BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2076c
Length=83
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841565|ref|NP_336602.1| hypothetical protein MT2136 [Mycoba... 162 1e-38
gi|15609213|ref|NP_216592.1| hypothetical protein Rv2076c [Mycob... 160 7e-38
gi|183984079|ref|YP_001852370.1| hypothetical protein MMAR_5576 ... 67.0 1e-09
gi|118619177|ref|YP_907509.1| hypothetical protein MUL_3974 [Myc... 63.9 8e-09
gi|309362254|emb|CAP28389.2| CBR-SRSX-13 protein [Caenorhabditis... 34.7 4.8
gi|51556650|ref|YP_068284.1| rh195 [Macacine herpesvirus 3] >gi|... 34.3 5.8
>gi|15841565|ref|NP_336602.1| hypothetical protein MT2136 [Mycobacterium tuberculosis CDC1551]
gi|254551103|ref|ZP_05141550.1| hypothetical protein Mtube_11676 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|297731640|ref|ZP_06960758.1| hypothetical protein MtubKR_11151 [Mycobacterium tuberculosis
KZN R506]
gi|13881812|gb|AAK46416.1| hypothetical protein MT2136 [Mycobacterium tuberculosis CDC1551]
Length=99
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/83 (100%), Positives = 83/83 (100%), Gaps = 0/83 (0%)
Query 1 VVVCLIGGVAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLL 60
VVVCLIGGVAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLL
Sbjct 17 VVVCLIGGVAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLL 76
Query 61 VLIPAVVYGKMRRSRRISSDQDR 83
VLIPAVVYGKMRRSRRISSDQDR
Sbjct 77 VLIPAVVYGKMRRSRRISSDQDR 99
>gi|15609213|ref|NP_216592.1| hypothetical protein Rv2076c [Mycobacterium tuberculosis H37Rv]
gi|31793258|ref|NP_855751.1| hypothetical protein Mb2101c [Mycobacterium bovis AF2122/97]
gi|121637960|ref|YP_978184.1| hypothetical protein BCG_2094c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
62 more sequence titles
Length=83
Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/83 (99%), Positives = 83/83 (100%), Gaps = 0/83 (0%)
Query 1 VVVCLIGGVAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLL 60
+VVCLIGGVAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLL
Sbjct 1 MVVCLIGGVAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLL 60
Query 61 VLIPAVVYGKMRRSRRISSDQDR 83
VLIPAVVYGKMRRSRRISSDQDR
Sbjct 61 VLIPAVVYGKMRRSRRISSDQDR 83
>gi|183984079|ref|YP_001852370.1| hypothetical protein MMAR_5576 [Mycobacterium marinum M]
gi|183177405|gb|ACC42515.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=91
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/61 (61%), Positives = 43/61 (71%), Gaps = 5/61 (8%)
Query 19 GRLRGGC-----YFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLLVLIPAVVYGKMRR 73
RLR G Y A MGVAW+LLA+SAIANA++GSLW + SL LLVLIP VY K+R
Sbjct 28 ARLRPGVLHARRYVAIMGVAWLLLAVSAIANAIRGSLWGTVGSLVLLVLIPTAVYSKLRN 87
Query 74 S 74
S
Sbjct 88 S 88
>gi|118619177|ref|YP_907509.1| hypothetical protein MUL_3974 [Mycobacterium ulcerans Agy99]
gi|118571287|gb|ABL06038.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=91
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/66 (57%), Positives = 45/66 (69%), Gaps = 1/66 (1%)
Query 9 VAGSLWPRPAGRLRGGCYFAFMGVAWVLLAISAIANAVKGSLWWDIWSLGLLVLIPAVVY 68
+AG RP G L Y A MG AW+LLA+SAIANA++GSLW + SL LLVLIP VY
Sbjct 24 IAGFARLRP-GVLHARRYVAIMGFAWLLLAVSAIANAIRGSLWGTVGSLVLLVLIPTAVY 82
Query 69 GKMRRS 74
K+R +
Sbjct 83 SKLRNN 88
>gi|309362254|emb|CAP28389.2| CBR-SRSX-13 protein [Caenorhabditis briggsae AF16]
Length=291
Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats.
Identities = 23/78 (30%), Positives = 38/78 (49%), Gaps = 11/78 (14%)
Query 2 VVCLIGGVAGSLWPRPAGRLRGGC-----YFAFMGVAWVLLAISAIAN---AVKGSLWW- 52
+VCL G V G P+ R R C ++ F A VL+ + +A+ +VK ++++
Sbjct 55 IVCLFGTVLGGFMMDPSTRTRQNCFVHISFYIFCQAAQVLIMLIIMADILVSVKFAIFYH 114
Query 53 --DIWSLGLLVLIPAVVY 68
W L V IP ++Y
Sbjct 115 NLSTWKYTLSVSIPVLIY 132
>gi|51556650|ref|YP_068284.1| rh195 [Macacine herpesvirus 3]
gi|31378067|gb|AAP50717.1| rh195 [Rhesus cytomegalovirus strain 68-1]
gi|73695839|gb|AAZ80713.1| rh195 [Macacine herpesvirus 3]
Length=247
Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/69 (34%), Positives = 34/69 (50%), Gaps = 5/69 (7%)
Query 14 WPRPAGRLRGGCYFAFMGVAWVLLAI-SAIANAVKGSLWWDIWSLGLLVLIPAVVYGKMR 72
W RP GC+ VA+ L+A+ S + + + + I+SLG ++LIP Y R
Sbjct 137 WIRPLA----GCFITSFAVAFSLIALFSKNLSIILRATGYAIFSLGFVLLIPTQFYLVHR 192
Query 73 RSRRISSDQ 81
R RI S
Sbjct 193 RPERIKSSS 201
Lambda K H
0.329 0.143 0.488
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 127525940264
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40