BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2090 Length=393 Score E Sequences producing significant alignments: (Bits) Value gi|15609227|ref|NP_216606.1| 5'-3' exonuclease [Mycobacterium tu... 762 0.0 gi|148823304|ref|YP_001288058.1| 5'-3' exonuclease [Mycobacteriu... 759 0.0 gi|253798851|ref|YP_003031852.1| 5-3 exonuclease [Mycobacterium ... 757 0.0 gi|340627103|ref|YP_004745555.1| putative 5'-3' exonuclease [Myc... 743 0.0 gi|289447711|ref|ZP_06437455.1| 5'-3' exonuclease [Mycobacterium... 712 0.0 gi|289574771|ref|ZP_06454998.1| 5'-3' exonuclease [Mycobacterium... 712 0.0 gi|308379118|ref|ZP_07485107.2| 5'-3' exonuclease, C- SAM fold p... 712 0.0 gi|289443596|ref|ZP_06433340.1| 5'-3' exonuclease [Mycobacterium... 711 0.0 gi|31793273|ref|NP_855766.1| 5'-3' exonuclease [Mycobacterium bo... 711 0.0 gi|121637975|ref|YP_978199.1| 5'-3' exonuclease [Mycobacterium b... 674 0.0 gi|308380268|ref|ZP_07489325.2| 5-3 exonuclease [Mycobacterium t... 658 0.0 gi|254364903|ref|ZP_04980949.1| hypothetical 5-3 exonuclease [My... 655 0.0 gi|167967041|ref|ZP_02549318.1| 5'-3'-exonuclease, putative [Myc... 622 2e-176 gi|15841581|ref|NP_336618.1| 5'-3'-exonuclease, putative [Mycoba... 620 1e-175 gi|308232029|ref|ZP_07663975.1| 5-3 exonuclease [Mycobacterium t... 613 1e-173 gi|254232253|ref|ZP_04925580.1| hypothetical protein TBCG_02040 ... 611 7e-173 gi|308374490|ref|ZP_07436248.2| 5'-3' exonuclease, C- SAM fold p... 599 2e-169 gi|289750685|ref|ZP_06510063.1| 5-3 exonuclease [Mycobacterium t... 583 1e-164 gi|183983075|ref|YP_001851366.1| 5'-3' exonuclease [Mycobacteriu... 550 2e-154 gi|118617832|ref|YP_906164.1| 5'-3' exonuclease [Mycobacterium u... 548 7e-154 gi|240172771|ref|ZP_04751430.1| 5'-3' exonuclease [Mycobacterium... 533 3e-149 gi|342859794|ref|ZP_08716447.1| 5'-3' exonuclease [Mycobacterium... 530 1e-148 gi|254775082|ref|ZP_05216598.1| hypothetical protein MaviaA2_104... 518 5e-145 gi|41407923|ref|NP_960759.1| hypothetical protein MAP1825 [Mycob... 514 8e-144 gi|336462030|gb|EGO40878.1| 5'-3' exonuclease (including N-termi... 514 1e-143 gi|254819633|ref|ZP_05224634.1| hypothetical protein MintA_06909... 510 1e-142 gi|296165171|ref|ZP_06847719.1| 5'-3' exonuclease [Mycobacterium... 510 2e-142 gi|118463818|ref|YP_881611.1| 5'-3' exonuclease [Mycobacterium a... 509 2e-142 gi|118469848|ref|YP_888174.1| 5'-3' exonuclease [Mycobacterium s... 472 4e-131 gi|126435099|ref|YP_001070790.1| 5'-3' exonuclease [Mycobacteriu... 461 6e-128 gi|108799445|ref|YP_639642.1| 5'-3' exonuclease [Mycobacterium s... 461 7e-128 gi|308403489|ref|ZP_07493848.2| hypothetical protein TMLG_03582 ... 461 9e-128 gi|315444011|ref|YP_004076890.1| 5'-3' exonuclease (including N-... 454 1e-125 gi|145223684|ref|YP_001134362.1| 5'-3' exonuclease [Mycobacteriu... 454 2e-125 gi|120404410|ref|YP_954239.1| 5'-3' exonuclease [Mycobacterium v... 453 3e-125 gi|333990752|ref|YP_004523366.1| 5'-3' exonuclease [Mycobacteriu... 444 1e-122 gi|169629277|ref|YP_001702926.1| 5'-3' exonuclease [Mycobacteriu... 442 5e-122 gi|262202398|ref|YP_003273606.1| 5'-3' exonuclease, N-terminal r... 387 2e-105 gi|333919689|ref|YP_004493270.1| 5'-3' exonuclease [Amycolicicoc... 386 3e-105 gi|325676816|ref|ZP_08156489.1| 5'-3' exonuclease [Rhodococcus e... 376 4e-102 gi|312139733|ref|YP_004007069.1| 5'-3' exonuclease [Rhodococcus ... 373 2e-101 gi|343927928|ref|ZP_08767394.1| putative 5'-3' exonuclease [Gord... 372 8e-101 gi|257056192|ref|YP_003134024.1| 5'-3' exonuclease (including N-... 365 9e-99 gi|326382291|ref|ZP_08203983.1| 5'-3' exonuclease [Gordonia neof... 355 6e-96 gi|302527225|ref|ZP_07279567.1| DNA polymerase I [Streptomyces s... 346 4e-93 gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal r... 345 8e-93 gi|296394174|ref|YP_003659058.1| 5'-3' exonuclease, N-terminal r... 340 2e-91 gi|256376383|ref|YP_003100043.1| 5'-3' exonuclease [Actinosynnem... 340 3e-91 gi|229493526|ref|ZP_04387311.1| 5-3 exonuclease [Rhodococcus ery... 338 9e-91 gi|226306651|ref|YP_002766611.1| 5'-3' exonuclease [Rhodococcus ... 334 1e-89 >gi|15609227|ref|NP_216606.1| 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv] gi|148661905|ref|YP_001283428.1| putative 5'-3' exonuclease [Mycobacterium tuberculosis H37Ra] gi|1370257|emb|CAA98202.1| Probable 5'-3' exonuclease [Mycobacterium tuberculosis H37Rv] gi|148506057|gb|ABQ73866.1| putative 5'-3' exonuclease [Mycobacterium tuberculosis H37Ra] Length=393 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/393 (100%), Positives = 393/393 (100%), Gaps = 0/393 (0%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL Sbjct 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 >gi|148823304|ref|YP_001288058.1| 5'-3' exonuclease [Mycobacterium tuberculosis F11] gi|289745366|ref|ZP_06504744.1| 5'-3' exonuclease [Mycobacterium tuberculosis 02_1987] gi|289758207|ref|ZP_06517585.1| 5'-3' exonuclease [Mycobacterium tuberculosis T85] 13 more sequence titles Length=393 Score = 759 bits (1961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 392/393 (99%), Positives = 392/393 (99%), Gaps = 0/393 (0%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PL Sbjct 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 360 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 >gi|253798851|ref|YP_003031852.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 1435] gi|289554126|ref|ZP_06443336.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 605] gi|253320354|gb|ACT24957.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 1435] gi|289438758|gb|EFD21251.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 605] gi|328458610|gb|AEB04033.1| 5-3 exonuclease [Mycobacterium tuberculosis KZN 4207] gi|344219917|gb|AEN00548.1| 5'-3' exonuclease [Mycobacterium tuberculosis CTRI-2] Length=393 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/393 (99%), Positives = 391/393 (99%), Gaps = 0/393 (0%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPL PTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLHPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PL Sbjct 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 360 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 >gi|340627103|ref|YP_004745555.1| putative 5'-3' exonuclease [Mycobacterium canettii CIPT 140010059] gi|340005293|emb|CCC44449.1| putative 5'-3' exonuclease [Mycobacterium canettii CIPT 140010059] Length=412 Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/412 (95%), Positives = 391/412 (95%), Gaps = 19/412 (4%) Query 1 MPAPDPMR-------------------GDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 41 MPAPDPMR GDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSP Sbjct 1 MPAPDPMRDDPPHPAPPRLRSPLDPTSGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 Query 42 LDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSIT 101 LDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSIT Sbjct 61 LDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSIT 120 Query 102 APDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPN 161 APDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPN Sbjct 121 APDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPN 180 Query 162 GQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGD 221 GQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGD Sbjct 181 GQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGD 240 Query 222 RDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPS 281 RDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPS Sbjct 241 RDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPS 300 Query 282 DGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVV 341 DGLPGVPGVGEKTAATLLARHGSLDQIMAAADD KTTMAKGLRTKLLAASAYIKAADRVV Sbjct 301 DGLPGVPGVGEKTAATLLARHGSLDQIMAAADDPKTTMAKGLRTKLLAASAYIKAADRVV 360 Query 342 RVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKALDTLPG 393 RVATDAPVTLSTPTDR PLVAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 361 RVATDAPVTLSTPTDRLPLVAADPERTAELATRFGVESSIARLQKALDTLPG 412 >gi|289447711|ref|ZP_06437455.1| 5'-3' exonuclease [Mycobacterium tuberculosis CPHL_A] gi|289420669|gb|EFD17870.1| 5'-3' exonuclease [Mycobacterium tuberculosis CPHL_A] gi|323719389|gb|EGB28528.1| 5'-3' exonuclease [Mycobacterium tuberculosis CDC1551A] Length=374 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/393 (95%), Positives = 373/393 (95%), Gaps = 19/393 (4%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP------ 54 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 55 -------------PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 101 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 102 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 161 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 162 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 221 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 222 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 281 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PL Sbjct 282 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 342 VAADPERTAELATRFGVESSIARLQKALDTLPG 374 >gi|289574771|ref|ZP_06454998.1| 5'-3' exonuclease [Mycobacterium tuberculosis K85] gi|339632125|ref|YP_004723767.1| 5'-3' exonuclease [Mycobacterium africanum GM041182] gi|289539202|gb|EFD43780.1| 5'-3' exonuclease [Mycobacterium tuberculosis K85] gi|339331481|emb|CCC27174.1| putative 5'-3' exonuclease [Mycobacterium africanum GM041182] Length=374 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/393 (95%), Positives = 373/393 (95%), Gaps = 19/393 (4%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP------ 54 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 PRLRSPLV+LDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 55 -------------PRLRSPLVILDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 101 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 102 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 161 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 162 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 221 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 222 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 281 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PL Sbjct 282 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 342 VAADPERTAELATRFGVESSIARLQKALDTLPG 374 >gi|308379118|ref|ZP_07485107.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis SUMu010] gi|308358102|gb|EFP46953.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis SUMu010] Length=368 Score = 712 bits (1837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/366 (100%), Positives = 366/366 (100%), Gaps = 0/366 (0%) Query 28 GDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGAS 87 GDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGAS Sbjct 3 GDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGAS 62 Query 88 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 147 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI Sbjct 63 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 122 Query 148 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 207 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA Sbjct 123 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 182 Query 208 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 267 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG Sbjct 183 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 242 Query 268 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 327 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL Sbjct 243 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 302 Query 328 LAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKA 387 LAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKA Sbjct 303 LAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKA 362 Query 388 LDTLPG 393 LDTLPG Sbjct 363 LDTLPG 368 >gi|289443596|ref|ZP_06433340.1| 5'-3' exonuclease [Mycobacterium tuberculosis T46] gi|289570203|ref|ZP_06450430.1| 5-3 exonuclease [Mycobacterium tuberculosis T17] gi|289754200|ref|ZP_06513578.1| 5'-3' exonuclease [Mycobacterium tuberculosis EAS054] gi|289416515|gb|EFD13755.1| 5'-3' exonuclease [Mycobacterium tuberculosis T46] gi|289543957|gb|EFD47605.1| 5-3 exonuclease [Mycobacterium tuberculosis T17] gi|289694787|gb|EFD62216.1| 5'-3' exonuclease [Mycobacterium tuberculosis EAS054] Length=374 Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/393 (95%), Positives = 373/393 (95%), Gaps = 19/393 (4%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP------ 54 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 55 -------------PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 101 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 102 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 161 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 162 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 221 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 222 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 281 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PL Sbjct 282 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTA+LATRFGVESSIARLQKALDTLPG Sbjct 342 VAADPERTADLATRFGVESSIARLQKALDTLPG 374 >gi|31793273|ref|NP_855766.1| 5'-3' exonuclease [Mycobacterium bovis AF2122/97] gi|31618865|emb|CAD96970.1| 5'-3' exonuclease [Mycobacterium bovis AF2122/97] Length=374 Score = 711 bits (1834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/393 (95%), Positives = 372/393 (95%), Gaps = 19/393 (4%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP------ 54 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 55 -------------PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 101 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VI QQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 102 VIIQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 161 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 162 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 221 Query 241 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 300 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA Sbjct 222 GRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA 281 Query 301 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPL 360 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PL Sbjct 282 RHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPL 341 Query 361 VAADPERTAELATRFGVESSIARLQKALDTLPG 393 VAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 342 VAADPERTAELATRFGVESSIARLQKALDTLPG 374 >gi|121637975|ref|YP_978199.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990469|ref|YP_002645156.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|121493623|emb|CAL72098.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773582|dbj|BAH26388.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Tokyo 172] gi|339295011|gb|AEJ47122.1| 5-3 exonuclease [Mycobacterium tuberculosis CCDC5079] gi|341602013|emb|CCC64687.1| 5'-3' exonuclease [Mycobacterium bovis BCG str. Moreau RDJ] Length=355 Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust. Identities = 347/351 (99%), Positives = 347/351 (99%), Gaps = 0/351 (0%) Query 43 DPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITA 102 DP GDP HPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITA Sbjct 5 DPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITA 64 Query 103 PDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNG 162 PDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNG Sbjct 65 PDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNG 124 Query 163 QPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDR 222 QPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDR Sbjct 125 QPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDR 184 Query 223 DLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSD 282 DLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSD Sbjct 185 DLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSD 244 Query 283 GLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVR 342 GLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVR Sbjct 245 GLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVR 304 Query 343 VATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKALDTLPG 393 VATDAPVTLSTPTDR PLVAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 305 VATDAPVTLSTPTDRLPLVAADPERTAELATRFGVESSIARLQKALDTLPG 355 >gi|308380268|ref|ZP_07489325.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu011] gi|308362076|gb|EFP50927.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu011] Length=337 Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust. Identities = 336/337 (99%), Positives = 337/337 (100%), Gaps = 0/337 (0%) Query 57 LRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFID 116 +RSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFID Sbjct 1 MRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFID 60 Query 117 SMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQ 176 SMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQ Sbjct 61 SMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQ 120 Query 177 VDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVR 236 VDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVR Sbjct 121 VDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVR 180 Query 237 VLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAA 296 VLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAA Sbjct 181 VLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAA 240 Query 297 TLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTD 356 TLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTD Sbjct 241 TLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTD 300 Query 357 RFPLVAADPERTAELATRFGVESSIARLQKALDTLPG 393 RFPLVAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 301 RFPLVAADPERTAELATRFGVESSIARLQKALDTLPG 337 >gi|254364903|ref|ZP_04980949.1| hypothetical 5-3 exonuclease [Mycobacterium tuberculosis str. Haarlem] gi|308376910|ref|ZP_07440493.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu008] gi|134150417|gb|EBA42462.1| hypothetical 5-3 exonuclease [Mycobacterium tuberculosis str. Haarlem] gi|308349570|gb|EFP38421.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu008] Length=337 Score = 655 bits (1690), Expect = 0.0, Method: Compositional matrix adjust. Identities = 335/337 (99%), Positives = 336/337 (99%), Gaps = 0/337 (0%) Query 57 LRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFID 116 +RSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFID Sbjct 1 MRSPLDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFID 60 Query 117 SMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQ 176 SMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQ Sbjct 61 SMAVVITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQ 120 Query 177 VDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVR 236 VDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVR Sbjct 121 VDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVR 180 Query 237 VLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAA 296 VLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAA Sbjct 181 VLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAA 240 Query 297 TLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTD 356 TLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTD Sbjct 241 TLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTD 300 Query 357 RFPLVAADPERTAELATRFGVESSIARLQKALDTLPG 393 R PLVAADPERTAELATRFGVESSIARLQKALDTLPG Sbjct 301 RLPLVAADPERTAELATRFGVESSIARLQKALDTLPG 337 >gi|167967041|ref|ZP_02549318.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis H37Ra] gi|17375479|sp|Q10699.2|EX53_MYCTU RecName: Full=5'-3' exonuclease Length=318 Score = 622 bits (1605), Expect = 2e-176, Method: Compositional matrix adjust. Identities = 317/318 (99%), Positives = 318/318 (100%), Gaps = 0/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 +RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD Sbjct 1 MRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP Sbjct 61 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 120 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV Sbjct 121 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 180 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR Sbjct 181 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 240 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF Sbjct 241 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 300 Query 376 GVESSIARLQKALDTLPG 393 GVESSIARLQKALDTLPG Sbjct 301 GVESSIARLQKALDTLPG 318 >gi|15841581|ref|NP_336618.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis CDC1551] gi|254551123|ref|ZP_05141570.1| 5'-3'-exonuclease, putative [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294997034|ref|ZP_06802725.1| 5'-3' exonuclease [Mycobacterium tuberculosis 210] 8 more sequence titles Length=318 Score = 620 bits (1599), Expect = 1e-175, Method: Compositional matrix adjust. Identities = 316/318 (99%), Positives = 317/318 (99%), Gaps = 0/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 +RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD Sbjct 1 MRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP Sbjct 61 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 120 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV Sbjct 121 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 180 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR Sbjct 181 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 240 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PLVAADPERTAELATRF Sbjct 241 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAELATRF 300 Query 376 GVESSIARLQKALDTLPG 393 GVESSIARLQKALDTLPG Sbjct 301 GVESSIARLQKALDTLPG 318 >gi|308232029|ref|ZP_07663975.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu001] gi|308215233|gb|EFO74632.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu001] Length=313 Score = 613 bits (1582), Expect = 1e-173, Method: Compositional matrix adjust. Identities = 312/313 (99%), Positives = 313/313 (100%), Gaps = 0/313 (0%) Query 81 VLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 140 +LLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP Sbjct 1 MLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 60 Query 141 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD 200 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD Sbjct 61 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD 120 Query 201 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG 260 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG Sbjct 121 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG 180 Query 261 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA 320 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA Sbjct 181 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA 240 Query 321 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESS 380 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESS Sbjct 241 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESS 300 Query 381 IARLQKALDTLPG 393 IARLQKALDTLPG Sbjct 301 IARLQKALDTLPG 313 >gi|254232253|ref|ZP_04925580.1| hypothetical protein TBCG_02040 [Mycobacterium tuberculosis C] gi|308369618|ref|ZP_07418455.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis SUMu002] gi|308370913|ref|ZP_07423185.2| 5-3 exonuclease [Mycobacterium tuberculosis SUMu003] gi|124601312|gb|EAY60322.1| hypothetical protein TBCG_02040 [Mycobacterium tuberculosis C] gi|308327019|gb|EFP15870.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis SUMu002] gi|308330454|gb|EFP19305.1| 5-3 exonuclease [Mycobacterium tuberculosis SUMu003] Length=313 Score = 611 bits (1575), Expect = 7e-173, Method: Compositional matrix adjust. Identities = 311/313 (99%), Positives = 312/313 (99%), Gaps = 0/313 (0%) Query 81 VLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 140 +LLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP Sbjct 1 MLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 60 Query 141 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD 200 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD Sbjct 61 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD 120 Query 201 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG 260 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG Sbjct 121 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG 180 Query 261 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA 320 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA Sbjct 181 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA 240 Query 321 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESS 380 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDR PLVAADPERTAELATRFGVESS Sbjct 241 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAELATRFGVESS 300 Query 381 IARLQKALDTLPG 393 IARLQKALDTLPG Sbjct 301 IARLQKALDTLPG 313 >gi|308374490|ref|ZP_07436248.2| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis SUMu006] gi|308341736|gb|EFP30587.1| 5'-3' exonuclease, C- SAM fold protein [Mycobacterium tuberculosis SUMu006] Length=306 Score = 599 bits (1545), Expect = 2e-169, Method: Compositional matrix adjust. Identities = 305/306 (99%), Positives = 305/306 (99%), Gaps = 0/306 (0%) Query 88 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 147 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI Sbjct 1 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 60 Query 148 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 207 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA Sbjct 61 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 120 Query 208 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 267 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG Sbjct 121 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 180 Query 268 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 327 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL Sbjct 181 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 240 Query 328 LAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKA 387 LAASAYIKAADRVVRVATDAPVTLSTPTDR PLVAADPERTAELATRFGVESSIARLQKA Sbjct 241 LAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTAELATRFGVESSIARLQKA 300 Query 388 LDTLPG 393 LDTLPG Sbjct 301 LDTLPG 306 >gi|289750685|ref|ZP_06510063.1| 5-3 exonuclease [Mycobacterium tuberculosis T92] gi|289691272|gb|EFD58701.1| 5-3 exonuclease [Mycobacterium tuberculosis T92] Length=306 Score = 583 bits (1504), Expect = 1e-164, Method: Compositional matrix adjust. Identities = 298/306 (98%), Positives = 299/306 (98%), Gaps = 0/306 (0%) Query 88 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 147 MWFRS GVPSSITAPD R VNA RGFIDSMAVVITQQRP RLAVCLDLDWRPQFRVDLI Sbjct 1 MWFRSIIGVPSSITAPDDRTVNAERGFIDSMAVVITQQRPTRLAVCLDLDWRPQFRVDLI 60 Query 148 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 207 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA Sbjct 61 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 120 Query 208 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 267 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG Sbjct 121 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 180 Query 268 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 327 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL Sbjct 181 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 240 Query 328 LAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKA 387 LAASAYIKAADRVVRVATDAPVTLSTPTDR PLVAADPERTA+LATRFGVESSIARLQKA Sbjct 241 LAASAYIKAADRVVRVATDAPVTLSTPTDRLPLVAADPERTADLATRFGVESSIARLQKA 300 Query 388 LDTLPG 393 LDTLPG Sbjct 301 LDTLPG 306 >gi|183983075|ref|YP_001851366.1| 5'-3' exonuclease [Mycobacterium marinum M] gi|183176401|gb|ACC41511.1| 5'-3' exonuclease [Mycobacterium marinum M] Length=318 Score = 550 bits (1416), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 279/315 (89%), Positives = 297/315 (95%), Gaps = 0/315 (0%) Query 78 SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLD 137 +PL+LLDGASMWFRS+FGVPSSITAPDGRP+NAVRGFIDSMAVVITQ RP+RLAVCLDLD Sbjct 3 APLLLLDGASMWFRSYFGVPSSITAPDGRPINAVRGFIDSMAVVITQHRPSRLAVCLDLD 62 Query 138 WRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGF 197 WRPQFRVDLIPSYKAHRVAEPEP GQPDVEEVPDELTPQVDMIMELLDAFGI AGA GF Sbjct 63 WRPQFRVDLIPSYKAHRVAEPEPAGQPDVEEVPDELTPQVDMIMELLDAFGIPAAGAAGF 122 Query 198 EADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAE 257 EADDVLGTLA +E+RDPV+VVSGDRDLLQVVADDPVPVRVLYLGRGL+KATLFGP+EVAE Sbjct 123 EADDVLGTLAAQEQRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSKATLFGPSEVAE 182 Query 258 RYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKT 317 RYGLPA RAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSLD+I+AAA D K+ Sbjct 183 RYGLPAERAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDRIVAAAHDPKS 242 Query 318 TMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGV 377 TMAKG+RTKLLAASAYI AA VVRVATDAPVT +TPTD PLVAADP+RTAELAT +GV Sbjct 243 TMAKGVRTKLLAASAYIDAARSVVRVATDAPVTFTTPTDALPLVAADPQRTAELATEYGV 302 Query 378 ESSIARLQKALDTLP 392 SSIARLQKALD LP Sbjct 303 GSSIARLQKALDALP 317 >gi|118617832|ref|YP_906164.1| 5'-3' exonuclease [Mycobacterium ulcerans Agy99] gi|118569942|gb|ABL04693.1| 5'-3' exonuclease [Mycobacterium ulcerans Agy99] Length=318 Score = 548 bits (1411), Expect = 7e-154, Method: Compositional matrix adjust. Identities = 279/315 (89%), Positives = 296/315 (94%), Gaps = 0/315 (0%) Query 78 SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLD 137 +PL+LLDGASMWFRS+FGVPSSITAPDGRP+NAVRGFIDSMAVVITQ RP+RLAVCLDLD Sbjct 3 APLLLLDGASMWFRSYFGVPSSITAPDGRPINAVRGFIDSMAVVITQHRPSRLAVCLDLD 62 Query 138 WRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGF 197 WRPQFRVDLIPSYKAHRVAEPEP GQPDVEEVPDELTPQVDMIMELLDAFGI AGA GF Sbjct 63 WRPQFRVDLIPSYKAHRVAEPEPAGQPDVEEVPDELTPQVDMIMELLDAFGIPAAGAAGF 122 Query 198 EADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAE 257 EADDVLGTLA +E+RDPV+VVSGDRDLLQVVADDPVPVRVLYLGRGL KATLFGP+EVAE Sbjct 123 EADDVLGTLAAQEQRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLPKATLFGPSEVAE 182 Query 258 RYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKT 317 RYGLPA RAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSLD+I+AAA D K+ Sbjct 183 RYGLPAERAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDRIVAAAHDPKS 242 Query 318 TMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGV 377 TMAKG+RTKLLAASAYI AA VVRVATDAPVT +TPTD PLVAADP+RTAELAT +GV Sbjct 243 TMAKGVRTKLLAASAYIDAARSVVRVATDAPVTFTTPTDALPLVAADPQRTAELATEYGV 302 Query 378 ESSIARLQKALDTLP 392 SSIARLQKALD LP Sbjct 303 GSSIARLQKALDALP 317 >gi|240172771|ref|ZP_04751430.1| 5'-3' exonuclease [Mycobacterium kansasii ATCC 12478] Length=318 Score = 533 bits (1372), Expect = 3e-149, Method: Compositional matrix adjust. Identities = 270/317 (86%), Positives = 287/317 (91%), Gaps = 0/317 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + +PL+LLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQ RP RL VCLD Sbjct 1 MSAPLLLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQHRPGRLVVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDLI SYKAHRVAE EP G+PD+EEVPDELTPQVDMIMELLDA+GI AGAP Sbjct 61 LDWRPQFRVDLISSYKAHRVAETEPEGRPDIEEVPDELTPQVDMIMELLDAYGIPTAGAP 120 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDV+GTLA +ER DPV+VVSGDRDLLQVVADDPVPVRVLYLGRGL+KATLFGPAEV Sbjct 121 GFEADDVIGTLAAQERHDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSKATLFGPAEV 180 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AERYGLPA RAG+AYAELALLRGDPSDGLPGVPGVGEKTAA LLA HGSLDQIM+AA D Sbjct 181 AERYGLPADRAGSAYAELALLRGDPSDGLPGVPGVGEKTAAALLAAHGSLDQIMSAAHDP 240 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ MAKGLR K+L AS YI+ A VVRVATD+PV LSTPTD PLVAADP RTAELATR+ Sbjct 241 KSGMAKGLRAKVLGASDYIEVAGSVVRVATDSPVQLSTPTDALPLVAADPARTAELATRY 300 Query 376 GVESSIARLQKALDTLP 392 GV SSI RLQKALD LP Sbjct 301 GVGSSITRLQKALDALP 317 >gi|342859794|ref|ZP_08716447.1| 5'-3' exonuclease [Mycobacterium colombiense CECT 3035] gi|342132926|gb|EGT86146.1| 5'-3' exonuclease [Mycobacterium colombiense CECT 3035] Length=318 Score = 530 bits (1365), Expect = 1e-148, Method: Compositional matrix adjust. Identities = 269/318 (85%), Positives = 287/318 (91%), Gaps = 0/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 +RSPLVLLDGASMWFRS+FGVPSSITAPDGRPVNAVRGFIDS+AVVITQQRP RLAVCLD Sbjct 1 MRSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFIDSVAVVITQQRPRRLAVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDL+PSYKAHRVAE EP +PD+EEVPD+LTPQ+DMI ELLDAFGI AGA Sbjct 61 LDWRPQFRVDLVPSYKAHRVAEEEPQNEPDIEEVPDDLTPQIDMIAELLDAFGIPTAGAA 120 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDVLGTLA RER DPV+VVSGDRDLLQVVADDPVPVRVLYLGRGL++ATLFGP EV Sbjct 121 GFEADDVLGTLAARERNDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLSRATLFGPDEV 180 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AE YG+P RAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSLDQI+AAA D Sbjct 181 AEHYGVPVDRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLDQILAAAHDP 240 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ MAKG+RTKLL A YI+AA +VVRVATDAPVT STP D PLVAADP RTAELAT Sbjct 241 KSKMAKGIRTKLLGALDYIEAAGKVVRVATDAPVTFSTPDDELPLVAADPRRTAELATEL 300 Query 376 GVESSIARLQKALDTLPG 393 GV SSIARLQKALD LP Sbjct 301 GVGSSIARLQKALDALPN 318 >gi|254775082|ref|ZP_05216598.1| hypothetical protein MaviaA2_10471 [Mycobacterium avium subsp. avium ATCC 25291] Length=318 Score = 518 bits (1335), Expect = 5e-145, Method: Compositional matrix adjust. Identities = 263/318 (83%), Positives = 287/318 (91%), Gaps = 0/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 +RSPLVLLDGASMWFRS+FGVPSSITAPDGRPVNAVRGF+DS+AVVITQQRP+RL VCLD Sbjct 1 MRSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDL+PSYKAHRVAE EP G+PDVEEVPD+LTPQ+D+I ELL+A+GI AGA Sbjct 61 LDWRPQFRVDLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDIIAELLEAYGIPTAGAE 120 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDVLGTLA RER DPV+VVSGDRDLLQVV+DDPVPVRVLYLGRGL+KATLFGP EV Sbjct 121 GFEADDVLGTLAARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPVEV 180 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AE YG+P RAG AYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSL +++AAA D Sbjct 181 AEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLHRVLAAAHDP 240 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ AKGLRTKLL A YI+AA VVRVATDAPV LSTP+D PLVAADP+RTAELAT Sbjct 241 KSKTAKGLRTKLLGALDYIEAAGAVVRVATDAPVKLSTPSDAVPLVAADPQRTAELATEL 300 Query 376 GVESSIARLQKALDTLPG 393 GV SSIARLQKALD LPG Sbjct 301 GVGSSIARLQKALDALPG 318 >gi|41407923|ref|NP_960759.1| hypothetical protein MAP1825 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396277|gb|AAS04142.1| hypothetical protein MAP_1825 [Mycobacterium avium subsp. paratuberculosis K-10] Length=318 Score = 514 bits (1325), Expect = 8e-144, Method: Compositional matrix adjust. Identities = 262/318 (83%), Positives = 285/318 (90%), Gaps = 0/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 +R PLVLLDGASMWFRS+FGVPSSITAPDGRPVNAVRGF+DS+AVVITQQRP+RL VCLD Sbjct 1 MRLPLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDL+PSYKAHRV E EP G+PDVEEVPD+LTPQ+DMI ELL+A+GI AGA Sbjct 61 LDWRPQFRVDLVPSYKAHRVPEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAE 120 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDVLGTLA RER DPV+VVSGDRDLLQVV+DDPVPVRVLYLGRGL+KATLFGP EV Sbjct 121 GFEADDVLGTLAARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPVEV 180 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AE YG+P RAG AYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSL++++AAA D Sbjct 181 AEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLERVLAAAHDP 240 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ MAKGLR KLL A YI+AA VVRVATDAPV LSTP+D PLVAADP RTAELAT Sbjct 241 KSKMAKGLRAKLLGALDYIEAAGAVVRVATDAPVKLSTPSDAVPLVAADPHRTAELATEL 300 Query 376 GVESSIARLQKALDTLPG 393 GV SSIARLQKALD LPG Sbjct 301 GVGSSIARLQKALDALPG 318 >gi|336462030|gb|EGO40878.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Mycobacterium avium subsp. paratuberculosis S397] Length=330 Score = 514 bits (1324), Expect = 1e-143, Method: Compositional matrix adjust. Identities = 262/318 (83%), Positives = 285/318 (90%), Gaps = 0/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 +R PLVLLDGASMWFRS+FGVPSSITAPDGRPVNAVRGF+DS+AVVITQQRP+RL VCLD Sbjct 13 MRLPLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLD 72 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVDL+PSYKAHRV E EP G+PDVEEVPD+LTPQ+DMI ELL+A+GI AGA Sbjct 73 LDWRPQFRVDLVPSYKAHRVPEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAE 132 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDVLGTLA RER DPV+VVSGDRDLLQVV+DDPVPVRVLYLGRGL+KATLFGP EV Sbjct 133 GFEADDVLGTLAARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPVEV 192 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AE YG+P RAG AYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSL++++AAA D Sbjct 193 AEHYGVPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLERVLAAAHDP 252 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ MAKGLR KLL A YI+AA VVRVATDAPV LSTP+D PLVAADP RTAELAT Sbjct 253 KSKMAKGLRAKLLGALDYIEAAGAVVRVATDAPVKLSTPSDAVPLVAADPHRTAELATEL 312 Query 376 GVESSIARLQKALDTLPG 393 GV SSIARLQKALD LPG Sbjct 313 GVGSSIARLQKALDALPG 330 >gi|254819633|ref|ZP_05224634.1| hypothetical protein MintA_06909 [Mycobacterium intracellulare ATCC 13950] Length=318 Score = 510 bits (1314), Expect = 1e-142, Method: Compositional matrix adjust. Identities = 260/314 (83%), Positives = 281/314 (90%), Gaps = 0/314 (0%) Query 79 PLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDW 138 PLVLLDGASMWFRS+FGVPSSITAPDGRPVNAVRGFIDS+A VITQQRP+RL VCLDLDW Sbjct 4 PLVLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFIDSVAFVITQQRPSRLVVCLDLDW 63 Query 139 RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFE 198 RPQFRVDL+PSYKAHRVAEPEP G+PD+EEVPD+LTPQ+DMI ELLDAFGI AGA GFE Sbjct 64 RPQFRVDLVPSYKAHRVAEPEPPGEPDIEEVPDDLTPQIDMIAELLDAFGIPTAGAEGFE 123 Query 199 ADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAER 258 ADDVLGTLA RER DPV+VVSGDRDL+QVV+DDPVPVRVLYLGRGL+KATLFGPAEVAE Sbjct 124 ADDVLGTLAARERDDPVVVVSGDRDLMQVVSDDPVPVRVLYLGRGLSKATLFGPAEVAEH 183 Query 259 YGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTT 318 YG+P RAG AYAELALLRGDPSDGLPGVPGVGEKTAA+LLA+HGSL+QI+AAA D K+ Sbjct 184 YGVPVERAGPAYAELALLRGDPSDGLPGVPGVGEKTAASLLAQHGSLEQILAAAHDPKSK 243 Query 319 MAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVE 378 M KGLR KLL A YI+AA VVRVATDA VT ST D PLVAADP+RTA+LAT GV Sbjct 244 MPKGLRAKLLGALDYIEAAGDVVRVATDAHVTFSTAGDELPLVAADPQRTAKLATELGVG 303 Query 379 SSIARLQKALDTLP 392 SSIARLQKALD LP Sbjct 304 SSIARLQKALDALP 317 >gi|296165171|ref|ZP_06847719.1| 5'-3' exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899479|gb|EFG78937.1| 5'-3' exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] Length=306 Score = 510 bits (1313), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 255/305 (84%), Positives = 278/305 (92%), Gaps = 0/305 (0%) Query 88 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 147 MWFRS+FGVPSSITAPDGRPVNAVRGFIDS+AVVI QQRP+RL VCLDLDWRPQFRVDL+ Sbjct 1 MWFRSYFGVPSSITAPDGRPVNAVRGFIDSLAVVINQQRPSRLVVCLDLDWRPQFRVDLV 60 Query 148 PSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGTLA 207 PSYKAHRVAE EP G+PDVEEVPD+LTPQ+DMIMELLDAFGI AGA GFEADDVLGTLA Sbjct 61 PSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDMIMELLDAFGIPTAGAEGFEADDVLGTLA 120 Query 208 TRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHRAG 267 RERRDPV+VVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVA+ YG+P HRAG Sbjct 121 ARERRDPVVVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVADHYGVPQHRAG 180 Query 268 AAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRTKL 327 AYAE AL+RGDPSDGLPGVPGVGEKTAA LLA+HGSL+ I+AAA D K+ MAKGLR+KL Sbjct 181 PAYAEFALMRGDPSDGLPGVPGVGEKTAAALLAQHGSLEHILAAARDPKSKMAKGLRSKL 240 Query 328 LAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQKA 387 L A+ YI+AA +VVRVATDAPV+LSTPTD PL A DP+RTA+LAT+ GV SSIARLQKA Sbjct 241 LGATDYIEAAGQVVRVATDAPVSLSTPTDALPLAAGDPQRTAKLATKLGVGSSIARLQKA 300 Query 388 LDTLP 392 LD LP Sbjct 301 LDALP 305 >gi|118463818|ref|YP_881611.1| 5'-3' exonuclease [Mycobacterium avium 104] gi|118165105|gb|ABK66002.1| 5'-3' exonuclease [Mycobacterium avium 104] Length=313 Score = 509 bits (1312), Expect = 2e-142, Method: Compositional matrix adjust. Identities = 259/313 (83%), Positives = 282/313 (91%), Gaps = 0/313 (0%) Query 81 VLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 140 +LLDGASMWFRS+FGVPSSITAPDGRPVNAVRGF+DS+AVVITQQRP+RL VCLDLDWRP Sbjct 1 MLLDGASMWFRSYFGVPSSITAPDGRPVNAVRGFLDSLAVVITQQRPSRLVVCLDLDWRP 60 Query 141 QFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEAD 200 QFRVDL+PSYKAHRVAE EP G+PDVEEVPD+LTPQ+DMI ELL+A+GI AGA GFEAD Sbjct 61 QFRVDLVPSYKAHRVAEAEPAGEPDVEEVPDDLTPQIDMIAELLEAYGIPTAGAEGFEAD 120 Query 201 DVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYG 260 DVLGTLA RER DPV+VVSGDRDLLQVV+DDPVPVRVLYLGRGL+KATLFGP EVAE YG Sbjct 121 DVLGTLAARERDDPVVVVSGDRDLLQVVSDDPVPVRVLYLGRGLSKATLFGPVEVAEHYG 180 Query 261 LPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMA 320 +P RAG AYAELALLRGDPSDGLPGVPGVGEKTAATLLA+HGSL +++AAA D K+ MA Sbjct 181 VPVDRAGPAYAELALLRGDPSDGLPGVPGVGEKTAATLLAQHGSLHRVLAAAHDPKSKMA 240 Query 321 KGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESS 380 KGLR KLL A YI+AA VVRVATDAPV LSTP+D PLVAADP+RTAELAT GV SS Sbjct 241 KGLRAKLLGALDYIEAAGPVVRVATDAPVKLSTPSDAVPLVAADPQRTAELATELGVGSS 300 Query 381 IARLQKALDTLPG 393 IARLQKALD LPG Sbjct 301 IARLQKALDALPG 313 >gi|118469848|ref|YP_888174.1| 5'-3' exonuclease [Mycobacterium smegmatis str. MC2 155] gi|118171135|gb|ABK72031.1| 5'-3' exonuclease [Mycobacterium smegmatis str. MC2 155] Length=338 Score = 472 bits (1215), Expect = 4e-131, Method: Compositional matrix adjust. Identities = 238/319 (75%), Positives = 273/319 (86%), Gaps = 1/319 (0%) Query 75 RLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCL 134 RL +P++LLDGASMWFRS+FGVPSSI APDGRPVNAVRGFID+++ ++T+++P RL VC Sbjct 19 RLTAPILLLDGASMWFRSYFGVPSSIKAPDGRPVNAVRGFIDAISTLVTREKPRRLVVCR 78 Query 135 DLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194 D DWRPQ+RVDLIPSYKAHRVAEPEP+G PD+EEVPD+LTPQV+MI+ELLDAFGI AGA Sbjct 79 DDDWRPQWRVDLIPSYKAHRVAEPEPDGVPDIEEVPDDLTPQVNMILELLDAFGIPTAGA 138 Query 195 PGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVP-VRVLYLGRGLAKATLFGPA 253 GFEADDVLGTL+ RE RDPV+VVSGDRDLLQ+V D+P P VRVLYLGRGLAKAT +GPA Sbjct 139 AGFEADDVLGTLSAREERDPVVVVSGDRDLLQLVRDEPAPQVRVLYLGRGLAKATKWGPA 198 Query 254 EVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAAD 313 EVAE+YG+P RAG AYAELALLRGDPSDGLPGV G+GEKTAA+LLA+HGSL I+ AA Sbjct 199 EVAEQYGVPLDRAGTAYAELALLRGDPSDGLPGVAGIGEKTAASLLAKHGSLQNILDAAH 258 Query 314 DRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELAT 373 D K+ ++K RTKLL A YI AA+ VVRVATDAPVT STPTD PL A DP R AELA Sbjct 259 DPKSGLSKAHRTKLLGAVDYIAAAETVVRVATDAPVTFSTPTDTLPLAAGDPARVAELAA 318 Query 374 RFGVESSIARLQKALDTLP 392 +GV SSI+RLQ ALD LP Sbjct 319 AYGVSSSISRLQTALDQLP 337 >gi|126435099|ref|YP_001070790.1| 5'-3' exonuclease [Mycobacterium sp. JLS] gi|126234899|gb|ABN98299.1| 5'-3' exonuclease [Mycobacterium sp. JLS] Length=316 Score = 461 bits (1187), Expect = 6e-128, Method: Compositional matrix adjust. Identities = 233/316 (74%), Positives = 272/316 (87%), Gaps = 1/316 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + +PL+LLDGASMWFRS+F +PSSITAPDGRPVNAVRGF+D++A++I ++RP+RL VC D Sbjct 1 MSAPLLLLDGASMWFRSYFALPSSITAPDGRPVNAVRGFLDTVAMLIGRERPSRLVVCRD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 DWRPQ+RVDL+PSYKAHRVAEP+ G DVE VPDELTPQVDMIME+LDAFGI AGAP Sbjct 61 DDWRPQWRVDLVPSYKAHRVAEPQAAGT-DVEVVPDELTPQVDMIMEMLDAFGIPHAGAP 119 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G+EADDVLGTLA E RD VIVVSGDRD+LQVV DDPV VRVLYLGRG++KATLFGPAEV Sbjct 120 GYEADDVLGTLAAAEERDRVIVVSGDRDMLQVVRDDPVEVRVLYLGRGMSKATLFGPAEV 179 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 A++Y +P RAGAAYAELAL+RGDPSDGLPGVPGVGEKTAATLLA+ GSL+ I+AAA+D Sbjct 180 ADQYAVPKERAGAAYAELALMRGDPSDGLPGVPGVGEKTAATLLAQFGSLEAIVAAANDP 239 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ M+K R K+LAA+ YI+AA+ VVRVATDAPVT+ST TD PL AA P + A+LA Sbjct 240 KSKMSKAYRKKMLAAADYIEAAEPVVRVATDAPVTMSTKTDELPLAAAHPRKVAQLAGDL 299 Query 376 GVESSIARLQKALDTL 391 GV SS+ RLQKALD L Sbjct 300 GVTSSVGRLQKALDAL 315 >gi|108799445|ref|YP_639642.1| 5'-3' exonuclease [Mycobacterium sp. MCS] gi|119868558|ref|YP_938510.1| 5'-3' exonuclease [Mycobacterium sp. KMS] gi|108769864|gb|ABG08586.1| 5'-3' exonuclease [Mycobacterium sp. MCS] gi|119694647|gb|ABL91720.1| 5'-3' exonuclease [Mycobacterium sp. KMS] Length=316 Score = 461 bits (1187), Expect = 7e-128, Method: Compositional matrix adjust. Identities = 233/316 (74%), Positives = 272/316 (87%), Gaps = 1/316 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + +PL+LLDGASMWFRS+F +PSSITAPDGRPVNAVRGF+D++A++I ++RP+RL VC D Sbjct 1 MSAPLLLLDGASMWFRSYFALPSSITAPDGRPVNAVRGFLDTVAMLIGRERPSRLVVCRD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 DWRPQ+RVDL+PSYKAHRVAEP+ G DVE VPDELTPQVDMIME+LDAFGI AGAP Sbjct 61 DDWRPQWRVDLVPSYKAHRVAEPQAAGT-DVEVVPDELTPQVDMIMEMLDAFGIPHAGAP 119 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G+EADDVLGTLA E RD VIVVSGDRD+LQVV DDPV VRVLYLGRG++KATLFGPAEV Sbjct 120 GYEADDVLGTLAVAEERDRVIVVSGDRDMLQVVRDDPVEVRVLYLGRGMSKATLFGPAEV 179 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 A++Y +P RAGAAYAELAL+RGDPSDGLPGVPGVGEKTAATLLA+ GSL+ I+AAA+D Sbjct 180 ADQYAVPKERAGAAYAELALMRGDPSDGLPGVPGVGEKTAATLLAQFGSLEAIVAAANDP 239 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 K+ M+K R K+LAA+ YI+AA+ VVRVATDAPVT+ST TD PL AA P + A+LA Sbjct 240 KSKMSKAYRKKMLAAADYIEAAEPVVRVATDAPVTMSTKTDELPLAAAHPRKVAQLAGDL 299 Query 376 GVESSIARLQKALDTL 391 GV SS+ RLQKALD L Sbjct 300 GVTSSVGRLQKALDAL 315 >gi|308403489|ref|ZP_07493848.2| hypothetical protein TMLG_03582 [Mycobacterium tuberculosis SUMu012] gi|308365714|gb|EFP54565.1| hypothetical protein TMLG_03582 [Mycobacterium tuberculosis SUMu012] Length=240 Score = 461 bits (1186), Expect = 9e-128, Method: Compositional matrix adjust. Identities = 240/259 (93%), Positives = 240/259 (93%), Gaps = 19/259 (7%) Query 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAPPRLRSP 60 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP Sbjct 1 MPAPDPMRGDPPHPAPPRLRSPLDPTSGDPLHPAPPRLRSPLDPTSGDPLHPAP------ 54 Query 61 LDPTSGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 120 PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV Sbjct 55 -------------PRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAV 101 Query 121 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 180 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI Sbjct 102 VITQQRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMI 161 Query 181 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 240 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL Sbjct 162 MELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYL 221 Query 241 GRGLAKATLFGPAEVAERY 259 GRGLAKATLFGPAEVAERY Sbjct 222 GRGLAKATLFGPAEVAERY 240 >gi|315444011|ref|YP_004076890.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Mycobacterium sp. Spyr1] gi|315262314|gb|ADT99055.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Mycobacterium sp. Spyr1] Length=324 Score = 454 bits (1167), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 230/315 (74%), Positives = 262/315 (84%), Gaps = 0/315 (0%) Query 77 RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 136 SPLVLLDGASMWFRS+FGVPSSITAPDGRPVNA+RGF+D+++ VI ++RP+RL VC D Sbjct 10 NSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVSTVIARERPHRLVVCRDD 69 Query 137 DWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 196 DWRPQ+RVDLIPSYKAHRV E P PDVEEVPDELTPQVDMIME+LDAFGIA AGA Sbjct 70 DWRPQWRVDLIPSYKAHRVLEENPADGPDVEEVPDELTPQVDMIMEILDAFGIATAGAAH 129 Query 197 FEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVA 256 +EADDVLGTLA E RDPV+VVSGDRDLLQ+V D+PVPVRVLYLG+GLAKA +GPAEVA Sbjct 130 YEADDVLGTLAAAEERDPVVVVSGDRDLLQLVRDEPVPVRVLYLGKGLAKAVKWGPAEVA 189 Query 257 ERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRK 316 + YG+P RAG+AY ELALLRGDPSDGLPGVPG+GEKTAATLLA+H SL+ I+AAA D Sbjct 190 DTYGVPLERAGSAYVELALLRGDPSDGLPGVPGIGEKTAATLLAQHNSLENIVAAAHDPA 249 Query 317 TTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFG 376 +T++K R KLLAAS YI+ A+ VVRVATDA + ST D PL A DP + ELA R+G Sbjct 250 STLSKAHRKKLLAASDYIEKAEPVVRVATDAELDWSTDGDALPLSARDPRKVVELAERYG 309 Query 377 VESSIARLQKALDTL 391 V SSI RLQ ALD L Sbjct 310 VSSSIGRLQAALDKL 324 >gi|145223684|ref|YP_001134362.1| 5'-3' exonuclease [Mycobacterium gilvum PYR-GCK] gi|145216170|gb|ABP45574.1| 5'-3' exonuclease [Mycobacterium gilvum PYR-GCK] Length=321 Score = 454 bits (1167), Expect = 2e-125, Method: Compositional matrix adjust. Identities = 230/315 (74%), Positives = 262/315 (84%), Gaps = 0/315 (0%) Query 77 RSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDL 136 SPLVLLDGASMWFRS+FGVPSSITAPDGRPVNA+RGF+D+++ VI ++RP+RL VC D Sbjct 7 NSPLVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVSTVIARERPHRLVVCRDD 66 Query 137 DWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPG 196 DWRPQ+RVDLIPSYKAHRV E P PDVEEVPDELTPQVDMIME+LDAFGIA AGA Sbjct 67 DWRPQWRVDLIPSYKAHRVLEENPADGPDVEEVPDELTPQVDMIMEILDAFGIATAGAAH 126 Query 197 FEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVA 256 +EADDVLGTLA E RDPV+VVSGDRDLLQ+V D+PVPVRVLYLG+GLAKA +GPAEVA Sbjct 127 YEADDVLGTLAAAEERDPVVVVSGDRDLLQLVRDEPVPVRVLYLGKGLAKAVKWGPAEVA 186 Query 257 ERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRK 316 + YG+P RAG+AY ELALLRGDPSDGLPGVPG+GEKTAATLLA+H SL+ I+AAA D Sbjct 187 DTYGVPLERAGSAYVELALLRGDPSDGLPGVPGIGEKTAATLLAQHNSLENIVAAAHDPA 246 Query 317 TTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFG 376 +T++K R KLLAAS YI+ A+ VVRVATDA + ST D PL A DP + ELA R+G Sbjct 247 STLSKAHRKKLLAASDYIEKAEPVVRVATDAELDWSTDGDALPLSARDPRKVVELAERYG 306 Query 377 VESSIARLQKALDTL 391 V SSI RLQ ALD L Sbjct 307 VSSSIGRLQAALDKL 321 >gi|120404410|ref|YP_954239.1| 5'-3' exonuclease [Mycobacterium vanbaalenii PYR-1] gi|119957228|gb|ABM14233.1| 5'-3' exonuclease [Mycobacterium vanbaalenii PYR-1] Length=323 Score = 453 bits (1165), Expect = 3e-125, Method: Compositional matrix adjust. Identities = 234/319 (74%), Positives = 263/319 (83%), Gaps = 4/319 (1%) Query 79 PLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDW 138 PLVLLDGASMWFRS+FGVPSSITAPDGRPVNA+RGF+D++A VIT++RP+RL VC D DW Sbjct 5 PLVLLDGASMWFRSYFGVPSSITAPDGRPVNALRGFLDAVATVITRERPHRLVVCRDDDW 64 Query 139 RPQFRVDLIPSYKAHRVAEPEPNGQP----DVEEVPDELTPQVDMIMELLDAFGIAMAGA 194 RPQ+RVDLIPSYKAHRVA P P DVEEVPD+LTPQVDMIME+LDAFGIA AGA Sbjct 65 RPQWRVDLIPSYKAHRVAVPAEEANPPTDVDVEEVPDDLTPQVDMIMEMLDAFGIATAGA 124 Query 195 PGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 254 EADDVLGTLA RE RDPV+VVSGDRDLLQ+V D+PVPVRVLYLGRGLA+AT +GP E Sbjct 125 QQCEADDVLGTLAGRETRDPVVVVSGDRDLLQLVRDEPVPVRVLYLGRGLARATTYGPVE 184 Query 255 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 314 V+E Y +P RAG AYAELALLRGDPSDGLPGVPG+GEKTAATLLA+HGSL+ I+AAA D Sbjct 185 VSETYNVPVDRAGPAYAELALLRGDPSDGLPGVPGIGEKTAATLLAQHGSLEAILAAAQD 244 Query 315 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATR 374 K+ +++ RTKLLAAS YI A VVRVATDA V ST D PL A P + AELA R Sbjct 245 PKSKLSRAHRTKLLAASDYIAKAGPVVRVATDADVNFSTDDDALPLAARHPRKVAELAER 304 Query 375 FGVESSIARLQKALDTLPG 393 +GV SS+ RLQ ALD LPG Sbjct 305 YGVSSSLGRLQTALDKLPG 323 >gi|333990752|ref|YP_004523366.1| 5'-3' exonuclease [Mycobacterium sp. JDM601] gi|333486720|gb|AEF36112.1| 5'-3' exonuclease [Mycobacterium sp. JDM601] Length=308 Score = 444 bits (1141), Expect = 1e-122, Method: Compositional matrix adjust. Identities = 240/307 (79%), Positives = 262/307 (86%), Gaps = 2/307 (0%) Query 88 MWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRPQFRVDLI 147 MWFRS+FGVPSSITAPDGRPVNAVRGF DS+A +IT+ P RLAVCLDLDWRPQ+RVDL+ Sbjct 1 MWFRSYFGVPSSITAPDGRPVNAVRGFFDSVATLITRHEPGRLAVCLDLDWRPQWRVDLV 60 Query 148 PSYKAHRVAEPEPNGQ--PDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFEADDVLGT 205 PSYKAHRVA+ P+ D+EEVPDEL+PQVDMI+ELL AFGIA AGAP EADDVLGT Sbjct 61 PSYKAHRVAQEAPDDADATDIEEVPDELSPQVDMIIELLAAFGIATAGAPDHEADDVLGT 120 Query 206 LATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERYGLPAHR 265 LA ERRDPVIVVSGDRDLLQVVA+ PVPV VLYLGRGLA+ATLFGPAEVAERYGLPA R Sbjct 121 LAAAERRDPVIVVSGDRDLLQVVAEQPVPVSVLYLGRGLARATLFGPAEVAERYGLPAQR 180 Query 266 AGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTMAKGLRT 325 AGAAYAE+ALLRGDPSDGLPGVPGVGEKTA LLA++GSL ++AAA D + MAKG+R Sbjct 181 AGAAYAEMALLRGDPSDGLPGVPGVGEKTAVGLLAQYGSLAAVLAAAADPASAMAKGVRA 240 Query 326 KLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVESSIARLQ 385 KL AA YI AA VVRVATDA VTLSTP+D P VAADP R AELA R GV SSIARLQ Sbjct 241 KLQAARDYIAAAGPVVRVATDALVTLSTPSDTLPRVAADPARVAELADRLGVGSSIARLQ 300 Query 386 KALDTLP 392 +ALDTLP Sbjct 301 RALDTLP 307 >gi|169629277|ref|YP_001702926.1| 5'-3' exonuclease [Mycobacterium abscessus ATCC 19977] gi|169241244|emb|CAM62272.1| Probable 5'-3' exonuclease [Mycobacterium abscessus] Length=337 Score = 442 bits (1137), Expect = 5e-122, Method: Compositional matrix adjust. Identities = 234/338 (70%), Positives = 266/338 (79%), Gaps = 13/338 (3%) Query 65 SGDPLHPAPPRLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQ 124 S DP P R P++LLDGAS+WFRS+FGVP SIT+PDGRPVNAVRGF+D+++ +IT Sbjct 2 SEDPARTVPAR---PVLLLDGASLWFRSYFGVPDSITSPDGRPVNAVRGFLDTVSQLITL 58 Query 125 QRPNRLAVCLDLDWRPQFRVDLIPSYKAHRVAEPEP-NGQP---------DVEEVPDELT 174 RP+RLAVCLDLDWRP +RV IPSYKAHRV +P G+P D+EEVPDELT Sbjct 59 YRPHRLAVCLDLDWRPAWRVAAIPSYKAHRVVTDDPLAGRPSDTVGAQTVDIEEVPDELT 118 Query 175 PQVDMIMELLDAFGIAMAGAPGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVP 234 PQVDMI ++LDAFGIA AGA GFEADDVLGTLA ERRDPVIVVSGDRDLLQVVAD PVP Sbjct 119 PQVDMIADILDAFGIASAGAAGFEADDVLGTLAANERRDPVIVVSGDRDLLQVVADVPVP 178 Query 235 VRVLYLGRGLAKATLFGPAEVAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKT 294 VRV Y+GRG AKATLFGP EVAE+YG+P RAGAAYAELALLRGDPSDGLPGVPGVGEKT Sbjct 179 VRVFYMGRGFAKATLFGPTEVAEQYGVPLARAGAAYAELALLRGDPSDGLPGVPGVGEKT 238 Query 295 AATLLARHGSLDQIMAAADDRKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTP 354 AA LLA GSLD I+ AADD K+ +AK +R KL AA+ Y+ AA+ VVRVA DAPV + Sbjct 239 AAKLLAEFGSLDGILTAADDPKSGLAKAVRAKLQAATVYMAAAEPVVRVAVDAPVIVDRD 298 Query 355 TDRFPLVAADPERTAELATRFGVESSIARLQKALDTLP 392 +D PL A DP R AEL G+ S++ RLQKALD LP Sbjct 299 SDALPLTARDPRRVAELGAELGIGSAVTRLQKALDGLP 336 >gi|262202398|ref|YP_003273606.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing protein [Gordonia bronchialis DSM 43247] gi|262085745|gb|ACY21713.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Gordonia bronchialis DSM 43247] Length=347 Score = 387 bits (993), Expect = 2e-105, Method: Compositional matrix adjust. Identities = 203/320 (64%), Positives = 243/320 (76%), Gaps = 11/320 (3%) Query 80 LVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWR 139 L+LLDGAS+WFRSF+ +P +TAPDGRPVNAVRGF+D++A ++T++RP RL VCLDLDWR Sbjct 21 LMLLDGASLWFRSFYALPEKMTAPDGRPVNAVRGFLDTIANLVTRERPTRLVVCLDLDWR 80 Query 140 PQFRVDLIPSYKAHRVAEPEPNG----QPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 P FR DLIPSYKAHRVA P +G + DVEEVPD LTPQVDMIM +L+ GIA +GA Sbjct 81 PSFRTDLIPSYKAHRVATPAASGTGDSEIDVEEVPDTLTPQVDMIMRVLECAGIARSGAV 140 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G EADDV+GTLA E +DPV+VVSGDRDLLQVVADDPVPVRVLY+GRGLAKA + GP EV Sbjct 141 GCEADDVIGTLAYEEAQDPVVVVSGDRDLLQVVADDPVPVRVLYVGRGLAKAEMMGPDEV 200 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 A RYG+PA RAG AYAE+++LRGDPSDGLPGVPGVGEKTAATL++ GSLD + AAA D Sbjct 201 AARYGVPADRAGMAYAEMSMLRGDPSDGLPGVPGVGEKTAATLISEFGSLDNLEAAAADP 260 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTP-------TDRFPLVAADPERT 368 +++ R +LA++ Y+ AA VV V TDA S TDR P ADP+ Sbjct 261 SSSVPTRARKAILASADYLDAARTVVLVRTDADTIDSWTADEDAAGTDRLPAQPADPDGL 320 Query 369 AELATRFGVESSIARLQKAL 388 A L G+ +S+ARL KAL Sbjct 321 ARLIEELGIGTSVARLAKAL 340 >gi|333919689|ref|YP_004493270.1| 5'-3' exonuclease [Amycolicicoccus subflavus DQS3-9A1] gi|333481910|gb|AEF40470.1| 5'-3' exonuclease [Amycolicicoccus subflavus DQS3-9A1] Length=320 Score = 386 bits (992), Expect = 3e-105, Method: Compositional matrix adjust. Identities = 214/313 (69%), Positives = 250/313 (80%), Gaps = 4/313 (1%) Query 78 SPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLD 137 +P++LLDGA +WFR+F+G+P S+TAPDGRPVNAVRGF D +A ++ RP RL VCLD D Sbjct 5 APVMLLDGAGLWFRAFYGLPESLTAPDGRPVNAVRGFTDMVAALVRAHRPRRLVVCLDND 64 Query 138 WRPQFRVDLIPSYKAHRVAEP--EPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 WRP FRV IPSYKAHRV E EP G+ DVEEVPD LTPQVDMI+++LDAFGIA AGA Sbjct 65 WRPDFRVAAIPSYKAHRVEEAAREP-GEVDVEEVPDSLTPQVDMILDVLDAFGIATAGAD 123 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G+EADDVLGTLA RE DPVIVVSGDRDLLQVV D+PVPVRVLY+GRGLAKA LFGPAEV Sbjct 124 GYEADDVLGTLAARETTDPVIVVSGDRDLLQVVRDEPVPVRVLYVGRGLAKAELFGPAEV 183 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 A +YG+PA RAGAAYAELALLRGDPSDGLPGV G+GEKTA+ LL GSL+ ++AAA D Sbjct 184 ARKYGVPAERAGAAYAELALLRGDPSDGLPGVAGIGEKTASKLLLEFGSLEALVAAAADP 243 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 +T+A G+R K+ AA+ YI AA VVRVATDAPV S D P +D R AE+A + Sbjct 244 SSTLATGVRAKIGAAAEYIAAAVPVVRVATDAPVAFSR-EDALPSAPSDRRRVAEVAQDY 302 Query 376 GVESSIARLQKAL 388 G+E++IARL AL Sbjct 303 GIENAIARLTSAL 315 >gi|325676816|ref|ZP_08156489.1| 5'-3' exonuclease [Rhodococcus equi ATCC 33707] gi|325552364|gb|EGD22053.1| 5'-3' exonuclease [Rhodococcus equi ATCC 33707] Length=317 Score = 376 bits (965), Expect = 4e-102, Method: Compositional matrix adjust. Identities = 216/316 (69%), Positives = 248/316 (79%), Gaps = 4/316 (1%) Query 75 RLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCL 134 R+ PL+LLDGAS+WFR+F+ +P S+TAPDGRPVNAVRGF D +A +IT+ +P+RLAVCL Sbjct 3 RMSGPLLLLDGASLWFRAFYALPESMTAPDGRPVNAVRGFTDMVAALITRTQPSRLAVCL 62 Query 135 DLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194 DLDWRPQFRVD +PSYKAHRVAE EEVPD LTPQVDMIM++LDA GIA AGA Sbjct 63 DLDWRPQFRVDAVPSYKAHRVAE---GSDGSAEEVPDTLTPQVDMIMDVLDAAGIATAGA 119 Query 195 PGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 254 G EADDVLGTLA +E+ D V+VVSGDRDLLQVVADDPV VRVLY+GRGLAKA LFGP E Sbjct 120 AGLEADDVLGTLAAQEKTDTVVVVSGDRDLLQVVADDPVAVRVLYVGRGLAKAELFGPEE 179 Query 255 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 314 VA +YG+PA RAGAAYAELALLRGD SDGLPGV GVGEKTA+TLL RHGSL + AAA D Sbjct 180 VAAKYGVPADRAGAAYAELALLRGDSSDGLPGVKGVGEKTASTLLLRHGSLRDLRAAAAD 239 Query 315 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATR 374 +AKG+R KL AA+ Y+ AA VVRV TDA V LS P D P V AD R ++A Sbjct 240 PAGDVAKGIRAKLDAAADYLDAALPVVRVVTDADVRLSRP-DVLPRVPADSARLDKVAAE 298 Query 375 FGVESSIARLQKALDT 390 G+E S+ARL A+ T Sbjct 299 LGIERSVARLLTAMAT 314 >gi|312139733|ref|YP_004007069.1| 5'-3' exonuclease [Rhodococcus equi 103S] gi|311889072|emb|CBH48385.1| 5'-3' exonuclease [Rhodococcus equi 103S] Length=314 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 215/315 (69%), Positives = 247/315 (79%), Gaps = 4/315 (1%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + PL+LLDGAS+WFR+F+ +P S+TAPDGRPVNAVRGF D +A +IT+ +P+RLAVCLD Sbjct 1 MSGPLLLLDGASLWFRAFYALPESMTAPDGRPVNAVRGFTDMVAALITRTQPSRLAVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVD +PSYKAHRVAE EEVPD LTPQVDMIM++LDA GIA AGA Sbjct 61 LDWRPQFRVDAVPSYKAHRVAE---GSDGSAEEVPDTLTPQVDMIMDVLDAAGIATAGAA 117 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G EADDVLGTLA +E+ D V+VVSGDRDLLQVVADDPV VRVLY+GRGLAKA LFGP EV Sbjct 118 GLEADDVLGTLAAQEKTDTVVVVSGDRDLLQVVADDPVAVRVLYVGRGLAKAELFGPEEV 177 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 A +YG+PA RAGAAYAELALLRGD SDGLPGV GVGEKTA+TLL RHGSL + AAA D Sbjct 178 AAKYGVPADRAGAAYAELALLRGDSSDGLPGVKGVGEKTASTLLLRHGSLRDLRAAAADP 237 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 +AKG+R KL AA+ Y+ AA VVRV TDA V LS P D P V AD R ++A Sbjct 238 AGDVAKGIRAKLDAAADYLDAALPVVRVVTDADVRLSRP-DVLPGVPADSARLDKVAAEL 296 Query 376 GVESSIARLQKALDT 390 G+E S+ARL A+ T Sbjct 297 GIERSVARLLTAMAT 311 >gi|343927928|ref|ZP_08767394.1| putative 5'-3' exonuclease [Gordonia alkanivorans NBRC 16433] gi|343762151|dbj|GAA14320.1| putative 5'-3' exonuclease [Gordonia alkanivorans NBRC 16433] Length=318 Score = 372 bits (954), Expect = 8e-101, Method: Compositional matrix adjust. Identities = 193/314 (62%), Positives = 233/314 (75%), Gaps = 7/314 (2%) Query 81 VLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 140 +LLDGAS+WFRSF+ +P +T+PDGRPVNAVRGFID++A ++T++ P RL VCLDLDWRP Sbjct 1 MLLDGASLWFRSFYALPEKMTSPDGRPVNAVRGFIDTIANLVTREHPTRLVVCLDLDWRP 60 Query 141 QFRVDLIPSYKAHRVA------EPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194 +FR LIP+YKAHRVA + DVEEVPD LTPQVDMIM++L A GIA +GA Sbjct 61 EFRTALIPTYKAHRVAVEDGATDATGTETIDVEEVPDTLTPQVDMIMDVLAAAGIATSGA 120 Query 195 PGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 254 G EADDV+GTLA E PV+VVSGDRDLLQVV+DDPVPVRVLY+GRGLAKA + GP E Sbjct 121 VGCEADDVIGTLAWEEAEHPVVVVSGDRDLLQVVSDDPVPVRVLYVGRGLAKAEMMGPVE 180 Query 255 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 314 V E+YG+PA RAG YAE+++LRGDPSDGLPGVPG+GEKTAA L++ +GSLD + AAA D Sbjct 181 VGEKYGVPADRAGIGYAEMSMLRGDPSDGLPGVPGIGEKTAAKLISEYGSLDALEAAARD 240 Query 315 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATR 374 + + R LLAA Y++AA VV V TDA S P D P ADPE A L Sbjct 241 SSSKVPTRARKALLAAEDYLEAARTVVSVRTDAETIDSGP-DLLPSEPADPEALAALVEE 299 Query 375 FGVESSIARLQKAL 388 G+ +S+ RL KAL Sbjct 300 LGIGASVGRLSKAL 313 >gi|257056192|ref|YP_003134024.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Saccharomonospora viridis DSM 43017] gi|256586064|gb|ACU97197.1| 5'-3' exonuclease (including N-terminal domain of PolI) [Saccharomonospora viridis DSM 43017] Length=320 Score = 365 bits (936), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 196/318 (62%), Positives = 236/318 (75%), Gaps = 2/318 (0%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + +PLVLLD AS++FRSFF +P S+TAPDG PVNAVRGF D++A V+T +RP RL CLD Sbjct 1 MTAPLVLLDAASLYFRSFFALPESLTAPDGTPVNAVRGFADTVARVLTDRRPARLVACLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 DWRP+FRV +PSYKAHRVAE G PDVEEVPD LTPQV +I+ELL+A GIA A A Sbjct 61 ADWRPEFRVRALPSYKAHRVAESSEEG-PDVEEVPDTLTPQVPIILELLEAVGIATAEAE 119 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 GFEADDV+GTLA RE + PV VV+GDRDL Q+V +P PV V+Y+G+G AKA + GPAEV Sbjct 120 GFEADDVIGTLAAREAQLPVEVVTGDRDLFQLVRSEPSPVSVIYVGKGWAKAEVLGPAEV 179 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 A RYGLPA AGAAYA++A+LRGDPSDGLPGVPG+GEKTAA L+ R GSL+ ++AAA D Sbjct 180 AARYGLPAEHAGAAYADMAMLRGDPSDGLPGVPGIGEKTAAKLVTRFGSLEALVAAARDG 239 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 + RTKL+ +S Y+ AA VVRVATDAPV + D P PER AELA R+ Sbjct 240 HPDVPPRARTKLVESSDYLAAAPLVVRVATDAPV-IGVDDDHVPHEPVAPERVAELAERY 298 Query 376 GVESSIARLQKALDTLPG 393 + S+ RL AL G Sbjct 299 NLGGSVTRLLAALSGQSG 316 >gi|326382291|ref|ZP_08203983.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326199021|gb|EGD56203.1| 5'-3' exonuclease [Gordonia neofelifaecis NRRL B-59395] Length=313 Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 188/314 (60%), Positives = 228/314 (73%), Gaps = 4/314 (1%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + ++LLDGAS+WFRSF+ +P +TAPDGRPVNAVRGF+D++A ++T RP RL VCLD Sbjct 3 MTGSVMLLDGASLWFRSFYALPEKMTAPDGRPVNAVRGFVDTIAALVTTHRPTRLVVCLD 62 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRP FR +LIPSYKAHRVA E +G EEVPD LTPQVDMI+++L GIA +GA Sbjct 63 LDWRPAFRTELIPSYKAHRVA-AEGDGA---EEVPDTLTPQVDMILDVLRCAGIATSGAR 118 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G EADDV+GTLA E D V+VVSGDRDLLQVVADDPVPVRVLY+GRGLAKA L GP EV Sbjct 119 GCEADDVIGTLAFHEAVDDVLVVSGDRDLLQVVADDPVPVRVLYVGRGLAKAELMGPEEV 178 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 + +YG+P RAG AYAE+++LRGDPSDGLPGVPG+GEKTAA LL + SLD + +AA D Sbjct 179 SAKYGVPVDRAGVAYAEMSILRGDPSDGLPGVPGIGEKTAAKLLTQFASLDALESAAGDP 238 Query 316 KTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRF 375 + R +L + Y+ AA VV V TDA ST +D P AD L Sbjct 239 TAPVPTRARNSILNSVEYLAAARTVVAVRTDADTIDSTDSDALPPAPADRAGLDRLVDEL 298 Query 376 GVESSIARLQKALD 389 G+++SI RL KAL+ Sbjct 299 GIDASIGRLAKALE 312 >gi|302527225|ref|ZP_07279567.1| DNA polymerase I [Streptomyces sp. AA4] gi|302436120|gb|EFL07936.1| DNA polymerase I [Streptomyces sp. AA4] Length=316 Score = 346 bits (888), Expect = 4e-93, Method: Compositional matrix adjust. Identities = 180/314 (58%), Positives = 232/314 (74%), Gaps = 2/314 (0%) Query 75 RLRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCL 134 R+ PL LLD AS++FRSF+ +P S+TAPDG PVNAVRGF D++A ++T +RP+RL CL Sbjct 2 RVTGPLALLDSASLYFRSFYALPDSMTAPDGTPVNAVRGFTDTIARILTDRRPSRLVACL 61 Query 135 DLDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGA 194 D DWRP+FR DL+PSYKAHRVA P +G DVEEVPD LTPQV +I+E+L+AFG A+A A Sbjct 62 DADWRPKFRTDLLPSYKAHRVAVP-GDGGADVEEVPDTLTPQVPIILEVLEAFGFAVAEA 120 Query 195 PGFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAE 254 G+EADDV+G LATRE+ PV V++GDRDL Q+V ++P P V+Y+G+G AKA + G E Sbjct 121 DGYEADDVIGALATREKDAPVEVITGDRDLFQLVREEPTPTSVVYVGKGWAKAEVLGQRE 180 Query 255 VAERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD 314 +AE+YG+PA AG AYA++A LRGDPSDGLPGV G+GEKTAA L+ GSL++++AAA Sbjct 181 IAEKYGVPAEHAGPAYADMAALRGDPSDGLPGVAGIGEKTAAKLITEFGSLEELVAAASA 240 Query 315 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATR 374 + + R +L A+ Y+ A VVRVA DAPV S P D P ADP+R AELA R Sbjct 241 GDSRVPLKTRLRLSDAADYLAVAPTVVRVAVDAPVVQSGP-DAVPSAPADPDRVAELAER 299 Query 375 FGVESSIARLQKAL 388 + + S+ RL AL Sbjct 300 WNLGRSVERLLAAL 313 >gi|296139879|ref|YP_003647122.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing protein [Tsukamurella paurometabola DSM 20162] gi|296028013|gb|ADG78783.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Tsukamurella paurometabola DSM 20162] Length=320 Score = 345 bits (885), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 183/310 (60%), Positives = 222/310 (72%), Gaps = 4/310 (1%) Query 79 PLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDW 138 PL+LLD A +WFR+++ +P + A DGR VNA+RGF+D + +I RP RL CLDLDW Sbjct 13 PLMLLDSAGLWFRAYYAIPDKVKAADGRSVNALRGFLDMTSQLIATHRPGRLVACLDLDW 72 Query 139 RPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAPGFE 198 RP FRVDL+P+YK HRVAE +G EEVPD L PQVDMI+E+LDA GIA AGA G E Sbjct 73 RPAFRVDLLPTYKTHRVAEDAEDG---AEEVPDTLAPQVDMILEVLDAVGIATAGAEGLE 129 Query 199 ADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAER 258 ADDVLGTLA +E+ DPVIVVSGDRDLLQV D P PV+ LY+GRG+AKA +FGPAEVAE+ Sbjct 130 ADDVLGTLAAQEQVDPVIVVSGDRDLLQVADDTPPPVKCLYIGRGIAKAEMFGPAEVAEK 189 Query 259 YGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTT 318 YGLPA RAG AYAELALLRGDPSDGLPGVPG+GEKTA+ LL ++GSL I AA + + Sbjct 190 YGLPADRAGEAYAELALLRGDPSDGLPGVPGIGEKTASKLLLQYGSLAAIRDAAAQQPSP 249 Query 319 MAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVE 378 + ++ +S Y+ AA VV V A V +S P D P DP+R AELA + Sbjct 250 LPARAAASIVNSSDYLDAAWDVVWVRRAADVAVSGP-DAVPAEPRDPQRLAELAVELRIG 308 Query 379 SSIARLQKAL 388 + + RL AL Sbjct 309 AQVERLLAAL 318 >gi|296394174|ref|YP_003659058.1| 5'-3' exonuclease, N-terminal resolvase-like domain-containing protein [Segniliparus rotundus DSM 44985] gi|296181321|gb|ADG98227.1| 5'-3' exonuclease, N-terminal resolvase-like domain protein [Segniliparus rotundus DSM 44985] Length=309 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 188/309 (61%), Positives = 218/309 (71%), Gaps = 3/309 (0%) Query 81 VLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLDLDWRP 140 +L+D A +WFR+F+ +P SITAPDG PVNAVRGF D +A ++ + RP RLAVCLDLDWRP Sbjct 1 MLVDAAGLWFRAFYALPESITAPDGSPVNAVRGFCDMLAALLERDRPKRLAVCLDLDWRP 60 Query 141 QFRVDLIPSYKAHRVAEPEPNGQPDVE-EVPDELTPQVDMIMELLDAFGIAMAGAPGFEA 199 +FRVDL+P YKA RVA E P P L PQVDMI+ LL A G+A GA GFEA Sbjct 61 KFRVDLLPEYKAQRVAPGEDLAAPGAAASEPASLAPQVDMILALLGAAGVATVGAEGFEA 120 Query 200 DDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEVAERY 259 DDV+GTLA RERRD V+VV+GDRDLLQVVAD+PVPVRV Y+GRG+AK+ L GPAEVAERY Sbjct 121 DDVIGTLAARERRDDVVVVTGDRDLLQVVADEPVPVRVRYIGRGVAKSELLGPAEVAERY 180 Query 260 GLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDRKTTM 319 GLP RAGAAYAELA+LRGDPSDGLPGV GVGEKTAA L++ GSL + AA + Sbjct 181 GLPPERAGAAYAELAVLRGDPSDGLPGVAGVGEKTAAKLISAFGSLAGTLEAAKNGDVAP 240 Query 320 AKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATRFGVES 379 K + LLAA YI+ A RVV + D PV P AD R A LA +FG S Sbjct 241 PKAQKA-LLAAEDYIRRAARVVFIRDDVPVQWDRDDAITPRT-ADLARCARLAEQFGTAS 298 Query 380 SIARLQKAL 388 S RL AL Sbjct 299 SAQRLLTAL 307 >gi|256376383|ref|YP_003100043.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827] gi|255920686|gb|ACU36197.1| 5'-3' exonuclease [Actinosynnema mirum DSM 43827] Length=349 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 182/315 (58%), Positives = 221/315 (71%), Gaps = 7/315 (2%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + SPLVL+D AS++FRSF+ +P S+TAPDG PVNAVRGF+D++A ++ + +RL CLD Sbjct 35 VSSPLVLMDAASLYFRSFYALPESMTAPDGTPVNAVRGFVDTIAKIVNDRNASRLVACLD 94 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 DWRP+FRV +PSYKAHRVAE D EEVPD LTPQV +I+++LDA GIA A AP Sbjct 95 ADWRPEFRVAALPSYKAHRVAE-----SGDAEEVPDTLTPQVPIILDVLDAVGIATAEAP 149 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G+EADDV+GTLA RE +PV VV+GDRDL QVV P P VLYLGRG AKA L GPAE+ Sbjct 150 GYEADDVIGTLAARETTNPVEVVTGDRDLFQVVRTTPTPAGVLYLGRGWAKAELVGPAEL 209 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADD- 314 A +Y LP AG AYA +A+LRGDPSDGLPGV G+GEKTAA L+ GSL+ ++AA D Sbjct 210 AAKYALPEEDAGRAYAGMAVLRGDPSDGLPGVAGIGEKTAAKLITEFGSLEALLAAVHDG 269 Query 315 RKTTMAKGLRTKLLAASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELATR 374 R + R L+AA Y+ A VV VA DAPVT D P ADP R EL R Sbjct 270 RDRKLTTKARNALIAAEDYLAVAPTVVNVALDAPVT-QDRDDTLPTTPADPARLTELTKR 328 Query 375 FGVESSIARLQKALD 389 +G+ SSI RL AL+ Sbjct 329 WGLGSSIPRLVTALE 343 >gi|229493526|ref|ZP_04387311.1| 5-3 exonuclease [Rhodococcus erythropolis SK121] gi|229319487|gb|EEN85323.1| 5-3 exonuclease [Rhodococcus erythropolis SK121] Length=321 Score = 338 bits (867), Expect = 9e-91, Method: Compositional matrix adjust. Identities = 195/307 (64%), Positives = 229/307 (75%), Gaps = 6/307 (1%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + PL+LLDGAS+WFR+F+ +P S PDGRPVNAVRGF D +A +IT+ +P+RLAVCLD Sbjct 1 MSGPLLLLDGASLWFRAFYALPESFVDPDGRPVNAVRGFTDMVASLITKHQPSRLAVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVD +P+YKAHRV E EEVPD LTPQVDMIM++L A GIA AGA Sbjct 61 LDWRPQFRVDAVPTYKAHRVEEGSDGAS---EEVPDTLTPQVDMIMDVLAAAGIATAGAV 117 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G EADDVLGTLA ER D +VVSGDRDLLQVV D+ VPVRVLY+GRGL+KA LFGP EV Sbjct 118 GLEADDVLGTLAATEREDLTVVVSGDRDLLQVVTDEYVPVRVLYVGRGLSKAELFGPVEV 177 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AE+YG+P RAG AYAELA+LRGD SDGLPG+ GVGEKTA+TL+ R+GSL + AAA D Sbjct 178 AEKYGVPGDRAGEAYAELAVLRGDASDGLPGIKGVGEKTASTLMLRYGSLAGLRAAAADP 237 Query 316 KTTMAKGLRTKLLA--ASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELAT 373 ++ MAKG+R KL + A AY+ AA VVRV DA V S DR P DP R E+A Sbjct 238 ESDMAKGIRAKLTSPEAMAYLDAALPVVRVVRDADVQFSK-DDRLPATPVDPARLEEVAA 296 Query 374 RFGVESS 380 +E S Sbjct 297 SLNIERS 303 >gi|226306651|ref|YP_002766611.1| 5'-3' exonuclease [Rhodococcus erythropolis PR4] gi|226185768|dbj|BAH33872.1| probable 5'-3' exonuclease [Rhodococcus erythropolis PR4] Length=321 Score = 334 bits (857), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 193/307 (63%), Positives = 230/307 (75%), Gaps = 6/307 (1%) Query 76 LRSPLVLLDGASMWFRSFFGVPSSITAPDGRPVNAVRGFIDSMAVVITQQRPNRLAVCLD 135 + PL+LLDGAS+WFR+F+ +P S PDGRPVNAVRGF D +A +IT+ +P+RLAVCLD Sbjct 1 MSGPLLLLDGASLWFRAFYALPESFVDPDGRPVNAVRGFTDMVASLITKHQPSRLAVCLD 60 Query 136 LDWRPQFRVDLIPSYKAHRVAEPEPNGQPDVEEVPDELTPQVDMIMELLDAFGIAMAGAP 195 LDWRPQFRVD +P+YKAHRV E EEVPD LTPQVDMIM++L A GIA AGA Sbjct 61 LDWRPQFRVDAVPTYKAHRVEEGSDGSS---EEVPDTLTPQVDMIMDVLAAAGIATAGAV 117 Query 196 GFEADDVLGTLATRERRDPVIVVSGDRDLLQVVADDPVPVRVLYLGRGLAKATLFGPAEV 255 G EADDVLGTLA ER D +VVSGDRDLLQVV D+ VPVRVLY+GRGL++A LFGP EV Sbjct 118 GLEADDVLGTLAATEREDLTVVVSGDRDLLQVVTDEYVPVRVLYVGRGLSRAELFGPVEV 177 Query 256 AERYGLPAHRAGAAYAELALLRGDPSDGLPGVPGVGEKTAATLLARHGSLDQIMAAADDR 315 AE+YG+P RAG AYAELA+LRGD SDGLPG+ GVGEKTA+TL+ R+GSL + AAA D Sbjct 178 AEKYGVPGDRAGEAYAELAVLRGDASDGLPGIKGVGEKTASTLMLRYGSLAGLRAAAADP 237 Query 316 KTTMAKGLRTKLLA--ASAYIKAADRVVRVATDAPVTLSTPTDRFPLVAADPERTAELAT 373 ++ MAKG+R KL + A A++ AA VVRV DA V S D+ P ADP R E+A Sbjct 238 ESDMAKGIRAKLTSPEAIAHLDAALPVVRVVRDADVQFSK-DDQLPATPADPARFEEVAA 296 Query 374 RFGVESS 380 +E S Sbjct 297 SLNIERS 303 Lambda K H 0.318 0.137 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 767373824232 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40