BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2085
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609222|ref|NP_216601.1| hypothetical protein Rv2085 [Mycoba... 201 3e-50
gi|289443591|ref|ZP_06433335.1| conserved hypothetical protein [... 164 5e-39
gi|315445640|ref|YP_004078519.1| transposase [Mycobacterium sp. ... 75.5 2e-12
gi|315445695|ref|YP_004078574.1| transposase [Mycobacterium sp. ... 74.3 5e-12
gi|119855044|ref|YP_935649.1| transposase IS3/IS911 family prote... 70.5 8e-11
gi|336458093|gb|EGO37078.1| Transposase [Mycobacterium avium sub... 68.9 2e-10
gi|41408253|ref|NP_961089.1| hypothetical protein MAP2155 [Mycob... 67.8 5e-10
gi|108802543|ref|YP_642739.1| transposase IS3/IS911 [Mycobacteri... 66.2 1e-09
gi|296394770|ref|YP_003659654.1| transposase IS3/IS911 family pr... 62.4 2e-08
gi|315657079|ref|ZP_07909963.1| transposase IS6110 [Mobiluncus c... 60.5 7e-08
gi|315655444|ref|ZP_07908344.1| transposase IS6110 [Mobiluncus c... 59.7 1e-07
gi|304389775|ref|ZP_07371734.1| IS3 family element [Mobiluncus c... 58.9 2e-07
gi|40445358|ref|NP_954818.1| transposase [Gordonia westfalica] >... 58.9 2e-07
gi|315657910|ref|ZP_07910787.1| transposase IS3/IS911 family pro... 58.9 3e-07
gi|302523890|ref|ZP_07276232.1| predicted protein [Streptomyces ... 58.5 3e-07
gi|302524846|ref|ZP_07277188.1| predicted protein [Streptomyces ... 58.2 4e-07
gi|269976340|ref|ZP_06183334.1| transposase, ISMyma03_aa1 [Mobil... 57.4 6e-07
gi|307701691|ref|ZP_07638707.1| transposase [Mobiluncus mulieris... 55.8 2e-06
gi|307699733|ref|ZP_07636789.1| conserved domain protein [Mobilu... 55.5 2e-06
gi|269976384|ref|ZP_06183375.1| transposase, ISMyma03_aa1 [Mobil... 55.5 3e-06
gi|315657912|ref|ZP_07910788.1| transposase [Mobiluncus curtisii... 54.7 5e-06
gi|25029174|ref|NP_739228.1| putative transposase [Corynebacteri... 53.9 8e-06
gi|259505830|ref|ZP_05748732.1| transposase [Corynebacterium eff... 53.5 9e-06
gi|315501664|ref|YP_004080551.1| transposase is3/is911 family pr... 53.5 1e-05
gi|17425270|dbj|BAB78768.1| transposase (N-terminal portion) [Te... 53.5 1e-05
gi|269976997|ref|ZP_06183971.1| transposase, ISMyma03_aa1 [Mobil... 53.1 1e-05
gi|309810462|ref|ZP_07704286.1| transposase [Dermacoccus sp. Ell... 53.1 1e-05
gi|239917895|ref|YP_002957453.1| Transposase [Micrococcus luteus... 52.0 3e-05
gi|120406906|ref|YP_956735.1| transposase IS3/IS911 family prote... 52.0 3e-05
gi|108797903|ref|YP_638100.1| transposase IS3/IS911 [Mycobacteri... 52.0 3e-05
gi|118462873|ref|YP_881869.1| transposase [Mycobacterium avium 1... 51.6 3e-05
gi|108799560|ref|YP_639757.1| transposase IS3/IS911 [Mycobacteri... 51.6 3e-05
gi|307699779|ref|ZP_07636832.1| transposase [Mobiluncus mulieris... 51.6 4e-05
gi|336115814|ref|YP_004570580.1| putative transposase [Microluna... 51.6 4e-05
gi|297625306|ref|YP_003687069.1| transposase IS3/IS911 [Propioni... 51.6 4e-05
gi|118463260|ref|YP_881465.1| ISAfe7, transposase OrfA [Mycobact... 51.6 4e-05
gi|5524308|gb|AAD44201.1|AF143772_3 IS1601-C [Mycobacterium aviu... 51.2 5e-05
gi|296166208|ref|ZP_06848649.1| IS3 family element [Mycobacteriu... 51.2 5e-05
gi|296166194|ref|ZP_06848635.1| IS3 family element [Mycobacteriu... 51.2 5e-05
gi|118469824|ref|YP_886092.1| IS3 family protein element, transp... 50.1 1e-04
gi|315441897|ref|YP_004074776.1| transposase [Mycobacterium sp. ... 50.1 1e-04
gi|152966414|ref|YP_001362198.1| transposase IS3/IS911 family pr... 50.1 1e-04
gi|260905477|ref|ZP_05913799.1| putative transposase orfA for in... 49.7 1e-04
gi|315445684|ref|YP_004078563.1| transposase [Mycobacterium sp. ... 49.3 2e-04
gi|119714334|ref|YP_921299.1| transposase IS3/IS911 family prote... 48.9 2e-04
gi|118465469|ref|YP_884154.1| ISAfe7, transposase OrfA [Mycobact... 48.9 2e-04
gi|126434809|ref|YP_001070500.1| transposase IS3/IS911 family pr... 48.9 3e-04
gi|309811935|ref|ZP_07705704.1| IS1137, transposase OrfA [Dermac... 48.9 3e-04
gi|334338205|ref|YP_004543357.1| transposase IS3/IS911 family pr... 48.5 3e-04
gi|297626839|ref|YP_003688602.1| transposase IS3/IS911 [Propioni... 48.5 3e-04
>gi|15609222|ref|NP_216601.1| hypothetical protein Rv2085 [Mycobacterium tuberculosis H37Rv]
gi|15841578|ref|NP_336615.1| IS1556 transposase [Mycobacterium tuberculosis CDC1551]
gi|31793268|ref|NP_855761.1| hypothetical protein Mb2112 [Mycobacterium bovis AF2122/97]
70 more sequence titles
Length=101
Score = 201 bits (511), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 100/101 (99%), Positives = 101/101 (100%), Gaps = 0/101 (0%)
Query 1 VSDMCDVVSFVGAAERVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSG 60
+SDMCDVVSFVGAAERVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSG
Sbjct 1 MSDMCDVVSFVGAAERVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSG 60
Query 61 VVAGVSASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR 101
VVAGVSASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR
Sbjct 61 VVAGVSASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR 101
>gi|289443591|ref|ZP_06433335.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
gi|289416510|gb|EFD13750.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
Length=98
Score = 164 bits (415), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 86/95 (91%), Positives = 87/95 (92%), Gaps = 1/95 (1%)
Query 8 VSFVGAAERVLRAR-FRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVS 66
VSFVG V +R F PSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVS
Sbjct 4 VSFVGRRRAVSESRDFGPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVS 63
Query 67 ASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR 101
ASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR
Sbjct 64 ASRSGSVKTSELEQTIEILKVATSFFARKCDPRHR 98
>gi|315445640|ref|YP_004078519.1| transposase [Mycobacterium sp. Spyr1]
gi|315445646|ref|YP_004078525.1| transposase [Mycobacterium sp. Spyr1]
gi|315446745|ref|YP_004079624.1| transposase [Mycobacterium sp. Spyr1]
gi|315263943|gb|ADU00685.1| Transposase [Mycobacterium sp. Spyr1]
gi|315263949|gb|ADU00691.1| Transposase [Mycobacterium sp. Spyr1]
gi|315265048|gb|ADU01790.1| Transposase [Mycobacterium sp. Spyr1]
Length=103
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/66 (58%), Positives = 45/66 (69%), Gaps = 5/66 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSAS-----RSGSVKTSELEQTIEILKVATSFFARK 95
LG++ ETLRRW Q+EVD+G G+S R K ELE+TIEILK ATSFFAR+
Sbjct 38 LGVAVETLRRWVAQSEVDTGQRDGLSTDAVRELRELKRKNRELEETIEILKAATSFFARE 97
Query 96 CDPRHR 101
DPRHR
Sbjct 98 SDPRHR 103
>gi|315445695|ref|YP_004078574.1| transposase [Mycobacterium sp. Spyr1]
gi|315263998|gb|ADU00740.1| Transposase [Mycobacterium sp. Spyr1]
Length=103
Score = 74.3 bits (181), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/65 (59%), Positives = 43/65 (67%), Gaps = 5/65 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSAS-----RSGSVKTSELEQTIEILKVATSFFARK 95
LG+S E+LRRW QAEVD+GV GV R K ELE+TIEILK ATSFF R+
Sbjct 38 LGVSYESLRRWVNQAEVDTGVRDGVPTDTVRELRELKRKNRELEETIEILKAATSFFVRE 97
Query 96 CDPRH 100
DPRH
Sbjct 98 SDPRH 102
>gi|119855044|ref|YP_935649.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
gi|119855372|ref|YP_935975.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
gi|119697762|gb|ABL94834.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
gi|119698089|gb|ABL95160.1| transposase IS3/IS911 family protein [Mycobacterium sp. KMS]
Length=104
Score = 70.5 bits (171), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/66 (54%), Positives = 45/66 (69%), Gaps = 5/66 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARK 95
LG++AETLR W Q +VD G GVS+ + ++ +ELEQTIEILK ATSFF R+
Sbjct 38 LGMNAETLRNWIRQQQVDDGDRDGVSSEAAAEIRALKRRNAELEQTIEILKAATSFFVRE 97
Query 96 CDPRHR 101
DPR+R
Sbjct 98 SDPRNR 103
>gi|336458093|gb|EGO37078.1| Transposase [Mycobacterium avium subsp. paratuberculosis S397]
Length=103
Score = 68.9 bits (167), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 44/66 (67%), Gaps = 5/66 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSA-----SRSGSVKTSELEQTIEILKVATSFFARK 95
+G+ ETLR+W QAE+D G GV+ +R K +ELEQT+EIL+ AT+FF R+
Sbjct 38 IGVGPETLRKWVRQAEIDGGERDGVTTATNRENRELKRKVAELEQTVEILRAATTFFVRE 97
Query 96 CDPRHR 101
DPRHR
Sbjct 98 SDPRHR 103
>gi|41408253|ref|NP_961089.1| hypothetical protein MAP2155 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396608|gb|AAS04472.1| IS6110 [Mycobacterium avium subsp. paratuberculosis K-10]
Length=103
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/66 (49%), Positives = 44/66 (67%), Gaps = 5/66 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSA-----SRSGSVKTSELEQTIEILKVATSFFARK 95
+G+ ETLR+W QAE+D G GV+ +R K +ELEQT+E+L+ AT+FF R+
Sbjct 38 IGVGPETLRKWVRQAEIDGGERDGVTTATNRENRELKRKVAELEQTVEMLRAATTFFVRE 97
Query 96 CDPRHR 101
DPRHR
Sbjct 98 SDPRHR 103
>gi|108802543|ref|YP_642739.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|108802546|ref|YP_642742.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|108772962|gb|ABG11683.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|108772965|gb|ABG11686.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
Length=65
Score = 66.2 bits (160), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/64 (52%), Positives = 43/64 (68%), Gaps = 5/64 (7%)
Query 43 ISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKCD 97
++AETLR W Q +VD G GVS+ + ++ +ELEQTIEILK ATSFF R+ D
Sbjct 1 MNAETLRNWIRQQQVDDGDRDGVSSEAAAEIRALKRRNAELEQTIEILKAATSFFVRESD 60
Query 98 PRHR 101
PR+R
Sbjct 61 PRNR 64
>gi|296394770|ref|YP_003659654.1| transposase IS3/IS911 family protein [Segniliparus rotundus DSM
44985]
gi|296181917|gb|ADG98823.1| transposase IS3/IS911 family protein [Segniliparus rotundus DSM
44985]
Length=113
Score = 62.4 bits (150), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/70 (49%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
+R G LG+ ETLR W QAEVD+G GV+ + S VK EL + EIL A+
Sbjct 41 QRIGKRLGVHHETLRTWVKQAEVDAGRRPGVTTAESDRVKALEREVKELRRANEILLAAS 100
Query 90 SFFARKCDPR 99
SFFAR+ DPR
Sbjct 101 SFFARELDPR 110
>gi|315657079|ref|ZP_07909963.1| transposase IS6110 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315492182|gb|EFU81789.1| transposase IS6110 [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length=106
Score = 60.5 bits (145), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 29/66 (44%), Positives = 43/66 (66%), Gaps = 5/66 (7%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G +GV+ S ++ +EL +T EILK+A++F
Sbjct 36 IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF 95
Query 92 FARKCD 97
FA++ D
Sbjct 96 FAKELD 101
>gi|315655444|ref|ZP_07908344.1| transposase IS6110 [Mobiluncus curtisii ATCC 51333]
gi|315490384|gb|EFU80009.1| transposase IS6110 [Mobiluncus curtisii ATCC 51333]
Length=106
Score = 59.7 bits (143), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/66 (46%), Positives = 43/66 (66%), Gaps = 5/66 (7%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G GVS S ++ +EL++T EILK+A++F
Sbjct 36 IGLKLGVSRESLRRWVVQAEIDQGERPGVSREESAEIRRLRKENAELKRTNEILKLASAF 95
Query 92 FARKCD 97
FA++ D
Sbjct 96 FAKELD 101
>gi|304389775|ref|ZP_07371734.1| IS3 family element [Mobiluncus curtisii subsp. curtisii ATCC
35241]
gi|304326951|gb|EFL94190.1| IS3 family element [Mobiluncus curtisii subsp. curtisii ATCC
35241]
Length=125
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/82 (42%), Positives = 49/82 (60%), Gaps = 6/82 (7%)
Query 21 RFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----T 75
R R P S + + G LG+S E+LRRW QAE+D G GVS S ++
Sbjct 20 RLRDDPGSRAAIISD-TGLKLGVSRESLRRWVVQAEIDRGERPGVSREESAEIRRLRKEN 78
Query 76 SELEQTIEILKVATSFFARKCD 97
+EL++T EILK+A++FFA++ D
Sbjct 79 AELKRTNEILKLASAFFAKELD 100
>gi|40445358|ref|NP_954818.1| transposase [Gordonia westfalica]
gi|40217388|emb|CAE09139.1| putative transposase [Gordonia westfalica]
Length=103
Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/67 (41%), Positives = 42/67 (63%), Gaps = 5/67 (7%)
Query 40 SLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFAR 94
+G+ ET+RRWA QA++D+G +G + S +K +L + + ILK AT+FFA
Sbjct 37 QVGVGGETVRRWAVQAQIDAGARSGTTTKESAEIKRLKAENKQLREDVAILKAATTFFAG 96
Query 95 KCDPRHR 101
+ DPR+R
Sbjct 97 ELDPRNR 103
>gi|315657910|ref|ZP_07910787.1| transposase IS3/IS911 family protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
gi|315491503|gb|EFU81117.1| transposase IS3/IS911 family protein [Mobiluncus curtisii subsp.
holmesii ATCC 35242]
Length=82
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/66 (46%), Positives = 43/66 (66%), Gaps = 5/66 (7%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G GVS S ++ +EL++T EILK+A++F
Sbjct 12 IGLKLGVSRESLRRWVVQAEIDQGERPGVSREESAEIRRLRRENAELKRTNEILKLASAF 71
Query 92 FARKCD 97
FA++ D
Sbjct 72 FAKELD 77
>gi|302523890|ref|ZP_07276232.1| predicted protein [Streptomyces sp. AA4]
gi|302525825|ref|ZP_07278167.1| predicted protein [Streptomyces sp. AA4]
gi|302528740|ref|ZP_07281082.1| predicted protein [Streptomyces sp. AA4]
gi|302432785|gb|EFL04601.1| predicted protein [Streptomyces sp. AA4]
gi|302434720|gb|EFL06536.1| predicted protein [Streptomyces sp. AA4]
gi|302437635|gb|EFL09451.1| predicted protein [Streptomyces sp. AA4]
Length=97
Score = 58.5 bits (140), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/64 (49%), Positives = 40/64 (63%), Gaps = 5/64 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARK 95
+G+SAE+LRRW QAE D G GV+ + S V+ EL + EILK A+ FFAR+
Sbjct 30 VGVSAESLRRWVRQAETDQGARPGVTTAESERVRELERENRELRRANEILKAASIFFARE 89
Query 96 CDPR 99
DPR
Sbjct 90 LDPR 93
>gi|302524846|ref|ZP_07277188.1| predicted protein [Streptomyces sp. AA4]
gi|302433741|gb|EFL05557.1| predicted protein [Streptomyces sp. AA4]
Length=97
Score = 58.2 bits (139), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/64 (49%), Positives = 40/64 (63%), Gaps = 5/64 (7%)
Query 41 LGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARK 95
+G+SAE+LRRW QAE D G GV+ + S V+ EL + EILK A+ FFAR+
Sbjct 30 VGVSAESLRRWVRQAETDQGARPGVTTAESERVRELERENRELRRANEILKAASIFFARE 89
Query 96 CDPR 99
DPR
Sbjct 90 LDPR 93
>gi|269976340|ref|ZP_06183334.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
gi|269935461|gb|EEZ92001.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
Length=81
Score = 57.4 bits (137), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/66 (43%), Positives = 43/66 (66%), Gaps = 5/66 (7%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW +AE+D G +GV+ S ++ +EL +T EILK+A++F
Sbjct 12 IGLKLGVSRESLRRWVNRAEIDQGERSGVTREESAEIRRLGRENAELRRTNEILKLASAF 71
Query 92 FARKCD 97
FA++ D
Sbjct 72 FAKELD 77
>gi|307701691|ref|ZP_07638707.1| transposase [Mobiluncus mulieris FB024-16]
gi|307613194|gb|EFN92447.1| transposase [Mobiluncus mulieris FB024-16]
Length=135
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 5/62 (8%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G +GV+ S ++ +EL +T EILK+A++F
Sbjct 36 IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF 95
Query 92 FA 93
FA
Sbjct 96 FA 97
>gi|307699733|ref|ZP_07636789.1| conserved domain protein [Mobiluncus mulieris FB024-16]
gi|307615095|gb|EFN94308.1| conserved domain protein [Mobiluncus mulieris FB024-16]
Length=173
Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 5/62 (8%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G +GV+ S ++ +EL +T EILK+A++F
Sbjct 36 IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLGKENAELRRTNEILKLASAF 95
Query 92 FA 93
FA
Sbjct 96 FA 97
>gi|269976384|ref|ZP_06183375.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
gi|269935417|gb|EEZ91960.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
Length=105
Score = 55.5 bits (132), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/82 (40%), Positives = 46/82 (57%), Gaps = 5/82 (6%)
Query 21 RFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----T 75
RFR V G LG+S E+L RW QAE+D G +GV+ S ++
Sbjct 20 RFRDDSGVSRWVVISDIGLKLGVSRESLCRWVNQAEIDQGERSGVTREESAEIRRLGKEN 79
Query 76 SELEQTIEILKVATSFFARKCD 97
+EL +T EILK+A++FFA++ D
Sbjct 80 AELRRTNEILKLASAFFAKEFD 101
>gi|315657912|ref|ZP_07910788.1| transposase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
gi|315491501|gb|EFU81116.1| transposase [Mobiluncus curtisii subsp. holmesii ATCC 35242]
Length=169
Score = 54.7 bits (130), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/62 (46%), Positives = 40/62 (65%), Gaps = 5/62 (8%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G +GV+ S ++ +EL +T EILK+A++F
Sbjct 20 TGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF 79
Query 92 FA 93
FA
Sbjct 80 FA 81
>gi|25029174|ref|NP_739228.1| putative transposase [Corynebacterium efficiens YS-314]
gi|23494462|dbj|BAC19428.1| putative transposase [Corynebacterium efficiens YS-314]
Length=116
Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/65 (44%), Positives = 37/65 (57%), Gaps = 5/65 (7%)
Query 42 GISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKC 96
G+S E++RRW QAEVD G G++ S VK L EIL+ A+ FFA +
Sbjct 52 GVSPESVRRWLAQAEVDDGTRLGITTEESAEVKRLKAEVKRLRDDNEILRRASIFFAGEL 111
Query 97 DPRHR 101
DPR+R
Sbjct 112 DPRNR 116
>gi|259505830|ref|ZP_05748732.1| transposase [Corynebacterium efficiens YS-314]
gi|259166618|gb|EEW51172.1| transposase [Corynebacterium efficiens YS-314]
Length=115
Score = 53.5 bits (127), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/65 (44%), Positives = 37/65 (57%), Gaps = 5/65 (7%)
Query 42 GISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKC 96
G+S E++RRW QAEVD G G++ S VK L EIL+ A+ FFA +
Sbjct 51 GVSPESVRRWLAQAEVDDGTRLGITTEESAEVKRLKAEVKRLRDDNEILRRASIFFAGEL 110
Query 97 DPRHR 101
DPR+R
Sbjct 111 DPRNR 115
>gi|315501664|ref|YP_004080551.1| transposase is3/is911 family protein [Micromonospora sp. L5]
gi|315408283|gb|ADU06400.1| transposase IS3/IS911 family protein [Micromonospora sp. L5]
Length=102
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/59 (53%), Positives = 39/59 (67%), Gaps = 6/59 (10%)
Query 41 LGI-SAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFA 93
LGI +AETLR+W QAEVD+G AGVS S +K +EL + EILK A++FFA
Sbjct 40 LGIGTAETLRKWVRQAEVDAGQRAGVSTDESAELKRLRRENAELRRANEILKAASAFFA 98
>gi|17425270|dbj|BAB78768.1| transposase (N-terminal portion) [Terrabacter sp.]
Length=114
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/72 (39%), Positives = 41/72 (57%), Gaps = 5/72 (6%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
+R LG E++R W QA++D G VAG+S S + +K EL++ EILK A
Sbjct 42 QRVAQQLGYGTESVRSWVRQADIDEGHVAGISTSDAAKMKALEQENRELKRANEILKRAA 101
Query 90 SFFARKCDPRHR 101
SFF + D +H+
Sbjct 102 SFFGAELDRQHK 113
>gi|269976997|ref|ZP_06183971.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
gi|269934828|gb|EEZ91388.1| transposase, ISMyma03_aa1 [Mobiluncus mulieris 28-1]
Length=97
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/60 (44%), Positives = 38/60 (64%), Gaps = 5/60 (8%)
Query 37 CGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSF 91
G LG+S E+LRRW QAE+D G +GV+ S ++ +EL +T EILK+A++F
Sbjct 36 IGLKLGVSRESLRRWVNQAEIDQGERSGVTREESAEIRRLRKENAELRRTNEILKLASAF 95
>gi|309810462|ref|ZP_07704286.1| transposase [Dermacoccus sp. Ellin185]
gi|308435575|gb|EFP59383.1| transposase [Dermacoccus sp. Ellin185]
Length=105
Score = 53.1 bits (126), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/86 (39%), Positives = 46/86 (54%), Gaps = 8/86 (9%)
Query 17 VLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSV--- 73
L AR P+ +G RR G LGI+ ETLR W QAE+D G G++ S + V
Sbjct 19 TLEARQDPATRTGA---FRRVGEQLGINPETLRNWVRQAEIDHGHRPGITTSEAARVAEL 75
Query 74 --KTSELEQTIEILKVATSFFARKCD 97
+ EL + IL+ A++FFA + D
Sbjct 76 EKENRELRRANAILRSASAFFAAELD 101
>gi|239917895|ref|YP_002957453.1| Transposase [Micrococcus luteus NCTC 2665]
gi|281413604|ref|ZP_06245346.1| Transposase [Micrococcus luteus NCTC 2665]
gi|239839102|gb|ACS30899.1| Transposase [Micrococcus luteus NCTC 2665]
Length=114
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/74 (38%), Positives = 43/74 (59%), Gaps = 9/74 (12%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKV 87
+R LG E++RRW QA++D GV +GVS++ + ++ ELEQ + E+LK
Sbjct 42 QRVATQLGYGVESVRRWVKQADIDDGVTSGVSSAEAQRIR--ELEQEVRELRRANEVLKR 99
Query 88 ATSFFARKCDPRHR 101
A SFF + D +R
Sbjct 100 AASFFGAELDRHYR 113
>gi|120406906|ref|YP_956735.1| transposase IS3/IS911 family protein [Mycobacterium vanbaalenii
PYR-1]
gi|119959724|gb|ABM16729.1| transposase IS3/IS911 family protein [Mycobacterium vanbaalenii
PYR-1]
Length=114
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/72 (39%), Positives = 40/72 (56%), Gaps = 5/72 (6%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
+R LG E++R W QA++D GV GV+ + S +K ELE+ EILK A
Sbjct 42 QRVATQLGYGVESVRTWVRQADIDEGVAPGVTTAESTRLKALEQENRELERANEILKRAA 101
Query 90 SFFARKCDPRHR 101
SFF + D +H+
Sbjct 102 SFFGAELDRQHK 113
>gi|108797903|ref|YP_638100.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|119866998|ref|YP_936950.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
gi|108768322|gb|ABG07044.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|119693087|gb|ABL90160.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
Length=127
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 9/73 (12%)
Query 36 RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA 88
R LG E++R W QA++D G GV+++ S VK ELEQ I EILK A
Sbjct 56 RVAHQLGYGVESVRSWVRQADIDDGHAPGVTSTESAKVK--ELEQEIRELKRANEILKRA 113
Query 89 TSFFARKCDPRHR 101
SFF + D +H+
Sbjct 114 ASFFGAELDRQHK 126
>gi|118462873|ref|YP_881869.1| transposase [Mycobacterium avium 104]
gi|118463252|ref|YP_880716.1| transposase [Mycobacterium avium 104]
gi|118464738|ref|YP_880913.1| transposase [Mycobacterium avium 104]
13 more sequence titles
Length=91
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/91 (40%), Positives = 46/91 (51%), Gaps = 10/91 (10%)
Query 16 RVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK- 74
R LRA E G VH R LG E++R W QA++D G GVS + S +K
Sbjct 5 RTLRAEL--GTEHGT-VH--RVARQLGYGIESVRAWVRQADIDDGYAPGVSTAESKRIKD 59
Query 75 ----TSELEQTIEILKVATSFFARKCDPRHR 101
EL++ EILK A SFF + D +HR
Sbjct 60 LEQENRELKRANEILKRAASFFGAELDRQHR 90
>gi|108799560|ref|YP_639757.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|119867532|ref|YP_937484.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
gi|119868671|ref|YP_938623.1| Fis family transcriptional regulator [Mycobacterium sp. KMS]
gi|145221200|ref|YP_001131878.1| Fis family transcriptional regulator [Mycobacterium gilvum PYR-GCK]
gi|108769979|gb|ABG08701.1| transposase IS3/IS911 [Mycobacterium sp. MCS]
gi|119693621|gb|ABL90694.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
gi|119694760|gb|ABL91833.1| transcriptional regulator, Fis family [Mycobacterium sp. KMS]
gi|145213686|gb|ABP43090.1| transcriptional regulator, Fis family [Mycobacterium gilvum PYR-GCK]
Length=114
Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 9/73 (12%)
Query 36 RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA 88
R LG E++R W QA++D G GV+++ S VK ELEQ I EILK A
Sbjct 43 RVAHQLGYGVESVRSWVRQADIDDGHAPGVTSTESAKVK--ELEQEIRELKRANEILKRA 100
Query 89 TSFFARKCDPRHR 101
SFF + D +H+
Sbjct 101 ASFFGAELDRQHK 113
>gi|307699779|ref|ZP_07636832.1| transposase [Mobiluncus mulieris FB024-16]
gi|307615041|gb|EFN94257.1| transposase [Mobiluncus mulieris FB024-16]
Length=105
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 42/65 (65%), Gaps = 5/65 (7%)
Query 38 GWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFF 92
G LG+S E+L RW +AE+D G +GV+ S ++ +EL +T +ILK+A++FF
Sbjct 37 GLKLGVSRESLCRWVNRAEIDQGERSGVTREESAEIRRLGRENAELRRTNDILKLASAFF 96
Query 93 ARKCD 97
A++ D
Sbjct 97 AKELD 101
>gi|336115814|ref|YP_004570580.1| putative transposase [Microlunatus phosphovorus NM-1]
gi|334683592|dbj|BAK33177.1| putative transposase [Microlunatus phosphovorus NM-1]
Length=103
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/67 (44%), Positives = 37/67 (56%), Gaps = 5/67 (7%)
Query 40 SLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSE-----LEQTIEILKVATSFFAR 94
LG+ E++RRW QAEVD G AG S +K + LE+ ILK AT FA
Sbjct 37 QLGVGKESVRRWVIQAEVDDGQRAGASTEELAEIKALKAKVRRLEEDNAILKSATVLFAG 96
Query 95 KCDPRHR 101
+ DPR+R
Sbjct 97 ELDPRNR 103
>gi|297625306|ref|YP_003687069.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|297625327|ref|YP_003687090.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|297625766|ref|YP_003687529.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
13 more sequence titles
Length=114
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (41%), Positives = 39/72 (55%), Gaps = 5/72 (6%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
+R LG E++R W QA+VD GVV GVS++ VK EL + E+LK A
Sbjct 42 QRVATQLGYGVESVRMWVKQADVDDGVVPGVSSAEEQRVKELEQENRELRRANEVLKRAA 101
Query 90 SFFARKCDPRHR 101
SFF + D +R
Sbjct 102 SFFGAELDRHYR 113
>gi|118463260|ref|YP_881465.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118463277|ref|YP_880919.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118464273|ref|YP_882454.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
13 more sequence titles
gi|118465489|ref|YP_882445.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118465612|ref|YP_881370.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118466352|ref|YP_881889.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118466359|ref|YP_881107.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|15619022|gb|AAL02531.1|AF232829_5 putative transposase subunit A [Mycobacterium avium]
gi|15619024|gb|AAL02533.1|AF232829_7 transposase subunit A [Mycobacterium avium]
gi|118164547|gb|ABK65444.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118164564|gb|ABK65461.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118165560|gb|ABK66457.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118166776|gb|ABK67673.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118166899|gb|ABK67796.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118167639|gb|ABK68536.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118167646|gb|ABK68543.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
Length=114
Score = 51.6 bits (122), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/74 (41%), Positives = 40/74 (55%), Gaps = 9/74 (12%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKV 87
+R LG E++R W Q ++D G+ GV+ S S VK ELEQ I EILK
Sbjct 42 QRVARQLGYGVESVRTWVRQVDIDEGLAPGVTTSESKKVK--ELEQEIRELKRANEILKR 99
Query 88 ATSFFARKCDPRHR 101
A SFF + D +H+
Sbjct 100 AASFFGAELDRQHK 113
>gi|5524308|gb|AAD44201.1|AF143772_3 IS1601-C [Mycobacterium avium]
gi|5524322|gb|AAD44215.1|AF143772_20 transposase [Mycobacterium avium]
gi|5524331|gb|AAD44224.1|AF143772_30 IS1601-C [Mycobacterium avium]
gi|5524343|gb|AAD44236.1|AF143772_43 IS1601-C [Mycobacterium avium]
gi|3170645|gb|AAC71698.1| unknown [Mycobacterium avium]
Length=114
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/91 (40%), Positives = 46/91 (51%), Gaps = 10/91 (10%)
Query 16 RVLRARFRPSPESGPPVHARRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK- 74
R LRA E G VH R LG E++R W QA++D G GVS + S +K
Sbjct 28 RTLRAEL--GTEHGT-VH--RVARQLGYGIESVRAWVRQADIDDGYAPGVSTAESKRIKD 82
Query 75 ----TSELEQTIEILKVATSFFARKCDPRHR 101
EL++ EILK A SFF + D +HR
Sbjct 83 LEQENRELKRANEILKRAASFFGAELDRQHR 113
>gi|296166208|ref|ZP_06848649.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898456|gb|EFG78021.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=115
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 9/73 (12%)
Query 36 RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA 88
R LG E++R WA QA++D G GV+ + S VK ELEQ + EILK A
Sbjct 44 RVARQLGYGVESVRSWARQADIDDGYEPGVTTTESKRVK--ELEQEVRELKRANEILKRA 101
Query 89 TSFFARKCDPRHR 101
SFF + D +H+
Sbjct 102 ASFFGAELDRQHK 114
>gi|296166194|ref|ZP_06848635.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898442|gb|EFG78007.1| IS3 family element [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=114
Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/73 (43%), Positives = 39/73 (54%), Gaps = 9/73 (12%)
Query 36 RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA 88
R LG E++R W QA++D G GVS + S VK ELEQ I EILK A
Sbjct 43 RVARQLGYGVESVRSWVRQADIDDGYAPGVSTAESRRVK--ELEQEIRELKRANEILKRA 100
Query 89 TSFFARKCDPRHR 101
SFF + D +H+
Sbjct 101 ASFFGAELDRQHK 113
>gi|118469824|ref|YP_886092.1| IS3 family protein element, transposase orfA [Mycobacterium smegmatis
str. MC2 155]
gi|118171111|gb|ABK72007.1| IS3 family protein element, transposase orfA [Mycobacterium smegmatis
str. MC2 155]
Length=91
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/73 (42%), Positives = 39/73 (54%), Gaps = 9/73 (12%)
Query 36 RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKVA 88
R LG E++R W QA++D G GV+ + S VK ELEQ I EILK A
Sbjct 20 RVARQLGYGVESVRSWVRQADIDDGHAPGVTTAESAKVK--ELEQEIRELKRANEILKRA 77
Query 89 TSFFARKCDPRHR 101
SFF + D +H+
Sbjct 78 ASFFGAELDRQHK 90
>gi|315441897|ref|YP_004074776.1| transposase [Mycobacterium sp. Spyr1]
gi|315260200|gb|ADT96941.1| Transposase [Mycobacterium sp. Spyr1]
Length=114
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (39%), Positives = 38/71 (54%), Gaps = 5/71 (7%)
Query 36 RCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATS 90
R LG E++R W QA++D G GVS + S +K EL++ EILK A S
Sbjct 43 RVARQLGYGVESVRSWVCQADIDDGYAPGVSTAESARIKELEQENRELKRANEILKRAAS 102
Query 91 FFARKCDPRHR 101
FF + D +H+
Sbjct 103 FFGAELDRQHK 113
>gi|152966414|ref|YP_001362198.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans
SRS30216]
gi|152966793|ref|YP_001362577.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans
SRS30216]
gi|151360931|gb|ABS03934.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans
SRS30216]
gi|151361310|gb|ABS04313.1| transposase IS3/IS911 family protein [Kineococcus radiotolerans
SRS30216]
Length=105
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (40%), Positives = 40/68 (59%), Gaps = 5/68 (7%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSV-----KTSELEQTIEILKVAT 89
+R G LGI+AETLR W QAEV++G G + + + + EL + EIL+ A+
Sbjct 34 KRIGGQLGINAETLRNWVLQAEVNAGDRPGTTTDAAARLAELERENRELRRANEILRRAS 93
Query 90 SFFARKCD 97
+FFA + D
Sbjct 94 AFFAAELD 101
>gi|260905477|ref|ZP_05913799.1| putative transposase orfA for insertion sequence element [Brevibacterium
linens BL2]
Length=89
Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/68 (39%), Positives = 39/68 (58%), Gaps = 5/68 (7%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
RR G LG++ ETLR W Q +VD+G G + + + +K EL + +ILK A+
Sbjct 18 RRIGDQLGVNPETLRSWVNQDQVDAGDRPGTTTAEAQRIKDLEKENRELRRANQILKSAS 77
Query 90 SFFARKCD 97
+FFA + D
Sbjct 78 AFFAAELD 85
>gi|315445684|ref|YP_004078563.1| transposase [Mycobacterium sp. Spyr1]
gi|315263987|gb|ADU00729.1| Transposase [Mycobacterium sp. Spyr1]
Length=114
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (40%), Positives = 40/74 (55%), Gaps = 9/74 (12%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVKTSELEQTI-------EILKV 87
+R LG E++R W QA++D G G+S + S VK +LEQ I EILK
Sbjct 42 QRVARQLGYGIESVRSWVRQADIDDGHTPGMSTTESARVK--DLEQEIRELKRANEILKR 99
Query 88 ATSFFARKCDPRHR 101
A SFF + D +H+
Sbjct 100 AASFFGAELDRQHK 113
>gi|119714334|ref|YP_921299.1| transposase IS3/IS911 family protein [Nocardioides sp. JS614]
gi|119534995|gb|ABL79612.1| transposase IS3/IS911 family protein [Nocardioides sp. JS614]
Length=109
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/74 (42%), Positives = 42/74 (57%), Gaps = 8/74 (10%)
Query 35 RRCGWSLGI-SAETLRRWAGQAEVDSGVVAGVSASRSGSV-----KTSELEQTIEILKVA 88
R LGI S+ETLR+W QAEVD G G + + K +ELE+ +ILK A
Sbjct 36 RTIAAQLGIGSSETLRKWVRQAEVDGGTRPGKTTEELAEIRELKKKVAELERANQILKSA 95
Query 89 TSFFARKCD--PRH 100
++FFA + D PR+
Sbjct 96 SAFFAAELDRQPRY 109
>gi|118465469|ref|YP_884154.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118466149|ref|YP_880697.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118166756|gb|ABK67653.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
gi|118167436|gb|ABK68333.1| ISAfe7, transposase OrfA [Mycobacterium avium 104]
Length=114
Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (37%), Positives = 40/72 (56%), Gaps = 5/72 (6%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
+R LG E++R W QA++D G+ GV+ + S V+ EL++ EILK A
Sbjct 42 QRVARQLGYGVESVRTWVRQADIDEGLAPGVTTAESKRVQELEQENRELKRANEILKRAA 101
Query 90 SFFARKCDPRHR 101
SFF + D +H+
Sbjct 102 SFFGAELDRQHK 113
>gi|126434809|ref|YP_001070500.1| transposase IS3/IS911 family protein [Mycobacterium sp. JLS]
gi|126234609|gb|ABN98009.1| transposase IS3/IS911 family protein [Mycobacterium sp. JLS]
Length=89
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/67 (44%), Positives = 41/67 (62%), Gaps = 7/67 (10%)
Query 41 LGI-SAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFAR 94
LGI +AET+R+W QAEVD+G G + S +K +EL++ ILK A++FFA
Sbjct 23 LGIGTAETVRKWVRQAEVDAGARPGTTTEESAELKKLRRENAELKRANAILKTASAFFAA 82
Query 95 KCD-PRH 100
+ D P H
Sbjct 83 ELDRPHH 89
>gi|309811935|ref|ZP_07705704.1| IS1137, transposase OrfA [Dermacoccus sp. Ellin185]
gi|308434105|gb|EFP57968.1| IS1137, transposase OrfA [Dermacoccus sp. Ellin185]
Length=122
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/67 (41%), Positives = 38/67 (57%), Gaps = 6/67 (8%)
Query 40 SLGISAETLRRWAGQAEVDSGVVAGVSASRSGSV-----KTSELEQTIEILKVATSFFAR 94
LG++ ETLR W QAEVD+G GV+ S + + EL + IL+ A++FFA
Sbjct 56 QLGVNPETLRNWVSQAEVDAGTRPGVTTSEHERLLELERENRELRRANAILRSASAFFAA 115
Query 95 KCD-PRH 100
+ D P H
Sbjct 116 ELDRPHH 122
>gi|334338205|ref|YP_004543357.1| transposase IS3/IS911 family protein [Isoptericola variabilis
225]
gi|334108573|gb|AEG45463.1| transposase IS3/IS911 family protein [Isoptericola variabilis
225]
Length=114
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/72 (35%), Positives = 39/72 (55%), Gaps = 5/72 (6%)
Query 35 RRCGWSLGISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVAT 89
+R LG E++R+W QA++D G GV+ + + ++ EL + EILK A
Sbjct 42 QRVASQLGYGVESVRQWVKQADIDDGHAPGVTTTEAKRIRELEQENRELRRANEILKRAA 101
Query 90 SFFARKCDPRHR 101
SFF + D +HR
Sbjct 102 SFFGAELDRQHR 113
>gi|297626839|ref|YP_003688602.1| transposase IS3/IS911 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
gi|296922604|emb|CBL57181.1| Transposase IS3/IS911 [Propionibacterium freudenreichii subsp.
shermanii CIRM-BIA1]
Length=103
Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/64 (38%), Positives = 37/64 (58%), Gaps = 5/64 (7%)
Query 43 ISAETLRRWAGQAEVDSGVVAGVSASRSGSVK-----TSELEQTIEILKVATSFFARKCD 97
+ AE+LRRW QAE+D+G G ++ ++ L + + ILK AT+FF + D
Sbjct 40 VGAESLRRWVIQAEIDAGDRGGQTSEEHAEIRRLKAENRALREDVAILKAATAFFVGELD 99
Query 98 PRHR 101
PR+R
Sbjct 100 PRNR 103
Lambda K H
0.319 0.131 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 128767090968
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40