BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2085

Length=101
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609222|ref|NP_216601.1|  hypothetical protein Rv2085 [Mycoba...   201    3e-50
gi|289443591|ref|ZP_06433335.1|  conserved hypothetical protein [...   164    5e-39
gi|315445640|ref|YP_004078519.1|  transposase [Mycobacterium sp. ...  75.5    2e-12
gi|315445695|ref|YP_004078574.1|  transposase [Mycobacterium sp. ...  74.3    5e-12
gi|119855044|ref|YP_935649.1|  transposase IS3/IS911 family prote...  70.5    8e-11
gi|336458093|gb|EGO37078.1|  Transposase [Mycobacterium avium sub...  68.9    2e-10
gi|41408253|ref|NP_961089.1|  hypothetical protein MAP2155 [Mycob...  67.8    5e-10
gi|108802543|ref|YP_642739.1|  transposase IS3/IS911 [Mycobacteri...  66.2    1e-09
gi|296394770|ref|YP_003659654.1|  transposase IS3/IS911 family pr...  62.4    2e-08
gi|315657079|ref|ZP_07909963.1|  transposase IS6110 [Mobiluncus c...  60.5    7e-08
gi|315655444|ref|ZP_07908344.1|  transposase IS6110 [Mobiluncus c...  59.7    1e-07
gi|304389775|ref|ZP_07371734.1|  IS3 family element [Mobiluncus c...  58.9    2e-07
gi|40445358|ref|NP_954818.1|  transposase [Gordonia westfalica] >...  58.9    2e-07
gi|315657910|ref|ZP_07910787.1|  transposase IS3/IS911 family pro...  58.9    3e-07
gi|302523890|ref|ZP_07276232.1|  predicted protein [Streptomyces ...  58.5    3e-07
gi|302524846|ref|ZP_07277188.1|  predicted protein [Streptomyces ...  58.2    4e-07
gi|269976340|ref|ZP_06183334.1|  transposase, ISMyma03_aa1 [Mobil...  57.4    6e-07
gi|307701691|ref|ZP_07638707.1|  transposase [Mobiluncus mulieris...  55.8    2e-06
gi|307699733|ref|ZP_07636789.1|  conserved domain protein [Mobilu...  55.5    2e-06
gi|269976384|ref|ZP_06183375.1|  transposase, ISMyma03_aa1 [Mobil...  55.5    3e-06
gi|315657912|ref|ZP_07910788.1|  transposase [Mobiluncus curtisii...  54.7    5e-06
gi|25029174|ref|NP_739228.1|  putative transposase [Corynebacteri...  53.9    8e-06
gi|259505830|ref|ZP_05748732.1|  transposase [Corynebacterium eff...  53.5    9e-06
gi|315501664|ref|YP_004080551.1|  transposase is3/is911 family pr...  53.5    1e-05
gi|17425270|dbj|BAB78768.1|  transposase (N-terminal portion) [Te...  53.5    1e-05
gi|269976997|ref|ZP_06183971.1|  transposase, ISMyma03_aa1 [Mobil...  53.1    1e-05
gi|309810462|ref|ZP_07704286.1|  transposase [Dermacoccus sp. Ell...  53.1    1e-05
gi|239917895|ref|YP_002957453.1|  Transposase [Micrococcus luteus...  52.0    3e-05
gi|120406906|ref|YP_956735.1|  transposase IS3/IS911 family prote...  52.0    3e-05
gi|108797903|ref|YP_638100.1|  transposase IS3/IS911 [Mycobacteri...  52.0    3e-05
gi|118462873|ref|YP_881869.1|  transposase [Mycobacterium avium 1...  51.6    3e-05
gi|108799560|ref|YP_639757.1|  transposase IS3/IS911 [Mycobacteri...  51.6    3e-05
gi|307699779|ref|ZP_07636832.1|  transposase [Mobiluncus mulieris...  51.6    4e-05
gi|336115814|ref|YP_004570580.1|  putative transposase [Microluna...  51.6    4e-05
gi|297625306|ref|YP_003687069.1|  transposase IS3/IS911 [Propioni...  51.6    4e-05
gi|118463260|ref|YP_881465.1|  ISAfe7, transposase OrfA [Mycobact...  51.6    4e-05
gi|5524308|gb|AAD44201.1|AF143772_3  IS1601-C [Mycobacterium aviu...  51.2    5e-05
gi|296166208|ref|ZP_06848649.1|  IS3 family element [Mycobacteriu...  51.2    5e-05
gi|296166194|ref|ZP_06848635.1|  IS3 family element [Mycobacteriu...  51.2    5e-05
gi|118469824|ref|YP_886092.1|  IS3 family protein element, transp...  50.1    1e-04
gi|315441897|ref|YP_004074776.1|  transposase [Mycobacterium sp. ...  50.1    1e-04
gi|152966414|ref|YP_001362198.1|  transposase IS3/IS911 family pr...  50.1    1e-04
gi|260905477|ref|ZP_05913799.1|  putative transposase orfA for in...  49.7    1e-04
gi|315445684|ref|YP_004078563.1|  transposase [Mycobacterium sp. ...  49.3    2e-04
gi|119714334|ref|YP_921299.1|  transposase IS3/IS911 family prote...  48.9    2e-04
gi|118465469|ref|YP_884154.1|  ISAfe7, transposase OrfA [Mycobact...  48.9    2e-04
gi|126434809|ref|YP_001070500.1|  transposase IS3/IS911 family pr...  48.9    3e-04
gi|309811935|ref|ZP_07705704.1|  IS1137, transposase OrfA [Dermac...  48.9    3e-04
gi|334338205|ref|YP_004543357.1|  transposase IS3/IS911 family pr...  48.5    3e-04
gi|297626839|ref|YP_003688602.1|  transposase IS3/IS911 [Propioni...  48.5    3e-04


>gi|15609222|ref|NP_216601.1| hypothetical protein Rv2085 [Mycobacterium tuberculosis H37Rv]
 gi|15841578|ref|NP_336615.1| IS1556 transposase [Mycobacterium tuberculosis CDC1551]
 gi|31793268|ref|NP_855761.1| hypothetical protein Mb2112 [Mycobacterium bovis AF2122/97]
 70 more sequence titles
 Length=101

 Score =  201 bits (511),  Expect = 3e-50, Method: Compositional matrix adjust.
 Identities = 100/101 (99%), Positives = 101/101 (100%), Gaps = 0/101 (0%)

Query  1    VSDMCDVVSFVGAAERVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSG  60
            +SDMCDVVSFVGAAERVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSG
Sbjct  1    MSDMCDVVSFVGAAERVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSG  60

Query  61   VVAGVSASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR  101
            VVAGVSASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR
Sbjct  61   VVAGVSASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR  101


>gi|289443591|ref|ZP_06433335.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289416510|gb|EFD13750.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=98

 Score =  164 bits (415),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 86/95 (91%), Positives = 87/95 (92%), Gaps = 1/95 (1%)

Query  8    VSFVGAAERVLRAR-FRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVS  66
            VSFVG    V  +R F PSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVS
Sbjct  4    VSFVGRRRAVSESRDFGPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVS  63

Query  67   ASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR  101
            ASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR
Sbjct  64   ASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR  98


>gi|315445640|ref|YP_004078519.1| transposase [Mycobacterium sp. Spyr1]
 gi|315445646|ref|YP_004078525.1| transposase [Mycobacterium sp. Spyr1]
 gi|315446745|ref|YP_004079624.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263943|gb|ADU00685.1| Transposase [Mycobacterium sp. Spyr1]
 gi|315263949|gb|ADU00691.1| Transposase [Mycobacterium sp. Spyr1]
 gi|315265048|gb|ADU01790.1| Transposase [Mycobacterium sp. Spyr1]
Length=103

 Score = 75.5 bits (184),  Expect = 2e-12, Method: Compositional matrix adjust.
 Identities = 38/66 (58%), Positives = 45/66 (69%), Gaps = 5/66 (7%)

Query  41   LGISAETLRRWAGQAEVDSGVVAGVSAS-----RSGSVKTSELEQTIEILKVATSFFARK  95
            LG++ ETLRRW  Q+EVD+G   G+S       R    K  ELE+TIEILK ATSFFAR+
Sbjct  38   LGVAVETLRRWVAQSEVDTGQRDGLSTDAVRELRELKRKNRELEETIEILKAATSFFARE  97

Query  96   CDPRHR  101
             DPRHR
Sbjct  98   SDPRHR  103


>gi|315445695|ref|YP_004078574.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263998|gb|ADU00740.1| Transposase [Mycobacterium sp. Spyr1]
Length=103

 Score = 74.3 bits (181),  Expect = 5e-12, Method: Compositional matrix adjust.
 Identities = 38/65 (59%), Positives = 43/65 (67%), Gaps = 5/65 (7%)

Query  41   LGISAETLRRWAGQAEVDSGVVAGVSAS-----RSGSVKTSELEQTIEILKVATSFFARK  95
            LG+S E+LRRW  QAEVD+GV  GV        R    K  ELE+TIEILK ATSFF R+
Sbjct  38   LGVSYESLRRWVNQAEVDTGVRDGVPTDTVRELRELKRKNRELEETIEILKAATSFFVRE  97

Query  96   CDPRH  100
             DPRH
Sbjct  98   SDPRH  102


>gi|119855044|ref|YP_935649.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
 gi|119855372|ref|YP_935975.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
 gi|119697762|gb|ABL94834.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
 gi|119698089|gb|ABL95160.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
Length=104

 Score = 70.5 bits (171),  Expect = 8e-11, Method: Compositional matrix adjust.
 Identities = 35/66 (54%), Positives = 45/66 (69%), Gaps = 5/66 (7%)

Query  41   LGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARK  95
            LG++AETLR W  Q +VD G   GVS+  +  ++      +ELEQTIEILK ATSFF R+
Sbjct  38   LGMNAETLRNWIRQQQVDDGDRDGVSSEAAAEIRALKRRNAELEQTIEILKAATSFFVRE  97

Query  96   CDPRHR  101
             DPR+R
Sbjct  98   SDPRNR  103


>gi|336458093|gb|EGO37078.1| Transposase [Mycobacterium avium subsp. paratuberculosis S397]
Length=103

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 5/66 (7%)

Query  41   LGISAETLRRWAGQAEVDSGVVAGVSA-----SRSGSVKTSELEQTIEILKVATSFFARK  95
            +G+  ETLR+W  QAE+D G   GV+      +R    K +ELEQT+EIL+ AT+FF R+
Sbjct  38   IGVGPETLRKWVRQAEIDGGERDGVTTATNRENRELKRKVAELEQTVEILRAATTFFVRE  97

Query  96   CDPRHR  101
             DPRHR
Sbjct  98   SDPRHR  103


>gi|41408253|ref|NP_961089.1| hypothetical protein MAP2155 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396608|gb|AAS04472.1| IS6110 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=103

 Score = 67.8 bits (164),  Expect = 5e-10, Method: Compositional matrix adjust.
 Identities = 32/66 (49%), Positives = 44/66 (67%), Gaps = 5/66 (7%)

Query  41   LGISAETLRRWAGQAEVDSGVVAGVSA-----SRSGSVKTSELEQTIEILKVATSFFARK  95
            +G+  ETLR+W  QAE+D G   GV+      +R    K +ELEQT+E+L+ AT+FF R+
Sbjct  38   IGVGPETLRKWVRQAEIDGGERDGVTTATNRENRELKRKVAELEQTVEMLRAATTFFVRE  97

Query  96   CDPRHR  101
             DPRHR
Sbjct  98   SDPRHR  103


>gi|108802543|ref|YP_642739.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|108802546|ref|YP_642742.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|108772962|gb|ABG11683.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|108772965|gb|ABG11686.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
Length=65

 Score = 66.2 bits (160),  Expect = 1e-09, Method: Compositional matrix adjust.
 Identities = 33/64 (52%), Positives = 43/64 (68%), Gaps = 5/64 (7%)

Query  43   ISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKCD  97
            ++AETLR W  Q +VD G   GVS+  +  ++      +ELEQTIEILK ATSFF R+ D
Sbjct  1    MNAETLRNWIRQQQVDDGDRDGVSSEAAAEIRALKRRNAELEQTIEILKAATSFFVRESD  60

Query  98   PRHR  101
            PR+R
Sbjct  61   PRNR  64


>gi|296394770|ref|YP_003659654.1| transposase IS3/IS911 family protein [Segniliparus rotundus DSM 
44985]
 gi|296181917|gb|ADG98823.1| transposase IS3/IS911 family protein [Segniliparus rotundus DSM 
44985]
Length=113

 Score = 62.4 bits (150),  Expect = 2e-08, Method: Compositional matrix adjust.
 Identities = 34/70 (49%), Positives = 42/70 (60%), Gaps = 5/70 (7%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
            +R G  LG+  ETLR W  QAEVD+G   GV+ + S  VK       EL +  EIL  A+
Sbjct  41   QRIGKRLGVHHETLRTWVKQAEVDAGRRPGVTTAESDRVKALEREVKELRRANEILLAAS  100

Query  90   SFFARKCDPR  99
            SFFAR+ DPR
Sbjct  101  SFFARELDPR  110


>gi|315657079|ref|ZP_07909963.1| transposase IS6110 [Mobiluncus curtisii subsp. holmesii ATCC 
35242]
 gi|315492182|gb|EFU81789.1| transposase IS6110 [Mobiluncus curtisii subsp. holmesii ATCC 
35242]
Length=106

 Score = 60.5 bits (145),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 29/66 (44%), Positives = 43/66 (66%), Gaps = 5/66 (7%)

Query  37   CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
             G  LG+S E+LRRW  QAE+D G  +GV+   S  ++      +EL +T EILK+A++F
Sbjct  36   IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF  95

Query  92   FARKCD  97
            FA++ D
Sbjct  96   FAKELD  101


>gi|315655444|ref|ZP_07908344.1| transposase IS6110 [Mobiluncus curtisii ATCC 51333]
 gi|315490384|gb|EFU80009.1| transposase IS6110 [Mobiluncus curtisii ATCC 51333]
Length=106

 Score = 59.7 bits (143),  Expect = 1e-07, Method: Compositional matrix adjust.
 Identities = 30/66 (46%), Positives = 43/66 (66%), Gaps = 5/66 (7%)

Query  37   CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
             G  LG+S E+LRRW  QAE+D G   GVS   S  ++      +EL++T EILK+A++F
Sbjct  36   IGLKLGVSRESLRRWVVQAEIDQGERPGVSREESAEIRRLRKENAELKRTNEILKLASAF  95

Query  92   FARKCD  97
            FA++ D
Sbjct  96   FAKELD  101


>gi|304389775|ref|ZP_07371734.1| IS3 family element [Mobiluncus curtisii subsp. curtisii ATCC 
35241]
 gi|304326951|gb|EFL94190.1| IS3 family element [Mobiluncus curtisii subsp. curtisii ATCC 
35241]
Length=125

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 34/82 (42%), Positives = 49/82 (60%), Gaps = 6/82 (7%)

Query  21  RFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----T  75
           R R  P S   + +   G  LG+S E+LRRW  QAE+D G   GVS   S  ++      
Sbjct  20  RLRDDPGSRAAIISD-TGLKLGVSRESLRRWVVQAEIDRGERPGVSREESAEIRRLRKEN  78

Query  76  SELEQTIEILKVATSFFARKCD  97
           +EL++T EILK+A++FFA++ D
Sbjct  79  AELKRTNEILKLASAFFAKELD  100


>gi|40445358|ref|NP_954818.1| transposase [Gordonia westfalica]
 gi|40217388|emb|CAE09139.1| putative transposase [Gordonia westfalica]
Length=103

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 27/67 (41%), Positives = 42/67 (63%), Gaps = 5/67 (7%)

Query  40   SLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFAR  94
             +G+  ET+RRWA QA++D+G  +G +   S  +K       +L + + ILK AT+FFA 
Sbjct  37   QVGVGGETVRRWAVQAQIDAGARSGTTTKESAEIKRLKAENKQLREDVAILKAATTFFAG  96

Query  95   KCDPRHR  101
            + DPR+R
Sbjct  97   ELDPRNR  103


>gi|315657910|ref|ZP_07910787.1| transposase IS3/IS911 family protein [Mobiluncus curtisii subsp. 
holmesii ATCC 35242]
 gi|315491503|gb|EFU81117.1| transposase IS3/IS911 family protein [Mobiluncus curtisii subsp. 
holmesii ATCC 35242]
Length=82

 Score = 58.9 bits (141),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 30/66 (46%), Positives = 43/66 (66%), Gaps = 5/66 (7%)

Query  37  CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
            G  LG+S E+LRRW  QAE+D G   GVS   S  ++      +EL++T EILK+A++F
Sbjct  12  IGLKLGVSRESLRRWVVQAEIDQGERPGVSREESAEIRRLRRENAELKRTNEILKLASAF  71

Query  92  FARKCD  97
           FA++ D
Sbjct  72  FAKELD  77


>gi|302523890|ref|ZP_07276232.1| predicted protein [Streptomyces sp. AA4]
 gi|302525825|ref|ZP_07278167.1| predicted protein [Streptomyces sp. AA4]
 gi|302528740|ref|ZP_07281082.1| predicted protein [Streptomyces sp. AA4]
 gi|302432785|gb|EFL04601.1| predicted protein [Streptomyces sp. AA4]
 gi|302434720|gb|EFL06536.1| predicted protein [Streptomyces sp. AA4]
 gi|302437635|gb|EFL09451.1| predicted protein [Streptomyces sp. AA4]
Length=97

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 31/64 (49%), Positives = 40/64 (63%), Gaps = 5/64 (7%)

Query  41  LGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARK  95
           +G+SAE+LRRW  QAE D G   GV+ + S  V+       EL +  EILK A+ FFAR+
Sbjct  30  VGVSAESLRRWVRQAETDQGARPGVTTAESERVRELERENRELRRANEILKAASIFFARE  89

Query  96  CDPR  99
            DPR
Sbjct  90  LDPR  93


>gi|302524846|ref|ZP_07277188.1| predicted protein [Streptomyces sp. AA4]
 gi|302433741|gb|EFL05557.1| predicted protein [Streptomyces sp. AA4]
Length=97

 Score = 58.2 bits (139),  Expect = 4e-07, Method: Compositional matrix adjust.
 Identities = 31/64 (49%), Positives = 40/64 (63%), Gaps = 5/64 (7%)

Query  41  LGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARK  95
           +G+SAE+LRRW  QAE D G   GV+ + S  V+       EL +  EILK A+ FFAR+
Sbjct  30  VGVSAESLRRWVRQAETDQGARPGVTTAESERVRELERENRELRRANEILKAASIFFARE  89

Query  96  CDPR  99
            DPR
Sbjct  90  LDPR  93


>gi|269976340|ref|ZP_06183334.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
 gi|269935461|gb|EEZ92001.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
Length=81

 Score = 57.4 bits (137),  Expect = 6e-07, Method: Compositional matrix adjust.
 Identities = 28/66 (43%), Positives = 43/66 (66%), Gaps = 5/66 (7%)

Query  37  CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
            G  LG+S E+LRRW  +AE+D G  +GV+   S  ++      +EL +T EILK+A++F
Sbjct  12  IGLKLGVSRESLRRWVNRAEIDQGERSGVTREESAEIRRLGRENAELRRTNEILKLASAF  71

Query  92  FARKCD  97
           FA++ D
Sbjct  72  FAKELD  77


>gi|307701691|ref|ZP_07638707.1| transposase [Mobiluncus mulieris FB024-16]
 gi|307613194|gb|EFN92447.1| transposase [Mobiluncus mulieris FB024-16]
Length=135

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 5/62 (8%)

Query  37  CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
            G  LG+S E+LRRW  QAE+D G  +GV+   S  ++      +EL +T EILK+A++F
Sbjct  36  IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF  95

Query  92  FA  93
           FA
Sbjct  96  FA  97


>gi|307699733|ref|ZP_07636789.1| conserved domain protein [Mobiluncus mulieris FB024-16]
 gi|307615095|gb|EFN94308.1| conserved domain protein [Mobiluncus mulieris FB024-16]
Length=173

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 5/62 (8%)

Query  37  CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
            G  LG+S E+LRRW  QAE+D G  +GV+   S  ++      +EL +T EILK+A++F
Sbjct  36  IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLGKENAELRRTNEILKLASAF  95

Query  92  FA  93
           FA
Sbjct  96  FA  97


>gi|269976384|ref|ZP_06183375.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
 gi|269935417|gb|EEZ91960.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
Length=105

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 32/82 (40%), Positives = 46/82 (57%), Gaps = 5/82 (6%)

Query  21   RFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----T  75
            RFR        V     G  LG+S E+L RW  QAE+D G  +GV+   S  ++      
Sbjct  20   RFRDDSGVSRWVVISDIGLKLGVSRESLCRWVNQAEIDQGERSGVTREESAEIRRLGKEN  79

Query  76   SELEQTIEILKVATSFFARKCD  97
            +EL +T EILK+A++FFA++ D
Sbjct  80   AELRRTNEILKLASAFFAKEFD  101


>gi|315657912|ref|ZP_07910788.1| transposase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
 gi|315491501|gb|EFU81116.1| transposase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length=169

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 5/62 (8%)

Query  37  CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
            G  LG+S E+LRRW  QAE+D G  +GV+   S  ++      +EL +T EILK+A++F
Sbjct  20  TGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF  79

Query  92  FA  93
           FA
Sbjct  80  FA  81


>gi|25029174|ref|NP_739228.1| putative transposase [Corynebacterium efficiens YS-314]
 gi|23494462|dbj|BAC19428.1| putative transposase [Corynebacterium efficiens YS-314]
Length=116

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 28/65 (44%), Positives = 37/65 (57%), Gaps = 5/65 (7%)

Query  42   GISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKC  96
            G+S E++RRW  QAEVD G   G++   S  VK        L    EIL+ A+ FFA + 
Sbjct  52   GVSPESVRRWLAQAEVDDGTRLGITTEESAEVKRLKAEVKRLRDDNEILRRASIFFAGEL  111

Query  97   DPRHR  101
            DPR+R
Sbjct  112  DPRNR  116


>gi|259505830|ref|ZP_05748732.1| transposase [Corynebacterium efficiens YS-314]
 gi|259166618|gb|EEW51172.1| transposase [Corynebacterium efficiens YS-314]
Length=115

 Score = 53.5 bits (127),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 28/65 (44%), Positives = 37/65 (57%), Gaps = 5/65 (7%)

Query  42   GISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKC  96
            G+S E++RRW  QAEVD G   G++   S  VK        L    EIL+ A+ FFA + 
Sbjct  51   GVSPESVRRWLAQAEVDDGTRLGITTEESAEVKRLKAEVKRLRDDNEILRRASIFFAGEL  110

Query  97   DPRHR  101
            DPR+R
Sbjct  111  DPRNR  115


>gi|315501664|ref|YP_004080551.1| transposase is3/is911 family protein [Micromonospora sp. L5]
 gi|315408283|gb|ADU06400.1| transposase IS3/IS911 family protein [Micromonospora sp. L5]
Length=102

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 31/59 (53%), Positives = 39/59 (67%), Gaps = 6/59 (10%)

Query  41  LGI-SAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFA  93
           LGI +AETLR+W  QAEVD+G  AGVS   S  +K      +EL +  EILK A++FFA
Sbjct  40  LGIGTAETLRKWVRQAEVDAGQRAGVSTDESAELKRLRRENAELRRANEILKAASAFFA  98


>gi|17425270|dbj|BAB78768.1| transposase (N-terminal portion) [Terrabacter sp.]
Length=114

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 41/72 (57%), Gaps = 5/72 (6%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
            +R    LG   E++R W  QA++D G VAG+S S +  +K       EL++  EILK A 
Sbjct  42   QRVAQQLGYGTESVRSWVRQADIDEGHVAGISTSDAAKMKALEQENRELKRANEILKRAA  101

Query  90   SFFARKCDPRHR  101
            SFF  + D +H+
Sbjct  102  SFFGAELDRQHK  113


>gi|269976997|ref|ZP_06183971.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
 gi|269934828|gb|EEZ91388.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
Length=97

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 26/60 (44%), Positives = 38/60 (64%), Gaps = 5/60 (8%)

Query  37  CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF  91
            G  LG+S E+LRRW  QAE+D G  +GV+   S  ++      +EL +T EILK+A++F
Sbjct  36  IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF  95


>gi|309810462|ref|ZP_07704286.1| transposase [Dermacoccus sp. Ellin185]
 gi|308435575|gb|EFP59383.1| transposase [Dermacoccus sp. Ellin185]
Length=105

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 33/86 (39%), Positives = 46/86 (54%), Gaps = 8/86 (9%)

Query  17   VLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSV---  73
             L AR  P+  +G     RR G  LGI+ ETLR W  QAE+D G   G++ S +  V   
Sbjct  19   TLEARQDPATRTGA---FRRVGEQLGINPETLRNWVRQAEIDHGHRPGITTSEAARVAEL  75

Query  74   --KTSELEQTIEILKVATSFFARKCD  97
              +  EL +   IL+ A++FFA + D
Sbjct  76   EKENRELRRANAILRSASAFFAAELD  101


>gi|239917895|ref|YP_002957453.1| Transposase [Micrococcus luteus NCTC 2665]
 gi|281413604|ref|ZP_06245346.1| Transposase [Micrococcus luteus NCTC 2665]
 gi|239839102|gb|ACS30899.1| Transposase [Micrococcus luteus NCTC 2665]
Length=114

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 28/74 (38%), Positives = 43/74 (59%), Gaps = 9/74 (12%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKV  87
            +R    LG   E++RRW  QA++D GV +GVS++ +  ++  ELEQ +       E+LK 
Sbjct  42   QRVATQLGYGVESVRRWVKQADIDDGVTSGVSSAEAQRIR--ELEQEVRELRRANEVLKR  99

Query  88   ATSFFARKCDPRHR  101
            A SFF  + D  +R
Sbjct  100  AASFFGAELDRHYR  113


>gi|120406906|ref|YP_956735.1| transposase IS3/IS911 family protein [Mycobacterium vanbaalenii 
PYR-1]
 gi|119959724|gb|ABM16729.1| transposase IS3/IS911 family protein [Mycobacterium vanbaalenii 
PYR-1]
Length=114

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 28/72 (39%), Positives = 40/72 (56%), Gaps = 5/72 (6%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
            +R    LG   E++R W  QA++D GV  GV+ + S  +K       ELE+  EILK A 
Sbjct  42   QRVATQLGYGVESVRTWVRQADIDEGVAPGVTTAESTRLKALEQENRELERANEILKRAA  101

Query  90   SFFARKCDPRHR  101
            SFF  + D +H+
Sbjct  102  SFFGAELDRQHK  113


>gi|108797903|ref|YP_638100.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|119866998|ref|YP_936950.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
 gi|108768322|gb|ABG07044.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|119693087|gb|ABL90160.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
Length=127

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 9/73 (12%)

Query  36   RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA  88
            R    LG   E++R W  QA++D G   GV+++ S  VK  ELEQ I       EILK A
Sbjct  56   RVAHQLGYGVESVRSWVRQADIDDGHAPGVTSTESAKVK--ELEQEIRELKRANEILKRA  113

Query  89   TSFFARKCDPRHR  101
             SFF  + D +H+
Sbjct  114  ASFFGAELDRQHK  126


>gi|118462873|ref|YP_881869.1| transposase [Mycobacterium avium 104]
 gi|118463252|ref|YP_880716.1| transposase [Mycobacterium avium 104]
 gi|118464738|ref|YP_880913.1| transposase [Mycobacterium avium 104]
 13 more sequence titles
 Length=91

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 36/91 (40%), Positives = 46/91 (51%), Gaps = 10/91 (10%)

Query  16   RVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-  74
            R LRA      E G  VH  R    LG   E++R W  QA++D G   GVS + S  +K 
Sbjct  5    RTLRAEL--GTEHGT-VH--RVARQLGYGIESVRAWVRQADIDDGYAPGVSTAESKRIKD  59

Query  75   ----TSELEQTIEILKVATSFFARKCDPRHR  101
                  EL++  EILK A SFF  + D +HR
Sbjct  60   LEQENRELKRANEILKRAASFFGAELDRQHR  90


>gi|108799560|ref|YP_639757.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|119867532|ref|YP_937484.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
 gi|119868671|ref|YP_938623.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
 gi|145221200|ref|YP_001131878.1| Fis family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
 gi|108769979|gb|ABG08701.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
 gi|119693621|gb|ABL90694.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
 gi|119694760|gb|ABL91833.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
 gi|145213686|gb|ABP43090.1| transcriptional regulator, Fis family [Mycobacterium gilvum PYR-GCK]
Length=114

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 9/73 (12%)

Query  36   RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA  88
            R    LG   E++R W  QA++D G   GV+++ S  VK  ELEQ I       EILK A
Sbjct  43   RVAHQLGYGVESVRSWVRQADIDDGHAPGVTSTESAKVK--ELEQEIRELKRANEILKRA  100

Query  89   TSFFARKCDPRHR  101
             SFF  + D +H+
Sbjct  101  ASFFGAELDRQHK  113


>gi|307699779|ref|ZP_07636832.1| transposase [Mobiluncus mulieris FB024-16]
 gi|307615041|gb|EFN94257.1| transposase [Mobiluncus mulieris FB024-16]
Length=105

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (65%), Gaps = 5/65 (7%)

Query  38   GWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFF  92
            G  LG+S E+L RW  +AE+D G  +GV+   S  ++      +EL +T +ILK+A++FF
Sbjct  37   GLKLGVSRESLCRWVNRAEIDQGERSGVTREESAEIRRLGRENAELRRTNDILKLASAFF  96

Query  93   ARKCD  97
            A++ D
Sbjct  97   AKELD  101


>gi|336115814|ref|YP_004570580.1| putative transposase [Microlunatus phosphovorus NM-1]
 gi|334683592|dbj|BAK33177.1| putative transposase [Microlunatus phosphovorus NM-1]
Length=103

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/67 (44%), Positives = 37/67 (56%), Gaps = 5/67 (7%)

Query  40   SLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSE-----LEQTIEILKVATSFFAR  94
             LG+  E++RRW  QAEVD G  AG S      +K  +     LE+   ILK AT  FA 
Sbjct  37   QLGVGKESVRRWVIQAEVDDGQRAGASTEELAEIKALKAKVRRLEEDNAILKSATVLFAG  96

Query  95   KCDPRHR  101
            + DPR+R
Sbjct  97   ELDPRNR  103


>gi|297625306|ref|YP_003687069.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp. 
shermanii CIRM-BIA1]
 gi|297625327|ref|YP_003687090.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp. 
shermanii CIRM-BIA1]
 gi|297625766|ref|YP_003687529.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp. 
shermanii CIRM-BIA1]
 13 more sequence titles
 Length=114

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 29/72 (41%), Positives = 39/72 (55%), Gaps = 5/72 (6%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
            +R    LG   E++R W  QA+VD GVV GVS++    VK       EL +  E+LK A 
Sbjct  42   QRVATQLGYGVESVRMWVKQADVDDGVVPGVSSAEEQRVKELEQENRELRRANEVLKRAA  101

Query  90   SFFARKCDPRHR  101
            SFF  + D  +R
Sbjct  102  SFFGAELDRHYR  113


>gi|118463260|ref|YP_881465.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
 gi|118463277|ref|YP_880919.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
 gi|118464273|ref|YP_882454.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
 13 more sequence titles
 Length=114

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 30/74 (41%), Positives = 40/74 (55%), Gaps = 9/74 (12%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKV  87
            +R    LG   E++R W  Q ++D G+  GV+ S S  VK  ELEQ I       EILK 
Sbjct  42   QRVARQLGYGVESVRTWVRQVDIDEGLAPGVTTSESKKVK--ELEQEIRELKRANEILKR  99

Query  88   ATSFFARKCDPRHR  101
            A SFF  + D +H+
Sbjct  100  AASFFGAELDRQHK  113


>gi|5524308|gb|AAD44201.1|AF143772_3 IS1601-C [Mycobacterium avium]
 gi|5524322|gb|AAD44215.1|AF143772_20 transposase [Mycobacterium avium]
 gi|5524331|gb|AAD44224.1|AF143772_30 IS1601-C [Mycobacterium avium]
 gi|5524343|gb|AAD44236.1|AF143772_43 IS1601-C [Mycobacterium avium]
 gi|3170645|gb|AAC71698.1| unknown [Mycobacterium avium]
Length=114

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 36/91 (40%), Positives = 46/91 (51%), Gaps = 10/91 (10%)

Query  16   RVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-  74
            R LRA      E G  VH  R    LG   E++R W  QA++D G   GVS + S  +K 
Sbjct  28   RTLRAEL--GTEHGT-VH--RVARQLGYGIESVRAWVRQADIDDGYAPGVSTAESKRIKD  82

Query  75   ----TSELEQTIEILKVATSFFARKCDPRHR  101
                  EL++  EILK A SFF  + D +HR
Sbjct  83   LEQENRELKRANEILKRAASFFGAELDRQHR  113


>gi|296166208|ref|ZP_06848649.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898456|gb|EFG78021.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=115

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 9/73 (12%)

Query  36   RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA  88
            R    LG   E++R WA QA++D G   GV+ + S  VK  ELEQ +       EILK A
Sbjct  44   RVARQLGYGVESVRSWARQADIDDGYEPGVTTTESKRVK--ELEQEVRELKRANEILKRA  101

Query  89   TSFFARKCDPRHR  101
             SFF  + D +H+
Sbjct  102  ASFFGAELDRQHK  114


>gi|296166194|ref|ZP_06848635.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898442|gb|EFG78007.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=114

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 31/73 (43%), Positives = 39/73 (54%), Gaps = 9/73 (12%)

Query  36   RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA  88
            R    LG   E++R W  QA++D G   GVS + S  VK  ELEQ I       EILK A
Sbjct  43   RVARQLGYGVESVRSWVRQADIDDGYAPGVSTAESRRVK--ELEQEIRELKRANEILKRA  100

Query  89   TSFFARKCDPRHR  101
             SFF  + D +H+
Sbjct  101  ASFFGAELDRQHK  113


>gi|118469824|ref|YP_886092.1| IS3 family protein element, transposase orfA [Mycobacterium smegmatis 
str. MC2 155]
 gi|118171111|gb|ABK72007.1| IS3 family protein element, transposase orfA [Mycobacterium smegmatis 
str. MC2 155]
Length=91

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 30/73 (42%), Positives = 39/73 (54%), Gaps = 9/73 (12%)

Query  36   RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA  88
            R    LG   E++R W  QA++D G   GV+ + S  VK  ELEQ I       EILK A
Sbjct  20   RVARQLGYGVESVRSWVRQADIDDGHAPGVTTAESAKVK--ELEQEIRELKRANEILKRA  77

Query  89   TSFFARKCDPRHR  101
             SFF  + D +H+
Sbjct  78   ASFFGAELDRQHK  90


>gi|315441897|ref|YP_004074776.1| transposase [Mycobacterium sp. Spyr1]
 gi|315260200|gb|ADT96941.1| Transposase [Mycobacterium sp. Spyr1]
Length=114

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/71 (39%), Positives = 38/71 (54%), Gaps = 5/71 (7%)

Query  36   RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATS  90
            R    LG   E++R W  QA++D G   GVS + S  +K       EL++  EILK A S
Sbjct  43   RVARQLGYGVESVRSWVCQADIDDGYAPGVSTAESARIKELEQENRELKRANEILKRAAS  102

Query  91   FFARKCDPRHR  101
            FF  + D +H+
Sbjct  103  FFGAELDRQHK  113


>gi|152966414|ref|YP_001362198.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans 
SRS30216]
 gi|152966793|ref|YP_001362577.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans 
SRS30216]
 gi|151360931|gb|ABS03934.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans 
SRS30216]
 gi|151361310|gb|ABS04313.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans 
SRS30216]
Length=105

 Score = 50.1 bits (118),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 27/68 (40%), Positives = 40/68 (59%), Gaps = 5/68 (7%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSV-----KTSELEQTIEILKVAT  89
            +R G  LGI+AETLR W  QAEV++G   G +   +  +     +  EL +  EIL+ A+
Sbjct  34   KRIGGQLGINAETLRNWVLQAEVNAGDRPGTTTDAAARLAELERENRELRRANEILRRAS  93

Query  90   SFFARKCD  97
            +FFA + D
Sbjct  94   AFFAAELD  101


>gi|260905477|ref|ZP_05913799.1| putative transposase orfA for insertion sequence element [Brevibacterium 
linens BL2]
Length=89

 Score = 49.7 bits (117),  Expect = 1e-04, Method: Compositional matrix adjust.
 Identities = 26/68 (39%), Positives = 39/68 (58%), Gaps = 5/68 (7%)

Query  35  RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
           RR G  LG++ ETLR W  Q +VD+G   G + + +  +K       EL +  +ILK A+
Sbjct  18  RRIGDQLGVNPETLRSWVNQDQVDAGDRPGTTTAEAQRIKDLEKENRELRRANQILKSAS  77

Query  90  SFFARKCD  97
           +FFA + D
Sbjct  78  AFFAAELD  85


>gi|315445684|ref|YP_004078563.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263987|gb|ADU00729.1| Transposase [Mycobacterium sp. Spyr1]
Length=114

 Score = 49.3 bits (116),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 29/74 (40%), Positives = 40/74 (55%), Gaps = 9/74 (12%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKV  87
            +R    LG   E++R W  QA++D G   G+S + S  VK  +LEQ I       EILK 
Sbjct  42   QRVARQLGYGIESVRSWVRQADIDDGHTPGMSTTESARVK--DLEQEIRELKRANEILKR  99

Query  88   ATSFFARKCDPRHR  101
            A SFF  + D +H+
Sbjct  100  AASFFGAELDRQHK  113


>gi|119714334|ref|YP_921299.1| transposase IS3/IS911 family protein [Nocardioides sp. JS614]
 gi|119534995|gb|ABL79612.1| transposase IS3/IS911 family protein [Nocardioides sp. JS614]
Length=109

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 31/74 (42%), Positives = 42/74 (57%), Gaps = 8/74 (10%)

Query  35   RRCGWSLGI-SAETLRRWAGQAEVDSGVVAGVSASRSGSV-----KTSELEQTIEILKVA  88
            R     LGI S+ETLR+W  QAEVD G   G +      +     K +ELE+  +ILK A
Sbjct  36   RTIAAQLGIGSSETLRKWVRQAEVDGGTRPGKTTEELAEIRELKKKVAELERANQILKSA  95

Query  89   TSFFARKCD--PRH  100
            ++FFA + D  PR+
Sbjct  96   SAFFAAELDRQPRY  109


>gi|118465469|ref|YP_884154.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
 gi|118466149|ref|YP_880697.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
 gi|118166756|gb|ABK67653.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
 gi|118167436|gb|ABK68333.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
Length=114

 Score = 48.9 bits (115),  Expect = 2e-04, Method: Compositional matrix adjust.
 Identities = 26/72 (37%), Positives = 40/72 (56%), Gaps = 5/72 (6%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
            +R    LG   E++R W  QA++D G+  GV+ + S  V+       EL++  EILK A 
Sbjct  42   QRVARQLGYGVESVRTWVRQADIDEGLAPGVTTAESKRVQELEQENRELKRANEILKRAA  101

Query  90   SFFARKCDPRHR  101
            SFF  + D +H+
Sbjct  102  SFFGAELDRQHK  113


>gi|126434809|ref|YP_001070500.1| transposase IS3/IS911 family protein [Mycobacterium sp. JLS]
 gi|126234609|gb|ABN98009.1| transposase IS3/IS911 family protein [Mycobacterium sp. JLS]
Length=89

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 29/67 (44%), Positives = 41/67 (62%), Gaps = 7/67 (10%)

Query  41  LGI-SAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFAR  94
           LGI +AET+R+W  QAEVD+G   G +   S  +K      +EL++   ILK A++FFA 
Sbjct  23  LGIGTAETVRKWVRQAEVDAGARPGTTTEESAELKKLRRENAELKRANAILKTASAFFAA  82

Query  95  KCD-PRH  100
           + D P H
Sbjct  83  ELDRPHH  89


>gi|309811935|ref|ZP_07705704.1| IS1137, transposase OrfA [Dermacoccus sp. Ellin185]
 gi|308434105|gb|EFP57968.1| IS1137, transposase OrfA [Dermacoccus sp. Ellin185]
Length=122

 Score = 48.9 bits (115),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 27/67 (41%), Positives = 38/67 (57%), Gaps = 6/67 (8%)

Query  40   SLGISAETLRRWAGQAEVDSGVVAGVSASRSGSV-----KTSELEQTIEILKVATSFFAR  94
             LG++ ETLR W  QAEVD+G   GV+ S    +     +  EL +   IL+ A++FFA 
Sbjct  56   QLGVNPETLRNWVSQAEVDAGTRPGVTTSEHERLLELERENRELRRANAILRSASAFFAA  115

Query  95   KCD-PRH  100
            + D P H
Sbjct  116  ELDRPHH  122


>gi|334338205|ref|YP_004543357.1| transposase IS3/IS911 family protein [Isoptericola variabilis 
225]
 gi|334108573|gb|AEG45463.1| transposase IS3/IS911 family protein [Isoptericola variabilis 
225]
Length=114

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 25/72 (35%), Positives = 39/72 (55%), Gaps = 5/72 (6%)

Query  35   RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT  89
            +R    LG   E++R+W  QA++D G   GV+ + +  ++       EL +  EILK A 
Sbjct  42   QRVASQLGYGVESVRQWVKQADIDDGHAPGVTTTEAKRIRELEQENRELRRANEILKRAA  101

Query  90   SFFARKCDPRHR  101
            SFF  + D +HR
Sbjct  102  SFFGAELDRQHR  113


>gi|297626839|ref|YP_003688602.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp. 
shermanii CIRM-BIA1]
 gi|296922604|emb|CBL57181.1| Transposase IS3/IS911 [Propionibacterium freudenreichii subsp. 
shermanii CIRM-BIA1]
Length=103

 Score = 48.5 bits (114),  Expect = 3e-04, Method: Compositional matrix adjust.
 Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 5/64 (7%)

Query  43   ISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKCD  97
            + AE+LRRW  QAE+D+G   G ++     ++        L + + ILK AT+FF  + D
Sbjct  40   VGAESLRRWVIQAEIDAGDRGGQTSEEHAEIRRLKAENRALREDVAILKAATAFFVGELD  99

Query  98   PRHR  101
            PR+R
Sbjct  100  PRNR  103



Lambda     K      H
   0.319    0.131    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128767090968


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40