BLAST Search Results


BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2087

Length=76
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|31793270|ref|NP_855763.1|  hypothetical protein Mb2114 [Mycoba...   157    6e-37
gi|298525586|ref|ZP_07012995.1|  conserved hypothetical protein [...   155    1e-36
gi|336458101|gb|EGO37085.1|  transposase [Mycobacterium avium sub...  69.7    1e-10
gi|41408254|ref|NP_961090.1|  hypothetical protein MAP2156 [Mycob...  69.7    1e-10
gi|25029175|ref|NP_739229.1|  putative transposase [Corynebacteri...  68.9    2e-10
gi|108802542|ref|YP_642738.1|  integrase catalytic subunit [Mycob...  68.6    3e-10
gi|315445694|ref|YP_004078573.1|  transposase [Mycobacterium sp. ...  66.2    2e-09
gi|315445647|ref|YP_004078526.1|  transposase [Mycobacterium sp. ...  64.3    6e-09
gi|325963579|ref|YP_004241485.1|  integrase family protein [Arthr...  63.5    1e-08
gi|119716261|ref|YP_923226.1|  hypothetical protein Noca_2029 [No...  62.0    3e-08
gi|119716978|ref|YP_923943.1|  integrase catalytic subunit [Nocar...  62.0    3e-08
gi|119715828|ref|YP_922793.1|  integrase catalytic subunit [Nocar...  62.0    3e-08
gi|297626836|ref|YP_003688599.1|  transposase [Propionibacterium ...  60.8    7e-08
gi|40445357|ref|NP_954817.1|  transposase [Gordonia westfalica] >...  59.3    2e-07
gi|343926951|ref|ZP_08766443.1|  putative transposase [Gordonia a...  58.9    2e-07
gi|343924851|ref|ZP_08764390.1|  putative transposase [Gordonia a...  58.9    2e-07
gi|163839107|ref|YP_001623512.1|  ISRs2 transposase [Renibacteriu...  58.5    3e-07
gi|163839079|ref|YP_001623484.1|  ISRs2 transposase [Renibacteriu...  58.5    3e-07
gi|163839277|ref|YP_001623682.1|  ISRs2 transposase [Renibacteriu...  57.8    5e-07
gi|83955661|ref|ZP_00964241.1|  integrase, catalytic region [Sulf...  57.8    5e-07
gi|163798254|ref|ZP_02192185.1|  integrase, catalytic region [alp...  57.4    7e-07
gi|77454859|ref|YP_345727.1|  putative transposase [Rhodococcus e...  56.6    1e-06
gi|315445639|ref|YP_004078518.1|  transposase [Mycobacterium sp. ...  55.8    2e-06
gi|297625305|ref|YP_003687068.1|  transposase [Propionibacterium ...  55.5    2e-06
gi|163841134|ref|YP_001625539.1|  ISRs2 transposase [Renibacteriu...  55.5    3e-06
gi|159046245|ref|YP_001541917.1|  integrase catalytic region [Din...  55.1    3e-06
gi|145294194|ref|YP_001137015.1|  hypothetical protein cgR_0151 [...  55.1    4e-06
gi|28558884|ref|NP_788144.1|  putative transposase [Ruegeria sp. ...  55.1    4e-06
gi|145221197|ref|YP_001131875.1|  integrase catalytic subunit [My...  54.7    4e-06
gi|28558868|ref|NP_788128.1|  putative transposase [Ruegeria sp. ...  54.7    4e-06
gi|108797904|ref|YP_638101.1|  integrase catalytic subunit [Mycob...  54.7    5e-06
gi|296166207|ref|ZP_06848648.1|  integrase catalytic subunit [Myc...  54.3    5e-06
gi|149914013|ref|ZP_01902545.1|  integrase, catalytic region [Ros...  54.3    6e-06
gi|269957675|ref|YP_003327464.1|  Integrase catalytic region [Xyl...  53.9    8e-06
gi|118467059|ref|YP_880696.1|  transposase [Mycobacterium avium 1...  53.9    8e-06
gi|118462709|ref|YP_884155.1|  transposase [Mycobacterium avium 1...  53.9    9e-06
gi|315445641|ref|YP_004078520.1|  transposase [Mycobacterium sp. ...  53.5    1e-05
gi|163795382|ref|ZP_02189349.1|  integrase, catalytic region [alp...  53.5    1e-05
gi|315441898|ref|YP_004074777.1|  transposase [Mycobacterium sp. ...  53.1    1e-05
gi|118462685|ref|YP_880715.1|  transposase [Mycobacterium avium 1...  53.1    1e-05
gi|5524330|gb|AAD44223.1|AF143772_29  IS1601-D [Mycobacterium avium]  52.4    2e-05
gi|4572557|gb|AAC71699.2|  unknown [Mycobacterium avium]              52.4    2e-05
gi|118462766|ref|YP_881428.1|  transposase [Mycobacterium avium 1...  52.0    3e-05
gi|118465607|ref|YP_882422.1|  transposase [Mycobacterium avium 1...  51.6    3e-05
gi|118462572|ref|YP_881888.1|  transposase [Mycobacterium avium 1...  51.6    4e-05
gi|15619023|gb|AAL02532.1|AF232829_6  putative transposase subuni...  51.6    4e-05
gi|296164128|ref|ZP_06846744.1|  transposase subunit B [Mycobacte...  51.2    5e-05
gi|284989769|ref|YP_003408323.1|  Integrase catalytic domain-cont...  51.2    5e-05
gi|288961265|ref|YP_003451604.1|  transposase [Azospirillum sp. B...  50.8    6e-05
gi|25027799|ref|NP_737853.1|  putative transposase [Corynebacteri...  50.8    7e-05


>gi|31793270|ref|NP_855763.1| hypothetical protein Mb2114 [Mycobacterium bovis AF2122/97]
 gi|57116942|ref|NP_216603.2| hypothetical protein Rv2087 [Mycobacterium tuberculosis H37Rv]
 gi|121637972|ref|YP_978196.1| hypothetical protein BCG_2107 [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 40 more sequence titles
 gi|167966802|ref|ZP_02549079.1| hypothetical protein MtubH3_01525 [Mycobacterium tuberculosis 
H37Ra]
 gi|224990466|ref|YP_002645153.1| hypothetical protein JTY_2101 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253798854|ref|YP_003031855.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|254364900|ref|ZP_04980946.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|254551120|ref|ZP_05141567.1| transposase [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|289443593|ref|ZP_06433337.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289447708|ref|ZP_06437452.1| integrase catalytic subunit [Mycobacterium tuberculosis CPHL_A]
 gi|289570200|ref|ZP_06450427.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289574768|ref|ZP_06454995.1| integrase catalytic subunit [Mycobacterium tuberculosis K85]
 gi|289762249|ref|ZP_06521627.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|294997031|ref|ZP_06802722.1| transposase [Mycobacterium tuberculosis 210]
 gi|297634668|ref|ZP_06952448.1| transposase [Mycobacterium tuberculosis KZN 4207]
 gi|297731656|ref|ZP_06960774.1| transposase [Mycobacterium tuberculosis KZN R506]
 gi|306803822|ref|ZP_07440490.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|306808395|ref|ZP_07445063.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|306968218|ref|ZP_07480879.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|306972442|ref|ZP_07485103.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|313658991|ref|ZP_07815871.1| transposase [Mycobacterium tuberculosis KZN V2475]
 gi|339632122|ref|YP_004723764.1| hypothetical protein MAF_21010 [Mycobacterium africanum GM041182]
 gi|50403663|sp|Q10696.2|Y2087_MYCTU RecName: Full=Uncharacterized protein Rv2087/MT2148
 gi|31618862|emb|CAD96967.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97]
 gi|38490307|emb|CAA98199.2| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121493620|emb|CAL72095.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. 
Pasteur 1173P2]
 gi|134150414|gb|EBA42459.1| conserved hypothetical protein [Mycobacterium tuberculosis str. 
Haarlem]
 gi|224773579|dbj|BAH26385.1| hypothetical protein JTY_2101 [Mycobacterium bovis BCG str. Tokyo 
172]
 gi|253320357|gb|ACT24960.1| transposase [Mycobacterium tuberculosis KZN 1435]
 gi|289416512|gb|EFD13752.1| conserved hypothetical protein [Mycobacterium tuberculosis T46]
 gi|289420666|gb|EFD17867.1| integrase catalytic subunit [Mycobacterium tuberculosis CPHL_A]
 gi|289539199|gb|EFD43777.1| integrase catalytic subunit [Mycobacterium tuberculosis K85]
 gi|289543954|gb|EFD47602.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
 gi|289709755|gb|EFD73771.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 
1503]
 gi|308345265|gb|EFP34116.1| transposase [Mycobacterium tuberculosis SUMu007]
 gi|308349567|gb|EFP38418.1| transposase [Mycobacterium tuberculosis SUMu008]
 gi|308354196|gb|EFP43047.1| transposase [Mycobacterium tuberculosis SUMu009]
 gi|308358148|gb|EFP46999.1| transposase [Mycobacterium tuberculosis SUMu010]
 gi|323719386|gb|EGB28525.1| hypothetical protein TMMG_01365 [Mycobacterium tuberculosis CDC1551A]
 gi|326903701|gb|EGE50634.1| hypothetical protein TBPG_01582 [Mycobacterium tuberculosis W-148]
 gi|339331478|emb|CCC27171.1| conserved hypothetical protein [Mycobacterium africanum GM041182]
 gi|341602010|emb|CCC64684.1| conserved hypothetical protein [Mycobacterium bovis BCG str. 
Moreau RDJ]
 gi|344219914|gb|AEN00545.1| hypothetical protein MTCTRI2_2126 [Mycobacterium tuberculosis 
CTRI-2]
Length=76

 Score =  157 bits (396),  Expect = 6e-37, Method: Compositional matrix adjust.
 Identities = 76/76 (100%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   MLAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHT  60
           MLAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHT
Sbjct  1   MLAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHT  60

Query  61  CHTQQGVRIPGRLQPA  76
           CHTQQGVRIPGRLQPA
Sbjct  61  CHTQQGVRIPGRLQPA  76


>gi|298525586|ref|ZP_07012995.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
 gi|298495380|gb|EFI30674.1| conserved hypothetical protein [Mycobacterium tuberculosis 94_M4241A]
Length=76

 Score =  155 bits (393),  Expect = 1e-36, Method: Compositional matrix adjust.
 Identities = 75/76 (99%), Positives = 76/76 (100%), Gaps = 0/76 (0%)

Query  1   MLAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHT  60
           MLAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLED+ASAWVEHT
Sbjct  1   MLAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDMASAWVEHT  60

Query  61  CHTQQGVRIPGRLQPA  76
           CHTQQGVRIPGRLQPA
Sbjct  61  CHTQQGVRIPGRLQPA  76


>gi|336458101|gb|EGO37085.1| transposase [Mycobacterium avium subsp. paratuberculosis S397]
Length=317

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 38/75 (51%), Positives = 49/75 (66%), Gaps = 2/75 (2%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHG-SPFRSGPIRTLADLEDIASAWVEHT  60
            L+GL PSIG VGDA DNAL ETT G ++TE     SPFR GP+  LAD+E + + WV H 
Sbjct  224  LSGLVPSIGTVGDAFDNALAETTIGLYKTEAVRADSPFRRGPLNRLADVEMLTADWV-HW  282

Query  61   CHTQQGVRIPGRLQP  75
             +T + +   GR+ P
Sbjct  283  YNTDRLMHRLGRIPP  297


>gi|41408254|ref|NP_961090.1| hypothetical protein MAP2156 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396609|gb|AAS04473.1| hypothetical protein MAP_2156 [Mycobacterium avium subsp. paratuberculosis 
K-10]
Length=320

 Score = 69.7 bits (169),  Expect = 1e-10, Method: Compositional matrix adjust.
 Identities = 38/75 (51%), Positives = 49/75 (66%), Gaps = 2/75 (2%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHG-SPFRSGPIRTLADLEDIASAWVEHT  60
            L+GL PSIG VGDA DNAL ETT G ++TE     SPFR GP+  LAD+E + + WV H 
Sbjct  227  LSGLVPSIGTVGDAFDNALAETTIGLYKTEAVRADSPFRRGPLNRLADVEMLTADWV-HW  285

Query  61   CHTQQGVRIPGRLQP  75
             +T + +   GR+ P
Sbjct  286  YNTDRLMHRLGRIPP  300


>gi|25029175|ref|NP_739229.1| putative transposase [Corynebacterium efficiens YS-314]
 gi|259505829|ref|ZP_05748731.1| transposase [Corynebacterium efficiens YS-314]
 gi|23494463|dbj|BAC19429.1| putative transposase [Corynebacterium efficiens YS-314]
 gi|259166617|gb|EEW51171.1| transposase [Corynebacterium efficiens YS-314]
Length=284

 Score = 68.9 bits (167),  Expect = 2e-10, Method: Compositional matrix adjust.
 Identities = 31/57 (55%), Positives = 40/57 (71%), Gaps = 0/57 (0%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            L G+ PSIG VGDA DNAL +T +G ++TEC   + F SGP RTLAD+E   + WV+
Sbjct  227  LEGIAPSIGTVGDAFDNALMKTVSGLYKTECIRTTVFHSGPFRTLADVEFATAGWVD  283


>gi|108802542|ref|YP_642738.1| integrase catalytic subunit [Mycobacterium sp. MCS]
 gi|108802547|ref|YP_642743.1| integrase catalytic subunit [Mycobacterium sp. MCS]
 gi|119855043|ref|YP_935648.1| integrase catalytic subunit [Mycobacterium sp. KMS]
 gi|108772961|gb|ABG11682.1| Integrase, catalytic region [Mycobacterium sp. MCS]
 gi|108772966|gb|ABG11687.1| Integrase, catalytic region [Mycobacterium sp. MCS]
 gi|119697761|gb|ABL94833.1| Integrase, catalytic region [Mycobacterium sp. KMS]
Length=304

 Score = 68.6 bits (166),  Expect = 3e-10, Method: Compositional matrix adjust.
 Identities = 36/76 (48%), Positives = 49/76 (65%), Gaps = 2/76 (2%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHG-SPFRSGPIRTLADLEDIASAWVEHT  60
            L+G+RPS+G VGDA DNAL ETT G ++ EC    SPFR GP+ T+ D+E I + +V   
Sbjct  206  LSGIRPSVGSVGDAFDNALAETTIGLYKNECVRADSPFRRGPLNTVGDVEYITADYVAWY  265

Query  61   CHTQQGVRIPGRLQPA  76
               +   R+ GR+ PA
Sbjct  266  NQQRLMHRL-GRIPPA  280


>gi|315445694|ref|YP_004078573.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263997|gb|ADU00739.1| transposase [Mycobacterium sp. Spyr1]
Length=300

 Score = 66.2 bits (160),  Expect = 2e-09, Method: Compositional matrix adjust.
 Identities = 37/75 (50%), Positives = 48/75 (64%), Gaps = 2/75 (2%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSH-GSPFRSGPIRTLADLEDIASAWVEHT  60
            L+GL  SIG VGDA DNAL ETT G ++TE     SPFR GP+  LAD+E + + WV H 
Sbjct  207  LSGLVASIGTVGDAFDNALAETTIGLYKTEAVRDDSPFRRGPLHRLADVELLTAEWV-HW  265

Query  61   CHTQQGVRIPGRLQP  75
             +T + +   GR+ P
Sbjct  266  YNTDRLMHRLGRIPP  280


>gi|315445647|ref|YP_004078526.1| transposase [Mycobacterium sp. Spyr1]
 gi|315446744|ref|YP_004079623.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263950|gb|ADU00692.1| transposase [Mycobacterium sp. Spyr1]
 gi|315265047|gb|ADU01789.1| transposase [Mycobacterium sp. Spyr1]
Length=300

 Score = 64.3 bits (155),  Expect = 6e-09, Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 47/75 (63%), Gaps = 2/75 (2%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSH-GSPFRSGPIRTLADLEDIASAWVEHT  60
            L+GL  SIG VGDA DNAL ETT G ++TE     SPFR GP+  L D+E + + WV H 
Sbjct  207  LSGLVASIGTVGDAFDNALAETTIGLYKTEAVRDDSPFRRGPLHRLTDVELLTAEWV-HW  265

Query  61   CHTQQGVRIPGRLQP  75
             +T + +   GR+ P
Sbjct  266  YNTDRLMHRLGRIPP  280


>gi|325963579|ref|YP_004241485.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469666|gb|ADX73351.1| integrase family protein [Arthrobacter phenanthrenivorans Sphe3]
Length=98

 Score = 63.5 bits (153),  Expect = 1e-08, Method: Compositional matrix adjust.
 Identities = 28/61 (46%), Positives = 38/61 (63%), Gaps = 0/61 (0%)

Query  2   LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTC  61
           L G+ PSIG +GDA DNAL ET  G ++ EC   + F  GP +T+AD+E   + WV+   
Sbjct  8   LDGIAPSIGSIGDAYDNALMETINGIYKAECVRTTIFHDGPYKTIADVEYATAGWVDWYN  67

Query  62  H  62
           H
Sbjct  68  H  68


>gi|119716261|ref|YP_923226.1| hypothetical protein Noca_2029 [Nocardioides sp. JS614]
 gi|119536922|gb|ABL81539.1| hypothetical protein Noca_2029 [Nocardioides sp. JS614]
Length=112

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 27/55 (50%), Positives = 36/55 (66%), Gaps = 0/55 (0%)

Query  4   GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
           G+RPSIG V DA DNAL E   G ++TEC   + F +GP RT+ D+E   + WV+
Sbjct  24  GIRPSIGTVADAYDNALMECVIGLYKTECIRTTVFHAGPYRTIGDVEYATAGWVD  78


>gi|119716978|ref|YP_923943.1| integrase catalytic subunit [Nocardioides sp. JS614]
 gi|119537639|gb|ABL82256.1| Integrase, catalytic region [Nocardioides sp. JS614]
Length=253

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE----H  59
            G+RPSIG V DA DNAL E   G ++TEC   + F +GP RT+ D+E   + WV+     
Sbjct  165  GIRPSIGTVADAYDNALMECVIGLYKTECIRTTVFHAGPYRTIGDVEYATAGWVDWYNNR  224

Query  60   TCHTQQGVRIPGRLQPA  76
              H   G+  P   + A
Sbjct  225  RLHGSLGMMTPVEFEQA  241


>gi|119715828|ref|YP_922793.1| integrase catalytic subunit [Nocardioides sp. JS614]
 gi|119717787|ref|YP_924752.1| integrase catalytic subunit [Nocardioides sp. JS614]
 gi|119536489|gb|ABL81106.1| Integrase, catalytic region [Nocardioides sp. JS614]
 gi|119538448|gb|ABL83065.1| Integrase, catalytic region [Nocardioides sp. JS614]
Length=250

 Score = 62.0 bits (149),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 31/77 (41%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE----H  59
            G+RPSIG V DA DNAL E   G ++TEC   + F +GP RT+ D+E   + WV+     
Sbjct  162  GIRPSIGTVADAYDNALMECVIGLYKTECIRTTVFHAGPYRTIGDVEYATAGWVDWYNNR  221

Query  60   TCHTQQGVRIPGRLQPA  76
              H   G+  P   + A
Sbjct  222  RLHGSLGMMTPVEFEQA  238


>gi|297626836|ref|YP_003688599.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296922601|emb|CBL57178.1| transposase (fragment) [Propionibacterium freudenreichii subsp. 
shermanii CIRM-BIA1]
Length=98

 Score = 60.8 bits (146),  Expect = 7e-08, Method: Compositional matrix adjust.
 Identities = 27/61 (45%), Positives = 37/61 (61%), Gaps = 0/61 (0%)

Query  2   LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTC  61
           L  + PSIG +GDA DNAL ET  G ++ EC   + F  GP +T+AD+E   + WV+   
Sbjct  8   LEQIAPSIGSIGDAYDNALMETINGVYKAECVRTTIFHDGPYKTIADVEFATAGWVDWYN  67

Query  62  H  62
           H
Sbjct  68  H  68


>gi|40445357|ref|NP_954817.1| transposase [Gordonia westfalica]
 gi|40217387|emb|CAE09138.1| putative transposase [Gordonia westfalica]
Length=330

 Score = 59.3 bits (142),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 27/57 (48%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            L  +  SIG VGDA DNAL E+  G ++TEC   + F SGP RT++D+E   + WV+
Sbjct  232  LEDIAASIGSVGDAYDNALAESVNGLYKTECIRTTIFHSGPYRTISDVEFATAGWVD  288


>gi|343926951|ref|ZP_08766443.1| putative transposase [Gordonia alkanivorans NBRC 16433]
 gi|343763138|dbj|GAA13369.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=125

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 37/57 (65%), Gaps = 0/57 (0%)

Query  2   LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
           L  +  SIG VGDA DNAL E+  G ++TEC   + F SGP +T++D+E   + WV+
Sbjct  27  LEDIAASIGTVGDAYDNALAESVNGLYKTECIRTTIFHSGPYKTVSDVEFATAGWVD  83


>gi|343924851|ref|ZP_08764390.1| putative transposase [Gordonia alkanivorans NBRC 16433]
 gi|343765358|dbj|GAA11316.1| putative transposase [Gordonia alkanivorans NBRC 16433]
Length=318

 Score = 58.9 bits (141),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 30/59 (51%), Positives = 38/59 (65%), Gaps = 1/59 (1%)

Query  1    MLAGLRPSIGIVGDALDNALCETTTGPHRTE-CSHGSPFRSGPIRTLADLEDIASAWVE  58
            +L G+  SIG VGDA DNAL E+T G  +TE  S  SPF  GPI+T+ D+E     WV+
Sbjct  223  VLEGIAASIGSVGDAYDNALAESTIGLFKTEAVSKSSPFLQGPIKTIDDIEFATMEWVD  281


>gi|163839107|ref|YP_001623512.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162952583|gb|ABY22098.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
Length=357

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 40/58 (69%), Gaps = 1/58 (1%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTE-CSHGSPFRSGPIRTLADLEDIASAWVE  58
            L G+  SIG VGDA DNAL E+T G  +TE     SPFR+GP++T+ ++E  + AW++
Sbjct  262  LEGIAASIGSVGDAYDNALAESTIGLFKTEAVREDSPFRNGPLKTIDEVEWASLAWID  319


>gi|163839079|ref|YP_001623484.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|163839732|ref|YP_001624137.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|163839858|ref|YP_001624263.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 11 more sequence titles
 gi|163841615|ref|YP_001626020.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|163841795|ref|YP_001626200.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|163842141|ref|YP_001626546.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|163842230|ref|YP_001626635.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162952555|gb|ABY22070.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162953208|gb|ABY22723.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162953334|gb|ABY22849.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162955091|gb|ABY24606.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162955271|gb|ABY24786.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162955617|gb|ABY25132.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162955706|gb|ABY25221.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
Length=357

 Score = 58.5 bits (140),  Expect = 3e-07, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 40/58 (69%), Gaps = 1/58 (1%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTE-CSHGSPFRSGPIRTLADLEDIASAWVE  58
            L G+  SIG VGDA DNAL E+T G  +TE     SPFR+GP++T+ ++E  + AW++
Sbjct  262  LEGIAASIGSVGDAYDNALAESTIGLFKTEAVREDSPFRNGPLKTIDEVEWASLAWID  319


>gi|163839277|ref|YP_001623682.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162952753|gb|ABY22268.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
Length=139

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 28/58 (49%), Positives = 40/58 (69%), Gaps = 1/58 (1%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTEC-SHGSPFRSGPIRTLADLEDIASAWVE  58
            L G+  SIG VGDA DNAL E+T G  +TE     SPFR+GP++T+ ++E  + AW++
Sbjct  44   LEGIAASIGSVGDAYDNALAESTIGLFKTEAVREDSPFRNGPLKTIDEVEWASLAWID  101


>gi|83955661|ref|ZP_00964241.1| integrase, catalytic region [Sulfitobacter sp. NAS-14.1]
 gi|83839955|gb|EAP79131.1| integrase, catalytic region [Sulfitobacter sp. NAS-14.1]
Length=89

 Score = 57.8 bits (138),  Expect = 5e-07, Method: Compositional matrix adjust.
 Identities = 28/60 (47%), Positives = 35/60 (59%), Gaps = 4/60 (6%)

Query  3   AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
           AG+ PS+G VGD+ DNAL ET  G ++TE  H    R GP R + DLE     WV+   H
Sbjct  4   AGIEPSVGSVGDSYDNALAETINGLYKTELVH----RQGPWRNMQDLEMATLGWVDWFNH  59


>gi|163798254|ref|ZP_02192185.1| integrase, catalytic region [alpha proteobacterium BAL199]
 gi|159176454|gb|EDP61038.1| integrase, catalytic region [alpha proteobacterium BAL199]
Length=107

 Score = 57.4 bits (137),  Expect = 7e-07, Method: Compositional matrix adjust.
 Identities = 29/60 (49%), Positives = 36/60 (60%), Gaps = 4/60 (6%)

Query  3   AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
           AGL PS+G VGD+ DNAL E+  G ++TE  H    R GP RTL D+E     WV+   H
Sbjct  22  AGLEPSVGSVGDSYDNALAESVIGLYKTEVIH----RRGPWRTLEDVEFATLDWVDWFNH  77


>gi|77454859|ref|YP_345727.1| putative transposase [Rhodococcus erythropolis PR4]
 gi|77019859|dbj|BAE46235.1| putative transposase [Rhodococcus erythropolis PR4]
Length=330

 Score = 56.6 bits (135),  Expect = 1e-06, Method: Compositional matrix adjust.
 Identities = 26/57 (46%), Positives = 35/57 (62%), Gaps = 0/57 (0%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            L  +  SIG VGDA DNAL E+  G ++TEC   + F SG  +T+ D+E   + WVE
Sbjct  232  LENIAASIGSVGDAYDNALVESANGLYKTECIRTTIFHSGSYKTVTDVEFATAGWVE  288


>gi|315445639|ref|YP_004078518.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263942|gb|ADU00684.1| transposase [Mycobacterium sp. Spyr1]
Length=323

 Score = 55.8 bits (133),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 25/55 (46%), Positives = 33/55 (60%), Gaps = 0/55 (0%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            G+ PSIG V DA DNAL E   G ++TEC   + F  GP R + D+E   + WV+
Sbjct  235  GILPSIGSVADAYDNALMECVIGLYKTECIRTTIFHGGPYRNIGDVEYATAGWVD  289


>gi|297625305|ref|YP_003687068.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|297625328|ref|YP_003687091.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|297625765|ref|YP_003687528.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 13 more sequence titles
 gi|297626472|ref|YP_003688235.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|297627084|ref|YP_003688847.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|297627252|ref|YP_003689015.1| transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|295808567|emb|CBI83396.1| transposase B [Propionibacterium freudenreichii subsp. shermanii]
 gi|295808571|emb|CBI83399.1| transposase B [Propionibacterium freudenreichii subsp. shermanii]
 gi|295808575|emb|CBI83402.1| transposase B [Propionibacterium freudenreichii subsp. shermanii]
 gi|295808580|emb|CBI83406.1| transposase B [Propionibacterium freudenreichii subsp. shermanii]
 gi|296921070|emb|CBL55611.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296921093|emb|CBL55638.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296921530|emb|CBL56084.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296922237|emb|CBL56809.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296922849|emb|CBL57429.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
 gi|296923017|emb|CBL57600.1| Transposase [Propionibacterium freudenreichii subsp. shermanii 
CIRM-BIA1]
Length=295

 Score = 55.5 bits (132),  Expect = 2e-06, Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 38/62 (62%), Gaps = 2/62 (3%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCHT  63
            G  PSIG VGD+ DNAL ET  G ++ E   G P RSGP +T+ DLE     WV H  +T
Sbjct  205  GATPSIGTVGDSYDNALAETVNGYYKAELVRG-PTRSGPWKTVEDLELATLGWV-HWHNT  262

Query  64   QQ  65
            Q+
Sbjct  263  QR  264


>gi|163841134|ref|YP_001625539.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
 gi|162954610|gb|ABY24125.1| ISRs2 transposase [Renibacterium salmoninarum ATCC 33209]
Length=357

 Score = 55.5 bits (132),  Expect = 3e-06, Method: Compositional matrix adjust.
 Identities = 27/58 (47%), Positives = 39/58 (68%), Gaps = 1/58 (1%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTE-CSHGSPFRSGPIRTLADLEDIASAWVE  58
            L G+  SIG VGDA DNAL E+T G  +TE     SPFR+GP++T+ ++   + AW++
Sbjct  262  LEGIAASIGSVGDAYDNALAESTIGLFKTEAVREDSPFRNGPLKTIDEVGWASLAWID  319


>gi|159046245|ref|YP_001541917.1| integrase catalytic region [Dinoroseobacter shibae DFL 12]
 gi|159046275|ref|YP_001541947.1| integrase catalytic region [Dinoroseobacter shibae DFL 12]
 gi|157914004|gb|ABV95436.1| integrase catalytic region [Dinoroseobacter shibae DFL 12]
 gi|157914034|gb|ABV95466.1| integrase [Dinoroseobacter shibae DFL 12]
Length=301

 Score = 55.1 bits (131),  Expect = 3e-06, Method: Composition-based stats.
 Identities = 27/56 (49%), Positives = 34/56 (61%), Gaps = 4/56 (7%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            AG+ PS+G VGD+ DNAL ET  G ++TE  H    R GP R + DLE     WV+
Sbjct  216  AGIEPSVGSVGDSYDNALAETINGLYKTELVH----RQGPWRNMQDLEMATLGWVD  267


>gi|145294194|ref|YP_001137015.1| hypothetical protein cgR_0151 [Corynebacterium glutamicum R]
 gi|227548607|ref|ZP_03978656.1| transposase [Corynebacterium lipophiloflavum DSM 44291]
 gi|57158008|dbj|BAD83982.1| putative transposase [Corynebacterium glutamicum]
 gi|140844114|dbj|BAF53113.1| hypothetical protein [Corynebacterium glutamicum R]
 gi|227079330|gb|EEI17293.1| transposase [Corynebacterium lipophiloflavum DSM 44291]
Length=106

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 29/77 (38%), Positives = 42/77 (55%), Gaps = 4/77 (5%)

Query  2   LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE---  58
           L G+ PSIG VGDA DNAL E++ G  +TEC     F +  + ++ D+E    AWV+   
Sbjct  9   LQGITPSIGSVGDAYDNALMESSNGLDKTECIGSRIFTAQNLESIVDVELATMAWVQWHN  68

Query  59  -HTCHTQQGVRIPGRLQ  74
            H  H+  G+  P   +
Sbjct  69  HHRLHSTLGMVPPAEYE  85


>gi|28558884|ref|NP_788144.1| putative transposase [Ruegeria sp. PR1b]
 gi|22726435|gb|AAN05230.1| RC157 [Ruegeria sp. PR1b]
Length=301

 Score = 55.1 bits (131),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 28/60 (47%), Positives = 35/60 (59%), Gaps = 4/60 (6%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
            AG+ PS+G VGD+ DNAL ET  G ++TE  H    R GP R + DLE     WV+   H
Sbjct  216  AGIEPSVGSVGDSYDNALAETINGLYKTELVH----RQGPWRNMQDLEMATLGWVDWFNH  271


>gi|145221197|ref|YP_001131875.1| integrase catalytic subunit [Mycobacterium gilvum PYR-GCK]
 gi|145213683|gb|ABP43087.1| integrase, catalytic region [Mycobacterium gilvum PYR-GCK]
Length=126

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Compositional matrix adjust.
 Identities = 26/51 (51%), Positives = 34/51 (67%), Gaps = 1/51 (1%)

Query  7   PSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
           PSIG VGD+ DNAL ET  G ++ E  +G P RSGP +T+ D+E    +WV
Sbjct  39  PSIGTVGDSFDNALAETVNGYYKAELIYG-PARSGPWKTVEDVELATLSWV  88


>gi|28558868|ref|NP_788128.1| putative transposase [Ruegeria sp. PR1b]
 gi|22726419|gb|AAN05214.1| RC141 [Ruegeria sp. PR1b]
Length=301

 Score = 54.7 bits (130),  Expect = 4e-06, Method: Composition-based stats.
 Identities = 28/60 (47%), Positives = 35/60 (59%), Gaps = 4/60 (6%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
            AG+ PS+G VGD+ DNAL ET  G ++TE  H    R GP R + DLE     WV+   H
Sbjct  216  AGIEPSVGSVGDSYDNALAETINGLYKTELVH----RQGPWRNMQDLEMATLGWVDWFNH  271


>gi|108797904|ref|YP_638101.1| integrase catalytic subunit [Mycobacterium sp. MCS]
 gi|108799561|ref|YP_639758.1| integrase catalytic subunit [Mycobacterium sp. MCS]
 gi|119866999|ref|YP_936951.1| integrase catalytic subunit [Mycobacterium sp. KMS]
 7 more sequence titles
 gi|119867533|ref|YP_937485.1| integrase catalytic subunit [Mycobacterium sp. KMS]
 gi|119868672|ref|YP_938624.1| integrase catalytic subunit [Mycobacterium sp. KMS]
 gi|108768323|gb|ABG07045.1| Integrase, catalytic region [Mycobacterium sp. MCS]
 gi|108769980|gb|ABG08702.1| Integrase, catalytic region [Mycobacterium sp. MCS]
 gi|119693088|gb|ABL90161.1| Integrase, catalytic region [Mycobacterium sp. KMS]
 gi|119693622|gb|ABL90695.1| Integrase, catalytic region [Mycobacterium sp. KMS]
 gi|119694761|gb|ABL91834.1| Integrase, catalytic region [Mycobacterium sp. KMS]
Length=279

 Score = 54.7 bits (130),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 26/51 (51%), Positives = 34/51 (67%), Gaps = 1/51 (1%)

Query  7    PSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            PSIG VGD+ DNAL ET  G ++ E  +G P RSGP +T+ D+E    +WV
Sbjct  192  PSIGTVGDSFDNALAETVNGYYKAELIYG-PARSGPWKTVEDVELATLSWV  241


>gi|296166207|ref|ZP_06848648.1| integrase catalytic subunit [Mycobacterium parascrofulaceum ATCC 
BAA-614]
 gi|295898455|gb|EFG78020.1| integrase catalytic subunit [Mycobacterium parascrofulaceum ATCC 
BAA-614]
Length=281

 Score = 54.3 bits (129),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 35/54 (65%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG +GD+ DNAL ET  G ++ E  +G P RSGP++T+ D+E     WV
Sbjct  191  GAVPSIGSIGDSFDNALAETVNGYYKAELIYG-PARSGPLKTVEDVELATLGWV  243


>gi|149914013|ref|ZP_01902545.1| integrase, catalytic region [Roseobacter sp. AzwK-3b]
 gi|149812297|gb|EDM72128.1| integrase, catalytic region [Roseobacter sp. AzwK-3b]
Length=154

 Score = 54.3 bits (129),  Expect = 6e-06, Method: Compositional matrix adjust.
 Identities = 26/55 (48%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            G+ PS+G VGD+ DNAL ET  G ++TE  H    R GP R + DLE     WV+
Sbjct  70   GIEPSVGSVGDSYDNALAETINGLYKTELVH----RQGPWRNMQDLEMATLGWVD  120


>gi|269957675|ref|YP_003327464.1| Integrase catalytic region [Xylanimonas cellulosilytica DSM 15894]
 gi|269958070|ref|YP_003327859.1| Integrase catalytic region [Xylanimonas cellulosilytica DSM 15894]
 gi|269306356|gb|ACZ31906.1| Integrase catalytic region [Xylanimonas cellulosilytica DSM 15894]
 gi|269306751|gb|ACZ32301.1| Integrase catalytic region [Xylanimonas cellulosilytica DSM 15894]
Length=312

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 29/60 (49%), Positives = 35/60 (59%), Gaps = 3/60 (5%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
            AG+  SIG VGDALDNAL E+T G  +TE      F +GP  T  D+E   +AWV    H
Sbjct  224  AGITGSIGTVGDALDNALMESTIGLFKTEI---HAFATGPFTTWRDVEKATAAWVHWFNH  280


>gi|118467059|ref|YP_880696.1| transposase [Mycobacterium avium 104]
 gi|118168346|gb|ABK69243.1| transposase [Mycobacterium avium 104]
Length=279

 Score = 53.9 bits (128),  Expect = 8e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 35/54 (65%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P R+GP +T+ D+E    +WV
Sbjct  189  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARTGPWKTVEDVELATLSWV  241


>gi|118462709|ref|YP_884155.1| transposase [Mycobacterium avium 104]
 gi|118163996|gb|ABK64893.1| transposase [Mycobacterium avium 104]
Length=279

 Score = 53.9 bits (128),  Expect = 9e-06, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 35/54 (65%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P R+GP +T+ D+E    +WV
Sbjct  189  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARTGPWKTVEDVELATLSWV  241


>gi|315445641|ref|YP_004078520.1| transposase [Mycobacterium sp. Spyr1]
 gi|315263944|gb|ADU00686.1| transposase [Mycobacterium sp. Spyr1]
Length=255

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/48 (59%), Positives = 32/48 (67%), Gaps = 1/48 (2%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSH-GSPFRSGPIRTLAD  48
            L+GL  SIG VGDA DNAL ETT G ++TE     SPFR GP+  L D
Sbjct  207  LSGLVASIGTVGDAFDNALAETTIGLYKTEAVRDDSPFRRGPLHRLTD  254


>gi|163795382|ref|ZP_02189349.1| integrase, catalytic region [alpha proteobacterium BAL199]
 gi|159179368|gb|EDP63899.1| integrase, catalytic region [alpha proteobacterium BAL199]
Length=301

 Score = 53.5 bits (127),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 28/62 (46%), Positives = 36/62 (59%), Gaps = 4/62 (6%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
            AGL PS+G VGD+ DNAL  +  G ++TE  H    R GP RTL D+E     WV+   H
Sbjct  216  AGLEPSVGSVGDSYDNALAVSVIGLYKTEVIH----RRGPWRTLEDVEFATLDWVDWFNH  271

Query  63   TQ  64
             +
Sbjct  272  RR  273


>gi|315441898|ref|YP_004074777.1| transposase [Mycobacterium sp. Spyr1]
 gi|315260201|gb|ADT96942.1| transposase [Mycobacterium sp. Spyr1]
Length=279

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG +GD+ DNAL ET  G ++ E  +G P RSGP +T+ D+E     WV
Sbjct  189  GAVPSIGSIGDSFDNALAETVNGYYKAELIYG-PARSGPWKTVEDVELATLGWV  241


>gi|118462685|ref|YP_880715.1| transposase [Mycobacterium avium 104]
 gi|118462715|ref|YP_881684.1| transposase [Mycobacterium avium 104]
 gi|118464055|ref|YP_880912.1| transposase [Mycobacterium avium 104]
 12 more sequence titles
 gi|118464280|ref|YP_884211.1| transposase [Mycobacterium avium 104]
 gi|118464347|ref|YP_881092.1| transposase [Mycobacterium avium 104]
 gi|118466773|ref|YP_881870.1| transposase [Mycobacterium avium 104]
 gi|5524307|gb|AAD44200.1|AF143772_2 IS1601-D [Mycobacterium avium]
 gi|5524323|gb|AAD44216.1|AF143772_21 transposase [Mycobacterium avium]
 gi|5524342|gb|AAD44235.1|AF143772_42 IS1601-D [Mycobacterium avium]
 gi|118163972|gb|ABK64869.1| transposase [Mycobacterium avium 104]
 gi|118164002|gb|ABK64899.1| transposase [Mycobacterium avium 104]
 gi|118165342|gb|ABK66239.1| transposase [Mycobacterium avium 104]
 gi|118165567|gb|ABK66464.1| transposase [Mycobacterium avium 104]
 gi|118165634|gb|ABK66531.1| transposase [Mycobacterium avium 104]
 gi|118168060|gb|ABK68957.1| transposase [Mycobacterium avium 104]
Length=305

 Score = 53.1 bits (126),  Expect = 1e-05, Method: Compositional matrix adjust.
 Identities = 30/71 (43%), Positives = 39/71 (55%), Gaps = 5/71 (7%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCHT  63
            G  PSIG VGD+ DNAL ET  G ++ E  +G P R GP +T+ D+E    +WV    H 
Sbjct  215  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARPGPWKTVEDVELATLSWV----HW  269

Query  64   QQGVRIPGRLQ  74
                R+ G L 
Sbjct  270  HNTSRLHGYLN  280


>gi|5524330|gb|AAD44223.1|AF143772_29 IS1601-D [Mycobacterium avium]
Length=305

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P R GP +T+ D+E    +WV
Sbjct  215  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARPGPWKTVEDVELATLSWV  267


>gi|4572557|gb|AAC71699.2| unknown [Mycobacterium avium]
Length=305

 Score = 52.4 bits (124),  Expect = 2e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P R GP +T+ D+E    +WV
Sbjct  215  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARPGPWKTVEDVELATLSWV  267


>gi|118462766|ref|YP_881428.1| transposase [Mycobacterium avium 104]
 gi|118164053|gb|ABK64950.1| transposase subunit; putative [Mycobacterium avium 104]
Length=117

 Score = 52.0 bits (123),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4   GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
           G  PSIG VGD+ DNAL ET  G ++ E  +G P RS P +T+ D+E    +WV
Sbjct  27  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARSRPWKTVEDVELATLSWV  79


>gi|118465607|ref|YP_882422.1| transposase [Mycobacterium avium 104]
 gi|118166894|gb|ABK67791.1| transposase [Mycobacterium avium 104]
Length=279

 Score = 51.6 bits (122),  Expect = 3e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P RS P +T+ D+E    +WV
Sbjct  189  GTVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARSRPWKTVEDVELATLSWV  241


>gi|118462572|ref|YP_881888.1| transposase [Mycobacterium avium 104]
 gi|118462656|ref|YP_880920.1| transposase [Mycobacterium avium 104]
 gi|118463539|ref|YP_882453.1| transposase [Mycobacterium avium 104]
 11 more sequence titles
 gi|118464938|ref|YP_882446.1| transposase [Mycobacterium avium 104]
 gi|118465056|ref|YP_881371.1| transposase [Mycobacterium avium 104]
 gi|118466284|ref|YP_881108.1| transposase [Mycobacterium avium 104]
 gi|118467112|ref|YP_881466.1| transposase [Mycobacterium avium 104]
 gi|118163859|gb|ABK64756.1| transposase [Mycobacterium avium 104]
 gi|118163943|gb|ABK64840.1| transposase [Mycobacterium avium 104]
 gi|118164826|gb|ABK65723.1| transposase [Mycobacterium avium 104]
 gi|118166225|gb|ABK67122.1| transposase [Mycobacterium avium 104]
 gi|118166343|gb|ABK67240.1| transposase [Mycobacterium avium 104]
 gi|118167571|gb|ABK68468.1| transposase [Mycobacterium avium 104]
 gi|118168399|gb|ABK69296.1| transposase [Mycobacterium avium 104]
Length=279

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P RS P +T+ D+E    +WV
Sbjct  189  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARSRPWKTVEDVELATLSWV  241


>gi|15619023|gb|AAL02532.1|AF232829_6 putative transposase subunit B [Mycobacterium avium]
 gi|15619025|gb|AAL02534.1|AF232829_8 transposase subunit B [Mycobacterium avium]
Length=306

 Score = 51.6 bits (122),  Expect = 4e-05, Method: Compositional matrix adjust.
 Identities = 26/54 (49%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG VGD+ DNAL ET  G ++ E  +G P RS P +T+ D+E    +WV
Sbjct  216  GAVPSIGTVGDSFDNALAETVNGYYKAELIYG-PARSRPWKTVEDVELATLSWV  268


>gi|296164128|ref|ZP_06846744.1| transposase subunit B [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295900511|gb|EFG79901.1| transposase subunit B [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=325

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 25/54 (47%), Positives = 34/54 (63%), Gaps = 1/54 (1%)

Query  4    GLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWV  57
            G  PSIG +GD+ DNAL ET  G ++ E  +G P  +GP +T+ D+E    AWV
Sbjct  235  GAVPSIGTIGDSYDNALAETVNGYYKAELIYG-PAHTGPWKTVEDVELATLAWV  287


>gi|284989769|ref|YP_003408323.1| Integrase catalytic domain-containing protein [Geodermatophilus 
obscurus DSM 43160]
 gi|284063014|gb|ADB73952.1| Integrase catalytic region [Geodermatophilus obscurus DSM 43160]
Length=288

 Score = 51.2 bits (121),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 27/56 (49%), Positives = 34/56 (61%), Gaps = 4/56 (7%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            AG+ PS+G VGDALDNAL E+  G  +TE  H    R GP R + D+E     WV+
Sbjct  199  AGVAPSVGTVGDALDNALAESQIGLFKTELIH----RRGPWRNVDDVELATLEWVD  250


>gi|288961265|ref|YP_003451604.1| transposase [Azospirillum sp. B510]
 gi|288913573|dbj|BAI75060.1| transposase [Azospirillum sp. B510]
Length=234

 Score = 50.8 bits (120),  Expect = 6e-05, Method: Compositional matrix adjust.
 Identities = 26/62 (42%), Positives = 35/62 (57%), Gaps = 4/62 (6%)

Query  3    AGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVEHTCH  62
            AG+ PS+G +GD+ DNAL ET  G ++TE       R GP RTL  +E     WV+   H
Sbjct  149  AGVEPSVGSIGDSYDNALAETINGLYKTEVIR----RRGPWRTLEAVEFATLEWVDWFNH  204

Query  63   TQ  64
             +
Sbjct  205  RR  206


>gi|25027799|ref|NP_737853.1| putative transposase [Corynebacterium efficiens YS-314]
 gi|259506189|ref|ZP_05749091.1| IS6110 transposase [Corynebacterium efficiens YS-314]
 gi|23493082|dbj|BAC18053.1| putative transposase [Corynebacterium efficiens YS-314]
 gi|259166217|gb|EEW50771.1| IS6110 transposase [Corynebacterium efficiens YS-314]
Length=145

 Score = 50.8 bits (120),  Expect = 7e-05, Method: Compositional matrix adjust.
 Identities = 24/57 (43%), Positives = 34/57 (60%), Gaps = 0/57 (0%)

Query  2    LAGLRPSIGIVGDALDNALCETTTGPHRTECSHGSPFRSGPIRTLADLEDIASAWVE  58
            L G+ PSIG VGDA DNAL E+  G ++TEC     F    + ++ D+E    +WV+
Sbjct  48   LQGITPSIGSVGDAYDNALMESINGLYKTECIGSRIFTPERMESIVDVELATMSWVQ  104



Lambda     K      H
   0.319    0.136    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 130617491818


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40