.1| ribosomal protein L28 [Streptomy... 108 2e-22
gi|302546717|ref|ZP_07299059.1| ribosomal protein L28 [Streptomy... 108 2e-22
gi|262201431|ref|YP_003272639.1| 50S ribosomal protein L28 [Gord... 108 3e-22
gi|295835223|ref|ZP_06822156.1| ribosomal protein L28 [Streptomy... 108 4e-22
gi|326383108|ref|ZP_08204797.1| ribosomal protein L28 [Gordonia ... 108 4e-22
gi|134097360|ref|YP_001103021.1| 50S ribosomal protein L28 [Sacc... 107 5e-22
gi|291449958|ref|ZP_06589348.1| 50S ribosomal protein L28 [Strep... 107 5e-22
gi|289770857|ref|ZP_06530235.1| 50S ribosomal protein L28 [Strep... 107 6e-22
>gi|15609195|ref|NP_216574.1| 50S ribosomal protein L28 [Mycobacterium tuberculosis H37Rv]
gi|15841547|ref|NP_336584.1| 50S ribosomal protein L28 [Mycobacterium tuberculosis CDC1551]
gi|31793241|ref|NP_855734.1| 50S ribosomal protein L28 [Mycobacterium bovis AF2122/97]
80 more sequence titles
Length=78
Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 77/78 (99%), Positives = 78/78 (100%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID
Sbjct 1 MSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLRRQGQRI
Sbjct 61 RDGIEAVVARLRRQGQRI 78
>gi|254777316|ref|ZP_05218832.1| ribosomal protein L28 [Mycobacterium avium subsp. avium ATCC
25291]
Length=78
Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/78 (86%), Positives = 73/78 (94%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+P FGN VSHSHRR+ RRWSPNIQ +TYYLPSEGRR+RLRVS KGIKVID
Sbjct 1 MSAHCQVTGRRPSFGNAVSHSHRRTPRRWSPNIQLKTYYLPSEGRRVRLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLRRQGQ+I
Sbjct 61 RDGIEAVVARLRRQGQQI 78
>gi|118471258|ref|YP_890290.1| ribosomal protein L28 [Mycobacterium smegmatis str. MC2 155]
gi|118172545|gb|ABK73441.1| ribosomal protein L28 [Mycobacterium smegmatis str. MC2 155]
Length=78
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/78 (81%), Positives = 72/78 (93%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR PGFGN+VSHSHRR+ RRW PNIQ +TYYLPSEGRRIRLRVS KGIKVID
Sbjct 1 MSAHCQVTGRGPGFGNSVSHSHRRTPRRWDPNIQNKTYYLPSEGRRIRLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVAR+R +G+++
Sbjct 61 RDGIEAVVARMRARGEKV 78
>gi|254818909|ref|ZP_05223910.1| 50S ribosomal protein L28 [Mycobacterium intracellulare ATCC
13950]
Length=82
Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/78 (90%), Positives = 75/78 (97%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+PGFGN VSHSHRR+RRRWSPNIQ +TYYLPSEGRRIRLRVS KGIKVID
Sbjct 5 VSAHCQVTGRRPGFGNAVSHSHRRTRRRWSPNIQLKTYYLPSEGRRIRLRVSAKGIKVID 64
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLRR+GQRI
Sbjct 65 RDGIEAVVARLRREGQRI 82
>gi|118464773|ref|YP_883997.1| ribosomal protein L28 [Mycobacterium avium 104]
gi|118166060|gb|ABK66957.1| ribosomal protein L28 [Mycobacterium avium 104]
Length=78
Score = 135 bits (341), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/78 (85%), Positives = 71/78 (92%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGR+P FGN VSHSHRR+ RRWSPNIQ +TYYLPSEGRRIRLRVS KGIKVID
Sbjct 1 MSADCQVTGRRPSFGNAVSHSHRRTPRRWSPNIQLKTYYLPSEGRRIRLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLRR GQ+I
Sbjct 61 RDGIEAVVARLRRHGQQI 78
>gi|298525561|ref|ZP_07012970.1| 50S ribosomal protein L28 rpmB2 [Mycobacterium tuberculosis 94_M4241A]
gi|298495355|gb|EFI30649.1| 50S ribosomal protein L28 rpmB2 [Mycobacterium tuberculosis 94_M4241A]
Length=78
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 76/78 (98%), Positives = 78/78 (100%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFG+TVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID
Sbjct 1 MSAHCQVTGRKPGFGHTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLRRQGQRI
Sbjct 61 RDGIEAVVARLRRQGQRI 78
>gi|120406435|ref|YP_956264.1| 50S ribosomal protein L28 [Mycobacterium vanbaalenii PYR-1]
gi|119959253|gb|ABM16258.1| LSU ribosomal protein L28P [Mycobacterium vanbaalenii PYR-1]
Length=78
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/78 (84%), Positives = 74/78 (95%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR PGFGN VSHSHRR+RRRW+PNIQ +TYYLPSEGRR++LRVS KGIKVID
Sbjct 1 MSAHCQVTGRAPGFGNAVSHSHRRTRRRWNPNIQTKTYYLPSEGRRVKLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVARLRR+GQ+I
Sbjct 61 RDGIESVVARLRREGQKI 78
>gi|342859239|ref|ZP_08715893.1| ribosomal protein L28 [Mycobacterium colombiense CECT 3035]
gi|342133480|gb|EGT86683.1| ribosomal protein L28 [Mycobacterium colombiense CECT 3035]
Length=78
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 63/78 (81%), Positives = 72/78 (93%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+PGFGN VSHS RR+ RR++PN+Q +TYYLPSEGRRIRLRVS KGIKVID
Sbjct 1 MSAHCQVTGRRPGFGNAVSHSGRRTSRRFNPNVQLKTYYLPSEGRRIRLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA LRR+GQRI
Sbjct 61 RDGIESVVAGLRRRGQRI 78
>gi|319950952|ref|ZP_08024824.1| 50S ribosomal protein L28 [Dietzia cinnamea P4]
gi|319435374|gb|EFV90622.1| 50S ribosomal protein L28 [Dietzia cinnamea P4]
Length=78
Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/78 (77%), Positives = 72/78 (93%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFG +VSHSHRR+ RRW+PNIQ+R+Y+LPSEGRR+ L VSTKGIK ID
Sbjct 1 MSAHCQVTGRKPGFGKSVSHSHRRTNRRWNPNIQRRSYFLPSEGRRVTLTVSTKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVAR+R +G++I
Sbjct 61 RDGIEAVVARIRARGEKI 78
>gi|54026949|ref|YP_121191.1| 50S ribosomal protein L28 [Nocardia farcinica IFM 10152]
gi|67461561|sp|Q5YPR4.1|RL282_NOCFA RecName: Full=50S ribosomal protein L28 2
gi|54018457|dbj|BAD59827.1| putative ribosomal protein L28 [Nocardia farcinica IFM 10152]
Length=78
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 61/78 (79%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFG +VSHSH R+ RRW PNIQ++TYYLPSEGRRI L VS KGIK ID
Sbjct 1 MSAHCQVTGRKPGFGKSVSHSHVRTNRRWDPNIQRKTYYLPSEGRRITLTVSAKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLR +G++I
Sbjct 61 RDGIEAVVARLRARGEKI 78
>gi|169627438|ref|YP_001701087.1| 50S ribosomal protein L28-2 [Mycobacterium abscessus ATCC 19977]
gi|169239405|emb|CAM60433.1| 50S ribosomal protein L28-2 [Mycobacterium abscessus]
Length=82
Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/78 (85%), Positives = 72/78 (93%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
LSAHC+VTGR PGFGN VSHSHRR+RRRWSPNIQ +TYYLPSE RRI+LRVSTKGIKVID
Sbjct 5 LSAHCEVTGRSPGFGNAVSHSHRRTRRRWSPNIQLKTYYLPSEDRRIKLRVSTKGIKVID 64
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLR QG++
Sbjct 65 RDGIEAVVARLRAQGRKF 82
>gi|334563965|ref|ZP_08516956.1| 50S ribosomal protein L28 [Corynebacterium bovis DSM 20582]
Length=78
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 58/78 (75%), Positives = 71/78 (92%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFG +VSHSHRR+ RRW+PNIQ+R++YLPSEGR I L VSTKG+K ID
Sbjct 1 MSAHCQVTGRKPGFGKSVSHSHRRTNRRWNPNIQRRSFYLPSEGRSITLNVSTKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA+LR +G++I
Sbjct 61 RDGIESVVAKLRARGEKI 78
>gi|145221904|ref|YP_001132582.1| ribosomal protein L28 [Mycobacterium gilvum PYR-GCK]
gi|315446360|ref|YP_004079239.1| 50S ribosomal protein L28P [Mycobacterium sp. Spyr1]
gi|145214390|gb|ABP43794.1| LSU ribosomal protein L28P [Mycobacterium gilvum PYR-GCK]
gi|315264663|gb|ADU01405.1| LSU ribosomal protein L28P [Mycobacterium sp. Spyr1]
Length=78
Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 64/78 (83%), Positives = 73/78 (94%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFGN VSHSHRR+RRRW PNIQ++TYYLPSEGRRI LRVSTKGIK+ID
Sbjct 1 MSAHCQVTGRKPGFGNAVSHSHRRTRRRWDPNIQRKTYYLPSEGRRITLRVSTKGIKIID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVARLRR+ ++
Sbjct 61 RDGIESVVARLRREEHKL 78
>gi|226365090|ref|YP_002782873.1| 50S ribosomal protein L28 [Rhodococcus opacus B4]
gi|226243580|dbj|BAH53928.1| 50S ribosomal protein L28 [Rhodococcus opacus B4]
Length=78
Score = 127 bits (318), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 56/78 (72%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKPGFG +VSHSH+R+ RRW PNIQ++TY LPSEGRRI L +S KGIK +D
Sbjct 1 MSAHCQVTGRKPGFGKSVSHSHKRTNRRWDPNIQKKTYLLPSEGRRITLTLSAKGIKTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVAR+R +G+++
Sbjct 61 RDGIEAVVARIRARGEKV 78
>gi|227487783|ref|ZP_03918099.1| 50S ribosomal protein L28 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227542424|ref|ZP_03972473.1| 50S ribosomal protein L28 [Corynebacterium glucuronolyticum ATCC
51866]
gi|227092285|gb|EEI27597.1| 50S ribosomal protein L28 [Corynebacterium glucuronolyticum ATCC
51867]
gi|227181622|gb|EEI62594.1| 50S ribosomal protein L28 [Corynebacterium glucuronolyticum ATCC
51866]
Length=78
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/78 (76%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKPGFG +VSHSHRR+ RRW+PNIQ+R +YLPSEGR I L VSTKG+KVID
Sbjct 1 MSAICQVTGRKPGFGKSVSHSHRRTNRRWNPNIQRRKFYLPSEGRTITLNVSTKGLKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVAR+R +G+R+
Sbjct 61 RDGIEAVVARIRARGERV 78
>gi|325676326|ref|ZP_08156005.1| 50S ribosomal protein L28 [Rhodococcus equi ATCC 33707]
gi|325552887|gb|EGD22570.1| 50S ribosomal protein L28 [Rhodococcus equi ATCC 33707]
Length=78
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 57/78 (74%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+PGFG +VSHSHRR+ RRW+PNIQ +TY+LP EGRRI LRV+ KGI+ ID
Sbjct 1 MSAHCQVTGRRPGFGRSVSHSHRRTNRRWNPNIQTKTYFLPGEGRRITLRVTPKGIRTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVARLR G+++
Sbjct 61 RDGIEAVVARLRAAGEKV 78
>gi|111022583|ref|YP_705555.1| 50S ribosomal protein L28 [Rhodococcus jostii RHA1]
gi|110822113|gb|ABG97397.1| 50S ribosomal protein L28 [Rhodococcus jostii RHA1]
Length=78
Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/78 (72%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+PGFG +VSHSH+R+ RRW PNIQ++TY+LPSEGRR+ L +S KGIK ID
Sbjct 1 MSAHCQVTGRQPGFGKSVSHSHKRTNRRWDPNIQKKTYFLPSEGRRVTLTLSAKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVAR+R +G +I
Sbjct 61 RDGIEAVVARIRARGGKI 78
>gi|229495046|ref|ZP_04388792.1| ribosomal protein L28 [Rhodococcus erythropolis SK121]
gi|229317977|gb|EEN83852.1| ribosomal protein L28 [Rhodococcus erythropolis SK121]
Length=78
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/78 (74%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR PGFG +VSHSH+RS RRW+PNIQ++TY LPSEGRRI L +STKGIK ID
Sbjct 1 MSAHCQVTGRVPGFGKSVSHSHKRSNRRWNPNIQRKTYLLPSEGRRITLTLSTKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVAR+R +G+++
Sbjct 61 RDGIESVVARIRARGEKV 78
>gi|226307890|ref|YP_002767850.1| 50S ribosomal protein L28 [Rhodococcus erythropolis PR4]
gi|226187007|dbj|BAH35111.1| 50S ribosomal protein L28 [Rhodococcus erythropolis PR4]
Length=78
Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/78 (74%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR PGFG +VSHSH+RS RRW+PNIQ++TY LPSEGRRI L +STKGIK ID
Sbjct 1 MSAHCQVTGRVPGFGKSVSHSHKRSNRRWNPNIQRKTYVLPSEGRRITLTLSTKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVAR+R +G+++
Sbjct 61 RDGIESVVARIRARGEKV 78
>gi|68536621|ref|YP_251326.1| 50S ribosomal protein L28 [Corynebacterium jeikeium K411]
gi|260577822|ref|ZP_05845756.1| 50S ribosomal protein L28 [Corynebacterium jeikeium ATCC 43734]
gi|123650515|sp|Q4JTZ9.1|RL28_CORJK RecName: Full=50S ribosomal protein L28
gi|68264220|emb|CAI37708.1| 50S ribosomal protein L28 [Corynebacterium jeikeium K411]
gi|258604049|gb|EEW17292.1| 50S ribosomal protein L28 [Corynebacterium jeikeium ATCC 43734]
Length=78
Score = 125 bits (313), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/78 (72%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA+CQVTGRKP FG +VSHSHRR+ RRW+PNIQ+RT+YLPSEGR I L VSTKG+K ID
Sbjct 1 MSAYCQVTGRKPSFGKSVSHSHRRTNRRWNPNIQRRTFYLPSEGRSITLNVSTKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|336326218|ref|YP_004606184.1| 50S ribosomal protein L28 [Corynebacterium resistens DSM 45100]
gi|336102200|gb|AEI10020.1| 50S ribosomal protein L28 [Corynebacterium resistens DSM 45100]
Length=78
Score = 124 bits (312), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/78 (72%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+P FG TVSHSHRR+ RRW+PNIQ+R++YLPSEGR I L VSTKG+K ID
Sbjct 1 MSAHCQVTGREPKFGKTVSHSHRRTSRRWNPNIQRRSFYLPSEGRTITLNVSTKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|19552095|ref|NP_600097.1| 50S ribosomal protein L28 [Corynebacterium glutamicum ATCC 13032]
gi|62389758|ref|YP_225160.1| 50S ribosomal protein L28 [Corynebacterium glutamicum ATCC 13032]
gi|145295039|ref|YP_001137860.1| 50S ribosomal protein L28 [Corynebacterium glutamicum R]
6 more sequence titles
Length=78
Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/78 (72%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGRKP FG +VSHSHRR+ RRW+PN+Q+R +Y+PSEGR I L VSTKG+KVID
Sbjct 1 MSAHCQVTGRKPSFGKSVSHSHRRTSRRWNPNVQRRKFYVPSEGRTITLTVSTKGLKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVA++R +G++I
Sbjct 61 RDGIEAVVAQIRARGEKI 78
>gi|340795037|ref|YP_004760500.1| 50S ribosomal protein L28 [Corynebacterium variabile DSM 44702]
gi|340534947|gb|AEK37427.1| 50S ribosomal protein L28 [Corynebacterium variabile DSM 44702]
Length=78
Score = 124 bits (311), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 71/78 (92%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA+CQVTGRKPGFG +VSHSHRR+ RRW+PNIQ+R++Y+PSEGR I L VSTKG+K ID
Sbjct 1 MSAYCQVTGRKPGFGKSVSHSHRRTNRRWNPNIQRRSFYVPSEGRTITLNVSTKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|300858075|ref|YP_003783058.1| 50S ribosomal protein L28 [Corynebacterium pseudotuberculosis
FRC41]
gi|337290323|ref|YP_004629344.1| 50S ribosomal protein L28 [Corynebacterium ulcerans BR-AD22]
gi|300685529|gb|ADK28451.1| 50S ribosomal protein L28 [Corynebacterium pseudotuberculosis
FRC41]
6 more sequence titles
Length=78
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKPG+G +VSHSHRR+ RRW+PN+Q+R +YLPSEGR I L VSTKG+KVID
Sbjct 1 MSAICQVTGRKPGYGKSVSHSHRRTSRRWNPNVQRRKFYLPSEGRTITLNVSTKGLKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|296393677|ref|YP_003658561.1| 50S ribosomal protein L28 [Segniliparus rotundus DSM 44985]
gi|296180824|gb|ADG97730.1| ribosomal protein L28 [Segniliparus rotundus DSM 44985]
Length=78
Score = 122 bits (305), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/78 (74%), Positives = 66/78 (85%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+PGFG VSHSHRR+ RRW+PNIQ+R Y+LPSEGR I L VSTKGIK ID
Sbjct 1 MSAHCQVTGRQPGFGMAVSHSHRRTNRRWNPNIQRRRYFLPSEGRTITLNVSTKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
R GIEAVVA LR +G ++
Sbjct 61 RKGIEAVVAELRAKGVKV 78
>gi|305681979|ref|ZP_07404783.1| 50S ribosomal protein L28 [Corynebacterium matruchotii ATCC 14266]
gi|305658452|gb|EFM47955.1| 50S ribosomal protein L28 [Corynebacterium matruchotii ATCC 14266]
Length=111
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 54/78 (70%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKPG+G +VSHSHRR+ RRW+PN+Q+R +YLPSEGR I L VSTKG+KVID
Sbjct 34 MSAICQVTGRKPGYGKSVSHSHRRTSRRWNPNVQRRKFYLPSEGRTITLTVSTKGLKVID 93
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G+++
Sbjct 94 RDGIESVVAKIRARGEKV 111
>gi|237785096|ref|YP_002905801.1| 50S ribosomal protein L28 [Corynebacterium kroppenstedtii DSM
44385]
gi|259646731|sp|C4LHF3.1|RL28_CORK4 RecName: Full=50S ribosomal protein L28
gi|237758008|gb|ACR17258.1| 50S ribosomal protein L28 [Corynebacterium kroppenstedtii DSM
44385]
Length=78
Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA+CQVTGRKP FG +VSHSHRR+ RRW+PNIQ+R++YLPSEGR I L VSTKG+K ID
Sbjct 1 MSAYCQVTGRKPSFGKSVSHSHRRTNRRWNPNIQRRSFYLPSEGRTITLNVSTKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
R GIE+VVA+LR +G++I
Sbjct 61 RYGIESVVAKLRARGEKI 78
>gi|38233448|ref|NP_939215.1| 50S ribosomal protein L28 [Corynebacterium diphtheriae NCTC 13129]
gi|67461437|sp|Q6NIC6.1|RL28_CORDI RecName: Full=50S ribosomal protein L28
gi|38199708|emb|CAE49368.1| 50S ribosomal protein L28-2 [Corynebacterium diphtheriae]
Length=78
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 54/78 (70%), Positives = 70/78 (90%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGR+PG+G +VSHSHRR+ RRW+PN+Q+R +YLPSEGR I L VSTKG+KVID
Sbjct 1 MSAICQVTGRQPGYGKSVSHSHRRTSRRWNPNVQRRKFYLPSEGRTITLNVSTKGLKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|227504195|ref|ZP_03934244.1| 50S ribosomal protein L28 [Corynebacterium striatum ATCC 6940]
gi|227199239|gb|EEI79287.1| 50S ribosomal protein L28 [Corynebacterium striatum ATCC 6940]
Length=78
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 56/78 (72%), Positives = 68/78 (88%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKP FG VSHSHRR+ RRW+PN+Q+R YYLPSEGR I L VSTKGIK+ID
Sbjct 1 MSAICQVTGRKPEFGKQVSHSHRRTSRRWNPNVQRRRYYLPSEGRTITLNVSTKGIKIID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|108801694|ref|YP_641891.1| 50S ribosomal protein L28 [Mycobacterium sp. MCS]
gi|119870845|ref|YP_940797.1| 50S ribosomal protein L28 [Mycobacterium sp. KMS]
gi|126437680|ref|YP_001073371.1| 50S ribosomal protein L28 [Mycobacterium sp. JLS]
gi|108772113|gb|ABG10835.1| LSU ribosomal protein L28P [Mycobacterium sp. MCS]
gi|119696934|gb|ABL94007.1| LSU ribosomal protein L28P [Mycobacterium sp. KMS]
gi|126237480|gb|ABO00881.1| LSU ribosomal protein L28P [Mycobacterium sp. JLS]
Length=78
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/78 (80%), Positives = 71/78 (92%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR PGFGN VSHSHRR+RRRW PNIQ +TYY+PSEGRR+ LRVS KGIKVID
Sbjct 1 MSAHCQVTGRSPGFGNRVSHSHRRTRRRWRPNIQTKTYYVPSEGRRVTLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGI+AV+AR+RRQG +I
Sbjct 61 RDGIDAVLARIRRQGGKI 78
>gi|296118268|ref|ZP_06836849.1| ribosomal protein L28 [Corynebacterium ammoniagenes DSM 20306]
gi|295968826|gb|EFG82070.1| ribosomal protein L28 [Corynebacterium ammoniagenes DSM 20306]
Length=78
Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 68/78 (88%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGR+P FG VSHSHRR+ RRW+PN+Q+R YYLPSEGR I L VSTKGIK+ID
Sbjct 1 MSAICQVTGREPSFGKQVSHSHRRTSRRWNPNVQRRRYYLPSEGRTITLNVSTKGIKIID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|227501466|ref|ZP_03931515.1| 50S ribosomal protein L28 [Corynebacterium accolens ATCC 49725]
gi|255324830|ref|ZP_05365943.1| ribosomal protein L28 [Corynebacterium tuberculostearicum SK141]
gi|306835627|ref|ZP_07468636.1| 50S ribosomal protein L28 [Corynebacterium accolens ATCC 49726]
gi|311740878|ref|ZP_07714705.1| 50S ribosomal protein L28 [Corynebacterium pseudogenitalium ATCC
33035]
gi|227077491|gb|EEI15454.1| 50S ribosomal protein L28 [Corynebacterium accolens ATCC 49725]
gi|255298130|gb|EET77434.1| ribosomal protein L28 [Corynebacterium tuberculostearicum SK141]
gi|304568471|gb|EFM44027.1| 50S ribosomal protein L28 [Corynebacterium accolens ATCC 49726]
gi|311304398|gb|EFQ80474.1| 50S ribosomal protein L28 [Corynebacterium pseudogenitalium ATCC
33035]
Length=78
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 68/78 (88%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKP FG VSHSHRR+ RRW+PN+Q+R YYLPSEGR I L VSTKG+K+ID
Sbjct 1 MSAICQVTGRKPEFGKQVSHSHRRTSRRWNPNVQRRRYYLPSEGRTITLNVSTKGMKIID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|25027499|ref|NP_737553.1| 50S ribosomal protein L28 [Corynebacterium efficiens YS-314]
gi|67461532|sp|Q8FR24.1|RL28_COREF RecName: Full=50S ribosomal protein L28
gi|23492781|dbj|BAC17753.1| putative 50S ribosomal protein L28 [Corynebacterium efficiens
YS-314]
Length=78
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/78 (68%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+P FG +VSHSHRR+ RRW+PN+Q+R +++PS GR I L VSTKG+KVID
Sbjct 1 MSAHCQVTGRQPSFGKSVSHSHRRTSRRWNPNVQRRKFFVPSMGRTITLTVSTKGLKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEAVVA++R +G++I
Sbjct 61 RDGIEAVVAQIRARGEKI 78
>gi|227832650|ref|YP_002834357.1| 50S ribosomal protein L28 [Corynebacterium aurimucosum ATCC 700975]
gi|262182865|ref|ZP_06042286.1| 50S ribosomal protein L28 [Corynebacterium aurimucosum ATCC 700975]
gi|254801353|sp|C3PF15.1|RL28_CORA7 RecName: Full=50S ribosomal protein L28
gi|227453666|gb|ACP32419.1| 50S ribosomal protein L28 [Corynebacterium aurimucosum ATCC 700975]
Length=78
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 68/78 (88%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKP FG VSHSHRR+ RRW+PN+Q+R YYLPSEGR I L VSTKG+K+ID
Sbjct 1 MSAICQVTGRKPEFGKQVSHSHRRTSRRWNPNVQRRRYYLPSEGRTITLTVSTKGMKIID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|317506812|ref|ZP_07964586.1| ribosomal protein L28 [Segniliparus rugosus ATCC BAA-974]
gi|316254886|gb|EFV14182.1| ribosomal protein L28 [Segniliparus rugosus ATCC BAA-974]
Length=78
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 55/78 (71%), Positives = 64/78 (83%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR+PGFG VSHSHRR+ RRW+PNIQ+R Y+LPSEGR I L VS KGIK ID
Sbjct 1 MSAHCQVTGRQPGFGMAVSHSHRRTNRRWNPNIQRRRYFLPSEGRTITLNVSAKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
R GIE VVA LR +G ++
Sbjct 61 RKGIETVVAELRAKGVKV 78
>gi|172040222|ref|YP_001799936.1| 50S ribosomal protein L28 [Corynebacterium urealyticum DSM 7109]
gi|226738059|sp|B1VFG3.1|RL28_CORU7 RecName: Full=50S ribosomal protein L28
gi|171851526|emb|CAQ04502.1| 50S ribosomal protein L28 [Corynebacterium urealyticum DSM 7109]
Length=78
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/78 (68%), Positives = 67/78 (86%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA+CQVTGRKPGFG VSHSHR + RRW+PN+Q+R +YLPSEGR I L VS KG+K ID
Sbjct 1 MSAYCQVTGRKPGFGKQVSHSHRHTSRRWNPNVQRRKFYLPSEGRTITLTVSPKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIE+VVA++R +G++I
Sbjct 61 RDGIESVVAKIRARGEKI 78
>gi|118619876|ref|YP_908208.1| 50S ribosomal protein L28 RpmB2 [Mycobacterium ulcerans Agy99]
gi|183980323|ref|YP_001848614.1| 50S ribosomal protein L28 RpmB2 [Mycobacterium marinum M]
gi|118571986|gb|ABL06737.1| 50S ribosomal protein L28 RpmB2 [Mycobacterium ulcerans Agy99]
gi|183173649|gb|ACC38759.1| 50S ribosomal protein L28 RpmB2 [Mycobacterium marinum M]
Length=78
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/78 (83%), Positives = 69/78 (89%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGR FGNTVSHSHRRSRRRWSPNIQ +TYYLPSE RRI+LRVS KGIKVID
Sbjct 1 MSARCQVTGRTVSFGNTVSHSHRRSRRRWSPNIQLKTYYLPSENRRIKLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGIEA VARLRR G++I
Sbjct 61 RDGIEATVARLRRAGEQI 78
>gi|312138607|ref|YP_004005943.1| 50S ribosomal protein l28 rpmb [Rhodococcus equi 103S]
gi|311887946|emb|CBH47258.1| 50S ribosomal protein L28 RpmB [Rhodococcus equi 103S]
Length=72
Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/72 (71%), Positives = 63/72 (88%), Gaps = 0/72 (0%)
Query 7 VTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVIDRDGIEA 66
+TGR+PGFG +VSHSHRR+ RRW+PNIQ +TY+LP EGRRI LRV+ KGI+ IDRDGIEA
Sbjct 1 MTGRRPGFGRSVSHSHRRTNRRWNPNIQTKTYFLPGEGRRITLRVTPKGIRTIDRDGIEA 60
Query 67 VVARLRRQGQRI 78
VVARLR G+++
Sbjct 61 VVARLRAAGEKV 72
>gi|296140972|ref|YP_003648215.1| 50S ribosomal protein L28 [Tsukamurella paurometabola DSM 20162]
gi|296029106|gb|ADG79876.1| ribosomal protein L28 [Tsukamurella paurometabola DSM 20162]
Length=78
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/78 (68%), Positives = 64/78 (83%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQVTGR PGFG VSHSH R+ RRW PNIQ+R YY+PS GR + LRVS KGIK ID
Sbjct 1 MSAHCQVTGRAPGFGKRVSHSHVRTSRRWDPNIQRRRYYVPSLGRTVVLRVSAKGIKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
R GI+AVVA ++R+G++I
Sbjct 61 RRGIDAVVADIQRRGEKI 78
>gi|213966101|ref|ZP_03394289.1| conserved domain protein [Corynebacterium amycolatum SK46]
gi|213951299|gb|EEB62693.1| conserved domain protein [Corynebacterium amycolatum SK46]
Length=135
Score = 110 bits (275), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/78 (66%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTGRKP FG TVSHSHRR+ RRW+PN+Q++ +YL SEGR I L VS KG+K ID
Sbjct 58 MSAICQVTGRKPSFGKTVSHSHRRTSRRWNPNVQRKKFYLASEGRHITLNVSPKGLKTID 117
Query 61 RDGIEAVVARLRRQGQRI 78
+ GIEAVVA++R +G++I
Sbjct 118 KYGIEAVVAQIRARGEKI 135
>gi|337763438|emb|CCB72146.1| 50S ribosomal protein L28-2 [Streptomyces cattleya NRRL 8057]
Length=78
Score = 110 bits (275), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/78 (65%), Positives = 67/78 (86%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQ+TGR+PGFGN VSHSH+RS+RR+ PN+Q+R Y+LPSE R +RL +STKG+K +D
Sbjct 1 MSAHCQLTGRRPGFGNRVSHSHQRSKRRFDPNVQRRRYWLPSERRYVRLTLSTKGVKTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
G+EA VAR+R +G+RI
Sbjct 61 AIGVEAAVARVRARGERI 78
>gi|345010981|ref|YP_004813335.1| 50S ribosomal protein L28 [Streptomyces violaceusniger Tu 4113]
gi|344037330|gb|AEM83055.1| 50S ribosomal protein L28 [Streptomyces violaceusniger Tu 4113]
Length=78
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQ+TGR+PGFG+ +SHSHRR++RR+ PNIQ + Y+LPSEGR IRL +STK IK +D
Sbjct 1 MSAHCQLTGRQPGFGHHISHSHRRTKRRFDPNIQHKRYWLPSEGRHIRLTLSTKAIKTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
GIEA VAR+R +G ++
Sbjct 61 TIGIEAAVARIRARGGKV 78
>gi|302562726|ref|ZP_07315068.1| ribosomal protein L28 [Streptomyces griseoflavus Tu4000]
gi|302480344|gb|EFL43437.1| ribosomal protein L28 [Streptomyces griseoflavus Tu4000]
Length=78
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/78 (62%), Positives = 64/78 (83%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQ+TG +PGFGNT+SHSHRR+ RR+ PNIQ++ Y+LPSEGR +RL +S K IK +D
Sbjct 1 MSAHCQLTGAQPGFGNTISHSHRRTSRRFDPNIQRKRYWLPSEGRHVRLTLSAKAIKTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
GIEA VAR+R +G ++
Sbjct 61 SIGIEAAVARIRARGGKV 78
>gi|302546717|ref|ZP_07299059.1| ribosomal protein L28 [Streptomyces hygroscopicus ATCC 53653]
gi|302464335|gb|EFL27428.1| ribosomal protein L28 [Streptomyces himastatinicus ATCC 53653]
Length=78
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 48/78 (62%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQ+TGR+PGFG +SHSHRR++RR+ PNIQ++ Y+LPSEGR +RL +STKGIK +D
Sbjct 1 MSAHCQLTGRQPGFGQKISHSHRRTKRRFDPNIQRKRYWLPSEGRHVRLTLSTKGIKTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
GIEA V R+R +G ++
Sbjct 61 VIGIEAAVTRIRAKGGKV 78
>gi|262201431|ref|YP_003272639.1| 50S ribosomal protein L28 [Gordonia bronchialis DSM 43247]
gi|262084778|gb|ACY20746.1| ribosomal protein L28 [Gordonia bronchialis DSM 43247]
Length=78
Score = 108 bits (270), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 64/78 (83%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SA CQVTG PGFGN VSHSHR++RRRW+PNIQ+R +Y+P+E R I L VS KG+K ID
Sbjct 1 MSARCQVTGATPGFGNRVSHSHRKTRRRWNPNIQRRRFYIPAEDRHITLNVSAKGLKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
R GIE+V+A +R +G++I
Sbjct 61 RHGIESVLATIRARGEKI 78
>gi|295835223|ref|ZP_06822156.1| ribosomal protein L28 [Streptomyces sp. SPB74]
gi|197698184|gb|EDY45117.1| ribosomal protein L28 [Streptomyces sp. SPB74]
Length=78
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 63/78 (81%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQ+TG KP FGN VSHSHRR+ RR+ PNIQ++ Y+LPSEGR +RL +S KGIK +D
Sbjct 1 MSAHCQLTGSKPAFGNKVSHSHRRTPRRFDPNIQRKRYWLPSEGRYVRLVLSAKGIKTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
G+EA VAR+R +G R+
Sbjct 61 AIGVEAAVARVRARGNRV 78
>gi|326383108|ref|ZP_08204797.1| ribosomal protein L28 [Gordonia neofelifaecis NRRL B-59395]
gi|326198244|gb|EGD55429.1| ribosomal protein L28 [Gordonia neofelifaecis NRRL B-59395]
Length=78
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/78 (65%), Positives = 65/78 (84%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
++A CQVTGR PGFG VSHSHRR+ R+W PN+ ++TY++PS R + LRVS KGIKVID
Sbjct 1 MAARCQVTGRVPGFGRQVSHSHRRTSRQWRPNLFRKTYWVPSLSRNVTLRVSAKGIKVID 60
Query 61 RDGIEAVVARLRRQGQRI 78
RDGI+A VAR++R+G+RI
Sbjct 61 RDGIDAAVARIQRRGERI 78
>gi|134097360|ref|YP_001103021.1| 50S ribosomal protein L28 [Saccharopolyspora erythraea NRRL 2338]
gi|291009081|ref|ZP_06567054.1| 50S ribosomal protein L28 [Saccharopolyspora erythraea NRRL 2338]
gi|133909983|emb|CAM00095.1| 50S ribosomal protein L28 [Saccharopolyspora erythraea NRRL 2338]
Length=78
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/78 (62%), Positives = 63/78 (81%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+S CQVTG+KPG+G VSHSH R+ RRW PN+Q+R Y+LPSEGR +RLR+S K +K ID
Sbjct 1 MSVRCQVTGKKPGYGKQVSHSHVRTNRRWMPNVQRRRYWLPSEGRWVRLRLSAKAMKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
R GIE+VVA +R +G+R+
Sbjct 61 RRGIESVVAEMRARGERV 78
>gi|291449958|ref|ZP_06589348.1| 50S ribosomal protein L28 [Streptomyces albus J1074]
gi|291352907|gb|EFE79809.1| 50S ribosomal protein L28 [Streptomyces albus J1074]
Length=78
Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/78 (62%), Positives = 64/78 (83%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHCQ+TG KPGFGN++SHSHRR+ RR+ PNIQ+R Y+LPSEGR +RL +S + +K ID
Sbjct 1 MSAHCQLTGAKPGFGNSISHSHRRTSRRFDPNIQRRRYWLPSEGRTVRLTLSARAVKTID 60
Query 61 RDGIEAVVARLRRQGQRI 78
GIEA VAR+R +G ++
Sbjct 61 VIGIEAAVARIRARGGKV 78
>gi|289770857|ref|ZP_06530235.1| 50S ribosomal protein L28 [Streptomyces lividans TK24]
gi|289701056|gb|EFD68485.1| 50S ribosomal protein L28 [Streptomyces lividans TK24]
Length=78
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 49/78 (63%), Positives = 63/78 (81%), Gaps = 0/78 (0%)
Query 1 LSAHCQVTGRKPGFGNTVSHSHRRSRRRWSPNIQQRTYYLPSEGRRIRLRVSTKGIKVID 60
+SAHC +TG +PGFGN +SHSHRR+ RR+ PNIQ R Y+LPSE R +RLR+STKGI+ +D
Sbjct 1 MSAHCMLTGARPGFGNRISHSHRRTSRRFDPNIQTRRYWLPSENRHVRLRLSTKGIRTVD 60
Query 61 RDGIEAVVARLRRQGQRI 78
G+EA VAR+R +G RI
Sbjct 61 SIGVEAAVARIRARGVRI 78
Lambda K H
0.324 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 129734191374
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40