BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2069 Length=185 Score E Sequences producing significant alignments: (Bits) Value gi|15609206|ref|NP_216585.1| RNA polymerase sigma factor SigC [M... 365 1e-99 gi|254232237|ref|ZP_04925564.1| RNA polymerase sigma factor, ecf... 365 2e-99 gi|340627080|ref|YP_004745532.1| putative RNA polymerase sigma f... 364 3e-99 gi|15841558|ref|NP_336595.1| ECF subfamily RNA polymerase sigma ... 363 5e-99 gi|342859785|ref|ZP_08716438.1| RNA polymerase sigma factor SigC... 282 1e-74 gi|118465084|ref|YP_881623.1| RNA polymerase sigma factor SigC [... 280 5e-74 gi|240172458|ref|ZP_04751117.1| hypothetical protein MkanA1_2430... 280 7e-74 gi|254775091|ref|ZP_05216607.1| hypothetical protein MaviaA2_105... 280 1e-73 gi|41407912|ref|NP_960748.1| hypothetical protein MAP1814 [Mycob... 278 3e-73 gi|254819626|ref|ZP_05224627.1| hypothetical protein MintA_06874... 276 7e-73 gi|336462051|gb|EGO40897.1| RNA polymerase sigma factor, sigma-7... 275 2e-72 gi|333989626|ref|YP_004522240.1| RNA polymerase sigma factor Sig... 271 4e-71 gi|15827760|ref|NP_302023.1| RNA polymerase sigma factor SigC [M... 269 1e-70 gi|296165162|ref|ZP_06847710.1| RNA polymerase sigma-70 factor [... 259 1e-67 gi|183983052|ref|YP_001851343.1| RNA polymerase sigma factor, Si... 249 1e-64 gi|118617811|ref|YP_906143.1| RNA polymerase sigma factor SigC [... 249 1e-64 gi|169630509|ref|YP_001704158.1| RNA polymerase sigma-C factor [... 226 1e-57 gi|122921466|pdb|2O7G|A Chain A, Crystal Structure Of The Pribno... 224 6e-57 gi|134103055|ref|YP_001108716.1| RNA polymerase sigma factor [Sa... 206 2e-51 gi|269980459|gb|ACZ56332.1| putative RNA polymerase sigma factor... 204 5e-51 gi|291008990|ref|ZP_06566963.1| RNA polymerase sigma factor [Sac... 199 2e-49 gi|118619889|ref|YP_908221.1| ECF subfamily RNA polymerase sigma... 195 2e-48 gi|302526442|ref|ZP_07278784.1| RNA polymerase sigma-C factor [S... 192 1e-47 gi|302527422|ref|ZP_07279764.1| RNA polymerase sigma factor RpoE... 184 7e-45 gi|256376892|ref|YP_003100552.1| ECF subfamily RNA polymerase si... 183 8e-45 gi|300788372|ref|YP_003768663.1| RNA polymerase sigma-70 factor,... 183 9e-45 gi|340529966|gb|AEK45171.1| RNA polymerase sigma-70 factor, ECF ... 180 1e-43 gi|300788371|ref|YP_003768662.1| RNA polymerase sigma-70 factor,... 177 5e-43 gi|300784895|ref|YP_003765186.1| RNA polymerase sigma-70 factor,... 175 2e-42 gi|213966283|ref|ZP_03394466.1| RNA polymerase sigma factor [Cor... 171 3e-41 gi|145595112|ref|YP_001159409.1| sigma-70 region 4 domain-contai... 171 6e-41 gi|159038358|ref|YP_001537611.1| ECF subfamily RNA polymerase si... 169 1e-40 gi|227502451|ref|ZP_03932500.1| ECF family DNA-directed RNA poly... 169 1e-40 gi|340795447|ref|YP_004760910.1| ECF-family sigma factor C [Cory... 168 3e-40 gi|311741078|ref|ZP_07714903.1| RNA polymerase sigma-70 factor [... 167 9e-40 gi|255324169|ref|ZP_05365291.1| RNA polymerase sigma factor [Cor... 164 4e-39 gi|296392602|ref|YP_003657486.1| ECF subfamily RNA polymerase si... 164 5e-39 gi|237784814|ref|YP_002905519.1| RNA polymerase sigma factor [Co... 164 8e-39 gi|227487288|ref|ZP_03917604.1| RNA polymerase sigma factor [Cor... 162 1e-38 gi|300857591|ref|YP_003782574.1| ECF family sigma factor C [Cory... 161 3e-38 gi|302867485|ref|YP_003836122.1| sigma-70 family RNA polymerase ... 161 5e-38 gi|227505990|ref|ZP_03936039.1| ECF family DNA-directed RNA poly... 161 5e-38 gi|334564067|ref|ZP_08517058.1| RNA polymerase sigma factor [Cor... 160 5e-38 gi|296118036|ref|ZP_06836618.1| RNA polymerase sigma-70 factor, ... 160 8e-38 gi|315506107|ref|YP_004084994.1| ECF subfamily RNA polymerase si... 160 1e-37 gi|238059059|ref|ZP_04603768.1| sigma-70 region 4 domain-contain... 159 2e-37 gi|227832023|ref|YP_002833730.1| ECF-family sigma factor C [Cory... 159 2e-37 gi|161486000|ref|NP_736833.2| RNA polymerase sigma factor [Coryn... 158 3e-37 gi|317507428|ref|ZP_07965161.1| sigma-70 family RNA polymerase s... 158 4e-37 gi|23492058|dbj|BAC17033.1| putative RNA polymerase sigma factor... 157 9e-37 >gi|15609206|ref|NP_216585.1| RNA polymerase sigma factor SigC [Mycobacterium tuberculosis H37Rv] gi|31793252|ref|NP_855745.1| RNA polymerase sigma factor SigC [Mycobacterium bovis AF2122/97] gi|121637954|ref|YP_978178.1| RNA polymerase sigma factor SigC [Mycobacterium bovis BCG str. Pasteur 1173P2] 59 more sequence titles Length=185 Score = 365 bits (937), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR Sbjct 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED Sbjct 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP Sbjct 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 Query 181 DDLTG 185 DDLTG Sbjct 181 DDLTG 185 >gi|254232237|ref|ZP_04925564.1| RNA polymerase sigma factor, ecf subfamily sigC [Mycobacterium tuberculosis C] gi|254364882|ref|ZP_04980928.1| RNA polymerase sigma factor, ecf subfamily sigC [Mycobacterium tuberculosis str. Haarlem] gi|289574748|ref|ZP_06454975.1| RNA polymerase sigma factor SigC [Mycobacterium tuberculosis K85] gi|289758189|ref|ZP_06517567.1| RNA polymerase sigma factor sigC [Mycobacterium tuberculosis T85] gi|124601296|gb|EAY60306.1| RNA polymerase sigma factor, ecf subfamily sigC [Mycobacterium tuberculosis C] gi|134150396|gb|EBA42441.1| RNA polymerase sigma factor, ecf subfamily sigC [Mycobacterium tuberculosis str. Haarlem] gi|289539179|gb|EFD43757.1| RNA polymerase sigma factor SigC [Mycobacterium tuberculosis K85] gi|289713753|gb|EFD77765.1| RNA polymerase sigma factor sigC [Mycobacterium tuberculosis T85] Length=222 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR Sbjct 38 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 97 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED Sbjct 98 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 157 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP Sbjct 158 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 217 Query 181 DDLTG 185 DDLTG Sbjct 218 DDLTG 222 >gi|340627080|ref|YP_004745532.1| putative RNA polymerase sigma factor, ECF SUBfamily, SIGC [Mycobacterium canettii CIPT 140010059] gi|340005270|emb|CCC44424.1| putative RNA polymerase sigma factor, ECF SUBfamily, SIGC [Mycobacterium canettii CIPT 140010059] Length=185 Score = 364 bits (934), Expect = 3e-99, Method: Compositional matrix adjust. Identities = 184/185 (99%), Positives = 185/185 (100%), Gaps = 0/185 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR Sbjct 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED Sbjct 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 LVEVTTMIADLTT+QREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP Sbjct 121 LVEVTTMIADLTTEQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 Query 181 DDLTG 185 DDLTG Sbjct 181 DDLTG 185 >gi|15841558|ref|NP_336595.1| ECF subfamily RNA polymerase sigma factor [Mycobacterium tuberculosis CDC1551] gi|148823283|ref|YP_001288038.1| RNA polymerase sigma factor SigC [Mycobacterium tuberculosis F11] gi|253798874|ref|YP_003031875.1| RNA polymerase sigma factor sigC [Mycobacterium tuberculosis KZN 1435] 10 more sequence titles Length=311 Score = 363 bits (933), Expect = 5e-99, Method: Compositional matrix adjust. Identities = 185/185 (100%), Positives = 185/185 (100%), Gaps = 0/185 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR Sbjct 127 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 186 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED Sbjct 187 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 246 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP Sbjct 247 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 306 Query 181 DDLTG 185 DDLTG Sbjct 307 DDLTG 311 >gi|342859785|ref|ZP_08716438.1| RNA polymerase sigma factor SigC [Mycobacterium colombiense CECT 3035] gi|342132917|gb|EGT86137.1| RNA polymerase sigma factor SigC [Mycobacterium colombiense CECT 3035] Length=184 Score = 282 bits (722), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 155/185 (84%), Positives = 165/185 (90%), Gaps = 1/185 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTA SDDEAVT LALSAA+GN RALE+FIKATQQDVWRFVAYLSD G+ADDLTQETFLR Sbjct 1 MTAP-SDDEAVTELALSAARGNARALESFIKATQQDVWRFVAYLSDTGNADDLTQETFLR 59 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 AIGAI RFS RSSARTWLL+IAR VVADHIRH++SRPR GA PEH++ GDRHARGFED Sbjct 60 AIGAIERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAALGADPEHVVRGDRHARGFED 119 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 LVEVTTMIA+L +QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E Sbjct 120 LVEVTTMIANLNAEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGER 179 Query 181 DDLTG 185 LTG Sbjct 180 GHLTG 184 >gi|118465084|ref|YP_881623.1| RNA polymerase sigma factor SigC [Mycobacterium avium 104] gi|118166371|gb|ABK67268.1| RNA polymerase sigma factor, sigma-70 family protein [Mycobacterium avium 104] Length=401 Score = 280 bits (717), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 153/180 (85%), Positives = 161/180 (90%), Gaps = 0/180 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 SDDEAVT LALSAA+GN RALEAFIKATQQDVWRFVAYL D GSADDLTQETFLRAIGAI Sbjct 222 SDDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLCDAGSADDLTQETFLRAIGAI 281 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 RFS RSSARTWLL+IAR VVADHIRH++SRPR GA PEH++ DRHARGFEDLVEVT Sbjct 282 ERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAAVGADPEHVLRTDRHARGFEDLVEVT 341 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG 185 TMIA L +QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E +DLTG Sbjct 342 TMIAGLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERNDLTG 401 >gi|240172458|ref|ZP_04751117.1| hypothetical protein MkanA1_24300 [Mycobacterium kansasii ATCC 12478] Length=445 Score = 280 bits (716), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 156/185 (85%), Positives = 166/185 (90%), Gaps = 1/185 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTA A+DDEAVT LAL+AA GN RALEAFIKATQQDVWRFV YLSD GSADDLTQETFLR Sbjct 262 MTA-ATDDEAVTELALAAATGNARALEAFIKATQQDVWRFVTYLSDAGSADDLTQETFLR 320 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 AIG+I RFS RSSARTWLL+IAR VVADHIR++RSRPR+ GA PE L+DG HARGFE+ Sbjct 321 AIGSIHRFSGRSSARTWLLSIARRVVADHIRYLRSRPRSAPGADPERLLDGHAHARGFEE 380 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 LVEVTTMIA LT DQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLAD E Sbjct 381 LVEVTTMIAQLTADQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADTER 440 Query 181 DDLTG 185 D+LTG Sbjct 441 DELTG 445 >gi|254775091|ref|ZP_05216607.1| hypothetical protein MaviaA2_10516 [Mycobacterium avium subsp. avium ATCC 25291] Length=453 Score = 280 bits (715), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 153/180 (85%), Positives = 160/180 (89%), Gaps = 0/180 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 SDDEAVT LALSAA+GN RALEAFIKATQQDVWRFVAYL D GSADDLTQETFLRAIGAI Sbjct 274 SDDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLCDAGSADDLTQETFLRAIGAI 333 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 RFS RSSARTWLL+IAR VVADHIRH++SRPR GA PEH++ DRHARGFEDLVEVT Sbjct 334 ERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAAVGADPEHVLRTDRHARGFEDLVEVT 393 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG 185 TMIA L +QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E DLTG Sbjct 394 TMIAGLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERSDLTG 453 >gi|41407912|ref|NP_960748.1| hypothetical protein MAP1814 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396266|gb|AAS04131.1| hypothetical protein MAP_1814 [Mycobacterium avium subsp. paratuberculosis K-10] Length=459 Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 152/180 (85%), Positives = 159/180 (89%), Gaps = 0/180 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 SDDEAVT LALSAA+GN RALEAFIKATQQDVWRFVAYL D GSADDL QETFLRAIGAI Sbjct 280 SDDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLCDAGSADDLPQETFLRAIGAI 339 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 RFS RSSARTWLL+IAR VVADHIRH++SRPR GA PEH++ DRHARGFEDLVEVT Sbjct 340 ERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAAVGADPEHVLRTDRHARGFEDLVEVT 399 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG 185 TMIA L +QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E DLTG Sbjct 400 TMIASLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERSDLTG 459 >gi|254819626|ref|ZP_05224627.1| hypothetical protein MintA_06874 [Mycobacterium intracellulare ATCC 13950] Length=433 Score = 276 bits (707), Expect = 7e-73, Method: Compositional matrix adjust. Identities = 151/180 (84%), Positives = 160/180 (89%), Gaps = 0/180 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 SDDEAVT LALSAA+GN RALEAFIKATQQDVWRFVAYLSD G+ADDL QETFLRAIGAI Sbjct 254 SDDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLSDAGNADDLAQETFLRAIGAI 313 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 RFS RSSARTWLL+IAR VVADHIR ++SRPR GA PEH++ GDR+ARGFEDLVEVT Sbjct 314 ERFSGRSSARTWLLSIARRVVADHIRQLQSRPRAALGADPEHVVRGDRNARGFEDLVEVT 373 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG 185 TMIA L +QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E DLTG Sbjct 374 TMIAGLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERSDLTG 433 >gi|336462051|gb|EGO40897.1| RNA polymerase sigma factor, sigma-70 family [Mycobacterium avium subsp. paratuberculosis S397] Length=459 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 151/180 (84%), Positives = 158/180 (88%), Gaps = 0/180 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 S DEAVT LALSAA+GN RALEAFIKATQQDVWRFVAYL D GSADDL QETFLRAIGAI Sbjct 280 SGDEAVTELALSAARGNARALEAFIKATQQDVWRFVAYLCDAGSADDLPQETFLRAIGAI 339 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 RFS RSSARTWLL+IAR VVADHIRH++SRPR GA PEH++ DRHARGFEDLVEVT Sbjct 340 ERFSGRSSARTWLLSIARRVVADHIRHLQSRPRAAVGADPEHVLRTDRHARGFEDLVEVT 399 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG 185 TMIA L +QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E DLTG Sbjct 400 TMIASLNPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADGERSDLTG 459 >gi|333989626|ref|YP_004522240.1| RNA polymerase sigma factor SigC [Mycobacterium sp. JDM601] gi|333485594|gb|AEF34986.1| RNA polymerase sigma factor SigC [Mycobacterium sp. JDM601] Length=462 Score = 271 bits (693), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 144/180 (80%), Positives = 159/180 (89%), Gaps = 0/180 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 DD+AVTALAL+AA G+ RALEAFIKATQ DVWRFVAYL D G+ADDLTQETFLRAIGAI Sbjct 283 GDDDAVTALALAAAAGDSRALEAFIKATQHDVWRFVAYLFDGGNADDLTQETFLRAIGAI 342 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 PRFS RSSARTWLLAIAR VVADHIR++RSRPRT GA PE L++ +R +RGFED+VEV Sbjct 343 PRFSGRSSARTWLLAIARRVVADHIRYLRSRPRTAPGADPELLLNRERPSRGFEDVVEVN 402 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLTG 185 T+IA L+ +QREALLLTQL GLSY DAAAVCGCPVGTIRSRVARARDALLAD E D+LTG Sbjct 403 TLIAGLSDEQREALLLTQLFGLSYQDAAAVCGCPVGTIRSRVARARDALLADPERDELTG 462 >gi|15827760|ref|NP_302023.1| RNA polymerase sigma factor SigC [Mycobacterium leprae TN] gi|221230237|ref|YP_002503653.1| RNA polymerase sigma factor SigC [Mycobacterium leprae Br4923] gi|13093312|emb|CAC30398.1| ECF subfamily sigma factor [Mycobacterium leprae] gi|219933344|emb|CAR71542.1| ECF subfamily sigma factor [Mycobacterium leprae Br4923] Length=184 Score = 269 bits (688), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/181 (82%), Positives = 160/181 (89%), Gaps = 0/181 (0%) Query 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 +S DEAVT LAL+AA+G+ RALEAFIKATQQDVWRFVAYLSDVG+ADDLTQETFLRAIGA Sbjct 4 SSGDEAVTDLALAAARGSKRALEAFIKATQQDVWRFVAYLSDVGNADDLTQETFLRAIGA 63 Query 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 I RFS SS RTWLLAIAR VVADHIR ++RPRTT PE +++ DRHARGFEDLVEV Sbjct 64 IERFSGHSSGRTWLLAIARRVVADHIRRAQTRPRTTFDGYPERMLNADRHARGFEDLVEV 123 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDLT 184 TTMIA+L T+QREALLLTQLLGL YADAAAVCGCPVGTIRSRVARARDALLAD E + LT Sbjct 124 TTMIANLATEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRVARARDALLADTEHNHLT 183 Query 185 G 185 G Sbjct 184 G 184 >gi|296165162|ref|ZP_06847710.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899470|gb|EFG78928.1| RNA polymerase sigma-70 factor [Mycobacterium parascrofulaceum ATCC BAA-614] Length=457 Score = 259 bits (663), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/163 (86%), Positives = 148/163 (91%), Gaps = 0/163 (0%) Query 5 ASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGA 64 +SDDEAVT LAL+AA+GN RALEAFIKATQQDVWRFV YLSD GSADDLTQETFLRAIGA Sbjct 276 SSDDEAVTELALAAARGNDRALEAFIKATQQDVWRFVTYLSDAGSADDLTQETFLRAIGA 335 Query 65 IPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEV 124 I RFS RSSARTWLL+IAR VVADHIRHV+SRPR GA PEH++ GDRHARGFEDLVEV Sbjct 336 IERFSGRSSARTWLLSIARRVVADHIRHVQSRPRAALGADPEHVLRGDRHARGFEDLVEV 395 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRV 167 TTMIA LT +QREALLLTQLLGL YADAAAVCGCPVGTIRSRV Sbjct 396 TTMIASLTPEQREALLLTQLLGLPYADAAAVCGCPVGTIRSRV 438 >gi|183983052|ref|YP_001851343.1| RNA polymerase sigma factor, SigC [Mycobacterium marinum M] gi|183176378|gb|ACC41488.1| RNA polymerase sigma factor, SigC [Mycobacterium marinum M] Length=184 Score = 249 bits (637), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/182 (84%), Positives = 160/182 (88%), Gaps = 0/182 (0%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 T+ DDEAVTALAL+AA G+ RA EAFIKATQQDVWRFVAYLSD GSADDLTQETFLRAIG Sbjct 3 TSPDDEAVTALALAAADGDARAFEAFIKATQQDVWRFVAYLSDAGSADDLTQETFLRAIG 62 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 AI RF RSSARTWLLAIAR VVADHIRH+++RPR G PE L+D R ARGFEDLVE Sbjct 63 AIRRFGGRSSARTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDLVE 122 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 183 VTTMIA LT+DQREALLLTQLLGLSY DAAAVCGCPVGTIRSRVARARDALLAD E DDL Sbjct 123 VTTMIAQLTSDQREALLLTQLLGLSYTDAAAVCGCPVGTIRSRVARARDALLADNERDDL 182 Query 184 TG 185 TG Sbjct 183 TG 184 >gi|118617811|ref|YP_906143.1| RNA polymerase sigma factor SigC [Mycobacterium ulcerans Agy99] gi|118569921|gb|ABL04672.1| RNA polymerase sigma factor, SigC [Mycobacterium ulcerans Agy99] Length=186 Score = 249 bits (636), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 152/182 (84%), Positives = 160/182 (88%), Gaps = 0/182 (0%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 T+ DDEAVTALAL+AA G+ RA EAFIKATQQDVWRFVAYLSD GSADDLTQETFLRAIG Sbjct 5 TSPDDEAVTALALAAADGDARAFEAFIKATQQDVWRFVAYLSDAGSADDLTQETFLRAIG 64 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 AI RF RSSARTWLLAIAR VVADHIRH+++RPR G PE L+D R ARGFEDLVE Sbjct 65 AIRRFGGRSSARTWLLAIARRVVADHIRHLQARPRAAHGVDPELLLDRGRRARGFEDLVE 124 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 183 VTTMIA LT+DQREALLLTQLLGLSY DAAAVCGCPVGTIRSRVARARDALLAD E DDL Sbjct 125 VTTMIAQLTSDQREALLLTQLLGLSYTDAAAVCGCPVGTIRSRVARARDALLADNERDDL 184 Query 184 TG 185 TG Sbjct 185 TG 186 >gi|169630509|ref|YP_001704158.1| RNA polymerase sigma-C factor [Mycobacterium abscessus ATCC 19977] gi|169242476|emb|CAM63504.1| Probable RNA polymerase sigma-C factor [Mycobacterium abscessus] Length=183 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 115/183 (63%), Positives = 144/183 (79%), Gaps = 1/183 (0%) Query 3 ATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAI 62 AT +DDE + LALSA +G+ ALE+ +KATQ DVWRFVAYL+D G ADDLTQET+LRA+ Sbjct 2 ATGTDDEQLLELALSAGRGDQSALESLVKATQGDVWRFVAYLADSGVADDLTQETYLRAL 61 Query 63 GAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLV 122 GA+PRF+ RS+ RTWLL+IAR VVADHIRH++SRPR GA E R FE+LV Sbjct 62 GALPRFAGRSTVRTWLLSIARRVVADHIRHLKSRPRIAHGADLEE-ASLRRPTHRFEELV 120 Query 123 EVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDD 182 E+ +++A L D+REAL+LTQ++GLSYA+ A VCGC +GTIRSRVARARD L+ AEP++ Sbjct 121 ELKSLLAALDDDRREALVLTQVVGLSYAETADVCGCAIGTIRSRVARARDELIGWAEPEN 180 Query 183 LTG 185 LTG Sbjct 181 LTG 183 >gi|122921466|pdb|2O7G|A Chain A, Crystal Structure Of The Pribnow Box Recognition Region Of Sigc From Mycobacterium Tuberculosis gi|122921467|pdb|2O7G|B Chain B, Crystal Structure Of The Pribnow Box Recognition Region Of Sigc From Mycobacterium Tuberculosis Length=112 Score = 224 bits (570), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/112 (100%), Positives = 112/112 (100%), Gaps = 0/112 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR Sbjct 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGD 112 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGD Sbjct 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGD 112 >gi|134103055|ref|YP_001108716.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338] gi|133915678|emb|CAM05791.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338] Length=184 Score = 206 bits (523), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 106/186 (57%), Positives = 139/186 (75%), Gaps = 3/186 (1%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 M+ +A+DD +T LAL+A G+ RALE FI+ATQ+DVWRFVA+L+ V ADDL QET++R Sbjct 1 MSRSAADDAWLTELALAAGTGDRRALEEFIRATQRDVWRFVAHLASVEQADDLAQETYVR 60 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 + ++PRF+ R+SARTWLL+IAR VV D +R+ RSRPRTT A E +R A GFED Sbjct 61 VLRSLPRFAGRASARTWLLSIARRVVVDQVRYARSRPRTT--AAVEWATAAERPAPGFED 118 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA-E 179 +VE+ ++A L +RE LLLTQ+LGLSY + A +CGCPVGT+RSRVARAR+ L+A E Sbjct 119 IVELNMLLAGLDEQRREVLLLTQVLGLSYQETADICGCPVGTVRSRVARAREELIAGTRE 178 Query 180 PDDLTG 185 + TG Sbjct 179 ESEETG 184 >gi|269980459|gb|ACZ56332.1| putative RNA polymerase sigma factor [Mycobacterium chubuense NBB4] Length=235 Score = 204 bits (519), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 105/175 (60%), Positives = 133/175 (76%), Gaps = 6/175 (3%) Query 8 DEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPR 67 D VT LAL+A +G+ AL F++ T++DVWR VAYLS+VG+ADDLTQETFLRAIG++P Sbjct 30 DAEVTRLALAAGRGDNDALGQFVRYTRRDVWRLVAYLSNVGTADDLTQETFLRAIGSLPS 89 Query 68 FSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLID-----GDRHA-RGFEDL 121 FS RSSARTWL +IAR VV D IR R RPRT ++++ G+R A GFED+ Sbjct 90 FSGRSSARTWLFSIARRVVVDQIRRDRCRPRTCAATHFSNVVELSRFRGNRQAVAGFEDI 149 Query 122 VEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 VE+ ++ L ++R+ALLLTQ+LGL+YA+AA VCGCPVGTIRSRVARAR+ LLA Sbjct 150 VELRILLDGLDVERRQALLLTQVLGLTYAEAATVCGCPVGTIRSRVARAREQLLA 204 >gi|291008990|ref|ZP_06566963.1| RNA polymerase sigma factor [Saccharopolyspora erythraea NRRL 2338] Length=174 Score = 199 bits (506), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/176 (58%), Positives = 132/176 (75%), Gaps = 3/176 (1%) Query 11 VTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSA 70 +T LAL+A G+ RALE FI+ATQ+DVWRFVA+L+ V ADDL QET++R + ++PRF+ Sbjct 1 MTELALAAGTGDRRALEEFIRATQRDVWRFVAHLASVEQADDLAQETYVRVLRSLPRFAG 60 Query 71 RSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTTMIAD 130 R+SARTWLL+IAR VV D +R+ RSRPRTT A E +R A GFED+VE+ ++A Sbjct 61 RASARTWLLSIARRVVVDQVRYARSRPRTT--AAVEWATAAERPAPGFEDIVELNMLLAG 118 Query 131 LTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA-EPDDLTG 185 L +RE LLLTQ+LGLSY + A +CGCPVGT+RSRVARAR+ L+A E + TG Sbjct 119 LDEQRREVLLLTQVLGLSYQETADICGCPVGTVRSRVARAREELIAGTREESEETG 174 >gi|118619889|ref|YP_908221.1| ECF subfamily RNA polymerase sigma factor [Mycobacterium ulcerans Agy99] gi|183980297|ref|YP_001848588.1| ECF subfamily RNA polymerase sigma factor [Mycobacterium marinum M] gi|118571999|gb|ABL06750.1| RNA polymerase sigma factor, ECF subfamily, SigC_1 [Mycobacterium ulcerans Agy99] gi|183173623|gb|ACC38733.1| RNA polymerase sigma factor, ECF subfamily, SigC_1 [Mycobacterium marinum M] Length=184 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 102/182 (57%), Positives = 126/182 (70%), Gaps = 0/182 (0%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 T DE +T LA++A +G+ AL FI+ATQ+DVWR VAYLSD ADDLTQETFLRAIG Sbjct 3 TGGADEQITVLAMAAGRGDRAALAEFIEATQRDVWRLVAYLSDPACADDLTQETFLRAIG 62 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 A+PRF+ RS+ARTWL +IAR VV D IR+ RPR A + R FED+VE Sbjct 63 ALPRFAGRSNARTWLFSIARRVVVDQIRYKTRRPRPAYVADLGEALGQARRGSRFEDIVE 122 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 183 + ++ L +REAL+ TQ+LGLSYA+AA +CG P+GTIRSRVARARD LL A + Sbjct 123 IRLLLDGLDEKRREALIFTQVLGLSYAEAAQICGSPIGTIRSRVARARDDLLRAAREGER 182 Query 184 TG 185 G Sbjct 183 AG 184 >gi|302526442|ref|ZP_07278784.1| RNA polymerase sigma-C factor [Streptomyces sp. AA4] gi|302435337|gb|EFL07153.1| RNA polymerase sigma-C factor [Streptomyces sp. AA4] Length=189 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/185 (56%), Positives = 135/185 (73%), Gaps = 5/185 (2%) Query 2 TATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRA 61 T +DDE +TALAL+A +G+ ALE++++ATQ D WRF+A+ + ADDLTQET+LRA Sbjct 3 TGRDNDDERITALALAAGRGDRVALESWVRATQADAWRFLAHRTSPAEADDLTQETYLRA 62 Query 62 IGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHAR----G 117 G++PRF+ RSS+RTWLL+IAR VV D IR RPR + A + + ++ AR G Sbjct 63 FGSLPRFAGRSSSRTWLLSIARRVVVDRIRARSVRPRESTTADWQRAAE-EQSARTRTAG 121 Query 118 FEDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLAD 177 FEDL+E+ ++ L D+REAL+LTQ LGLSYA+AA VCGCPVGT+RSRV+RARD LL Sbjct 122 FEDLIELGLLLDTLDEDRREALVLTQFLGLSYAEAAEVCGCPVGTVRSRVSRARDDLLRA 181 Query 178 AEPDD 182 E +D Sbjct 182 QEEND 186 >gi|302527422|ref|ZP_07279764.1| RNA polymerase sigma factor RpoE [Streptomyces sp. AA4] gi|302436317|gb|EFL08133.1| RNA polymerase sigma factor RpoE [Streptomyces sp. AA4] Length=252 Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/175 (55%), Positives = 129/175 (74%), Gaps = 2/175 (1%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DDE +TALAL+AA+G+ RA E++++ATQ D WRFVA+L+D ADDLTQET++R++ A+P Sbjct 72 DDERITALALAAARGDRRAFESWVRATQADTWRFVAHLADSTVADDLTQETYVRSVTALP 131 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTTR--GARPEHLIDGDRHARGFEDLVEV 124 RF+ RSS+RTWLL+IAR VV DH R RP++ R RGFED+VEV Sbjct 132 RFAGRSSSRTWLLSIARRVVVDHFRARSVRPQSFSRDWESAAAAESARRSGRGFEDVVEV 191 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAE 179 ++ L ++REA++LTQ+LG SYA+AA +C CP+GT+RSRVARAR+ LLA E Sbjct 192 GLLLDGLHPERREAIVLTQVLGYSYAEAAEICDCPIGTVRSRVARAREDLLAARE 246 >gi|256376892|ref|YP_003100552.1| ECF subfamily RNA polymerase sigma-24 subunit [Actinosynnema mirum DSM 43827] gi|255921195|gb|ACU36706.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Actinosynnema mirum DSM 43827] Length=192 Score = 183 bits (465), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 99/177 (56%), Positives = 128/177 (73%), Gaps = 4/177 (2%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 + T + D+ VT AL A G+ ALE F++ TQ+DVWRF A+L+ V ADDL+QET+ R Sbjct 6 VVTTPTPDDEVTRWALRARSGDRNALEQFVRGTQRDVWRFTAHLAGVDVADDLSQETYAR 65 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRH--ARGF 118 A+ ++ RF+ RSSARTWLL IAR VV D +R +SRPR + GA + + + DR A GF Sbjct 66 ALTSLHRFAGRSSARTWLLVIARRVVVDQVRMAQSRPRLSPGA--DWVREADRRPAATGF 123 Query 119 EDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 ED VE+ ++ L D+REAL+LTQ+LGLSYA+AA V GCPVGTIRSRVARARD L+ Sbjct 124 EDAVELNLLLDSLDQDRREALVLTQVLGLSYAEAADVAGCPVGTIRSRVARARDDLM 180 >gi|300788372|ref|YP_003768663.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|299797886|gb|ADJ48261.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|340529967|gb|AEK45172.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis mediterranei S699] Length=190 Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 96/174 (56%), Positives = 128/174 (74%), Gaps = 4/174 (2%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DDE +TALAL+AA+G+ RA ++++TQ DVWRFVA+L+D ADDLTQET+ RA+ ++ Sbjct 8 DDERITALALAAARGDQRAYADWVRSTQADVWRFVAHLTDPVVADDLTQETYARAVTSLS 67 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTT----RGARPEHLIDGDRHARGFEDLV 122 RF+ RSS+RTWLL+IAR V DH R +RP+ + A E A GFE++V Sbjct 68 RFAGRSSSRTWLLSIARRAVVDHFRARSARPQLSGQDWTAAAEEQSARSRAAASGFEEVV 127 Query 123 EVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 EV ++ DL ++REAL+LTQLLG +YA+AA +CGCPVGT+RSRVARAR+ LLA Sbjct 128 EVGVLLRDLDEERREALVLTQLLGHTYAEAAEICGCPVGTVRSRVARAREDLLA 181 >gi|340529966|gb|AEK45171.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis mediterranei S699] Length=191 Score = 180 bits (456), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/178 (56%), Positives = 124/178 (70%), Gaps = 2/178 (1%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 MT +DD +T AL A +G+G ALE F+++TQ VWRFVA L+D SADDLTQET+LR Sbjct 1 MTPERADDADITRWALLAGRGDGPALEQFLRSTQPYVWRFVAGLADAQSADDLTQETYLR 60 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARG--F 118 A+G++PRF SSARTWLL+IAR VADHIR +++RPR E + +R Sbjct 61 ALGSLPRFKGDSSARTWLLSIARRTVADHIRALQARPRQASVTDWEAAAERAEPSRAERI 120 Query 119 EDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 ++ V + ++ L D+R A +LTQ LGLSY DAA VCGCPVGTIRSRVARAR+ LLA Sbjct 121 DEQVVLDQLVKALDPDRRVAFVLTQTLGLSYVDAAQVCGCPVGTIRSRVARAREDLLA 178 >gi|300788371|ref|YP_003768662.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|299797885|gb|ADJ48260.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] Length=222 Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 97/178 (55%), Positives = 124/178 (70%), Gaps = 2/178 (1%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 +T +DD +T AL A +G+G ALE F+++TQ VWRFVA L+D SADDLTQET+LR Sbjct 32 VTPERADDADITRWALLAGRGDGPALEQFLRSTQPYVWRFVAGLADAQSADDLTQETYLR 91 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARG--F 118 A+G++PRF SSARTWLL+IAR VADHIR +++RPR E + +R Sbjct 92 ALGSLPRFKGDSSARTWLLSIARRTVADHIRALQARPRQASVTDWEAAAERAEPSRAERI 151 Query 119 EDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 ++ V + ++ L D+R A +LTQ LGLSY DAA VCGCPVGTIRSRVARAR+ LLA Sbjct 152 DEQVVLDQLVKALDPDRRVAFVLTQTLGLSYVDAAQVCGCPVGTIRSRVARAREDLLA 209 >gi|300784895|ref|YP_003765186.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|299794409|gb|ADJ44784.1| RNA polymerase sigma-70 factor, ECF subfamily [Amycolatopsis mediterranei U32] gi|340526325|gb|AEK41530.1| RNA polymerase sigma-70 factor, ECF subfamily protein [Amycolatopsis mediterranei S699] Length=183 Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 99/172 (58%), Positives = 131/172 (77%), Gaps = 6/172 (3%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DD+ VTALAL+A +G+ RALEA++ ATQ D+WRF+A+L+D +ADDLTQET+LRA G++ Sbjct 6 DDDRVTALALAAGRGDRRALEAWVSATQADIWRFLAHLTDTAAADDLTQETYLRAFGSLR 65 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPR---TTRGARPEHLIDGDRHARGFEDLVE 123 RF+ RSS+RTWLL+IAR VV D IR +RP+ T A + D A GFE+LVE Sbjct 66 RFAGRSSSRTWLLSIARRVVVDQIRAAGARPKIAATDWEAAAQRTPD---PAAGFEELVE 122 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 + ++ L D+RE L+LTQ+LGLSYA+AA VCGCP+GT+RSRVARAR+ L+ Sbjct 123 LRLLLDGLEPDRREVLVLTQVLGLSYAEAADVCGCPIGTVRSRVARAREDLI 174 >gi|213966283|ref|ZP_03394466.1| RNA polymerase sigma factor [Corynebacterium amycolatum SK46] gi|213951056|gb|EEB62455.1| RNA polymerase sigma factor [Corynebacterium amycolatum SK46] Length=192 Score = 171 bits (434), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 88/171 (52%), Positives = 121/171 (71%), Gaps = 1/171 (0%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 S+DE +T LAL A +G+ AL F++ TQ+DVWR VA+L V +ADDLTQET+LR +GA+ Sbjct 8 SNDEYITQLALKAGRGDQAALTEFVRLTQKDVWRLVAHLGGVDAADDLTQETYLRVMGAL 67 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 PRF+ARSSARTWLL++AR V D +RH +RP+ + E+ + + +L + Sbjct 68 PRFAARSSARTWLLSLARRVWVDSVRHDSARPKKS-AVEVENAAEQFTTGESWSELADAR 126 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 ++ L ++REAL+LTQ+LG SYA+AA + GC VGTIRSRVARAR L+A Sbjct 127 VLLEQLPEERREALILTQVLGYSYAEAAEIAGCRVGTIRSRVARARRDLVA 177 >gi|145595112|ref|YP_001159409.1| sigma-70 region 4 domain-containing protein [Salinispora tropica CNB-440] gi|145304449|gb|ABP55031.1| Sigma-70, region 4 type 2 [Salinispora tropica CNB-440] Length=216 Score = 171 bits (432), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 94/172 (55%), Positives = 119/172 (70%), Gaps = 4/172 (2%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 T +DD VT+ AL A +G+ A AFI+ATQQ V RF+A L ADDLTQET+LRA+ Sbjct 32 TVTDDTDVTSWALDAGRGDQAAAAAFIRATQQQVRRFLAALISPAEADDLTQETYLRALR 91 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 ++P F+ RSSARTWL +IAR V DH+R SRPRT + D GF+ V Sbjct 92 SLPSFAGRSSARTWLFSIARRVAVDHVRAATSRPRTVPMTDSHDVADES----GFDRQVA 147 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 + +IA L TD+REA ++TQ+LGLSYA+AA VCGCPVGTIRSRV+RAR+ L+ Sbjct 148 LEQIIAALPTDRREAFVVTQVLGLSYAEAAQVCGCPVGTIRSRVSRAREDLV 199 >gi|159038358|ref|YP_001537611.1| ECF subfamily RNA polymerase sigma-24 factor [Salinispora arenicola CNS-205] gi|157917193|gb|ABV98620.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Salinispora arenicola CNS-205] Length=188 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/170 (55%), Positives = 117/170 (69%), Gaps = 2/170 (1%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 +DD VT+ AL A +G+ A AF++ATQQ V RF+A L ADDL QET+LRA+ ++ Sbjct 2 TDDTEVTSWALEAGRGDRDAAAAFVRATQQQVRRFLAALVSPVEADDLAQETYLRALRSL 61 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVT 125 P F+ RSSARTWL +IAR V DH+R SRPRT A + D D GF+ V + Sbjct 62 PSFAGRSSARTWLFSIARRVAVDHVRAATSRPRTIPMADSHDVADAD--GSGFDRQVALE 119 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 +IA L D+REA ++TQ+LGLSYA+AA VCGCPVGTIRSRV RAR+ L+ Sbjct 120 QLIAALPADRREAFVVTQVLGLSYAEAAEVCGCPVGTIRSRVFRAREDLV 169 >gi|227502451|ref|ZP_03932500.1| ECF family DNA-directed RNA polymerase sigma subunit SigY [Corynebacterium accolens ATCC 49725] gi|227076820|gb|EEI14783.1| ECF family DNA-directed RNA polymerase sigma subunit SigY [Corynebacterium accolens ATCC 49725] Length=180 Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 91/176 (52%), Positives = 120/176 (69%), Gaps = 0/176 (0%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 +A+DD VT LAL A +G+ AL FIKATQ DVWR +A+L ADDLTQET+LR IG Sbjct 5 SAADDARVTELALRAGRGDRAALTEFIKATQDDVWRLLAHLGGPEIADDLTQETYLRVIG 64 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 A+PRF+ARSSARTWLL++AR V D+IRH +RPR + + + ++ + D ++ Sbjct 65 ALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATQYEDAMSSAAENSGSWSDWID 124 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAE 179 +I L D+REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR L+ A Sbjct 125 ARALIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARKDLIEGAN 180 >gi|340795447|ref|YP_004760910.1| ECF-family sigma factor C [Corynebacterium variabile DSM 44702] gi|340535357|gb|AEK37837.1| ECF-family sigma factor C [Corynebacterium variabile DSM 44702] Length=219 Score = 168 bits (426), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 97/184 (53%), Positives = 124/184 (68%), Gaps = 14/184 (7%) Query 3 ATASD----DEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETF 58 A ASD D AVT LAL A G+ +AL FI+AT DVWR +A+L+D ADDLTQET+ Sbjct 14 AAASDRTDADAAVTDLALKAGAGDRQALSEFIEATHDDVWRLLAHLADTDRADDLTQETY 73 Query 59 LRAIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTT-------RGARPEHLIDG 111 LR +GA+PRF+ARSSARTW+L++AR V D +RH +RPR + G P G Sbjct 74 LRVLGALPRFAARSSARTWILSLARRVWVDSVRHDMARPRKSVEEWEDAAGQSPSPDTTG 133 Query 112 DRHARGFEDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR 171 D + + +LV+ ++ +L D+REAL LTQ+LG SYA+AA +CG VGTIRSRVARAR Sbjct 134 D---QAWAELVDARALLDNLAPDRREALTLTQVLGYSYAEAADICGVRVGTIRSRVARAR 190 Query 172 DALL 175 LL Sbjct 191 ADLL 194 >gi|311741078|ref|ZP_07714903.1| RNA polymerase sigma-70 factor [Corynebacterium pseudogenitalium ATCC 33035] gi|311303880|gb|EFQ79958.1| RNA polymerase sigma-70 factor [Corynebacterium pseudogenitalium ATCC 33035] Length=180 Score = 167 bits (422), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 90/173 (53%), Positives = 119/173 (69%), Gaps = 0/173 (0%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 +A+DD VT LAL A +G+ AL FIKATQ DVWR +A+L ADDLTQET+LR I Sbjct 5 SAADDARVTDLALRAGRGDRAALTEFIKATQDDVWRLLAHLGGPEGADDLTQETYLRVIS 64 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 A+PRF+ARSSARTWLL++AR V D+IRH +RPR + + + + + + ++ Sbjct 65 ALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAMGAAPEESAAWSEWID 124 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 T+I L D+REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR L+A Sbjct 125 ARTLIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARKDLIA 177 >gi|255324169|ref|ZP_05365291.1| RNA polymerase sigma factor [Corynebacterium tuberculostearicum SK141] gi|255298685|gb|EET77980.1| RNA polymerase sigma factor [Corynebacterium tuberculostearicum SK141] Length=180 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 90/173 (53%), Positives = 118/173 (69%), Gaps = 0/173 (0%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 +A+DD VT LAL A G+ AL FIKATQ DVWR +A+L ADDLTQET+LR I Sbjct 5 SAADDARVTDLALRAGCGDRAALTEFIKATQDDVWRLLAHLGGPEGADDLTQETYLRVIS 64 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVE 123 A+PRF+ARSSARTWLL++AR V D+IRH +RPR + + + + + + ++ Sbjct 65 ALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAMGAAPEESAAWSEWID 124 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 T+I L D+REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR L+A Sbjct 125 ARTLIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARKDLIA 177 >gi|296392602|ref|YP_003657486.1| ECF subfamily RNA polymerase sigma-24 factor [Segniliparus rotundus DSM 44985] gi|296179749|gb|ADG96655.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Segniliparus rotundus DSM 44985] Length=206 Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 89/161 (56%), Positives = 114/161 (71%), Gaps = 6/161 (3%) Query 20 KGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLL 79 +G+ +AL AF+ TQ+DVWRF+A+L+D ADDLTQETFLRA+ +I RF RS+ R WLL Sbjct 32 RGDRKALAAFVAETQRDVWRFLAHLTDPTQADDLTQETFLRAMTSIARFEGRSNGRVWLL 91 Query 80 AIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFE-----DLVEVTTMIADLTTD 134 +IAR VV D IR +RPR+ GA P L R E +L V ++ DL + Sbjct 92 SIARRVVVDQIRSAVARPRSAPGADP-GLAPVVRRREVAEHGAQVELSLVKMLLEDLAPE 150 Query 135 QREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 +REAL+LTQ+LGLSYA+AAAVC CPVGT+RSRVARAR+ L+ Sbjct 151 RREALVLTQMLGLSYAEAAAVCDCPVGTVRSRVARAREDLV 191 >gi|237784814|ref|YP_002905519.1| RNA polymerase sigma factor [Corynebacterium kroppenstedtii DSM 44385] gi|237757726|gb|ACR16976.1| ECF-family sigma factor C [Corynebacterium kroppenstedtii DSM 44385] Length=228 Score = 164 bits (414), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 90/177 (51%), Positives = 122/177 (69%), Gaps = 10/177 (5%) Query 6 SDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAI 65 DD VTALAL A +G+ AL FI+ TQ+DVWR +A+L+D+ ADDLTQET+LR I A+ Sbjct 32 KDDARVTALALRAGQGDRAALTEFIRRTQKDVWRLLAHLADIDRADDLTQETYLRIISAL 91 Query 66 PRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRH-------ARGF 118 P F+ RSSARTWLL++AR V D +RH +RP++T G E + D+H + + Sbjct 92 PTFAGRSSARTWLLSVARRVWVDSVRHDMARPQST-GTEWETV--ADQHTATNTAASSSW 148 Query 119 EDLVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 D V+V ++ +L D+REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR L+ Sbjct 149 SDWVDVQLLMENLDPDRREALILTQVLGYTYDEAATIVGVRVGTIRSRVARARTDLI 205 >gi|227487288|ref|ZP_03917604.1| RNA polymerase sigma factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227542710|ref|ZP_03972759.1| RNA polymerase sigma factor [Corynebacterium glucuronolyticum ATCC 51866] gi|227092714|gb|EEI28026.1| RNA polymerase sigma factor [Corynebacterium glucuronolyticum ATCC 51867] gi|227181476|gb|EEI62448.1| RNA polymerase sigma factor [Corynebacterium glucuronolyticum ATCC 51866] Length=169 Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 88/170 (52%), Positives = 116/170 (69%), Gaps = 7/170 (4%) Query 8 DEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPR 67 D+ VT LAL+A KG+ AL FIK TQ+DVWR +A+LS ADDLTQET+LR I A+PR Sbjct 4 DDLVTRLALAAGKGDREALTEFIKLTQKDVWRLLAHLSSPAEADDLTQETYLRVISALPR 63 Query 68 FSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFE--DLVEVT 125 F RS+A+TWL+ +AR V D IRH +SRP+ + + +HA E +LV+V Sbjct 64 FQGRSTAKTWLITLARRVWIDQIRHEQSRPKKSSTE-----YEDVQHATPPEWSELVDVR 118 Query 126 TMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 ++ L ++REAL+LTQ+LG SY +AA + G VGTIRSRVARAR L+ Sbjct 119 LLLNSLPPERREALVLTQVLGYSYEEAAKIAGVRVGTIRSRVARARKDLI 168 >gi|300857591|ref|YP_003782574.1| ECF family sigma factor C [Corynebacterium pseudotuberculosis FRC41] gi|300685045|gb|ADK27967.1| ECF-family sigma factor C [Corynebacterium pseudotuberculosis FRC41] gi|302205328|gb|ADL09670.1| RNA polymerase sigma factor [Corynebacterium pseudotuberculosis C231] gi|302329882|gb|ADL20076.1| RNA polymerase sigma factor [Corynebacterium pseudotuberculosis 1002] gi|308275568|gb|ADO25467.1| ECF family sigma factor C [Corynebacterium pseudotuberculosis I19] gi|341823994|gb|AEK91515.1| RNA polymerase sigma factor [Corynebacterium pseudotuberculosis PAT10] Length=187 Score = 161 bits (408), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 91/178 (52%), Positives = 120/178 (68%), Gaps = 5/178 (2%) Query 8 DEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPR 67 D+ VT LAL+A +G+ AL FI+ TQ DVWR +A+L ADDLTQET+LR +GA+PR Sbjct 7 DDRVTQLALAAGRGDKTALTEFIRETQNDVWRLLAHLGGSEIADDLTQETYLRVMGALPR 66 Query 68 FSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARG---FEDLVEV 124 F+ARSSARTWLL++AR V D+IRH +RPR + A E L G + D ++V Sbjct 67 FAARSSARTWLLSLARRVWVDNIRHDMARPRKS-SAEVEDLDPAVLSTNGETTWSDWIDV 125 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR-DALLADAEPD 181 +I L T++REAL+LTQ+LG SY +AA + +GTIRSRVARAR D + A P+ Sbjct 126 RLLIDALPTERREALILTQVLGYSYEEAAKIANVRIGTIRSRVARARADVIAAAGRPN 183 >gi|302867485|ref|YP_003836122.1| sigma-70 family RNA polymerase [Micromonospora aurantiaca ATCC 27029] gi|302570344|gb|ADL46546.1| RNA polymerase sigma factor, sigma-70 family [Micromonospora aurantiaca ATCC 27029] Length=187 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 92/173 (54%), Positives = 115/173 (67%), Gaps = 5/173 (2%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DDE VT A AA+G+ A AF++A Q VWRF+A+L+ ADDL QETFLRA+ ++P Sbjct 5 DDEQVTGWARRAARGDQLAAAAFVRALQAPVWRFLAHLAGPAEADDLAQETFLRALRSLP 64 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEH---LIDGDRHARGFEDLVE 123 F+ RSSARTW+ IAR V DH+R +RPR A P+ G ED V Sbjct 65 GFAGRSSARTWIFTIARRVAVDHVRAATARPRV--AALPDWQAAAEAAGAVTGGGEDGVV 122 Query 124 VTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 + +IA L D+REA + TQ+LGLSYA+AA VCGCPVGTIRSRVARAR+ L+A Sbjct 123 LRGLIATLAPDRREAFVATQVLGLSYAEAAEVCGCPVGTIRSRVARAREDLVA 175 >gi|227505990|ref|ZP_03936039.1| ECF family DNA-directed RNA polymerase sigma subunit SigY [Corynebacterium striatum ATCC 6940] gi|227197424|gb|EEI77472.1| ECF family DNA-directed RNA polymerase sigma subunit SigY [Corynebacterium striatum ATCC 6940] Length=188 Score = 161 bits (407), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 89/176 (51%), Positives = 117/176 (67%), Gaps = 2/176 (1%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DD VT LAL A +G+ AL FIK+TQ DVWR +A+L ADDLTQET+LR IGA+P Sbjct 10 DDARVTDLALRAGRGDRAALTEFIKSTQDDVWRLLAHLGGPEIADDLTQETYLRVIGALP 69 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGD--RHARGFEDLVEV 124 RF+ARSSARTWLL++AR V D+IRH +RPR + + ++ + D ++ Sbjct 70 RFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAAAQAPVIENSGTWSDWIDA 129 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEP 180 +I L D+REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR L+ +P Sbjct 130 RALIDALPADRREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARKDLIEGTDP 185 >gi|334564067|ref|ZP_08517058.1| RNA polymerase sigma factor [Corynebacterium bovis DSM 20582] Length=208 Score = 160 bits (406), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 90/169 (54%), Positives = 119/169 (71%), Gaps = 4/169 (2%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DD AVT LAL AA G+ AL AFI+AT QDVWR +A+L+D ADDLTQET+LR +GA+P Sbjct 23 DDTAVTDLALRAATGDRTALNAFIQATHQDVWRLLAHLADTDRADDLTQETYLRVLGALP 82 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARP---EHLIDGDRHA-RGFEDLV 122 RF+ARS+ARTW+L++AR V D +RH +RPR + EH D + + +LV Sbjct 83 RFAARSTARTWILSLARRVWVDSVRHDMARPRKSTAQWEDAAEHSPSPDTAGDQTWAELV 142 Query 123 EVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR 171 + ++ L ++REAL+LTQ+LG +YA+AA + G VGTIRSRVARAR Sbjct 143 DARALLDLLDPERREALVLTQVLGYTYAEAADIAGVRVGTIRSRVARAR 191 >gi|296118036|ref|ZP_06836618.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium ammoniagenes DSM 20306] gi|295968922|gb|EFG82165.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium ammoniagenes DSM 20306] Length=208 Score = 160 bits (405), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 87/174 (50%), Positives = 116/174 (67%), Gaps = 2/174 (1%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DD VT LAL A +G+ +AL FI+ATQ DVWR + +L ADDLTQET+LR I A+P Sbjct 35 DDARVTELALQAGRGDRKALTEFIRATQDDVWRLLVHLGGPEIADDLTQETYLRVISALP 94 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLID--GDRHARGFEDLVEV 124 RF+ARSSARTWLL++AR V D+IRH +RPR + E D ++ + + ++ Sbjct 95 RFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEEATADSASPENSTAWAEWIDA 154 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLADA 178 +I L D+REAL+LTQ+LG +Y +AA + G VGTIRSRV+RAR L+ A Sbjct 155 RALIDALPEDRREALILTQVLGYTYEEAAKISGVRVGTIRSRVSRARKDLIEGA 208 >gi|315506107|ref|YP_004084994.1| ECF subfamily RNA polymerase sigma-24 subunit [Micromonospora sp. L5] gi|315412726|gb|ADU10843.1| RNA polymerase, sigma-24 subunit, ECF subfamily [Micromonospora sp. L5] Length=187 Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 92/176 (53%), Positives = 116/176 (66%), Gaps = 5/176 (2%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 +A DDE VT A AA+G+ A AF++A Q VWRF+A+L+ ADDL QETFLRA+ Sbjct 2 SADDDEQVTGWARRAARGDQLAAAAFVRALQAPVWRFLAHLAGPAEADDLAQETFLRALR 61 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEH---LIDGDRHARGFED 120 ++P F+ RSSARTW+ IAR V DH+R +RPR A P+ G ED Sbjct 62 SLPGFAGRSSARTWIFTIARRVAVDHVRAATARPRV--AALPDWQAAAEAAGAVTGGGED 119 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 V + +IA L D+R A + TQ+LGLSYA+AA VCGCPVGTIRSRVARAR+ L+A Sbjct 120 GVVLRGLIATLAPDRRAAFVATQVLGLSYAEAAEVCGCPVGTIRSRVARAREDLVA 175 >gi|238059059|ref|ZP_04603768.1| sigma-70 region 4 domain-containing protein [Micromonospora sp. ATCC 39149] gi|237880870|gb|EEP69698.1| sigma-70 region 4 domain-containing protein [Micromonospora sp. ATCC 39149] Length=198 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 91/176 (52%), Positives = 117/176 (67%), Gaps = 5/176 (2%) Query 4 TASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIG 63 T +DDE VT A A G+ A AF++A Q VWRF+A+L+ G ADDLTQETFLRA+ Sbjct 10 TGADDEQVTRWARMAGAGDQPAAAAFVRALQGPVWRFLAHLAGPGEADDLTQETFLRALR 69 Query 64 AIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEH---LIDGDRHARGFED 120 ++P F+ RSSARTW+ +IAR V D +R +RPRT A P+ G +D Sbjct 70 SLPGFAGRSSARTWVFSIARRVAVDQVRTAVTRPRTA--ALPDWQAAAEGAGAAEPGADD 127 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALLA 176 V + +IA L ++REA + TQ+ GLSYA+AA VCGCPVGTIRSRVARAR+ L+A Sbjct 128 GVVLRQLIAGLAPERREAFVATQVAGLSYAEAAQVCGCPVGTIRSRVARAREDLVA 183 >gi|227832023|ref|YP_002833730.1| ECF-family sigma factor C [Corynebacterium aurimucosum ATCC 700975] gi|262184120|ref|ZP_06043541.1| RNA polymerase sigma factor [Corynebacterium aurimucosum ATCC 700975] gi|227453039|gb|ACP31792.1| ECF-family sigma factor C [Corynebacterium aurimucosum ATCC 700975] Length=182 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 89/171 (53%), Positives = 114/171 (67%), Gaps = 2/171 (1%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 DD VT LAL A +G+ AL FIK+TQ DVWR +A+L ADDLTQET+LR IGA+P Sbjct 8 DDARVTDLALKAGRGDRAALTEFIKSTQDDVWRLLAHLGGPDIADDLTQETYLRVIGALP 67 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRT--TRGARPEHLIDGDRHARGFEDLVEV 124 RF+ARSSARTWLL++AR V D+IRH +RPR T L + + + ++ Sbjct 68 RFAARSSARTWLLSLARRVWVDNIRHDMARPRKSATEYEDAAALTTTPESSGTWSEWIDA 127 Query 125 TTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 +I L D+REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR L+ Sbjct 128 RALIDALPEDRREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARKDLI 178 >gi|161486000|ref|NP_736833.2| RNA polymerase sigma factor [Corynebacterium efficiens YS-314] gi|259508083|ref|ZP_05750983.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium efficiens YS-314] gi|259164306|gb|EEW48860.1| RNA polymerase sigma-70 factor, ECF subfamily [Corynebacterium efficiens YS-314] Length=186 Score = 158 bits (400), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/182 (48%), Positives = 123/182 (68%), Gaps = 1/182 (0%) Query 1 MTATASDDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLR 60 M + +D VT LAL+A +G+ AL FI+ TQ DVWR +A+L ADDLTQET+LR Sbjct 1 MKSPERNDAHVTELALAAGRGDRDALTEFIRETQDDVWRLLAHLGGREIADDLTQETYLR 60 Query 61 AIGAIPRFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFED 120 + A+PRF+ARSSARTWLL++AR V D+IRH +RPR + + + ++ + + Sbjct 61 VMSALPRFAARSSARTWLLSLARRVWVDNIRHDMARPRKSHVEYEDTGVTDATNSTIWSE 120 Query 121 LVEVTTMIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR-DALLADAE 179 ++V T+I L ++REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR D + A + Sbjct 121 WIDVRTLIDALPAERREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARADLINATSA 180 Query 180 PD 181 P+ Sbjct 181 PE 182 >gi|317507428|ref|ZP_07965161.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus ATCC BAA-974] gi|316254275|gb|EFV13612.1| sigma-70 family RNA polymerase sigma factor [Segniliparus rugosus ATCC BAA-974] Length=193 Score = 158 bits (399), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 85/161 (53%), Positives = 111/161 (69%), Gaps = 6/161 (3%) Query 20 KGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIPRFSARSSARTWLL 79 +G+ +AL AF+ TQ+DVWRF+A+L+D ADDL QET+LRA+ +I RF RS+ + WLL Sbjct 19 RGDRKALAAFVAETQRDVWRFLAHLTDTTQADDLAQETYLRAMTSIVRFEGRSNGKVWLL 78 Query 80 AIARHVVADHIRHVRSRPRTTRGARPEHLIDGDR-----HARGFEDLVEVTTMIADLTTD 134 +IAR V D IR +RPR GA P R H+ E L V ++ DL + Sbjct 79 SIARRVAVDQIRSAVARPRLAPGADPGLAPSVRRREVAEHSAQVE-LSLVKILLDDLAPE 137 Query 135 QREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARARDALL 175 +REAL+LTQ+LGLSYA+AAAVC CPVGT+RSRVARAR+ L+ Sbjct 138 RREALVLTQMLGLSYAEAAAVCDCPVGTVRSRVARAREDLI 178 >gi|23492058|dbj|BAC17033.1| putative RNA polymerase sigma factor [Corynebacterium efficiens YS-314] Length=202 Score = 157 bits (396), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 86/176 (49%), Positives = 121/176 (69%), Gaps = 1/176 (0%) Query 7 DDEAVTALALSAAKGNGRALEAFIKATQQDVWRFVAYLSDVGSADDLTQETFLRAIGAIP 66 +D VT LAL+A +G+ AL FI+ TQ DVWR +A+L ADDLTQET+LR + A+P Sbjct 23 NDAHVTELALAAGRGDRDALTEFIRETQDDVWRLLAHLGGREIADDLTQETYLRVMSALP 82 Query 67 RFSARSSARTWLLAIARHVVADHIRHVRSRPRTTRGARPEHLIDGDRHARGFEDLVEVTT 126 RF+ARSSARTWLL++AR V D+IRH +RPR + + + ++ + + ++V T Sbjct 83 RFAARSSARTWLLSLARRVWVDNIRHDMARPRKSHVEYEDTGVTDATNSTIWSEWIDVRT 142 Query 127 MIADLTTDQREALLLTQLLGLSYADAAAVCGCPVGTIRSRVARAR-DALLADAEPD 181 +I L ++REAL+LTQ+LG +Y +AA + G VGTIRSRVARAR D + A + P+ Sbjct 143 LIDALPAERREALILTQVLGYTYEEAAKIAGVRVGTIRSRVARARADLINATSAPE 198 Lambda K H 0.321 0.132 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 174138591420 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40