BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2078

Length=104
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609215|ref|NP_216594.1|  hypothetical protein Rv2078 [Mycoba...   211    4e-53
gi|15841570|ref|NP_336607.1|  hypothetical protein MT2139 [Mycoba...   207    3e-52
gi|289443584|ref|ZP_06433328.1|  conserved hypothetical protein [...   165    2e-39
gi|240168385|ref|ZP_04747044.1|  hypothetical protein MkanA1_0368...   125    2e-27
gi|296167164|ref|ZP_06849571.1|  conserved hypothetical protein [...   121    3e-26
gi|240173421|ref|ZP_04752079.1|  hypothetical protein MkanA1_2917...   119    2e-25
gi|183985439|ref|YP_001853730.1|  hypothetical protein MMAR_5469 ...   112    2e-23
gi|254823071|ref|ZP_05228072.1|  hypothetical protein MintA_24295...   112    3e-23
gi|41410427|ref|NP_963263.1|  hypothetical protein MAP4329c [Myco...   109    1e-22
gi|254777638|ref|ZP_05219154.1|  hypothetical protein MaviaA2_236...   108    3e-22
gi|342862330|ref|ZP_08718971.1|  hypothetical protein MCOL_25688 ...   107    6e-22
gi|118620061|ref|YP_908393.1|  hypothetical protein MUL_5058 [Myc...   107    8e-22
gi|333992295|ref|YP_004524909.1|  hypothetical protein JDM601_365...  88.2    4e-16
gi|333989561|ref|YP_004522175.1|  hypothetical protein JDM601_092...  70.1    1e-10
gi|118467290|ref|YP_884402.1|  hypothetical protein MAV_5291 [Myc...  65.9    2e-09
gi|86741641|ref|YP_482041.1|  bacteriophage resistance gene PglY ...  33.9    8.3  


>gi|15609215|ref|NP_216594.1| hypothetical protein Rv2078 [Mycobacterium tuberculosis H37Rv]
 gi|148661893|ref|YP_001283416.1| hypothetical protein MRA_2092 [Mycobacterium tuberculosis H37Ra]
 gi|167967779|ref|ZP_02550056.1| hypothetical protein MtubH3_06997 [Mycobacterium tuberculosis 
H37Ra]
 9 more sequence titles
 Length=104

 Score =  211 bits (536),  Expect = 4e-53, Method: Compositional matrix adjust.
 Identities = 103/104 (99%), Positives = 104/104 (100%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM
Sbjct  1    MFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT
Sbjct  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104


>gi|15841570|ref|NP_336607.1| hypothetical protein MT2139 [Mycobacterium tuberculosis CDC1551]
 gi|31793261|ref|NP_855754.1| hypothetical protein Mb2104 [Mycobacterium bovis AF2122/97]
 gi|121637963|ref|YP_978187.1| hypothetical protein BCG_2097 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 51 more sequence titles
 Length=104

 Score =  207 bits (528),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 102/104 (99%), Positives = 103/104 (99%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVDV LLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM
Sbjct  1    MFVDVGLLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT
Sbjct  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104


>gi|289443584|ref|ZP_06433328.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289416503|gb|EFD13743.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=94

 Score =  165 bits (417),  Expect = 2e-39, Method: Compositional matrix adjust.
 Identities = 81/83 (98%), Positives = 82/83 (99%), Gaps = 0/83 (0%)

Query  1   VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
           +FVDV LLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM
Sbjct  1   MFVDVGLLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60

Query  61  RNLHAHRQALITVGEKARHAATG  83
           RNLHAHRQALITVGEKARHAATG
Sbjct  61  RNLHAHRQALITVGEKARHAATG  83


>gi|240168385|ref|ZP_04747044.1| hypothetical protein MkanA1_03682 [Mycobacterium kansasii ATCC 
12478]
Length=104

 Score =  125 bits (314),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 66/104 (64%), Positives = 75/104 (73%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD   L  GAN+SH AG+HA  GA  LSRGPLLSGMFG F  A+ FH AV +AHAQQ+
Sbjct  1    MFVDTGSLRLGANDSHRAGDHAQDGAGCLSRGPLLSGMFGEFAAAEAFHGAVTSAHAQQV  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            + L AH+ AL  VG  AR AA GFT MDD NAAEL+AV CS AT
Sbjct  61   KTLQAHQDALTAVGGNARRAAVGFTGMDDRNAAELRAVRCSSAT  104


>gi|296167164|ref|ZP_06849571.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295897486|gb|EFG77085.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=106

 Score =  121 bits (304),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 63/104 (61%), Positives = 70/104 (68%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD  LLHSG NESH AG HA  GADQL+RGPL SGMFG F  A  FH+AV  AH Q +
Sbjct  1    MFVDTALLHSGGNESHRAGGHAQEGADQLARGPLASGMFGDFAAADAFHEAVTTAHTQHV  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            +NL  H+Q L  VG KA +AA GFT MD  NA ELKAV     T
Sbjct  61   QNLQGHKQTLTDVGAKAHYAAKGFTSMDQQNAGELKAVRPRSGT  104


>gi|240173421|ref|ZP_04752079.1| hypothetical protein MkanA1_29171 [Mycobacterium kansasii ATCC 
12478]
Length=123

 Score =  119 bits (297),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 59/104 (57%), Positives = 75/104 (73%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD +LLHSG N+SH AG HA  GADQL++GPL SG FG F   +TFH  V A+  + +
Sbjct  20   MFVDTDLLHSGGNQSHQAGGHAREGADQLAQGPLPSGTFGEFAAGETFHGVVSASLTKHV  79

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            + L AH +AL  +G+KA HAA GFTDMD+ NAA+L+AV CS  T
Sbjct  80   QTLQAHHEALSAIGDKAHHAAAGFTDMDERNAAKLRAVRCSSVT  123


>gi|183985439|ref|YP_001853730.1| hypothetical protein MMAR_5469 [Mycobacterium marinum M]
 gi|183178765|gb|ACC43875.1| conserved hypothetical protein [Mycobacterium marinum M]
Length=104

 Score =  112 bits (279),  Expect = 2e-23, Method: Compositional matrix adjust.
 Identities = 60/104 (58%), Positives = 71/104 (69%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD  LLH G NESH AG HA  GAD+L+ GPL+SGMFG F  A  FH+ V +AHAQ +
Sbjct  1    MFVDTGLLHLGGNESHRAGGHAQEGADRLALGPLMSGMFGDFAAADAFHNGVHSAHAQHV  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            RNL AH++AL  VG  A  AA GFT MD+ NA  L+AV  S  T
Sbjct  61   RNLQAHQEALTAVGSNAHLAAKGFTAMDEHNAEALQAVRWSAGT  104


>gi|254823071|ref|ZP_05228072.1| hypothetical protein MintA_24295 [Mycobacterium intracellulare 
ATCC 13950]
Length=109

 Score =  112 bits (279),  Expect = 3e-23, Method: Compositional matrix adjust.
 Identities = 58/102 (57%), Positives = 69/102 (68%), Gaps = 0/102 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FV+ E LHSG N+SH AG HA  GAD L+ G L SGMFG F  A +FH+AV  AH Q +
Sbjct  1    MFVNTEQLHSGGNQSHRAGGHAQEGADHLAGGTLESGMFGDFEAADSFHNAVTTAHGQHV  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSC  102
            +NL  H + L +VG KA HAA GFT+MD  NA ELKAV  S 
Sbjct  61   KNLQGHSETLTSVGTKAHHAANGFTNMDQHNAEELKAVRPSS  102


>gi|41410427|ref|NP_963263.1| hypothetical protein MAP4329c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41399261|gb|AAS06879.1| hypothetical protein MAP_4329c [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336459794|gb|EGO38708.1| Protein of unknown function (DUF2563) [Mycobacterium avium subsp. 
paratuberculosis S397]
Length=109

 Score =  109 bits (272),  Expect = 1e-22, Method: Compositional matrix adjust.
 Identities = 56/98 (58%), Positives = 68/98 (70%), Gaps = 0/98 (0%)

Query  1   VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
           +FVD +LLHSG N+SH AG HA  GADQL+ G + SGMFG F  A  FH AV  AH Q +
Sbjct  1   MFVDTDLLHSGGNQSHRAGGHARDGADQLAGGTVASGMFGDFAAADAFHSAVVVAHEQHV  60

Query  61  RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAV  98
           +NL AH + L  VG KA HAA GFT+MD  NA E++A+
Sbjct  61  QNLQAHSETLTGVGTKAHHAANGFTNMDQQNATEMRAL  98


>gi|254777638|ref|ZP_05219154.1| hypothetical protein MaviaA2_23616 [Mycobacterium avium subsp. 
avium ATCC 25291]
Length=111

 Score =  108 bits (270),  Expect = 3e-22, Method: Compositional matrix adjust.
 Identities = 55/98 (57%), Positives = 67/98 (69%), Gaps = 0/98 (0%)

Query  1   VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
           +FVD +LLHSG N+SH AG HA  GADQL+ G + SGMFG F  A  FH AV  AH Q +
Sbjct  3   MFVDTDLLHSGGNQSHRAGGHARDGADQLAGGTVASGMFGDFAAADPFHSAVAVAHEQHV  62

Query  61  RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAV  98
            NL AH + L  VG KA HAA  FT+MD+ NA E++A+
Sbjct  63  NNLQAHSETLTGVGTKAHHAANSFTNMDEQNATEMRAL  100


>gi|342862330|ref|ZP_08718971.1| hypothetical protein MCOL_25688 [Mycobacterium colombiense CECT 
3035]
 gi|342130187|gb|EGT83515.1| hypothetical protein MCOL_25688 [Mycobacterium colombiense CECT 
3035]
Length=109

 Score =  107 bits (267),  Expect = 6e-22, Method: Compositional matrix adjust.
 Identities = 55/102 (54%), Positives = 67/102 (66%), Gaps = 0/102 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD +LLHSG N+SH AG HA  GADQL+ G + SGMFG F  A  FH AV AAH Q +
Sbjct  1    MFVDTDLLHSGGNQSHRAGGHAQDGADQLAGGTVASGMFGDFAAADAFHSAVAAAHGQHV  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSC  102
            + L  H + L  VG KA  AA GFT+MD  NA E++A+  S 
Sbjct  61   KTLQGHSETLTGVGTKAHTAANGFTNMDKNNATEMQALRPSS  102


>gi|118620061|ref|YP_908393.1| hypothetical protein MUL_5058 [Mycobacterium ulcerans Agy99]
 gi|118572171|gb|ABL06922.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99]
Length=104

 Score =  107 bits (266),  Expect = 8e-22, Method: Compositional matrix adjust.
 Identities = 58/104 (56%), Positives = 69/104 (67%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD  LLH G NESH AG HA  GAD+L+ GPL+SGMFG F  A  F ++V +AHAQ +
Sbjct  1    MFVDTGLLHLGGNESHRAGGHAQEGADRLALGPLMSGMFGDFAAADAFRNSVHSAHAQHV  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
            RNL AH++AL  VG  A  AA GFT MD  NA  L+AV     T
Sbjct  61   RNLQAHQEALTAVGSNAHLAAKGFTAMDGHNAQALQAVRWGAVT  104


>gi|333992295|ref|YP_004524909.1| hypothetical protein JDM601_3655 [Mycobacterium sp. JDM601]
 gi|333488263|gb|AEF37655.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=104

 Score = 88.2 bits (217),  Expect = 4e-16, Method: Compositional matrix adjust.
 Identities = 46/104 (45%), Positives = 67/104 (65%), Gaps = 0/104 (0%)

Query  1    VFVDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQM  60
            +FVD  +L +G + SH A  HAH GA  L +  + +G+FG+F  A  +H+A+  AH+  +
Sbjct  1    MFVDPAMLTAGESHSHSAANHAHTGAASLHQPGVTAGIFGSFGAADVYHNAICTAHSDHI  60

Query  61   RNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVVCSCAT  104
              L+ HR+ L  VG+KA +AA  FT MD  NAAEL+AV C+ +T
Sbjct  61   TILNGHRRTLTDVGDKAHYAARAFTGMDQHNAAELRAVQCNSST  104


>gi|333989561|ref|YP_004522175.1| hypothetical protein JDM601_0921 [Mycobacterium sp. JDM601]
 gi|333485529|gb|AEF34921.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=105

 Score = 70.1 bits (170),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 41/97 (43%), Positives = 55/97 (57%), Gaps = 0/97 (0%)

Query  3   VDVELLHSGANESHYAGEHAHGGADQLSRGPLLSGMFGTFPVAQTFHDAVGAAHAQQMRN  62
           VD + L +GAN S  AG HA  GA +L    + +G+FG F  A +FH A+G+A       
Sbjct  3   VDPQALRTGANVSDDAGGHARNGAQRLGSAGVAAGIFGDFDDAHSFHAALGSAKDGHRDA  62

Query  63  LHAHRQALITVGEKARHAATGFTDMDDGNAAELKAVV  99
           L  H Q L  + E  R AAT FT MD+ NA +L+ V+
Sbjct  63  LQGHHQNLTGIAENVRTAATAFTRMDNDNAEQLRDVI  99


>gi|118467290|ref|YP_884402.1| hypothetical protein MAV_5291 [Mycobacterium avium 104]
 gi|118168577|gb|ABK69474.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=72

 Score = 65.9 bits (159),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 32/61 (53%), Positives = 39/61 (64%), Gaps = 0/61 (0%)

Query  38  MFGTFPVAQTFHDAVGAAHAQQMRNLHAHRQALITVGEKARHAATGFTDMDDGNAAELKA  97
           MFG F  A  FH AV  AH Q + NL AH + L  VG KA HAA  FT+MD+ NA E++A
Sbjct  1   MFGDFAAADAFHSAVAVAHEQHVNNLQAHSETLTGVGTKAHHAANSFTNMDEQNATEMRA  60

Query  98  V  98
           +
Sbjct  61  L  61


>gi|86741641|ref|YP_482041.1| bacteriophage resistance gene PglY [Frankia sp. CcI3]
 gi|86568503|gb|ABD12312.1| bacteriophage (phiC31) resistance gene PglY [Frankia sp. CcI3]
Length=1227

 Score = 33.9 bits (76),  Expect = 8.3, Method: Compositional matrix adjust.
 Identities = 22/51 (44%), Positives = 29/51 (57%), Gaps = 2/51 (3%)

Query  45   AQTFHDAVGAAHAQQMRN--LHAHRQALITVGEKARHAATGFTDMDDGNAA  93
            A  F  A+ AA A Q R   +    +AL+   E AR AATG+ ++DDG AA
Sbjct  201  ADRFEQALTAAPAAQERRDLVGTLEKALVGFAELARGAATGYVNIDDGLAA  251



Lambda     K      H
   0.320    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127350764394


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40