BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2077A Length=99 Score E Sequences producing significant alignments: (Bits) Value gi|15841567|ref|NP_336604.1| hypothetical protein MT2138 [Mycoba... 182 1e-44 gi|118466069|ref|YP_882823.1| hypothetical protein MAV_3646 [Myc... 100 5e-20 gi|183980151|ref|YP_001848442.1| hypothetical protein MMAR_0117 ... 79.7 1e-13 gi|41408569|ref|NP_961405.1| hypothetical protein MAP2471 [Mycob... 74.7 4e-12 gi|254774329|ref|ZP_05215845.1| hypothetical protein MaviaA2_066... 74.7 5e-12 gi|118465025|ref|YP_880721.1| hypothetical protein MAV_1480 [Myc... 73.9 7e-12 gi|183984078|ref|YP_001852369.1| hypothetical protein MMAR_4107 ... 72.0 3e-11 gi|183984031|ref|YP_001852322.1| hypothetical protein MMAR_4060 ... 67.4 7e-10 gi|342858516|ref|ZP_08715171.1| hypothetical protein MCOL_06561 ... 66.6 1e-09 gi|240172764|ref|ZP_04751423.1| hypothetical protein MkanA1_2584... 61.2 5e-08 gi|183980509|ref|YP_001848800.1| hypothetical protein MMAR_0480 ... 60.5 7e-08 gi|118463827|ref|YP_879970.1| hypothetical protein MAV_0691 [Myc... 55.1 4e-06 gi|118467080|ref|YP_881457.1| hypothetical protein MAV_2253 [Myc... 48.9 3e-04 gi|240173426|ref|ZP_04752084.1| hypothetical protein MkanA1_2919... 40.4 0.082 gi|41407316|ref|NP_960152.1| hypothetical protein MAP1218c [Myco... 37.0 1.1 gi|340626960|ref|YP_004745412.1| hypothetical protein MCAN_19671... 35.0 3.5 gi|15609088|ref|NP_216467.1| hypothetical protein Rv1951c [Mycob... 34.7 4.3 >gi|15841567|ref|NP_336604.1| hypothetical protein MT2138 [Mycobacterium tuberculosis CDC1551] gi|31793260|ref|NP_855753.1| hypothetical protein Mb2103c [Mycobacterium bovis AF2122/97] gi|57116940|ref|YP_177658.1| hypothetical protein Rv2077A [Mycobacterium tuberculosis H37Rv] 68 more sequence titles Length=99 Score = 182 bits (463), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 98/99 (99%), Positives = 99/99 (100%), Gaps = 0/99 (0%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 +GSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE Sbjct 1 MGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV Sbjct 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 >gi|118466069|ref|YP_882823.1| hypothetical protein MAV_3646 [Mycobacterium avium 104] gi|118167356|gb|ABK68253.1| conserved hypothetical protein [Mycobacterium avium 104] Length=100 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 67/99 (68%), Positives = 73/99 (74%), Gaps = 1/99 (1%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 VGS+ELQVVL QL AA Q QGL AQ A A PP GQPFQATT AVSG+NAAI A A Sbjct 3 VGSDELQVVLDQLRAAAGQWQGLSAQLAEVA-PPSPGQPFQATTAAVSGVNAAIAVARAA 61 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 FA+R QA A V +AAA YA+QEAT A EMAAVT+V VV Sbjct 62 FASRIQAEAARVTSAAADYANQEATGAGEMAAVTRVAVV 100 >gi|183980151|ref|YP_001848442.1| hypothetical protein MMAR_0117 [Mycobacterium marinum M] gi|183173477|gb|ACC38587.1| conserved hypothetical protein [Mycobacterium marinum M] Length=156 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 70/99 (71%), Positives = 73/99 (74%), Gaps = 0/99 (0%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 VGS+EL V LGQL V ASQ Q L AQ AA ATPP GQPFQAT AVSGI AAI Sbjct 58 VGSDELHVKLGQLGVTASQWQDLRAQLAAGATPPAPGQPFQATAAAVSGIGAAIGGTGVA 117 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 ATRTQATA V AAAA+YA+QEATAA EMAAVTQV VV Sbjct 118 LATRTQATAAAVTAAAASYANQEATAAGEMAAVTQVRVV 156 >gi|41408569|ref|NP_961405.1| hypothetical protein MAP2471 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396927|gb|AAS04788.1| hypothetical protein MAP_2471 [Mycobacterium avium subsp. paratuberculosis K-10] gi|336460918|gb|EGO39801.1| hypothetical protein MAPs_35840 [Mycobacterium avium subsp. paratuberculosis S397] Length=97 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/99 (48%), Positives = 59/99 (60%), Gaps = 2/99 (2%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 +G + LQVV +L A+Q Q L +QF + PP G F+ATT AV+ +NAAI AA Sbjct 1 MGQDSLQVVPAELVATAAQWQALSSQFIGA--PPSPGPSFEATTAAVNALNAAIGATAAS 58 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 F RTQ T GV A+ Y QEAT+A+ M VT V VV Sbjct 59 FVARTQETVGGVTTASGGYLSQEATSAAAMNDVTNVRVV 97 >gi|254774329|ref|ZP_05215845.1| hypothetical protein MaviaA2_06630 [Mycobacterium avium subsp. avium ATCC 25291] Length=97 Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 47/99 (48%), Positives = 59/99 (60%), Gaps = 2/99 (2%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 +G + LQVV +L A+Q Q L +QF + PP G F+ATT AV+ +NAAI AA Sbjct 1 MGQDSLQVVPAELVATAAQWQALSSQFIGA--PPSPGLSFEATTAAVNALNAAIGATAAS 58 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 F RTQ T GV A+ Y QEAT+A+ M VT V VV Sbjct 59 FVARTQETVGGVTTASGGYLSQEATSAAAMNDVTNVRVV 97 >gi|118465025|ref|YP_880721.1| hypothetical protein MAV_1480 [Mycobacterium avium 104] gi|118465919|ref|YP_880693.1| hypothetical protein MAV_1451 [Mycobacterium avium 104] gi|118166312|gb|ABK67209.1| conserved hypothetical protein [Mycobacterium avium 104] gi|118167206|gb|ABK68103.1| conserved hypothetical protein [Mycobacterium avium 104] Length=97 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/99 (47%), Positives = 58/99 (59%), Gaps = 2/99 (2%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 +G + LQVV +L A+Q Q L +QF + PP G F+ATT AV+ +NAAI A Sbjct 1 MGQDSLQVVPAELVATAAQWQALSSQFIGA--PPSPGPSFEATTAAVNALNAAIAATTAS 58 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 F RTQ T GV A+ Y QEAT+A+ M VT V VV Sbjct 59 FVARTQETVGGVTTASGGYLSQEATSAAAMNDVTNVRVV 97 >gi|183984078|ref|YP_001852369.1| hypothetical protein MMAR_4107 [Mycobacterium marinum M] gi|183177404|gb|ACC42514.1| conserved hypothetical protein [Mycobacterium marinum M] Length=98 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/94 (56%), Positives = 63/94 (68%), Gaps = 2/94 (2%) Query 6 LQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAEFATRT 65 LQVV +L A+Q L +Q TPP SGQPFQATT A++ +NAAI AAA F RT Sbjct 7 LQVVPAELAATAAQWSALSSQLVG--TPPTSGQPFQATTAAMNAVNAAIDVAAAAFTART 64 Query 66 QATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 Q TA+GV AA+ Y QEA +A+EM A+T VTVV Sbjct 65 QTTASGVTAASGGYTAQEAASAAEMGAITGVTVV 98 >gi|183984031|ref|YP_001852322.1| hypothetical protein MMAR_4060 [Mycobacterium marinum M] gi|183177357|gb|ACC42467.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=99 Score = 67.4 bits (163), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 59/99 (60%), Positives = 68/99 (69%), Gaps = 0/99 (0%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 +G++ QL V ASQ +GLGAQ A PP G PFQATT AVSGI++AI A Sbjct 1 MGTDRTTGRTDQLGVTASQRRGLGAQLTRGAAPPAPGHPFQATTAAVSGIDSAIGATATA 60 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 ATRTQATA VAAAAA YA+QEA+AA EMAAV Q+ VV Sbjct 61 LATRTQATAAAVAAAAARYANQEASAADEMAAVAQLKVV 99 >gi|342858516|ref|ZP_08715171.1| hypothetical protein MCOL_06561 [Mycobacterium colombiense CECT 3035] gi|342134220|gb|EGT87400.1| hypothetical protein MCOL_06561 [Mycobacterium colombiense CECT 3035] Length=97 Score = 66.6 bits (161), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 53/99 (54%), Positives = 63/99 (64%), Gaps = 2/99 (2%) Query 1 VGSNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAE 60 +G + LQVV +L A Q L +Q A PP GQPFQATT AV+ +NAAI AA Sbjct 1 MGQDSLQVVPAELAAIAGQWGALTSQLAG--VPPVPGQPFQATTAAVNAVNAAIGVTAAS 58 Query 61 FATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 FA RTQ T GV AA Y QEAT+A+++AAVT VTVV Sbjct 59 FAARTQETVGGVTQAAGGYTAQEATSAADIAAVTGVTVV 97 >gi|240172764|ref|ZP_04751423.1| hypothetical protein MkanA1_25842 [Mycobacterium kansasii ATCC 12478] Length=202 Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 42/96 (44%), Positives = 53/96 (56%), Gaps = 1/96 (1%) Query 3 SNELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAEFA 62 + EL+V + QL +ASQ + L +F+ A+P G+P Q TT AV G + A+ AA Sbjct 108 TGELRVDVYQLRASASQWRELSTRFSVLASP-TPGRPCQPTTAAVGGAHTAVGLAAEVLT 166 Query 63 TRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTV 98 RTQAT V A A Y E TAA EMAAV V Sbjct 167 IRTQATTGAVKAGAEGYGSNEVTAAGEMAAVRPRMV 202 >gi|183980509|ref|YP_001848800.1| hypothetical protein MMAR_0480 [Mycobacterium marinum M] gi|183173835|gb|ACC38945.1| conserved hypothetical protein [Mycobacterium marinum M] Length=97 Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 41/89 (47%), Positives = 50/89 (57%), Gaps = 1/89 (1%) Query 5 ELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAEFATR 64 +L+V + QLE A + A AA TPP GQPFQ TT AVS + A+ AAA T Sbjct 5 QLRVEVPQLEATAGEWSQRSATLAA-LTPPSPGQPFQPTTAAVSSAHTAVGLAAAALTTH 63 Query 65 TQATATGVAAAAAAYAHQEATAASEMAAV 93 TQ T V + A YA E T+ +EMAAV Sbjct 64 TQETIVAVESGATRYATNETTSPAEMAAV 92 >gi|118463827|ref|YP_879970.1| hypothetical protein MAV_0691 [Mycobacterium avium 104] gi|118165114|gb|ABK66011.1| conserved hypothetical protein [Mycobacterium avium 104] Length=70 Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/67 (62%), Positives = 46/67 (69%), Gaps = 0/67 (0%) Query 33 PPESGQPFQATTVAVSGINAAICCAAAEFATRTQATATGVAAAAAAYAHQEATAASEMAA 92 PP GQ FQATT AV+ +NAAI AAA F RTQAT GV AA Y QEATAA +M+ Sbjct 4 PPAPGQSFQATTAAVNAVNAAIGVAAASFTARTQATVGGVTQAAGGYTAQEATAAGQMSN 63 Query 93 VTQVTVV 99 +T VTVV Sbjct 64 ITGVTVV 70 >gi|118467080|ref|YP_881457.1| hypothetical protein MAV_2253 [Mycobacterium avium 104] gi|118168367|gb|ABK69264.1| hypothetical protein MAV_2253 [Mycobacterium avium 104] Length=53 Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 29/50 (58%), Positives = 35/50 (70%), Gaps = 0/50 (0%) Query 50 INAAICCAAAEFATRTQATATGVAAAAAAYAHQEATAASEMAAVTQVTVV 99 +NAAI AA F RTQ T GV AAA Y QEAT+A+++AA+T VTVV Sbjct 4 VNAAIGVTAAAFTARTQETVGGVTAAAGGYTAQEATSAADIAAITGVTVV 53 >gi|240173426|ref|ZP_04752084.1| hypothetical protein MkanA1_29196 [Mycobacterium kansasii ATCC 12478] Length=97 Score = 40.4 bits (93), Expect = 0.082, Method: Compositional matrix adjust. Identities = 35/79 (45%), Positives = 44/79 (56%), Gaps = 6/79 (7%) Query 11 GQLEVAASQSQGLGAQFAASAT------PPESGQPFQATTVAVSGINAAICCAAAEFATR 64 GQL + Q +G+ +Q+ + PP GQPFQ TT AV G +AA+ AAA R Sbjct 4 GQLRIDVPQLEGVASQWGQRSLELAVLAPPSLGQPFQRTTAAVRGAHAAVEFAAAALLAR 63 Query 65 TQATATGVAAAAAAYAHQE 83 TQATA+ V A A YA E Sbjct 64 TQATASTVQAGATGYASNE 82 >gi|41407316|ref|NP_960152.1| hypothetical protein MAP1218c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395668|gb|AAS03535.1| hypothetical protein MAP_1218c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336458046|gb|EGO37033.1| hypothetical protein MAPs_17440 [Mycobacterium avium subsp. paratuberculosis S397] Length=97 Score = 37.0 bits (84), Expect = 1.1, Method: Compositional matrix adjust. Identities = 32/90 (36%), Positives = 50/90 (56%), Gaps = 6/90 (6%) Query 10 LGQLEVAASQSQGLGAQFAASA------TPPESGQPFQATTVAVSGINAAICCAAAEFAT 63 + +LEV +++ + L ++ +A TPP SG +Q + VAV +AA+ AA Sbjct 1 MDRLEVTSAELRMLSGKWHTNAARLRVATPPPSGMSYQPSAVAVDAAHAAVEVAANSLIG 60 Query 64 RTQATATGVAAAAAAYAHQEATAASEMAAV 93 R TAT VAAA +Y EA +A +M+A+ Sbjct 61 RMIETATKVAAADFSYTANEADSADKMSAI 90 >gi|340626960|ref|YP_004745412.1| hypothetical protein MCAN_19671 [Mycobacterium canettii CIPT 140010059] gi|340005150|emb|CCC44299.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=98 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 28/62 (46%), Positives = 35/62 (57%), Gaps = 1/62 (1%) Query 5 ELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAEFATR 64 EL+V + Q+ ASQ G + + A PP GQPFQ TT AV G +AA+ A A F R Sbjct 5 ELRVNIQQVAATASQWSGRSTELSVLA-PPPLGQPFQPTTAAVGGAHAAVGLAVAAFTAR 63 Query 65 TQ 66 T Sbjct 64 TH 65 >gi|15609088|ref|NP_216467.1| hypothetical protein Rv1951c [Mycobacterium tuberculosis H37Rv] gi|31793143|ref|NP_855636.1| hypothetical protein Mb1986c [Mycobacterium bovis AF2122/97] gi|121637856|ref|YP_978079.1| hypothetical protein BCG_1990c [Mycobacterium bovis BCG str. Pasteur 1173P2] 74 more sequence titles Length=98 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 28/62 (46%), Positives = 35/62 (57%), Gaps = 1/62 (1%) Query 5 ELQVVLGQLEVAASQSQGLGAQFAASATPPESGQPFQATTVAVSGINAAICCAAAEFATR 64 EL+V + Q+ ASQ G + + A PP GQPFQ TT AV G +AA+ A A F R Sbjct 5 ELRVNIQQVAATASQWSGRSTELSVLA-PPPLGQPFQPTTAAVGGAHAAVGLAVAAFTAR 63 Query 65 TQ 66 T Sbjct 64 TH 65 Lambda K H 0.310 0.116 0.303 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129711308684 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40