BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2086
Length=201
Score E
Sequences producing significant alignments: (Bits) Value
gi|31793269|ref|NP_855762.1| hypothetical protein Mb2113 [Mycoba... 405 1e-111
gi|340627099|ref|YP_004745551.1| hypothetical protein MCAN_21121... 400 4e-110
gi|289554129|ref|ZP_06443339.1| conserved hypothetical protein [... 350 7e-95
gi|289762248|ref|ZP_06521626.1| conserved hypothetical protein [... 347 4e-94
gi|289758204|ref|ZP_06517582.1| conserved hypothetical protein [... 275 3e-72
gi|41408254|ref|NP_961090.1| hypothetical protein MAP2156 [Mycob... 145 4e-33
gi|336458101|gb|EGO37085.1| transposase [Mycobacterium avium sub... 138 4e-31
gi|315445641|ref|YP_004078520.1| transposase [Mycobacterium sp. ... 119 2e-25
gi|315445647|ref|YP_004078526.1| transposase [Mycobacterium sp. ... 119 2e-25
gi|108802542|ref|YP_642738.1| integrase catalytic subunit [Mycob... 115 3e-24
gi|119855371|ref|YP_935974.1| hypothetical protein Mkms_5987 [My... 115 4e-24
gi|315445694|ref|YP_004078573.1| transposase [Mycobacterium sp. ... 114 7e-24
gi|309810464|ref|ZP_07704288.1| IS6110, transposase family prote... 73.2 2e-11
gi|309811934|ref|ZP_07705703.1| transposase subunit B family pro... 71.6 7e-11
gi|326383843|ref|ZP_08205527.1| Integrase catalytic domain-conta... 69.3 3e-10
gi|259506188|ref|ZP_05749090.1| transposase [Corynebacterium eff... 67.0 2e-09
gi|25027798|ref|NP_737852.1| putative transposase [Corynebacteri... 67.0 2e-09
gi|284989780|ref|YP_003408334.1| Integrase catalytic domain-cont... 66.6 2e-09
gi|229492440|ref|ZP_04386244.1| transposase OrfB [Rhodococcus er... 63.2 2e-08
gi|296394771|ref|YP_003659655.1| integrase catalytic subunit [Se... 62.4 4e-08
gi|254380458|ref|ZP_04995824.1| transposase [Streptomyces sp. Mg... 62.4 4e-08
gi|315441841|ref|YP_004074720.1| transposase [Mycobacterium sp. ... 60.8 1e-07
gi|145221263|ref|YP_001131941.1| integrase catalytic subunit [My... 60.8 1e-07
gi|258652649|ref|YP_003201805.1| Integrase catalytic subunit [Na... 58.5 5e-07
gi|343926950|ref|ZP_08766442.1| putative transposase [Gordonia a... 58.2 7e-07
gi|343924851|ref|ZP_08764390.1| putative transposase [Gordonia a... 57.4 1e-06
gi|15619023|gb|AAL02532.1|AF232829_6 putative transposase subuni... 57.4 1e-06
gi|258651458|ref|YP_003200614.1| Integrase catalytic subunit [Na... 57.4 1e-06
gi|320012964|gb|ADW07813.1| Integrase catalytic region [Streptom... 57.0 1e-06
gi|291009721|ref|ZP_06567694.1| ISPsy21, transposase orfB [Sacch... 57.0 2e-06
gi|258652721|ref|YP_003201877.1| Integrase catalytic subunit [Na... 57.0 2e-06
gi|134101610|ref|YP_001107271.1| ISPsy21, transposase orfB [Sacc... 55.8 3e-06
gi|295837936|ref|ZP_06824869.1| transposase [Streptomyces sp. SP... 55.8 4e-06
gi|16551202|gb|AAL25737.1| transposase [Rhodococcus ruber] 55.5 5e-06
gi|296131117|ref|YP_003638367.1| Integrase catalytic region [Cel... 55.1 6e-06
gi|295835277|ref|ZP_06822210.1| transposase [Streptomyces sp. SP... 55.1 6e-06
gi|260907721|ref|ZP_05916043.1| putative transposase [Brevibacte... 54.7 8e-06
gi|4572557|gb|AAC71699.2| unknown [Mycobacterium avium] 54.3 1e-05
gi|118593350|ref|ZP_01550734.1| integrase, catalytic region [Sta... 54.3 1e-05
gi|118462685|ref|YP_880715.1| transposase [Mycobacterium avium 1... 54.3 1e-05
gi|5524330|gb|AAD44223.1|AF143772_29 IS1601-D [Mycobacterium avium] 53.9 1e-05
gi|77454755|ref|YP_345623.1| putative transposase [Rhodococcus e... 53.5 2e-05
gi|258513200|ref|YP_003189456.1| transposase [Acetobacter pasteu... 53.1 2e-05
gi|315657908|ref|ZP_07910786.1| transposase subunit B [Mobiluncu... 53.1 2e-05
gi|295836034|ref|ZP_06822967.1| transposase [Streptomyces sp. SP... 53.1 2e-05
gi|329115411|ref|ZP_08244164.1| Transposase for insertion sequen... 53.1 2e-05
gi|85717600|ref|ZP_01048541.1| integrase, catalytic region [Nitr... 52.8 3e-05
gi|334110761|ref|ZP_08485035.1| Integrase catalytic region [Meth... 52.8 3e-05
gi|260577463|ref|ZP_05845415.1| integrase catalytic region [Rhod... 52.8 3e-05
gi|329115407|ref|ZP_08244161.1| Transposase for insertion sequen... 52.8 3e-05
>gi|31793269|ref|NP_855762.1| hypothetical protein Mb2113 [Mycobacterium bovis AF2122/97]
gi|57116941|ref|NP_216602.2| hypothetical protein Rv2086 [Mycobacterium tuberculosis H37Rv]
gi|121637971|ref|YP_978195.1| hypothetical protein BCG_2106 [Mycobacterium bovis BCG str. Pasteur
1173P2]
56 more sequence titles
Length=201
Score = 405 bits (1042), Expect = 1e-111, Method: Compositional matrix adjust.
Identities = 200/201 (99%), Positives = 201/201 (100%), Gaps = 0/201 (0%)
Query 1 VRPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE 60
+RPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE
Sbjct 1 MRPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE 60
Query 61 ILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHIT 120
ILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHIT
Sbjct 61 ILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHIT 120
Query 121 HHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGM 180
HHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGM
Sbjct 121 HHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGM 180
Query 181 LADQRRSVRRTRITPRPSRLT 201
LADQRRSVRRTRITPRPSRLT
Sbjct 181 LADQRRSVRRTRITPRPSRLT 201
>gi|340627099|ref|YP_004745551.1| hypothetical protein MCAN_21121 [Mycobacterium canettii CIPT
140010059]
gi|340005289|emb|CCC44444.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059]
Length=202
Score = 400 bits (1029), Expect = 4e-110, Method: Compositional matrix adjust.
Identities = 197/201 (99%), Positives = 199/201 (99%), Gaps = 0/201 (0%)
Query 1 VRPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE 60
+RP TPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE
Sbjct 1 MRPTTPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE 60
Query 61 ILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHIT 120
ILA YYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAH+T
Sbjct 61 ILARYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHVT 120
Query 121 HHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGM 180
HHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGM
Sbjct 121 HHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGM 180
Query 181 LADQRRSVRRTRITPRPSRLT 201
LADQRRSVRRTRITPRPSRLT
Sbjct 181 LADQRRSVRRTRITPRPSRLT 201
>gi|289554129|ref|ZP_06443339.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
gi|289438761|gb|EFD21254.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN
605]
Length=174
Score = 350 bits (898), Expect = 7e-95, Method: Compositional matrix adjust.
Identities = 173/174 (99%), Positives = 174/174 (100%), Gaps = 0/174 (0%)
Query 28 LAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 87
+AVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA
Sbjct 1 MAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 60
Query 88 HLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGPGPRPGGSAMAGFSNEPA 147
HLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGPGPRPGGSAMAGFSNEPA
Sbjct 61 HLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGPGPRPGGSAMAGFSNEPA 120
Query 148 GSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGMLADQRRSVRRTRITPRPSRLT 201
GSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGMLADQRRSVRRTRITPRPSRLT
Sbjct 121 GSGRLHLRADDVEFRLHRVRGRRLRRCDRGLGMLADQRRSVRRTRITPRPSRLT 174
>gi|289762248|ref|ZP_06521626.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
gi|289709754|gb|EFD73770.1| conserved hypothetical protein [Mycobacterium tuberculosis GM
1503]
Length=193
Score = 347 bits (891), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 172/172 (100%), Positives = 172/172 (100%), Gaps = 0/172 (0%)
Query 30 VHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWAHL 89
VHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWAHL
Sbjct 22 VHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWAHL 81
Query 90 QRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGPGPRPGGSAMAGFSNEPAGS 149
QRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGPGPRPGGSAMAGFSNEPAGS
Sbjct 82 QRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGPGPRPGGSAMAGFSNEPAGS 141
Query 150 GRLHLRADDVEFRLHRVRGRRLRRCDRGLGMLADQRRSVRRTRITPRPSRLT 201
GRLHLRADDVEFRLHRVRGRRLRRCDRGLGMLADQRRSVRRTRITPRPSRLT
Sbjct 142 GRLHLRADDVEFRLHRVRGRRLRRCDRGLGMLADQRRSVRRTRITPRPSRLT 193
>gi|289758204|ref|ZP_06517582.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
gi|289713768|gb|EFD77780.1| conserved hypothetical protein [Mycobacterium tuberculosis T85]
Length=202
Score = 275 bits (703), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 177/202 (88%), Positives = 180/202 (90%), Gaps = 1/202 (0%)
Query 1 VRPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYF-ADRAAAPSKRALWDTTIT 59
+RPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYF R +A R +
Sbjct 1 MRPATPLICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFRGSRGSALRTRTVGHHNHR 60
Query 60 EILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHI 119
PDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHI
Sbjct 61 NSWPATTNPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHI 120
Query 120 THHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLG 179
THHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLG
Sbjct 121 THHRTRPGRGPGPRPGGSAMAGFSNEPAGSGRLHLRADDVEFRLHRVRGRRLRRCDRGLG 180
Query 180 MLADQRRSVRRTRITPRPSRLT 201
MLADQRRSVRRTRITPRPSRLT
Sbjct 181 MLADQRRSVRRTRITPRPSRLT 202
>gi|41408254|ref|NP_961090.1| hypothetical protein MAP2156 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396609|gb|AAS04473.1| hypothetical protein MAP_2156 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=320
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/107 (64%), Positives = 80/107 (75%), Gaps = 0/107 (0%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYY 66
+ICAF +H+ +GV PICR L HG +IA RT++A A APS RALWDT ITE+LAGYY
Sbjct 1 MICAFITEHRARFGVAPICRVLTEHGCKIAPRTFYAWLARAPSARALWDTVITEVLAGYY 60
Query 67 EPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
EPD G+R PE LYG+ KMWAHLQRQG TV+ +MRANGWRGV
Sbjct 61 EPDEHGRRKPESLYGATKMWAHLQRQGIGVARCTVERLMRANGWRGV 107
>gi|336458101|gb|EGO37085.1| transposase [Mycobacterium avium subsp. paratuberculosis S397]
Length=317
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 66/104 (64%), Positives = 77/104 (75%), Gaps = 0/104 (0%)
Query 10 AFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPD 69
AF +H+ +GV PICR L HG +IA RT++A A APS RALWDT ITE+LAGYYEPD
Sbjct 1 AFITEHRARFGVAPICRVLTEHGCKIAPRTFYAWLARAPSARALWDTVITEVLAGYYEPD 60
Query 70 AEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
G+R PE LYG+ KMWAHLQRQG TV+ +MRANGWRGV
Sbjct 61 EHGRRKPESLYGATKMWAHLQRQGIGVARCTVERLMRANGWRGV 104
>gi|315445641|ref|YP_004078520.1| transposase [Mycobacterium sp. Spyr1]
gi|315263944|gb|ADU00686.1| transposase [Mycobacterium sp. Spyr1]
Length=255
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/151 (48%), Positives = 84/151 (56%), Gaps = 10/151 (6%)
Query 28 LAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 87
L+ HG QIA RT++A A PS RALWDT ITEILAG+YEPD G+R PE LYG+ KMWA
Sbjct 2 LSEHGCQIAPRTFYAWLARPPSARALWDTVITEILAGFYEPDEHGRRKPESLYGATKMWA 61
Query 88 HLQRQGFRWPSATVKTIMRANGWRGVP--LAAHITHHRTRPGRGPG--------PRPGGS 137
HLQRQG TV+ +MRANGWRGV H T GR P P P
Sbjct 62 HLQRQGIAVARCTVERLMRANGWRGVTRRKKVHTTIADPAAGRAPDLVDRQFRVPAPNVL 121
Query 138 AMAGFSNEPAGSGRLHLRADDVEFRLHRVRG 168
+A F+ SG A ++ R+ G
Sbjct 122 LVADFTYVRLASGVFVYTAFAIDAYAGRIVG 152
>gi|315445647|ref|YP_004078526.1| transposase [Mycobacterium sp. Spyr1]
gi|315446744|ref|YP_004079623.1| transposase [Mycobacterium sp. Spyr1]
gi|315263950|gb|ADU00692.1| transposase [Mycobacterium sp. Spyr1]
gi|315265047|gb|ADU01789.1| transposase [Mycobacterium sp. Spyr1]
Length=300
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 71/151 (48%), Positives = 84/151 (56%), Gaps = 10/151 (6%)
Query 28 LAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 87
L+ HG QIA RT++A A PS RALWDT ITEILAG+YEPD G+R PE LYG+ KMWA
Sbjct 2 LSEHGCQIAPRTFYAWLARPPSARALWDTVITEILAGFYEPDEHGRRKPESLYGATKMWA 61
Query 88 HLQRQGFRWPSATVKTIMRANGWRGVP--LAAHITHHRTRPGRGPG--------PRPGGS 137
HLQRQG TV+ +MRANGWRGV H T GR P P P
Sbjct 62 HLQRQGIAVARCTVERLMRANGWRGVTRRKKVHTTIADPAAGRAPDLVDRQFRVPAPNVL 121
Query 138 AMAGFSNEPAGSGRLHLRADDVEFRLHRVRG 168
+A F+ SG A ++ R+ G
Sbjct 122 LVADFTYVRLASGVFVYTAFAIDAYAGRIVG 152
>gi|108802542|ref|YP_642738.1| integrase catalytic subunit [Mycobacterium sp. MCS]
gi|108802547|ref|YP_642743.1| integrase catalytic subunit [Mycobacterium sp. MCS]
gi|119855043|ref|YP_935648.1| integrase catalytic subunit [Mycobacterium sp. KMS]
gi|108772961|gb|ABG11682.1| Integrase, catalytic region [Mycobacterium sp. MCS]
gi|108772966|gb|ABG11687.1| Integrase, catalytic region [Mycobacterium sp. MCS]
gi|119697761|gb|ABL94833.1| Integrase, catalytic region [Mycobacterium sp. KMS]
Length=304
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/86 (67%), Positives = 64/86 (75%), Gaps = 0/86 (0%)
Query 28 LAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 87
L H V IA RT+ A APSKRALWD TITEILAGYYEPD G+R PE LYGSLKMWA
Sbjct 2 LTEHAVPIAPRTFHAWAVRAPSKRALWDATITEILAGYYEPDEHGRRRPESLYGSLKMWA 61
Query 88 HLQRQGFRWPSATVKTIMRANGWRGV 113
HLQR+G +TV+ +MR NGW+GV
Sbjct 62 HLQREGIPVAKSTVERLMRKNGWQGV 87
>gi|119855371|ref|YP_935974.1| hypothetical protein Mkms_5987 [Mycobacterium sp. KMS]
gi|119698088|gb|ABL95159.1| hypothetical protein Mkms_5987 [Mycobacterium sp. KMS]
Length=254
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/86 (67%), Positives = 64/86 (75%), Gaps = 0/86 (0%)
Query 28 LAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 87
L H V IA RT+ A APSKRALWD TITEILAGYYEPD G+R PE LYGSLKMWA
Sbjct 2 LTEHAVPIAPRTFHAWAVRAPSKRALWDATITEILAGYYEPDEHGRRRPESLYGSLKMWA 61
Query 88 HLQRQGFRWPSATVKTIMRANGWRGV 113
HLQR+G +TV+ +MR NGW+GV
Sbjct 62 HLQREGIPVAKSTVERLMRKNGWQGV 87
>gi|315445694|ref|YP_004078573.1| transposase [Mycobacterium sp. Spyr1]
gi|315263997|gb|ADU00739.1| transposase [Mycobacterium sp. Spyr1]
Length=300
Score = 114 bits (286), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/86 (63%), Positives = 62/86 (73%), Gaps = 0/86 (0%)
Query 28 LAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPECLYGSLKMWA 87
L HG QIA RT++A PS R LWDT ITE+LAG+YEPD G+R PE LYG+ KMWA
Sbjct 2 LTEHGCQIAPRTFYAWLTRPPSARTLWDTVITEVLAGFYEPDEHGRRKPESLYGATKMWA 61
Query 88 HLQRQGFRWPSATVKTIMRANGWRGV 113
HLQRQG TV+ +MRANGWRGV
Sbjct 62 HLQRQGIAVARCTVERLMRANGWRGV 87
>gi|309810464|ref|ZP_07704288.1| IS6110, transposase family protein [Dermacoccus sp. Ellin185]
gi|308435577|gb|EFP59385.1| IS6110, transposase family protein [Dermacoccus sp. Ellin185]
Length=208
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/123 (38%), Positives = 66/123 (54%), Gaps = 9/123 (7%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDA 70
+ D+HKH +GV PIC L+ G QIA TY+A + PS R+L D + + +E +
Sbjct 3 YIDEHKHEFGVEPICATLSAAGTQIAPSTYYAAKTRTPSVRSLRDEQVLVEIRRVHEANY 62
Query 71 EGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGP 130
+YG+ K+ A L+R+G + TV+ +MRA G RG+ A T PGRGP
Sbjct 63 -------GVYGARKVHAQLRREGLQVARCTVERLMRAAGLRGISRAK--GPRTTVPGRGP 113
Query 131 GPR 133
R
Sbjct 114 DER 116
>gi|309811934|ref|ZP_07705703.1| transposase subunit B family protein [Dermacoccus sp. Ellin185]
gi|308434104|gb|EFP57967.1| transposase subunit B family protein [Dermacoccus sp. Ellin185]
Length=200
Score = 71.6 bits (174), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/124 (41%), Positives = 65/124 (53%), Gaps = 9/124 (7%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDA 70
F D KH +GV PICR L GV+IA TY+A + PS RA+ D + + ++ D
Sbjct 3 FIDDRKHEFGVEPICRTLTEAGVKIAPSTYYAAKTRPPSPRAVRDVEMAAQIRRVHK-DN 61
Query 71 EGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGP 130
G +YG+ K+ A L R+G TV+ +MRA G RGV A T PGRGP
Sbjct 62 YG------VYGARKVHAELVREGITVARCTVERLMRAAGLRGVSRAK--GPRTTIPGRGP 113
Query 131 GPRP 134
RP
Sbjct 114 DDRP 117
>gi|326383843|ref|ZP_08205527.1| Integrase catalytic domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
gi|326197302|gb|EGD54492.1| Integrase catalytic domain-containing protein [Gordonia neofelifaecis
NRRL B-59395]
Length=308
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/124 (39%), Positives = 65/124 (53%), Gaps = 9/124 (7%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDA 70
+ D++KH +GV PICR L G QIA TY+A + PSKRAL D E+L + +
Sbjct 3 YIDQYKHEFGVEPICRTLTAAGTQIAPSTYYAFKTRPPSKRALRD---EELLIEIHRVHS 59
Query 71 EGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGRGP 130
+YG+ K+ A L+R+G TV+ +MR G RG+ A T GRGP
Sbjct 60 ANF----GVYGAKKVHAQLRREGVVVARCTVERLMRVAGLRGISRAK--GPRTTISGRGP 113
Query 131 GPRP 134
RP
Sbjct 114 DSRP 117
>gi|259506188|ref|ZP_05749090.1| transposase [Corynebacterium efficiens YS-314]
gi|259166216|gb|EEW50770.1| transposase [Corynebacterium efficiens YS-314]
Length=172
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/133 (40%), Positives = 66/133 (50%), Gaps = 15/133 (11%)
Query 2 RPATPLICAFGDKHKHT-YGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE 60
RP PLI F D+ + + V IC L GVQ+A+RTY + AAP+ R + D I
Sbjct 4 RPPKPLIADFIDQMREEGFAVELICCVLREQGVQVAARTYRYWKKAAPATRIVSDAQILN 63
Query 61 ILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHIT 120
L D +G PE LYG KM A+L+RQG TV +MR G G I+
Sbjct 64 ALH-----DLKGT--PESLYGRRKMVAYLRRQGHAVAHCTVDRLMRLAGMNG------IS 110
Query 121 HHRTRP-GRGPGP 132
RT+P PGP
Sbjct 111 RRRTKPRTTVPGP 123
>gi|25027798|ref|NP_737852.1| putative transposase [Corynebacterium efficiens YS-314]
gi|23493081|dbj|BAC18052.1| putative transposase [Corynebacterium efficiens YS-314]
Length=207
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/133 (40%), Positives = 66/133 (50%), Gaps = 15/133 (11%)
Query 2 RPATPLICAFGDKHKHT-YGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE 60
RP PLI F D+ + + V IC L GVQ+A+RTY + AAP+ R + D I
Sbjct 39 RPPKPLIADFIDQMREEGFAVELICCVLREQGVQVAARTYRYWKKAAPATRIVSDAQILN 98
Query 61 ILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHIT 120
L D +G PE LYG KM A+L+RQG TV +MR G G I+
Sbjct 99 ALH-----DLKGT--PESLYGRRKMVAYLRRQGHAVAHCTVDRLMRLAGMNG------IS 145
Query 121 HHRTRP-GRGPGP 132
RT+P PGP
Sbjct 146 RRRTKPRTTVPGP 158
>gi|284989780|ref|YP_003408334.1| Integrase catalytic domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284063025|gb|ADB73963.1| Integrase catalytic region [Geodermatophilus obscurus DSM 43160]
Length=311
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/106 (36%), Positives = 56/106 (53%), Gaps = 7/106 (6%)
Query 8 ICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYE 67
+ + D+H+ +GV PICRAL G +IA TY+A R PS RA+ D + + +E
Sbjct 1 MIDYIDQHRQEFGVEPICRALTEAGTKIAPSTYYAARTRPPSDRAVRDEQLKPEIRRVFE 60
Query 68 PDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+ +YG K+W LQR+G R P ++ +MR G GV
Sbjct 61 VNL-------GVYGVRKVWRTLQREGHRVPRCQIERLMRELGLAGV 99
>gi|229492440|ref|ZP_04386244.1| transposase OrfB [Rhodococcus erythropolis SK121]
gi|229320669|gb|EEN86486.1| transposase OrfB [Rhodococcus erythropolis SK121]
Length=134
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/106 (35%), Positives = 55/106 (52%), Gaps = 7/106 (6%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYY 66
+I F +++K YGV P+CR L+ HG IA TY+ R + S+RAL D E+ A
Sbjct 1 MIIDFINRYKSEYGVEPMCRVLSEHGCSIAPSTYYDARNRSASRRALRD---EELKAEVS 57
Query 67 EPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRG 112
AE +YG+ K+W ++R+G TV+ +M G G
Sbjct 58 RVHAENY----SVYGARKVWLEMRREGIDVARCTVERLMGVLGLEG 99
>gi|296394771|ref|YP_003659655.1| integrase catalytic subunit [Segniliparus rotundus DSM 44985]
gi|296181918|gb|ADG98824.1| Integrase catalytic region [Segniliparus rotundus DSM 44985]
Length=250
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/102 (35%), Positives = 58/102 (57%), Gaps = 4/102 (3%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDA 70
F D ++ +GV P+CR L HGV+IA RTY+A ++ S R++ D + ++ +E
Sbjct 4 FVDANRERFGVEPVCRVLKGHGVKIAPRTYWAAKSRPASARSVRDQELKALITDVFEDRL 63
Query 71 EGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRG 112
+G+ L G+ K++ L+R G + TV+ +MR G RG
Sbjct 64 KGR----GLAGARKVYHLLKRDGHQVARCTVERLMRELGLRG 101
>gi|254380458|ref|ZP_04995824.1| transposase [Streptomyces sp. Mg1]
gi|194339369|gb|EDX20335.1| transposase [Streptomyces sp. Mg1]
Length=367
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/114 (36%), Positives = 57/114 (50%), Gaps = 10/114 (8%)
Query 2 RPATPLICAFGDKHKHTYG-VTPICRALAVHGVQIASRTYFA--DRAAAPSKRALWDTTI 58
RPAT + F D+ K +G V PICR L + +IA TY+A R PS R + D +
Sbjct 52 RPATHALVTFVDESKGRFGGVEPICRTLTEYDCKIAPSTYYAAKKREVVPSPRRVRDAFL 111
Query 59 TEILAGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRG 112
E++ YE + +YG+ K+W L RQG TV+ +MR G G
Sbjct 112 KELITEVYETNF-------SVYGARKVWRELNRQGHTVARCTVERLMRELGIAG 158
>gi|315441841|ref|YP_004074720.1| transposase [Mycobacterium sp. Spyr1]
gi|315260144|gb|ADT96885.1| transposase [Mycobacterium sp. Spyr1]
Length=320
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (39%), Positives = 52/94 (56%), Gaps = 2/94 (2%)
Query 19 YGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPEC 78
+GV P+C L+ HG+ I+ TY+ A P++R + D + EI+ E +G R +
Sbjct 24 WGVEPMCAVLSEHGIAISPSTYYEWIAKTPTRREIRDAELVEIITAAREGKRKG-RFVQT 82
Query 79 LYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRG 112
L GS K+W L+ QG TV+ IMR NGW G
Sbjct 83 L-GSRKLWIWLRGQGHDVARCTVERIMRENGWEG 115
>gi|145221263|ref|YP_001131941.1| integrase catalytic subunit [Mycobacterium gilvum PYR-GCK]
gi|145213749|gb|ABP43153.1| Integrase, catalytic region [Mycobacterium gilvum PYR-GCK]
Length=308
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/94 (39%), Positives = 52/94 (56%), Gaps = 2/94 (2%)
Query 19 YGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEGKRPPEC 78
+GV P+C L+ HG+ I+ TY+ A P++R + D + EI+ E +G R +
Sbjct 12 WGVEPMCAVLSEHGIAISPSTYYEWIAKTPTRREIRDAELVEIITAAREGKRKG-RFVQT 70
Query 79 LYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRG 112
L GS K+W L+ QG TV+ IMR NGW G
Sbjct 71 L-GSRKLWIWLRGQGHDVARCTVERIMRENGWEG 103
>gi|258652649|ref|YP_003201805.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258555874|gb|ACV78816.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=312
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/109 (36%), Positives = 54/109 (50%), Gaps = 11/109 (10%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFAD--RAAAPSKRALWDTTITEILAG 64
+ICA+ D HKH +GV PICR L+ H + IA +Y+A R +P+ RA + T I
Sbjct 1 MICAYIDAHKHRFGVEPICRVLSEHAMPIAPSSYYAHRRRPVSPALRAEAELVNTVI--- 57
Query 65 YYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+ R LYG KMW + ++G V +M G RGV
Sbjct 58 ------DLHREHHGLYGVRKMWHLMTQEGHLVGRDQVARLMTIAGLRGV 100
>gi|343926950|ref|ZP_08766442.1| putative transposase [Gordonia alkanivorans NBRC 16433]
gi|343763137|dbj|GAA13368.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=208
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 51/90 (57%), Gaps = 4/90 (4%)
Query 6 PLICAFGDKHK-HTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAG 64
P+I AF D+ + + + V ICR L G IA+RTY A R AP+ R + D + + +
Sbjct 3 PMIVAFIDQMRANGFAVESICRVLREQGCTIAARTYRAWRTRAPAARTVSDAHVVDAVRN 62
Query 65 -YYEPDAEGKRP--PECLYGSLKMWAHLQR 91
+ D +G+R PE LYG +KM AHL R
Sbjct 63 VVWRTDDDGRRKMTPEGLYGRVKMRAHLHR 92
>gi|343924851|ref|ZP_08764390.1| putative transposase [Gordonia alkanivorans NBRC 16433]
gi|343765358|dbj|GAA11316.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=318
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/109 (38%), Positives = 55/109 (51%), Gaps = 8/109 (7%)
Query 6 PLICAFGDKHK-HTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAG 64
PLI F D + + V ICR L G+Q+A RTY + + PS R + D +T+ L
Sbjct 3 PLIVQFIDDMRAQNFRVESICRVLTTQGIQVAPRTYRNWKTSPPSARTITDAHLTKELRS 62
Query 65 YYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
AEG LYG KM A+L+R+G + TV +MR G GV
Sbjct 63 TIGT-AEG------LYGRRKMTAYLRRKGHHVAACTVDRLMRDEGLNGV 104
>gi|15619023|gb|AAL02532.1|AF232829_6 putative transposase subunit B [Mycobacterium avium]
gi|15619025|gb|AAL02534.1|AF232829_8 transposase subunit B [Mycobacterium avium]
Length=306
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/103 (34%), Positives = 51/103 (50%), Gaps = 7/103 (6%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDA 70
F D ++ +GV PIC L G+Q+A TY+ +A PS RAL D + L ++ +
Sbjct 4 FIDDNRGEFGVEPICTVLRSAGLQVALSTYYDAKARVPSARALRDAVLGPALCQLWKDN- 62
Query 71 EGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
C+YG+ K+W +R G V +MRA G GV
Sbjct 63 ------YCVYGARKLWKTARRDGHDVGRDQVARLMRAAGIEGV 99
>gi|258651458|ref|YP_003200614.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258651462|ref|YP_003200618.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258554683|gb|ACV77625.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
gi|258554687|gb|ACV77629.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=312
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/109 (36%), Positives = 53/109 (49%), Gaps = 11/109 (10%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFAD--RAAAPSKRALWDTTITEILAG 64
+ICA+ D HKH +GV PICR L+ H + IA +Y+A R +P+ RA T I
Sbjct 1 MICAYIDAHKHRFGVEPICRVLSEHAMPIAPSSYYAHRRRPVSPALRAEAHLVNTVI--- 57
Query 65 YYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+ R LYG KMW + ++G V +M G RGV
Sbjct 58 ------DLHREHHGLYGVRKMWHLMTQEGHLVGRDQVARLMTIAGLRGV 100
>gi|320012964|gb|ADW07813.1| Integrase catalytic region [Streptomyces flavogriseus ATCC 33331]
Length=302
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/109 (38%), Positives = 53/109 (49%), Gaps = 15/109 (13%)
Query 9 CAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITE----ILAG 64
A+ D+HK +GV PIC LA IA TY+A R S R+L D +TE I G
Sbjct 3 VAYIDQHKDLFGVQPICDVLAETDAPIAPSTYYAARTRPASARSLRDEHLTEEIHRIHTG 62
Query 65 YYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
Y +YG+ K+ A L R+ TV+ +MRA G RGV
Sbjct 63 NY-----------GVYGARKIHAALVREDITVARCTVERLMRATGLRGV 100
>gi|291009721|ref|ZP_06567694.1| ISPsy21, transposase orfB [Saccharopolyspora erythraea NRRL 2338]
Length=132
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/106 (31%), Positives = 51/106 (49%), Gaps = 12/106 (11%)
Query 8 ICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYE 67
+ A D HK +GV PICR L + TY+A +A P++R+L D + + +E
Sbjct 1 MTAMIDDHKDRFGVEPICRVL-----EFPPSTYYAHKARKPARRSLRDEELLVQIRRVHE 55
Query 68 PDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
A YG+ ++W L+R G T++ +M +G GV
Sbjct 56 ASART-------YGARRIWHQLRRDGIEVAPCTIERLMHVHGIEGV 94
>gi|258652721|ref|YP_003201877.1| Integrase catalytic subunit [Nakamurella multipartita DSM 44233]
gi|258555946|gb|ACV78888.1| Integrase catalytic region [Nakamurella multipartita DSM 44233]
Length=312
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/109 (34%), Positives = 55/109 (51%), Gaps = 11/109 (10%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFAD--RAAAPSKRALWDTTITEILAG 64
+ICA+ D HKH +GV PICR L+ H + IA +Y+A R +P+ RA + T I
Sbjct 1 MICAYIDAHKHRFGVEPICRVLSEHAMPIAPSSYYAHRRRPVSPALRAEAELVNTVI--- 57
Query 65 YYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+ R +YG KMW + ++G + + +M G +GV
Sbjct 58 ------DLHREHHGVYGVRKMWHLMTQEGHQVGRDQIARLMSIAGLQGV 100
>gi|134101610|ref|YP_001107271.1| ISPsy21, transposase orfB [Saccharopolyspora erythraea NRRL 2338]
gi|133914233|emb|CAM04346.1| ISPsy21, transposase orfB [Saccharopolyspora erythraea NRRL 2338]
Length=129
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/101 (31%), Positives = 49/101 (49%), Gaps = 12/101 (11%)
Query 13 DKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEG 72
D HK +GV PICR L + TY+A +A P++R+L D + + +E A
Sbjct 3 DDHKDRFGVEPICRVL-----EFPPSTYYAHKARKPARRSLRDEELLVQIRRVHEASART 57
Query 73 KRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
YG+ ++W L+R G T++ +M +G GV
Sbjct 58 -------YGARRIWHQLRRDGIEVAPCTIERLMHVHGIEGV 91
>gi|295837936|ref|ZP_06824869.1| transposase [Streptomyces sp. SPB74]
gi|197699181|gb|EDY46114.1| transposase [Streptomyces sp. SPB74]
Length=306
Score = 55.8 bits (133), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/126 (36%), Positives = 60/126 (48%), Gaps = 15/126 (11%)
Query 9 CAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEP 68
A+ D++K T+GV PIC LA IA TY+A PS R+ D +TE + +
Sbjct 3 VAYIDQYKETFGVQPICDVLAETDAPIAPSTYYAAHNRPPSARSPRDGELTEDIRRIH-A 61
Query 69 DAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGR 128
D G +YG+ K+ A L R+G TV+ +MR G RGV RTR R
Sbjct 62 DNYG------VYGARKVHAALVREGVEVARCTVERLMRQAGLRGVI--------RTRSPR 107
Query 129 GPGPRP 134
P P
Sbjct 108 TTRPAP 113
>gi|16551202|gb|AAL25737.1| transposase [Rhodococcus ruber]
Length=420
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 34/108 (32%), Positives = 53/108 (50%), Gaps = 8/108 (7%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRA-AAPSKRALWDTTITEILAGY 65
LI + D+++H +GV PIC L HG++IA TY+A + S AL + T + G+
Sbjct 109 LIVEYIDEYRHLFGVDPICTVLKEHGIKIAPSTYYAAKKRGTVSAAALEEAYATNTVHGF 168
Query 66 YEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+ + LYG+ K+W ++R G V +M G GV
Sbjct 169 FVANRR-------LYGAKKIWHAMKRAGHEIGRDQVARLMTICGAEGV 209
>gi|296131117|ref|YP_003638367.1| Integrase catalytic region [Cellulomonas flavigena DSM 20109]
gi|296022932|gb|ADG76168.1| Integrase catalytic region [Cellulomonas flavigena DSM 20109]
Length=320
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/110 (35%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query 10 AFGDKHKHT------YGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILA 63
A+ D H+H GV PIC L +IA TY+A + PS RA+ D + ++
Sbjct 2 AYLDAHRHQVVEGRQLGVEPICAVLKDTAAKIAPSTYYAAKTRKPSARAVRDARLLPLVR 61
Query 64 GYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+ D G +YG+ K+WA L RQG TV+ +M A+G RG+
Sbjct 62 KVH-ADNLG------VYGARKVWAELNRQGTTVARCTVERLMTADGLRGI 104
>gi|295835277|ref|ZP_06822210.1| transposase [Streptomyces sp. SPB74]
gi|295825410|gb|EFG64236.1| transposase [Streptomyces sp. SPB74]
Length=293
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/126 (36%), Positives = 60/126 (48%), Gaps = 15/126 (11%)
Query 9 CAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEP 68
A+ D++K T+GV PIC LA IA TY+A PS R+ D +TE + +
Sbjct 3 VAYIDQYKETFGVQPICDVLAETDAPIAPSTYYAAHNRPPSARSPRDGELTEDIRRIH-A 61
Query 69 DAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGR 128
D G +YG+ K+ A L R+G TV+ +MR G RGV RTR R
Sbjct 62 DNYG------VYGARKVHAALVREGVEVARCTVERLMRQAGLRGVI--------RTRSPR 107
Query 129 GPGPRP 134
P P
Sbjct 108 TTRPAP 113
>gi|260907721|ref|ZP_05916043.1| putative transposase [Brevibacterium linens BL2]
Length=307
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/111 (34%), Positives = 55/111 (50%), Gaps = 11/111 (9%)
Query 7 LICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYY 66
+I F D++KH +GV PI RAL +IA +Y+A + PS RAL D + ++ Y
Sbjct 1 MIVDFIDENKHEFGVEPIVRALKGTAARIAVSSYYAFKKRQPSVRALRDADLMIVIKDVY 60
Query 67 EPDAEGKRPPECLYGSLKMWAHLQRQ-GFRWPSA---TVKTIMRANGWRGV 113
E + YG KMW + R R+ + T++ +MR G GV
Sbjct 61 EANY-------SCYGVRKMWKAINRDYADRFGNVARCTIERLMRQLGIDGV 104
>gi|4572557|gb|AAC71699.2| unknown [Mycobacterium avium]
Length=305
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (31%), Positives = 51/104 (50%), Gaps = 7/104 (6%)
Query 10 AFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPD 69
AF D ++ +GV PIC L G+Q+A TY+A++ PS RA D + ++ +E +
Sbjct 2 AFIDANRDEFGVEPICTVLRSAGLQVAPSTYYANKTRTPSARAQRDAVMRPVITQLWEDN 61
Query 70 AEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+YG+ K+W +R G + +MR G GV
Sbjct 62 YR-------VYGARKLWKAARRAGHDIGRDQIARLMREAGIAGV 98
>gi|118593350|ref|ZP_01550734.1| integrase, catalytic region [Stappia aggregata IAM 12614]
gi|118434028|gb|EAV40685.1| integrase, catalytic region [Stappia aggregata IAM 12614]
Length=104
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/114 (34%), Positives = 55/114 (49%), Gaps = 17/114 (14%)
Query 8 ICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAP-----SKRALWDTTITEIL 62
+ AF ++H+ +GV PICR L IA TY+ + A S RA DTT+ +
Sbjct 1 MIAFIEEHRGVFGVEPICRLLP-----IAPSTYYENIAKREDVDRLSVRARRDTTLKIEI 55
Query 63 AGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLA 116
+E + +YG K+W LQR GF V +MR+ G+RG +A
Sbjct 56 RRVFEENFR-------VYGVRKIWRQLQRAGFDIARCPVSRLMRSMGFRGSSVA 102
>gi|118462685|ref|YP_880715.1| transposase [Mycobacterium avium 104]
gi|118462715|ref|YP_881684.1| transposase [Mycobacterium avium 104]
gi|118464055|ref|YP_880912.1| transposase [Mycobacterium avium 104]
12 more sequence titles
Length=305
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (31%), Positives = 51/104 (50%), Gaps = 7/104 (6%)
Query 10 AFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPD 69
AF D ++ +GV PIC L G+Q+A TY+A++ PS RA D + ++ +E +
Sbjct 2 AFIDANRDEFGVEPICTVLRSAGLQVAPSTYYANKTRTPSARAQRDAVMRPVITQLWEDN 61
Query 70 AEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+YG+ K+W +R G + +MR G GV
Sbjct 62 YR-------VYGARKLWKAARRAGHDIGRDQIARLMREAGIAGV 98
>gi|5524330|gb|AAD44223.1|AF143772_29 IS1601-D [Mycobacterium avium]
Length=305
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/104 (31%), Positives = 51/104 (50%), Gaps = 7/104 (6%)
Query 10 AFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPD 69
AF D ++ +GV PIC L G+Q+A TY+A++ PS RA D + ++ +E +
Sbjct 2 AFIDANRDEFGVEPICTVLRSAGLQVAPSTYYANKTRTPSARAQRDAVMRPVITQLWEDN 61
Query 70 AEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
+YG+ K+W +R G + +MR G GV
Sbjct 62 YR-------VYGARKLWKAARRAGHDIGRDQIARLMREAGIAGV 98
>gi|77454755|ref|YP_345623.1| putative transposase [Rhodococcus erythropolis PR4]
gi|77019755|dbj|BAE46131.1| putative transposase [Rhodococcus erythropolis PR4]
Length=109
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 7/100 (7%)
Query 13 DKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEPDAEG 72
D+H +GV PIC L V IA TY A + S R+ D ++E +A + +
Sbjct 7 DRHTGEHGVQPICDTLKDTDVAIAPSTYCAAKTHPESARSTRDRELSEQIATIHHDNYS- 65
Query 73 KRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRG 112
+YG LK++A ++RQG TV+ +M+ G +G
Sbjct 66 ------VYGVLKVYAEMRRQGTPVARCTVERLMKKAGLKG 99
>gi|258513200|ref|YP_003189456.1| transposase [Acetobacter pasteurianus IFO 3283-01]
gi|256635103|dbj|BAI01077.1| transposase [Acetobacter pasteurianus IFO 3283-01]
gi|256638158|dbj|BAI04125.1| transposase [Acetobacter pasteurianus IFO 3283-03]
6 more sequence titles
Length=140
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (31%), Positives = 59/125 (48%), Gaps = 15/125 (12%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFAD--RAAAPSKRALWDTTITEILAGYYEP 68
F ++H+ TYGV ICR L+ IA Y+A R P R+ D + + + +
Sbjct 4 FIEEHRQTYGVGSICRVLS-----IAPSAYYATVARQKNPCVRSQKDKELCDDIRRVWND 58
Query 69 DAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGR 128
+ C+YG+ K+W L+R+G TV+ +MR G +GV + R P R
Sbjct 59 NF-------CVYGARKVWHQLKREGLDVARCTVERLMRRMGLKGVIRGKGVRTTRPDPQR 111
Query 129 GPGPR 133
P P+
Sbjct 112 -PCPQ 115
>gi|315657908|ref|ZP_07910786.1| transposase subunit B [Mobiluncus curtisii subsp. holmesii ATCC
35242]
gi|315491506|gb|EFU81119.1| transposase subunit B [Mobiluncus curtisii subsp. holmesii ATCC
35242]
Length=303
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/138 (34%), Positives = 61/138 (45%), Gaps = 27/138 (19%)
Query 7 LICAFGDKHKHTYGVTPICRALA--VHGVQIASRTYFADRAAAPSKRALWDTTITEILAG 64
++ A+ D +KH +GV PICR L + G I +R Y A + PS R++ D +
Sbjct 1 MLIAYIDGYKHQFGVEPICRTLNGYLEGGFITARGYRAAKRRLPSVRSMRDKVLV----- 55
Query 65 YYEPDAEGKR---PPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV-----PLA 116
AE KR C YG KMW + R G+R +MR G RGV PL
Sbjct 56 -----AEIKRIHTENYCAYGIRKMWHAMVRSGWRIGRDQTARLMRLAGVRGVVRGRKPLT 110
Query 117 AHITHHRTRPGRGPGPRP 134
TRP + RP
Sbjct 111 -------TRPAKMVDNRP 121
>gi|295836034|ref|ZP_06822967.1| transposase [Streptomyces sp. SPB74]
gi|197695116|gb|EDY42049.1| transposase [Streptomyces sp. SPB74]
Length=306
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/126 (35%), Positives = 59/126 (47%), Gaps = 15/126 (11%)
Query 9 CAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAAPSKRALWDTTITEILAGYYEP 68
A+ D++K T+GV PIC LA IA TY+A PS R+ D +TE + +
Sbjct 3 VAYIDQYKETFGVQPICDVLAETDAPIAPSTYYAAHNRPPSARSPRDGELTEDIRRIH-A 61
Query 69 DAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGR 128
D G +YG+ K+ A L R+G TV+ +MR G R V RTR R
Sbjct 62 DNYG------VYGARKVHAALVREGVEVARCTVERLMRQAGLREVI--------RTRSPR 107
Query 129 GPGPRP 134
P P
Sbjct 108 TTRPAP 113
>gi|329115411|ref|ZP_08244164.1| Transposase for insertion sequence element IS629 [Acetobacter
pomorum DM001]
gi|326695255|gb|EGE46943.1| Transposase for insertion sequence element IS629 [Acetobacter
pomorum DM001]
Length=294
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (31%), Positives = 59/125 (48%), Gaps = 15/125 (12%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFAD--RAAAPSKRALWDTTITEILAGYYEP 68
F D+H+ TYGV ICR L+ IA Y+A R P R+ D +++ + +
Sbjct 4 FIDEHRQTYGVGSICRVLS-----IAPSVYYATVARQKNPCVRSQKDKELSDDIRRVWND 58
Query 69 DAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGR 128
+ C+YG+ K+W +R+G TV+ +MR G +GV + R P R
Sbjct 59 NF-------CVYGARKVWHQFKREGLDVARCTVERLMRRMGLKGVIRGKGVRTTRPDPAR 111
Query 129 GPGPR 133
P P+
Sbjct 112 -PCPQ 115
>gi|85717600|ref|ZP_01048541.1| integrase, catalytic region [Nitrobacter sp. Nb-311A]
gi|85695565|gb|EAQ33482.1| integrase, catalytic region [Nitrobacter sp. Nb-311A]
Length=121
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/132 (32%), Positives = 58/132 (44%), Gaps = 20/132 (15%)
Query 8 ICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRA-----AAPSKRALWDTTITEIL 62
+ AF D H+ +GV PIC+ L+ IA TY A A A S RA D + +
Sbjct 1 MIAFIDDHRAAHGVEPICKVLS-----IAPSTYHAHVAKRRDPAKLSARARQDVILKIEV 55
Query 63 AGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHH 122
++ + +YG K+W L+R+GF TV +MR G GV +
Sbjct 56 RRVFDENFR-------VYGVRKIWRQLKREGFDIARCTVSRLMRTMGLHGVIRGKSV--- 105
Query 123 RTRPGRGPGPRP 134
RT G PG P
Sbjct 106 RTTIGDCPGSAP 117
>gi|334110761|ref|ZP_08485035.1| Integrase catalytic region [Methylomicrobium album BG8]
gi|333599141|gb|EGL03963.1| Integrase catalytic region [Methylomicrobium album BG8]
Length=300
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/111 (34%), Positives = 57/111 (52%), Gaps = 17/111 (15%)
Query 8 ICAFGDKHKHTYGVTPICRALAVHGVQIASRTYF--ADRAAAP---SKRALWDTTITEIL 62
+ AF D+H+ YGV PIC+ L IA TY+ A RAA P S RA D +++ +
Sbjct 1 MNAFIDEHREAYGVEPICKVLP-----IAPSTYYLHAARAANPELRSTRAKQDEALSQQI 55
Query 63 AGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGV 113
++ + YG+ K+W LQR+G TV+ +M+ G +G+
Sbjct 56 RRVWDESFQA-------YGARKVWWQLQREGLAVARCTVERLMQQMGLKGI 99
>gi|260577463|ref|ZP_05845415.1| integrase catalytic region [Rhodobacter sp. SW2]
gi|259020320|gb|EEW23664.1| integrase catalytic region [Rhodobacter sp. SW2]
Length=194
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/164 (31%), Positives = 75/164 (46%), Gaps = 31/164 (18%)
Query 8 ICAFGDKHKHTYGVTPICRALAVHGVQIASRTYFADRAAA-----PSKRALWDTTITEIL 62
+ AF ++H+ +GV P+CR L QIA TY+ RA S RA D ++ +
Sbjct 1 MTAFIEEHRGEFGVEPMCRIL-----QIAPSTYYDRRAIVRDPDRASARAKSDAALSVKI 55
Query 63 AGYYEPDAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHH 122
+ DA K LYG+ K+W L+RQG TV+ +MR+ G+RGV +
Sbjct 56 DAAW--DANRK-----LYGARKIWHVLRRQGEDADRCTVERLMRSLGFRGVVRGKKVIT- 107
Query 123 RTRPGRG-PGP-----------RPGGSAMAGFSNEPAGSGRLHL 154
T P P P RP ++ F+ P SG +++
Sbjct 108 -TNPDTSLPCPDDKVNRLFMADRPNKLWVSDFTYVPTWSGTVYV 150
>gi|329115407|ref|ZP_08244161.1| Transposase for insertion sequence element IS629 [Acetobacter
pomorum DM001]
gi|326695386|gb|EGE47073.1| Transposase for insertion sequence element IS629 [Acetobacter
pomorum DM001]
Length=296
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/125 (31%), Positives = 59/125 (48%), Gaps = 15/125 (12%)
Query 11 FGDKHKHTYGVTPICRALAVHGVQIASRTYFAD--RAAAPSKRALWDTTITEILAGYYEP 68
F D+H+ TYGV ICR L+ IA Y+A R P R+ D +++ + +
Sbjct 4 FIDEHRQTYGVGSICRVLS-----IAPSVYYATVARQKNPCVRSQKDKELSDDIRRVWND 58
Query 69 DAEGKRPPECLYGSLKMWAHLQRQGFRWPSATVKTIMRANGWRGVPLAAHITHHRTRPGR 128
+ C+YG+ K+W +R+G TV+ +MR G +GV + R P R
Sbjct 59 NF-------CVYGARKVWHQFKREGLDVARCTVERLMRRMGLKGVIRGKGVRTTRPDPAR 111
Query 129 GPGPR 133
P P+
Sbjct 112 -PCPQ 115
Lambda K H
0.324 0.138 0.450
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 217214446392
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40