BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2092c Length=906 Score E Sequences producing significant alignments: (Bits) Value gi|15609229|ref|NP_216608.1| ATP-dependent DNA helicase HelY [My... 1819 0.0 gi|306968223|ref|ZP_07480884.1| ATP-dependent DNA helicase helY ... 1818 0.0 gi|31793275|ref|NP_855768.1| ATP-dependent DNA helicase HelY [My... 1817 0.0 gi|289750687|ref|ZP_06510065.1| ATP-dependent DNA helicase helY ... 1816 0.0 gi|289574773|ref|ZP_06455000.1| ATP-dependent DNA helicase helY ... 1815 0.0 gi|340627105|ref|YP_004745557.1| putative ATP-dependent DNA heli... 1813 0.0 gi|254819635|ref|ZP_05224636.1| ATP-dependent DNA helicase HelY ... 1530 0.0 gi|296165173|ref|ZP_06847721.1| ATP-dependent DNA helicase HelY ... 1512 0.0 gi|254775080|ref|ZP_05216596.1| HelY [Mycobacterium avium subsp.... 1511 0.0 gi|342859796|ref|ZP_08716449.1| ATP-dependent DNA helicase HelY ... 1502 0.0 gi|240172773|ref|ZP_04751432.1| ATP-dependent DNA helicase HelY ... 1481 0.0 gi|15827694|ref|NP_301957.1| Ski2 subfamily helicase [Mycobacter... 1468 0.0 gi|183983077|ref|YP_001851368.1| ATP-dependent DNA helicase HelY... 1464 0.0 gi|118617834|ref|YP_906166.1| ATP-dependent DNA helicase HelY [M... 1457 0.0 gi|108799443|ref|YP_639640.1| DEAD/DEAH box helicase-like protei... 1404 0.0 gi|126435097|ref|YP_001070788.1| DEAD/DEAH box helicase domain-c... 1403 0.0 gi|118470951|ref|YP_888176.1| DEAD/DEAH box helicase [Mycobacter... 1386 0.0 gi|289570205|ref|ZP_06450432.1| superfamily II RNA helicase [Myc... 1356 0.0 gi|336462033|gb|EGO40881.1| superfamily II RNA helicase [Mycobac... 1346 0.0 gi|41407926|ref|NP_960762.1| HelY [Mycobacterium avium subsp. pa... 1345 0.0 gi|333990754|ref|YP_004523368.1| ATP-dependent DNA helicase HelY... 1333 0.0 gi|120404412|ref|YP_954241.1| DEAD/DEAH box helicase domain-cont... 1318 0.0 gi|145223682|ref|YP_001134360.1| DEAD/DEAH box helicase domain-c... 1290 0.0 gi|315444009|ref|YP_004076888.1| superfamily II RNA helicase [My... 1287 0.0 gi|169629275|ref|YP_001702924.1| ATP-dependent DNA helicase HelY... 1213 0.0 gi|325676819|ref|ZP_08156492.1| DEAD/DEAH box family ATP-depende... 1083 0.0 gi|54025131|ref|YP_119373.1| putative ATP-dependent RNA helicase... 1083 0.0 gi|312139730|ref|YP_004007066.1| dead/deah box helicase [Rhodoco... 1081 0.0 gi|226359987|ref|YP_002777765.1| helicase [Rhodococcus opacus B4... 1080 0.0 gi|111017854|ref|YP_700826.1| ATP-dependent helicase [Rhodococcu... 1080 0.0 gi|226306653|ref|YP_002766613.1| helicase [Rhodococcus erythropo... 1073 0.0 gi|229493571|ref|ZP_04387356.1| conserved hypothetical protein [... 1072 0.0 gi|257056196|ref|YP_003134028.1| superfamily II RNA helicase [Sa... 995 0.0 gi|296139877|ref|YP_003647120.1| DEAD/DEAH box helicase [Tsukamu... 993 0.0 gi|333919686|ref|YP_004493267.1| putative helicase [Amycolicicoc... 992 0.0 gi|134098834|ref|YP_001104495.1| putative ATP-dependent RNA heli... 973 0.0 gi|331697089|ref|YP_004333328.1| DEAD/DEAH box helicase domain-c... 955 0.0 gi|302527220|ref|ZP_07279562.1| DEAD/DEAH box helicase domain-co... 950 0.0 gi|330468496|ref|YP_004406239.1| dsh domain-containing protein [... 927 0.0 gi|300786755|ref|YP_003767046.1| ATP-dependent RNA helicase HelY... 926 0.0 gi|302867438|ref|YP_003836075.1| DSH domain-containing protein [... 924 0.0 gi|238059066|ref|ZP_04603775.1| DEAD/DEAH box helicase domain-co... 922 0.0 gi|145594787|ref|YP_001159084.1| DSH domain-containing protein [... 920 0.0 gi|159037970|ref|YP_001537223.1| DEAD/DEAH box helicase domain-c... 914 0.0 gi|284991142|ref|YP_003409696.1| DEAD/DEAH box helicase domain-c... 905 0.0 gi|291440653|ref|ZP_06580043.1| helicase [Streptomyces ghanaensi... 896 0.0 gi|289772656|ref|ZP_06532034.1| helicase [Streptomyces lividans ... 894 0.0 gi|262202396|ref|YP_003273604.1| DEAD/DEAH box helicase [Gordoni... 894 0.0 gi|29833237|ref|NP_827871.1| ATP-dependent RNA helicase [Strepto... 894 0.0 gi|21220127|ref|NP_625906.1| helicase [Streptomyces coelicolor A... 893 0.0 >gi|15609229|ref|NP_216608.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Rv] gi|15841583|ref|NP_336620.1| DEAD-box ATP dependent DNA helicase [Mycobacterium tuberculosis CDC1551] gi|148661907|ref|YP_001283430.1| ATP-dependent DNA helicase HelY [Mycobacterium tuberculosis H37Ra] 59 more sequence titles Length=906 Score = 1819 bits (4712), Expect = 0.0, Method: Compositional matrix adjust. Identities = 905/906 (99%), Positives = 906/906 (100%), Gaps = 0/906 (0%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS Sbjct 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 Query 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT Sbjct 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT Sbjct 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE Sbjct 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ Sbjct 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 Query 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR Sbjct 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 Query 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS Sbjct 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 Query 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE Sbjct 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 Query 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF Sbjct 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 Query 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD Sbjct 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 Query 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD Sbjct 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 Query 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV Sbjct 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 Query 901 VAVDAG 906 VAVDAG Sbjct 901 VAVDAG 906 >gi|306968223|ref|ZP_07480884.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis SUMu009] gi|308354201|gb|EFP43052.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis SUMu009] Length=906 Score = 1818 bits (4708), Expect = 0.0, Method: Compositional matrix adjust. Identities = 904/906 (99%), Positives = 905/906 (99%), Gaps = 0/906 (0%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS Sbjct 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 Query 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT Sbjct 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT Sbjct 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE Sbjct 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ Sbjct 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 Query 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR Sbjct 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 Query 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS Sbjct 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 Query 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE Sbjct 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 Query 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF Sbjct 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 Query 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD Sbjct 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 Query 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD Sbjct 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 Query 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELR TAKRAIGDIRRGV Sbjct 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRVTAKRAIGDIRRGV 900 Query 901 VAVDAG 906 VAVDAG Sbjct 901 VAVDAG 906 >gi|31793275|ref|NP_855768.1| ATP-dependent DNA helicase HelY [Mycobacterium bovis AF2122/97] gi|121637977|ref|YP_978201.1| putative ATP-dependent DNA helicase helY [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990471|ref|YP_002645158.1| putative ATP-dependent DNA helicase [Mycobacterium bovis BCG str. Tokyo 172] 6 more sequence titles Length=906 Score = 1817 bits (4707), Expect = 0.0, Method: Compositional matrix adjust. Identities = 904/906 (99%), Positives = 905/906 (99%), Gaps = 0/906 (0%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS Sbjct 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQ VR Sbjct 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQMVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 Query 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT Sbjct 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT Sbjct 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE Sbjct 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ Sbjct 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 Query 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR Sbjct 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 Query 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS Sbjct 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 Query 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE Sbjct 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 Query 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF Sbjct 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 Query 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD Sbjct 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 Query 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD Sbjct 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 Query 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV Sbjct 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 Query 901 VAVDAG 906 VAVDAG Sbjct 901 VAVDAG 906 >gi|289750687|ref|ZP_06510065.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T92] gi|289691274|gb|EFD58703.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis T92] Length=906 Score = 1816 bits (4704), Expect = 0.0, Method: Compositional matrix adjust. Identities = 904/906 (99%), Positives = 905/906 (99%), Gaps = 0/906 (0%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS Sbjct 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 Query 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT Sbjct 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT Sbjct 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE Sbjct 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ Sbjct 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 Query 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR Sbjct 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 Query 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS Sbjct 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 Query 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE Sbjct 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 Query 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF Sbjct 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 Query 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD Sbjct 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 Query 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 GQGAPFGADVPTP LRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD Sbjct 781 GQGAPFGADVPTPWLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 Query 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV Sbjct 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 Query 901 VAVDAG 906 VAVDAG Sbjct 901 VAVDAG 906 >gi|289574773|ref|ZP_06455000.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis K85] gi|289539204|gb|EFD43782.1| ATP-dependent DNA helicase helY [Mycobacterium tuberculosis K85] Length=906 Score = 1815 bits (4701), Expect = 0.0, Method: Compositional matrix adjust. Identities = 903/906 (99%), Positives = 904/906 (99%), Gaps = 0/906 (0%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS Sbjct 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQ VR Sbjct 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQMVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 Query 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT Sbjct 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 SEEERARIAEVIDH CGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT Sbjct 301 SEEERARIAEVIDHHCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE Sbjct 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ Sbjct 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 Query 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR Sbjct 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 Query 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS Sbjct 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 Query 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE Sbjct 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 Query 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF Sbjct 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 Query 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD Sbjct 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 Query 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD Sbjct 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 Query 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV Sbjct 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 Query 901 VAVDAG 906 VAVDAG Sbjct 901 VAVDAG 906 >gi|340627105|ref|YP_004745557.1| putative ATP-dependent DNA helicase HELY [Mycobacterium canettii CIPT 140010059] gi|340005295|emb|CCC44451.1| putative ATP-dependent DNA helicase HELY [Mycobacterium canettii CIPT 140010059] Length=906 Score = 1813 bits (4696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 902/906 (99%), Positives = 904/906 (99%), Gaps = 0/906 (0%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TEL ELDRFTA+LPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTELVELDRFTADLPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS Sbjct 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 Query 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT Sbjct 241 DWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLT 300 Query 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT Sbjct 301 SEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFT 360 Query 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE Sbjct 361 AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVE 420 Query 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ Sbjct 421 GHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQ 480 Query 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR Sbjct 481 YQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQR 540 Query 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS Sbjct 541 RQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS 600 Query 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE Sbjct 601 GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSRE 660 Query 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF Sbjct 661 QLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREF 720 Query 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD Sbjct 721 IDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGD 780 Query 781 GQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 G GAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD Sbjct 781 GPGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGD 840 Query 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV Sbjct 841 LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGV 900 Query 901 VAVDAG 906 VAVDAG Sbjct 901 VAVDAG 906 >gi|254819635|ref|ZP_05224636.1| ATP-dependent DNA helicase HelY [Mycobacterium intracellulare ATCC 13950] Length=926 Score = 1530 bits (3961), Expect = 0.0, Method: Compositional matrix adjust. Identities = 784/926 (85%), Positives = 831/926 (90%), Gaps = 20/926 (2%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 + EL EL RF +LPF+LD FQ RAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MAELVELTRFATDLPFALDGFQHRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGD+SVN +APVVVMTTEVLRNMLYADS Sbjct 61 GKCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PAL+GLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALRGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQP------QVNRELLRHIAHRR 234 GDTTVVVDEHRPVPLWQHVLVGKR+FDLFDYR +A QP +VN +LLRHI HRR Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRHSDAPEQPGAPREPRVNPDLLRHITHRR 240 Query 235 EADRMADWQPRR---RG-----SGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCD 286 EADRM+DWQPRR RG SGRP YR P RP+VIA LDAEGLLPAITFVFSRAGCD Sbjct 241 EADRMSDWQPRRSAGRGRPPARSGRPRLYRTPARPDVIASLDAEGLLPAITFVFSRAGCD 300 Query 287 AAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAG 346 AAV QCLRSPL+LT++EERA+IAEVI+HRCGDLAD+DLAVLGYYEWREGLLRGLAAHHAG Sbjct 301 AAVQQCLRSPLQLTTQEERAQIAEVIEHRCGDLADADLAVLGYYEWREGLLRGLAAHHAG 360 Query 347 MLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYT 406 MLPAFRHTVEELFTAGLV+AVFATETLALGINMPARTVVLERLVKFNGEQH+ LTPGEYT Sbjct 361 MLPAFRHTVEELFTAGLVRAVFATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYT 420 Query 407 QLTGRAGRRGIDVEGHAVVIWHPE---IEPSEVAGLASTRTFPLRSSFAPSYNMTINLVH 463 QLTGRAGRRGIDVEGHAVV+W+P EPS VAGLASTRTFPLRSSFAPSYNMTINLV Sbjct 421 QLTGRAGRRGIDVEGHAVVLWNPTEETTEPSAVAGLASTRTFPLRSSFAPSYNMTINLVQ 480 Query 464 RMGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRA 523 +MGP+QAHRLLEQSFAQYQADRSVVGLVRGIERG+ +LGEIA ELGG APILEYAR+RA Sbjct 481 QMGPEQAHRLLEQSFAQYQADRSVVGLVRGIERGDAMLGEIAGELGGPKAPILEYARMRA 540 Query 524 RVSELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPL 583 R+SE+ERAQ+RASRLQRRQAA+DALAALRRGDII ITHGRRGGLAVVLESARD DPRPL Sbjct 541 RISEMERAQSRASRLQRRQAASDALAALRRGDIINITHGRRGGLAVVLESARDSSDPRPL 600 Query 584 VLTEHRWAGRISSADYSG-TTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAAR 642 VLTE+RWAGRISSADYSG + PVGSM LPKRVEHRQPRVRRDLAS LRSAAAGL IPA R Sbjct 601 VLTENRWAGRISSADYSGMSAPVGSMPLPKRVEHRQPRVRRDLASTLRSAAAGLAIPAKR 660 Query 643 RV--SEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAA 700 R G FHDPEL REQLRRHP H +PG E+Q+RQAERYLRIERDNAQLE+KVAAA Sbjct 661 RGRGDADGEFHDPELAKLREQLRRHPSHNTPGREEQVRQAERYLRIERDNAQLEKKVAAA 720 Query 701 TNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGL 760 TNSLARTFDR VGLLTER FI+G DP VTDDGRLLARIYSESDLLVAECLRTGAW GL Sbjct 721 TNSLARTFDRIVGLLTERGFIEGRDGDPRVTDDGRLLARIYSESDLLVAECLRTGAWSGL 780 Query 761 KPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITP 820 KPAELA VVS+V+YE+RGGDG GA F AD PT LRQAL QTSRLS LRADEQ HRI P Sbjct 781 KPAELAAVVSSVLYESRGGDGPGAAFAADAPTQPLRQALQQTSRLSMALRADEQTHRIAP 840 Query 821 SREPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAA 880 SREPDDGFV VIYRW+RTGDLAAALAAAD GSGSPLLAGDFVRWCRQ LDLLDQVRNAA Sbjct 841 SREPDDGFVNVIYRWARTGDLAAALAAADPAGSGSPLLAGDFVRWCRQALDLLDQVRNAA 900 Query 881 PNPELRATAKRAIGDIRRGVVAVDAG 906 P+ E+RATAKRAI DIRRGVVAVDAG Sbjct 901 PDAEVRATAKRAINDIRRGVVAVDAG 926 >gi|296165173|ref|ZP_06847721.1| ATP-dependent DNA helicase HelY [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899481|gb|EFG78939.1| ATP-dependent DNA helicase HelY [Mycobacterium parascrofulaceum ATCC BAA-614] Length=948 Score = 1512 bits (3915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 785/926 (85%), Positives = 828/926 (90%), Gaps = 20/926 (2%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 VTELAEL RFTAELPF+LD FQQRAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALAA Sbjct 23 VTELAELTRFTAELPFALDGFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAA 82 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGD+SVN +APVVVMTTEVLRNMLYADS Sbjct 83 GKCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLYADS 142 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVR Sbjct 143 PALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVR 202 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRE------LLRHIAHRR 234 GDTTVVVDEHRPVPLWQHVLVGKR+FDLFDYR E GQP RE L RHIAHRR Sbjct 203 GDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRSTEPGGQPGAGREARVSPDLARHIAHRR 262 Query 235 EADRMADWQ------PRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAA 288 EADRM+DWQ R G GRP FYRPPGR +VIA LD+EGLLPAITFVFSRAGCDAA Sbjct 263 EADRMSDWQPRRGRGAGRGGPGRPRFYRPPGRADVIATLDSEGLLPAITFVFSRAGCDAA 322 Query 289 VTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGML 348 V QCLRSPLRLT+EEERA+IAEVIDHRCGDLAD+DLAVLGYYEWREGLLRGLAAHHAGML Sbjct 323 VQQCLRSPLRLTTEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGML 382 Query 349 PAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQL 408 P FRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH+PLTPGEYTQL Sbjct 383 PVFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVPLTPGEYTQL 442 Query 409 TGRAGRRGIDVEGHAVVIWHP---EIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRM 465 TGRAGRRGIDVEGHAVV+W+P EPS VAGLASTRTFPLRSSFAPSYNMTINLV +M Sbjct 443 TGRAGRRGIDVEGHAVVLWNPAEETTEPSAVAGLASTRTFPLRSSFAPSYNMTINLVQQM 502 Query 466 GPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARV 525 GP+QAHRLLEQSFAQYQADRSVVGLVRGIERG +L EIAAELGG APIL+YAR+RAR+ Sbjct 503 GPEQAHRLLEQSFAQYQADRSVVGLVRGIERGKAMLAEIAAELGGPRAPILDYARMRARI 562 Query 526 SELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVL 585 SELERAQ+RASRLQRRQAA+DALAALRRGDII ITHGRRGGLAVVLESARD +DPRPLVL Sbjct 563 SELERAQSRASRLQRRQAASDALAALRRGDIINITHGRRGGLAVVLESARDGEDPRPLVL 622 Query 586 TEHRWAGRISSADYSG-TTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRV 644 TE+RWAGRIS+ADYSG + VGSM LPKRVEHRQPRVRRDLASALRSAAAGL IPA RR Sbjct 623 TENRWAGRISTADYSGASAAVGSMPLPKRVEHRQPRVRRDLASALRSAAAGLDIPARRRA 682 Query 645 SEA---GGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAAT 701 G + DPEL S RE+LRRHP H S GLE +RQAERYLRIERDNAQLE+KVAAAT Sbjct 683 GRGDHDGAYQDPELASLREELRRHPSHNSAGLESLVRQAERYLRIERDNAQLEKKVAAAT 742 Query 702 NSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLK 761 NSLARTFDR VGLLTER FI GP TDP VTDDGRLLARIYSESDLLVAECLRTGAW LK Sbjct 743 NSLARTFDRIVGLLTERGFIQGPDTDPRVTDDGRLLARIYSESDLLVAECLRTGAWADLK 802 Query 762 PAELAGVVSAVVYETR-GGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITP 820 PAELA VVSAV+YETR GG+G F A+ PT R+RQAL QTSRLS LRADEQ HRI P Sbjct 803 PAELAAVVSAVLYETRGGGEGPRGAFAAEAPTQRVRQALQQTSRLSYALRADEQTHRIAP 862 Query 821 SREPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAA 880 SREPDDGFV VIYRW+++GDL+AALAA D G+GSPLLAGDFVRWCRQVLDLLDQVRNAA Sbjct 863 SREPDDGFVNVIYRWAKSGDLSAALAAVDPVGTGSPLLAGDFVRWCRQVLDLLDQVRNAA 922 Query 881 PNPELRATAKRAIGDIRRGVVAVDAG 906 P+ ELRATAKRAI D+RRGVVAVDAG Sbjct 923 PDAELRATAKRAINDVRRGVVAVDAG 948 >gi|254775080|ref|ZP_05216596.1| HelY [Mycobacterium avium subsp. avium ATCC 25291] Length=935 Score = 1511 bits (3911), Expect = 0.0, Method: Compositional matrix adjust. Identities = 787/924 (86%), Positives = 835/924 (91%), Gaps = 19/924 (2%) Query 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61 TEL EL RF++ELPF+LD FQ+RAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 12 TELVELSRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 71 Query 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSP 121 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGD+SVN +APVVVMTTEVLRNMLYADSP Sbjct 72 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLYADSP 131 Query 122 ALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRG 181 ALQGLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVRG Sbjct 132 ALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVRG 191 Query 182 DTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRE------LLRHIAHRRE 235 DTTVVVDEHRPVPLWQHVLVGKR+FDLFDYR EA GQP RE LLRHIAHRRE Sbjct 192 DTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNSEAPGQPSAGREPRVNPNLLRHIAHRRE 251 Query 236 ADRMADWQPRR---RG-----SGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDA 287 ADR++DWQPRR RG +GRP FYR PGRP+VIA LDAEGLLPAITFVFSRAGCDA Sbjct 252 ADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVIATLDAEGLLPAITFVFSRAGCDA 311 Query 288 AVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGM 347 AV QCLRSPL+LT++EER +IAEVI+HRCGDLAD+DLAVLGYYEWREGLLRGLAAHHAGM Sbjct 312 AVQQCLRSPLQLTTQEERVQIAEVIEHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGM 371 Query 348 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQ 407 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH+ LTPGEYTQ Sbjct 372 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQ 431 Query 408 LTGRAGRRGIDVEGHAVVIWHPE---IEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHR 464 LTGRAGRRGIDVEGHAVV+W+P EPS VAGLASTRTFPLRSSFAPSYNMTINLV + Sbjct 432 LTGRAGRRGIDVEGHAVVLWNPTEETTEPSAVAGLASTRTFPLRSSFAPSYNMTINLVQQ 491 Query 465 MGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRAR 524 MGP+QAHRLLEQSFAQYQADRSVVGLVRGIERG +L EIAAELGG APILEYAR+RAR Sbjct 492 MGPEQAHRLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGGPKAPILEYARMRAR 551 Query 525 VSELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLV 584 +SE+ERAQ+RASRL RRQAA+DALAALRRGDII I HGRRGGLAVVLESARD DPRPLV Sbjct 552 ISEMERAQSRASRLHRRQAASDALAALRRGDIINIAHGRRGGLAVVLESARDSSDPRPLV 611 Query 585 LTEHRWAGRISSADYSGTT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARR 643 LTE+RWAGRISSADYSG + PVGSM LPKRVEHRQPRVRRDLASALRSAAAGL IPA RR Sbjct 612 LTENRWAGRISSADYSGNSAPVGSMPLPKRVEHRQPRVRRDLASALRSAAAGLSIPAKRR 671 Query 644 VSEAG-GFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATN 702 ++ GFHDPEL S REQLRRHP H +PGLE Q+RQAERYLRIERDNAQLE+KVA ATN Sbjct 672 RGDSDEGFHDPELASLREQLRRHPSHHTPGLEAQVRQAERYLRIERDNAQLEKKVATATN 731 Query 703 SLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKP 762 SLARTFDR VGLLTER FI+ DP VTDDGRLLARIYSESDLLVAECLRTGAW GLKP Sbjct 732 SLARTFDRIVGLLTERGFIERRDGDPRVTDDGRLLARIYSESDLLVAECLRTGAWSGLKP 791 Query 763 AELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSR 822 AELA VVS+V+YE+RGG+G GA F A+ PT LRQAL QTSRLS+ LRADEQ HRI PSR Sbjct 792 AELAAVVSSVLYESRGGEGPGAAFAAEAPTQPLRQALLQTSRLSSALRADEQTHRIAPSR 851 Query 823 EPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPN 882 EPDDGFV VIYRW+RT DLAAALAAAD G+GSPLLAGDFVRWCRQVLDLLDQVRNAAP+ Sbjct 852 EPDDGFVTVIYRWARTADLAAALAAADPGGAGSPLLAGDFVRWCRQVLDLLDQVRNAAPD 911 Query 883 PELRATAKRAIGDIRRGVVAVDAG 906 ELRATAKRAI DIRRGVVAVDAG Sbjct 912 TELRATAKRAINDIRRGVVAVDAG 935 >gi|342859796|ref|ZP_08716449.1| ATP-dependent DNA helicase HelY [Mycobacterium colombiense CECT 3035] gi|342132928|gb|EGT86148.1| ATP-dependent DNA helicase HelY [Mycobacterium colombiense CECT 3035] Length=922 Score = 1502 bits (3889), Expect = 0.0, Method: Compositional matrix adjust. Identities = 777/922 (85%), Positives = 830/922 (91%), Gaps = 16/922 (1%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 + EL EL RFTAELPF+LD FQ+RAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALA+G Sbjct 1 MAELVELTRFTAELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALASG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGD+SVN +APVVVMTTEVLRNMLYADS Sbjct 61 GKCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PAL GLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALHGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDY--RIGEAEGQPQVNRELLRHIAHRREADR 238 GDTTVVVDEHRPVPLWQHVLVGKR+ DLFDY A+ QP+VN ELLRHI+HRREADR Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRLLDLFDYDHERPAADRQPRVNPELLRHISHRREADR 240 Query 239 MADWQPRRR----GSGRPG---FYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQ 291 M+DWQPRR+ G+GRP YR P RP+VIA LD+EGLLPAITFVFSRAGCDAAV Q Sbjct 241 MSDWQPRRQAGRGGAGRPSRPRLYRTPSRPDVIATLDSEGLLPAITFVFSRAGCDAAVQQ 300 Query 292 CLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAF 351 CLRSPL+LT++EERA+IAEVI+HRCGDLAD+DL VLGYYEWREGLLRGLAAHHAGMLP F Sbjct 301 CLRSPLQLTTQEERAQIAEVIEHRCGDLADADLGVLGYYEWREGLLRGLAAHHAGMLPVF 360 Query 352 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGR 411 RHTVEELFTAGLV+AVFATETLALGINMPARTVVLERLVKFNGEQH+ LTPGEYTQLTGR Sbjct 361 RHTVEELFTAGLVQAVFATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQLTGR 420 Query 412 AGRRGIDVEGHAVVIWHPE---IEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQ 468 AGRRGIDVEGHAVV+W+P EPS VAGLASTRTFPLRSSFAPSYNMTINLV +MGP+ Sbjct 421 AGRRGIDVEGHAVVLWNPTEETTEPSAVAGLASTRTFPLRSSFAPSYNMTINLVQQMGPE 480 Query 469 QAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSEL 528 QAHRLLEQSFAQYQADRSVVGLVRGIERG +L EIA ELGG+ APILEYAR+RAR+SE+ Sbjct 481 QAHRLLEQSFAQYQADRSVVGLVRGIERGTAMLDEIAGELGGAQAPILEYARMRARISEM 540 Query 529 ERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEH 588 ERAQ+RASRLQRRQAA+DALAALRRGDII ITHGRRGGLAVVLESARD DPRPLVLTE+ Sbjct 541 ERAQSRASRLQRRQAASDALAALRRGDIINITHGRRGGLAVVLESARDSSDPRPLVLTEN 600 Query 589 RWAGRISSADYSGTT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEA 647 RWAGRIS+ADYSG + PVGSM+LPKRVEHRQPRVRRDLASALRSAAAGL IP+ R Sbjct 601 RWAGRISTADYSGASAPVGSMSLPKRVEHRQPRVRRDLASALRSAAAGLTIPSRHRGGRG 660 Query 648 ---GGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSL 704 G FHDPEL S REQLRRHP H +PGLE Q+RQAERYLRIERDNAQLE+KVAAATNSL Sbjct 661 DTDGAFHDPELASLREQLRRHPSHNTPGLEAQVRQAERYLRIERDNAQLEKKVAAATNSL 720 Query 705 ARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAE 764 ARTFDR VGLLTER FI+G DP VTDDGRLLARIYSESDLLVAECLRTGAW GLKPAE Sbjct 721 ARTFDRIVGLLTERGFIEGRDGDPRVTDDGRLLARIYSESDLLVAECLRTGAWSGLKPAE 780 Query 765 LAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREP 824 LA VVS+V+YETRGG+G GA F AD PT +RQAL QTSRLS LRADEQ HRI PSREP Sbjct 781 LAAVVSSVLYETRGGEGPGAGFAADAPTQPVRQALQQTSRLSMALRADEQTHRIAPSREP 840 Query 825 DDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPE 884 DDGFV VIYRW+RT DLAAALAAAD G+GSPLLAGDFVRWCRQ LDLLDQVRNAAP+ E Sbjct 841 DDGFVNVIYRWARTADLAAALAAADPAGTGSPLLAGDFVRWCRQALDLLDQVRNAAPDAE 900 Query 885 LRATAKRAIGDIRRGVVAVDAG 906 LRATAKRAI DIRRGVVAVDAG Sbjct 901 LRATAKRAINDIRRGVVAVDAG 922 >gi|240172773|ref|ZP_04751432.1| ATP-dependent DNA helicase HelY [Mycobacterium kansasii ATCC 12478] Length=908 Score = 1481 bits (3834), Expect = 0.0, Method: Compositional matrix adjust. Identities = 778/914 (86%), Positives = 825/914 (91%), Gaps = 14/914 (1%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +T+L EL RF AELPFSLDDFQ+RAC+ALE GHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTDLPELTRFIAELPFSLDDFQRRACAALECGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVN NAPVVVMTTEVLRNMLYADS Sbjct 61 GKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNANAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PALQGLS+VVMDEVHFLADRMRGPVWEEVILQLP++VRVVSLSATVSNAEEFGGW+QTVR Sbjct 121 PALQGLSHVVMDEVHFLADRMRGPVWEEVILQLPEEVRVVSLSATVSNAEEFGGWMQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQH+LVGKR+FDLF Y +AE QP+VN +L+RHIAHRREADRM+ Sbjct 181 GDTTVVVDEHRPVPLWQHILVGKRLFDLFAYD-ADAE-QPRVNPDLVRHIAHRREADRMS 238 Query 241 DW----QPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSP 296 DW Q R G GR FYRP RPEVIAKLD+EGLLPAITFVFSRAGCDAAV QCLRSP Sbjct 239 DWQPRRQGGRGGPGRSRFYRPLPRPEVIAKLDSEGLLPAITFVFSRAGCDAAVQQCLRSP 298 Query 297 LRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVE 356 LRLT E+ERARIAEVIDHRCGDLAD+DLAVLGYYEWREGL RGLAAHHAGMLPAFRHTVE Sbjct 299 LRLTGEDERARIAEVIDHRCGDLADADLAVLGYYEWREGLQRGLAAHHAGMLPAFRHTVE 358 Query 357 ELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRG 416 ELF AGL+KAVFATETLALGINMPARTVVLERLVKFNGEQH+PLTPGEYTQLTGRAGRRG Sbjct 359 ELFAAGLIKAVFATETLALGINMPARTVVLERLVKFNGEQHLPLTPGEYTQLTGRAGRRG 418 Query 417 IDVEGHAVVIWHPE---IEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRL 473 IDVEGHAVVIWHP EP+EVAGLASTRTFPLRSSF PSYNMTINLVHRMGP+QAHRL Sbjct 419 IDVEGHAVVIWHPSDNTSEPAEVAGLASTRTFPLRSSFVPSYNMTINLVHRMGPEQAHRL 478 Query 474 LEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQA 533 LEQSFAQYQADRSVVGLVRGIERG R+L EIAAELGG +APIL YARLRA+VSELER+QA Sbjct 479 LEQSFAQYQADRSVVGLVRGIERGKRMLDEIAAELGGPNAPILNYARLRAQVSELERSQA 538 Query 534 RASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGR 593 RASRLQRRQ A DALAALR+GDIITITHGRRGGLAVVLESARD DPRPLVLTE+RWAGR Sbjct 539 RASRLQRRQEANDALAALRKGDIITITHGRRGGLAVVLESARDSADPRPLVLTENRWAGR 598 Query 594 ISSADYS-GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHD 652 ISSADYS G PVGSM LPKR+E+RQPRVRRDLASALRSAAAGL PA RR + D Sbjct 599 ISSADYSGGAPPVGSMALPKRIEYRQPRVRRDLASALRSAAAGLPAPADRR-GKKRTRQD 657 Query 653 PELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFV 712 P+LES REQLRRHP H + +E Q+RQAERYLRIERDN QL+RKVAAATNSLARTFDR V Sbjct 658 PDLESLREQLRRHPCHHAGDVEVQVRQAERYLRIERDNTQLQRKVAAATNSLARTFDRIV 717 Query 713 GLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAV 772 GLLTER+FI GP TDP VTDDGRLLARIYSESDLLVAECLRTGAW GLKP ELA VVSAV Sbjct 718 GLLTERQFIHGPPTDPEVTDDGRLLARIYSESDLLVAECLRTGAWAGLKPPELAAVVSAV 777 Query 773 VYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVI 832 +YE+RG D P G + PTP LRQAL QT+RLS LRADEQ HRI+ SREPDDGFV VI Sbjct 778 LYESRGSD---EPSGVEAPTPGLRQALRQTARLSAQLRADEQTHRISQSREPDDGFVNVI 834 Query 833 YRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRA 892 YRW+RTGDL AALAAADV+G+GSPL AGDFVRWCRQVLDLLDQVRNAAP+PE+RA AKRA Sbjct 835 YRWARTGDLGAALAAADVSGTGSPLSAGDFVRWCRQVLDLLDQVRNAAPDPEVRAVAKRA 894 Query 893 IGDIRRGVVAVDAG 906 I DIRRGVVAVDAG Sbjct 895 INDIRRGVVAVDAG 908 >gi|15827694|ref|NP_301957.1| Ski2 subfamily helicase [Mycobacterium leprae TN] gi|221230171|ref|YP_002503587.1| putative helicase, Ski2 subfamily [Mycobacterium leprae Br4923] gi|18203674|sp|Q9ZBD8.1|HELY_MYCLE RecName: Full=Probable helicase helY gi|4200282|emb|CAA22943.1| putative helicase [Mycobacterium leprae] gi|13093245|emb|CAC31714.1| probable helicase, Ski2 subfamily [Mycobacterium leprae] gi|219933278|emb|CAR71428.1| probable helicase, Ski2 subfamily [Mycobacterium leprae Br4923] Length=920 Score = 1468 bits (3800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 760/922 (83%), Positives = 811/922 (88%), Gaps = 18/922 (1%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +T+LAEL RFTAELPFSLDDFQQRAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 1 MTDLAELARFTAELPFSLDDFQQRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQK+TDLTARYGR++IGLLTGD SVNG++PVVVMTTEVLRNMLYADS Sbjct 61 GKCFYTTPLKALSNQKYTDLTARYGRNRIGLLTGDQSVNGDSPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 ALQGLS+VVMDEVHF+ADRMRGPVWEEVIL LPDDVR+VSLSATVSNAEEFGGW+QTVR Sbjct 121 FALQGLSHVVMDEVHFIADRMRGPVWEEVILHLPDDVRMVSLSATVSNAEEFGGWVQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMA 240 GDTTVVVDEHRPVPLWQHVLVGKR+FDLFDY Q VN LLRHIAH READRM+ Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRLFDLFDY--DSNVDQSPVNPNLLRHIAHCREADRMS 238 Query 241 DW-QPRRR---GSG-RPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRS 295 DW PRRR GSG RP FYR RPEVIA LDAEGLLPAITFVFSR GCDAAV QCLRS Sbjct 239 DWRNPRRRAGRGSGVRPRFYRSLARPEVIAILDAEGLLPAITFVFSRFGCDAAVQQCLRS 298 Query 296 PLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTV 355 PLRLTSEEERA+IAEVIDHRCGDLAD+DLAVLGYYEWREGLLRGLAAHHAGMLPAFRH V Sbjct 299 PLRLTSEEERAQIAEVIDHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGMLPAFRHAV 358 Query 356 EELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRR 415 EELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNG+QH+PLTPGEYTQLTGRAGRR Sbjct 359 EELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGKQHVPLTPGEYTQLTGRAGRR 418 Query 416 GIDVEGHAVVIWHPEIE---PSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHR 472 GIDVEGHAVVIWHP + PS VAGLAS RTFPLRSSF PSYNMTINLVH M P++AH Sbjct 419 GIDVEGHAVVIWHPSEDTSGPSAVAGLASARTFPLRSSFVPSYNMTINLVHWMSPERAHA 478 Query 473 LLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQ 532 LLEQSFAQYQADRSVVGLVRGIER ++LG+I++ELGG DAPILEYARLRAR++E+ERAQ Sbjct 479 LLEQSFAQYQADRSVVGLVRGIERCTQVLGDISSELGGPDAPILEYARLRARIAEMERAQ 538 Query 533 ARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAG 592 + RLQR+QAA D LAALRRGDIITITHGR GGLAVVLESARD +PRPLVLTEHRWAG Sbjct 539 SFVFRLQRKQAANDVLAALRRGDIITITHGRHGGLAVVLESARDSSNPRPLVLTEHRWAG 598 Query 593 RISSADYSGTT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIP-------AARRV 644 RISSADY G PVGSMTLPKRVEHRQ RVRRDLASALRSAA L +P + Sbjct 599 RISSADYMGAAAPVGSMTLPKRVEHRQQRVRRDLASALRSAATRLSVPDIGDGVDGDKIG 658 Query 645 SEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSL 704 G HDPEL S R QLRRH + +PGL+ Q++QAERYLRIER NAQL+RKVAAATNSL Sbjct 659 FNDGVLHDPELASLRAQLRRHRSNNAPGLDTQLQQAERYLRIERYNAQLQRKVAAATNSL 718 Query 705 ARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAE 764 ARTFDR VGLL ER+FI GPA DP VTDDGRLLARIYSESDLLVAECLRTGAW GL+PAE Sbjct 719 ARTFDRIVGLLIERDFIRGPADDPQVTDDGRLLARIYSESDLLVAECLRTGAWAGLRPAE 778 Query 765 LAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREP 824 LA VVSAV+YETRG DG G P A+ PTPRLRQAL TSRLS TLRADEQ HRI SREP Sbjct 779 LAAVVSAVLYETRGDDGPGGPVDAEAPTPRLRQALQHTSRLSATLRADEQRHRIALSREP 838 Query 825 DDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPE 884 DDGFV VIY W+RTGDLAA LAAAD +G+G+PL AGDFVRWCRQVLDLLDQ+RNAAP P+ Sbjct 839 DDGFVGVIYCWARTGDLAAVLAAADASGNGAPLSAGDFVRWCRQVLDLLDQLRNAAPEPD 898 Query 885 LRATAKRAIGDIRRGVVAVDAG 906 LRATAKRAI D+RRGVVAVDAG Sbjct 899 LRATAKRAINDVRRGVVAVDAG 920 >gi|183983077|ref|YP_001851368.1| ATP-dependent DNA helicase HelY [Mycobacterium marinum M] gi|183176403|gb|ACC41513.1| ATP-dependent DNA helicase HelY [Mycobacterium marinum M] Length=918 Score = 1464 bits (3791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 773/919 (85%), Positives = 824/919 (90%), Gaps = 14/919 (1%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TEL EL RFTA+LPF+LDDFQ+RAC+ALE GHGVLVCAPTGAGKTVVGEFAVHLALA+G Sbjct 1 MTELVELARFTADLPFALDDFQRRACAALEGGHGVLVCAPTGAGKTVVGEFAVHLALASG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGDL+VN NAPVVVMTTEVLRNMLYADS Sbjct 61 GKCFYTTPLKALSNQKHTDLTARYGRDKIGLLTGDLAVNANAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PAL GLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGE---AEGQPQVNRELLRHIAHRREAD 237 GDTTVVVDEHRPVPLWQHVLVGKR+FDLFDY+ + + Q +VN +LLRHIAHRREAD Sbjct 181 GDTTVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAVSSRQARVNPDLLRHIAHRREAD 240 Query 238 RMADWQPRRRGSGRPGFYRPPGRP------EVIAKLDAEGLLPAITFVFSRAGCDAAVTQ 291 RM+DW+PRR G G G P +VIA LD+ GLLPAITFVFSRAGCDAAV Q Sbjct 241 RMSDWEPRRSGRGGYGRGGRPRFYRPPPRPDVIATLDSAGLLPAITFVFSRAGCDAAVQQ 300 Query 292 CLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAF 351 CLRSPLRLTSEEERA+IAEVIDHRCGDL D DLAVLGYYEWREGLLRGLAAHHAGMLPAF Sbjct 301 CLRSPLRLTSEEERAQIAEVIDHRCGDLEDDDLAVLGYYEWREGLLRGLAAHHAGMLPAF 360 Query 352 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGR 411 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH+PLTPGEYTQLTGR Sbjct 361 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVPLTPGEYTQLTGR 420 Query 412 AGRRGIDVEGHAVVIWHPEIE---PSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQ 468 AGRRGIDVEGHAVV+WHP E PS VAGLASTRTFPLRSSFAPSYNMTINLV MGP+ Sbjct 421 AGRRGIDVEGHAVVLWHPTDENADPSAVAGLASTRTFPLRSSFAPSYNMTINLVQHMGPE 480 Query 469 QAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSEL 528 QAHRLLEQSFAQYQADRSVVGLVRGIERG +L E+AAELGG DAPIL+YAR+RARV+E+ Sbjct 481 QAHRLLEQSFAQYQADRSVVGLVRGIERGKEMLDELAAELGGPDAPILDYARMRARVTEM 540 Query 529 ERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEH 588 ER+QARASRLQRRQ A++ALAALR+GDIITITHGRRGGLAVVLESARD DPRPLVLTE+ Sbjct 541 ERSQARASRLQRRQEASEALAALRKGDIITITHGRRGGLAVVLESARDSSDPRPLVLTEN 600 Query 589 RWAGRISSADYSGTTP-VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEA 647 RWAGRISSADY+G +P VGSMTLPKRVEHRQPRVRRDLASALRSAAAG+ PAARR + Sbjct 601 RWAGRISSADYTGESPPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGMTAPAARR-EKT 659 Query 648 GGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLART 707 HDP+L S RE+LRRHP H +PG+E QIRQAERYLRIERDNAQLE KVAAATNSLART Sbjct 660 RAPHDPDLASLREKLRRHPCHNAPGVESQIRQAERYLRIERDNAQLENKVAAATNSLART 719 Query 708 FDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAG 767 FDR VGLLTERE+I GPA DP VTDDGRLLARIYSESDLLVAECLRTGAW GLKP ELA Sbjct 720 FDRIVGLLTEREYIHGPADDPRVTDDGRLLARIYSESDLLVAECLRTGAWAGLKPPELAA 779 Query 768 VVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDG 827 VVS V+YETRG DG G G + PTPRLRQAL QTSRLS LRADEQAHRI SREPDDG Sbjct 780 VVSCVLYETRGSDGGGGRPGVEAPTPRLRQALIQTSRLSVALRADEQAHRIGQSREPDDG 839 Query 828 FVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRA 887 FV V+YRW+RTGDL+AALAAAD+ G GSPL AGDFVRWCRQVLDLLDQVRNAAP+PE+RA Sbjct 840 FVNVVYRWARTGDLSAALAAADIEGPGSPLSAGDFVRWCRQVLDLLDQVRNAAPDPEVRA 899 Query 888 TAKRAIGDIRRGVVAVDAG 906 AKRAI DIRRGVVAVDAG Sbjct 900 AAKRAINDIRRGVVAVDAG 918 >gi|118617834|ref|YP_906166.1| ATP-dependent DNA helicase HelY [Mycobacterium ulcerans Agy99] gi|118569944|gb|ABL04695.1| ATP-dependent DNA helicase HelY [Mycobacterium ulcerans Agy99] Length=918 Score = 1457 bits (3772), Expect = 0.0, Method: Compositional matrix adjust. Identities = 771/919 (84%), Positives = 822/919 (90%), Gaps = 14/919 (1%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 +TEL EL RFTA+LPF+LDDFQ+RAC+ALE GHGVLVCAPTGAGKTVVGEFAVHLALA+G Sbjct 1 MTELVELARFTADLPFALDDFQRRACAALEGGHGVLVCAPTGAGKTVVGEFAVHLALASG 60 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTPLKALSNQKHTDLTARYGRD+ GLLTGDL+VN NAPVVVMTTEVLRNMLYADS Sbjct 61 GKCFYTTPLKALSNQKHTDLTARYGRDKTGLLTGDLAVNANAPVVVMTTEVLRNMLYADS 120 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 PAL GLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVR Sbjct 121 PALPGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVR 180 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEG---QPQVNRELLRHIAHRREAD 237 GDT VVVDEHRPVPLWQHVLVGKR+FDLFDY+ + G Q +VN +LLRHIAHRREAD Sbjct 181 GDTAVVVDEHRPVPLWQHVLVGKRLFDLFDYQADKPAGSSRQARVNPDLLRHIAHRREAD 240 Query 238 RMADWQPRRRGSGRPGFYRPPGRP------EVIAKLDAEGLLPAITFVFSRAGCDAAVTQ 291 RM+DW+PRR G G G R P +VIA LD+ GLLPAITFVFSRAGCDAAV Q Sbjct 241 RMSDWEPRRSGRGEYGRGRRPRFYRPPPRPDVIATLDSAGLLPAITFVFSRAGCDAAVQQ 300 Query 292 CLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAF 351 CLRSPLRLTSEEERA+IAEVIDHRCGDL D DLAVLGYYEWREGLLRGLAAHHAGMLPAF Sbjct 301 CLRSPLRLTSEEERAQIAEVIDHRCGDLEDDDLAVLGYYEWREGLLRGLAAHHAGMLPAF 360 Query 352 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGR 411 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH+PLTPGEYTQLTGR Sbjct 361 RHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVPLTPGEYTQLTGR 420 Query 412 AGRRGIDVEGHAVVIWHPEIE---PSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQ 468 AGRRGIDVEGHAVV+WHP E PS VAGLASTRTFPLRSSFAPSYNMTINLV MGP+ Sbjct 421 AGRRGIDVEGHAVVLWHPTDENADPSAVAGLASTRTFPLRSSFAPSYNMTINLVQHMGPE 480 Query 469 QAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSEL 528 QAHRLLEQSFAQYQADRSVVGLVRGIERG +L E+AAELGG DAPIL+YAR+RARV+E+ Sbjct 481 QAHRLLEQSFAQYQADRSVVGLVRGIERGREMLDELAAELGGPDAPILDYARMRARVTEM 540 Query 529 ERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEH 588 ER+QARASRLQRRQ A++ALAALR+GDIITITHGRRGGLAVVLESARD DPRPLVLTE+ Sbjct 541 ERSQARASRLQRRQEASEALAALRKGDIITITHGRRGGLAVVLESARDSSDPRPLVLTEN 600 Query 589 RWAGRISSADYSGTTP-VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEA 647 RWAGRISSADY+G +P VGSMTLPKRVEHRQPRVRRDLASALRSAAAG+ PAARR + Sbjct 601 RWAGRISSADYTGESPPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGMTAPAARR-EKT 659 Query 648 GGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLART 707 HDP+L S RE+LRRHP H +PG+E +IRQAE YLRIERDNAQLE KVAAATNSLART Sbjct 660 RAPHDPDLASLREKLRRHPCHNAPGVESRIRQAEHYLRIERDNAQLENKVAAATNSLART 719 Query 708 FDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAG 767 FDR VGLLTERE+I GPA DP VTDDGRLLARIYSESDLLVAECLRTGAW GLKP ELA Sbjct 720 FDRIVGLLTEREYIHGPADDPRVTDDGRLLARIYSESDLLVAECLRTGAWAGLKPPELAA 779 Query 768 VVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDG 827 VVS V+YETRG DG G G + PTPRLRQAL QTSRLS LRADEQAHRI SREPDDG Sbjct 780 VVSCVLYETRGSDGGGGRPGVEAPTPRLRQALIQTSRLSVALRADEQAHRIGQSREPDDG 839 Query 828 FVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRA 887 FV V+YRW+RTGDL+AALAAAD+ G GSPL AGDFVRWCRQVLDLLDQVRNAAP+PE+RA Sbjct 840 FVNVVYRWARTGDLSAALAAADIEGPGSPLSAGDFVRWCRQVLDLLDQVRNAAPDPEVRA 899 Query 888 TAKRAIGDIRRGVVAVDAG 906 AKRAI DIRRGVVAVDAG Sbjct 900 AAKRAINDIRRGVVAVDAG 918 >gi|108799443|ref|YP_639640.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119868556|ref|YP_938508.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. KMS] gi|108769862|gb|ABG08584.1| DEAD/DEAH box helicase-like protein [Mycobacterium sp. MCS] gi|119694645|gb|ABL91718.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. KMS] Length=918 Score = 1404 bits (3634), Expect = 0.0, Method: Compositional matrix adjust. Identities = 720/912 (79%), Positives = 786/912 (87%), Gaps = 12/912 (1%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L F A +PF+LD FQ RAC ALE GHGVLVCAPTGAGKTVVGEFAVHLALAAG KCFY Sbjct 8 QLAAFAAGMPFALDPFQIRACEALESGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFY 67 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQKH DL RYG ++IGLLTGD S+NG+A +VVMTTEVLRNMLYADSPAL G Sbjct 68 TTPIKALSNQKHADLVRRYGPEKIGLLTGDQSINGDADIVVMTTEVLRNMLYADSPALHG 127 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LS+VVMDEVHFLADRMRG VWEEVIL LPD+VR+VSLSATVSNAEEFGGWIQTVRGDTTV Sbjct 128 LSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLSATVSNAEEFGGWIQTVRGDTTV 187 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRI---GEAEGQPQVNRELLRHIAHRREADRMADW 242 VVDEHRPVPLWQHVLVGKR+FDLFDYR + + V+ ELLRHIAHRREADR+ADW Sbjct 188 VVDEHRPVPLWQHVLVGKRLFDLFDYRAHSPARSGRELVVDPELLRHIAHRREADRLADW 247 Query 243 QPRRRGSG----RPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 QPR RG RP YRPP RP+VIA LD EGLLPAITFVFSRAGCDAAV QCLRSPLR Sbjct 248 QPRGRGRSAHRSRPTIYRPPARPDVIAALDREGLLPAITFVFSRAGCDAAVKQCLRSPLR 307 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 LT+ EER RIAEVID RC DLA++DL VL Y+EWREGLLRGLAAHHAGMLP FRHTVEEL Sbjct 308 LTTNEERQRIAEVIDRRCADLAEADLIVLDYHEWREGLLRGLAAHHAGMLPVFRHTVEEL 367 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 FTAGLVKAVFATETLALGINMPARTVVLE+LVKFNGEQHMPLTPGEYTQLTGRAGRRGID Sbjct 368 FTAGLVKAVFATETLALGINMPARTVVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 427 Query 419 VEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSF 478 VEGHAVV+W P++EP EVAGLASTRTFPLRSSFAPSYNMTINLVH+MGP QA +LLEQSF Sbjct 428 VEGHAVVLWTPDVEPVEVAGLASTRTFPLRSSFAPSYNMTINLVHQMGPAQARQLLEQSF 487 Query 479 AQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRL 538 AQYQADRSVVGL RG+ERG R+L EIAAELGG DAPIL+Y RLRA++SE ERAQ+R+SRL Sbjct 488 AQYQADRSVVGLRRGVERGERMLDEIAAELGGRDAPILDYVRLRAKISERERAQSRSSRL 547 Query 539 QRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSAD 598 QRR AA DAL+ALRRGDII+IT+GRRGGLAVVLESARD DDPRPLVLTEHRWAGRISSAD Sbjct 548 QRRAAANDALSALRRGDIISITNGRRGGLAVVLESARDTDDPRPLVLTEHRWAGRISSAD 607 Query 599 YSGTTP-VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAA---RRVSEAGGFHDPE 654 Y+G TP VG+MTLPKR+EHR PRVRRDLASAL SAAAGL P + RR ++ DPE Sbjct 608 YTGATPRVGTMTLPKRIEHRNPRVRRDLASALLSAAAGLATPESRGRRRGAQQDDDTDPE 667 Query 655 LESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGL 714 L S REQ+RRHP H P ED++R AERYLRIERDNAQ+++KVAAATNSLARTFDR V L Sbjct 668 LVSLREQMRRHPAHHLPDREDKVRIAERYLRIERDNAQIQQKVAAATNSLARTFDRIVVL 727 Query 715 LTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVY 774 L ER FID DP VTDDGRLLARIYSESDLLVAECLR G WEGL AELA V+SAV++ Sbjct 728 LGERGFIDTTGDDPKVTDDGRLLARIYSESDLLVAECLRAGTWEGLDAAELAAVLSAVLF 787 Query 775 ETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYR 834 E+R GD G P G++ PT ++R+AL+QT RLS LRADE+ HR+ P REPD+GFV IYR Sbjct 788 ESR-GDTPGVPAGSEAPTTKVRRALSQTRRLSAELRADERRHRLNPGREPDEGFVAAIYR 846 Query 835 WSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIG 894 W+ TGDL ALAA+D +G GSPL AGDFVRWCRQVLDLLDQVRNAAP P LR AKRAI Sbjct 847 WATTGDLTTALAASDASGGGSPLSAGDFVRWCRQVLDLLDQVRNAAPTPALRTAAKRAIN 906 Query 895 DIRRGVVAVDAG 906 DIRRGVVAVDAG Sbjct 907 DIRRGVVAVDAG 918 >gi|126435097|ref|YP_001070788.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium sp. JLS] gi|126234897|gb|ABN98297.1| DEAD/DEAH box helicase domain protein [Mycobacterium sp. JLS] Length=918 Score = 1403 bits (3631), Expect = 0.0, Method: Compositional matrix adjust. Identities = 719/912 (79%), Positives = 785/912 (87%), Gaps = 12/912 (1%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L F A +PF+LD FQ RAC ALE GHGVLVCAPTGAGKTVVGEFAVHLALAAG KCFY Sbjct 8 QLAAFAAGMPFALDPFQIRACEALESGHGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFY 67 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQKH DL RYG ++IGLLTGD S+NG+A +VVMTTEVLRNMLYADSPAL G Sbjct 68 TTPIKALSNQKHADLVRRYGPEKIGLLTGDQSINGDADIVVMTTEVLRNMLYADSPALHG 127 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LS+VVMDEVHFLADRMRG VWEEVIL LPD+VR+VSLSATVSNAEEFGGWIQTVRGDTTV Sbjct 128 LSHVVMDEVHFLADRMRGAVWEEVILHLPDEVRLVSLSATVSNAEEFGGWIQTVRGDTTV 187 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRI---GEAEGQPQVNRELLRHIAHRREADRMADW 242 VVDEHRPVPLWQHVLVGKR+FDLFDYR + + V+ ELLRHIAHRREADR+ADW Sbjct 188 VVDEHRPVPLWQHVLVGKRLFDLFDYRAHSPARSGRELVVDPELLRHIAHRREADRLADW 247 Query 243 QPRRRGSG----RPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 QPR RG RP YRPP RP+VIA LD EGLLPAITFVFSRAGCDAAV QCLRSPLR Sbjct 248 QPRGRGRSAHRSRPTIYRPPARPDVIAALDREGLLPAITFVFSRAGCDAAVKQCLRSPLR 307 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 LT+ EER RIAEVID RC DLA++DL VL Y+EWREGLLRGLAAHHAGMLP FRHTVEEL Sbjct 308 LTTNEERQRIAEVIDRRCADLAEADLIVLDYHEWREGLLRGLAAHHAGMLPVFRHTVEEL 367 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 FTAGLVKAVFATETLALGINMPARTVVLE+LVKFNGEQHMPLTPGEYTQLTGRAGRRGID Sbjct 368 FTAGLVKAVFATETLALGINMPARTVVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 427 Query 419 VEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSF 478 VEGHAVV+W P++EP EVAGLASTRTFPLRSSFAPSYNMTINLVH+MGP QA +LLEQSF Sbjct 428 VEGHAVVLWTPDVEPVEVAGLASTRTFPLRSSFAPSYNMTINLVHQMGPAQARQLLEQSF 487 Query 479 AQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRL 538 AQYQADRSVVGL RG+ERG R+L EIAAELGG DAPIL Y RLRA++SE ERAQ+R+SRL Sbjct 488 AQYQADRSVVGLRRGVERGERMLDEIAAELGGRDAPILGYVRLRAKISERERAQSRSSRL 547 Query 539 QRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSAD 598 QRR AA DAL+ALRRGDII+IT+GRRGGLAVVLESARD DDPRPLVLTEHRWAGRISSAD Sbjct 548 QRRAAANDALSALRRGDIISITNGRRGGLAVVLESARDTDDPRPLVLTEHRWAGRISSAD 607 Query 599 YSGTTP-VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAA---RRVSEAGGFHDPE 654 Y+G TP VG+MTLPKR+EHR PRVRRDLASAL SAAAGL P + RR ++ DPE Sbjct 608 YTGATPRVGTMTLPKRIEHRNPRVRRDLASALLSAAAGLATPESRGRRRGAQQDDDTDPE 667 Query 655 LESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGL 714 L S REQ+RRHP H P ED++R AERYLRIERDNAQ+++KVAAATNSLARTFDR V L Sbjct 668 LVSLREQMRRHPAHHLPDHEDKVRIAERYLRIERDNAQIQQKVAAATNSLARTFDRIVVL 727 Query 715 LTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVY 774 L ER FID DP VTDDGRLLARIYSESDLLVAECLR G WEGL AELA V+S+V++ Sbjct 728 LGERGFIDTTGDDPKVTDDGRLLARIYSESDLLVAECLRAGTWEGLDAAELAAVLSSVLF 787 Query 775 ETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYR 834 E+R GD G P G++ PT ++R+AL+QT RLS LRADE+ HR+ P REPD+GFV IYR Sbjct 788 ESR-GDTPGVPAGSEAPTAKVRRALSQTRRLSAELRADERRHRLNPGREPDEGFVAAIYR 846 Query 835 WSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIG 894 W+ TGDL ALAA+D +G GSPL AGDFVRWCRQVLDLLDQVRNAAP P LR AKRAI Sbjct 847 WATTGDLTTALAASDASGGGSPLSAGDFVRWCRQVLDLLDQVRNAAPTPALRTAAKRAIN 906 Query 895 DIRRGVVAVDAG 906 DIRRGVVAVDAG Sbjct 907 DIRRGVVAVDAG 918 >gi|118470951|ref|YP_888176.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] gi|118172238|gb|ABK73134.1| DEAD/DEAH box helicase [Mycobacterium smegmatis str. MC2 155] Length=912 Score = 1386 bits (3587), Expect = 0.0, Method: Compositional matrix adjust. Identities = 715/913 (79%), Positives = 788/913 (87%), Gaps = 21/913 (2%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L FTA+LPF+LDDFQ RAC ALE GHGVLVCAPTGAGKT+VGEFAVHLALA+G KCFY Sbjct 9 QLTAFTAQLPFTLDDFQVRACQALENGHGVLVCAPTGAGKTIVGEFAVHLALASGGKCFY 68 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQKH DL ARYG ++IGLLTGD S+NG+A VVVMTTEVLRNMLYA+S AL G Sbjct 69 TTPIKALSNQKHNDLVARYGAEKIGLLTGDQSINGDADVVVMTTEVLRNMLYANSQALHG 128 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LSYVVMDEVHFLADRMRG VWEEVIL LPD+V +VSLSATVSNAEEFGGWIQTVRGDTTV Sbjct 129 LSYVVMDEVHFLADRMRGAVWEEVILHLPDEVLLVSLSATVSNAEEFGGWIQTVRGDTTV 188 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMADWQP- 244 VVDEHRPVPL QH++VGKR+FDLF E V+ ELLRHI+HRREADR+ DWQP Sbjct 189 VVDEHRPVPLSQHMMVGKRLFDLF-----ERSSSTLVDPELLRHISHRREADRLMDWQPR 243 Query 245 RRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEE 304 R GRP FYRPPGRPEVI LD GLLPAITFVFSRAGCDAAV QCLRS LRLT+ EE Sbjct 244 GRGRGGRPQFYRPPGRPEVITALDDAGLLPAITFVFSRAGCDAAVKQCLRSSLRLTTREE 303 Query 305 RARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLV 364 RARIAE++D RC DL +SDL VL Y+EWREGLLRGLAAHHAGMLP FRHTVEELFTAGLV Sbjct 304 RARIAEIVDRRCSDLNESDLIVLDYHEWREGLLRGLAAHHAGMLPTFRHTVEELFTAGLV 363 Query 365 KAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAV 424 KAVFATETLALGINMPARTVVLERLVKFNGEQH+PLTPGEYTQLTGRAGRRGIDVEGHAV Sbjct 364 KAVFATETLALGINMPARTVVLERLVKFNGEQHLPLTPGEYTQLTGRAGRRGIDVEGHAV 423 Query 425 VIWHPE---IEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQY 481 V+W P+ EP+EVAGLASTRTFPLRSSFAPSYNMTINLV MGPQQAH LLE+SFAQY Sbjct 424 VLWRPDDSTAEPAEVAGLASTRTFPLRSSFAPSYNMTINLVQHMGPQQAHELLERSFAQY 483 Query 482 QADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRR 541 QADRSVVGLVRGI RG R+LGE+AAE+GG D+ +++YARLRA++ E ERAQ+RASRLQRR Sbjct 484 QADRSVVGLVRGIRRGERMLGELAAEIGGKDSAVIDYARLRAKIGERERAQSRASRLQRR 543 Query 542 QAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYSG 601 +AATDALA LR+GDIITITHGRRGGLAVVLE+A+DRDDPRPLVLTEH+WAGRISSADYSG Sbjct 544 RAATDALADLRKGDIITITHGRRGGLAVVLEAAQDRDDPRPLVLTEHKWAGRISSADYSG 603 Query 602 -TTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFH---DPELES 657 + P+GSM+LPKRVEHRQPRVR+DLASALRSAAAGLV P+ R S G DPEL Sbjct 604 ASAPLGSMSLPKRVEHRQPRVRKDLASALRSAAAGLV-PSRR--SNRGAPERDVDPELAG 660 Query 658 SREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTE 717 RE+LR HPVH P E+Q+R AERYLRIERDN Q+++KV AATNSLARTFDR V LL+E Sbjct 661 LRERLRSHPVHKLPDREEQVRIAERYLRIERDNLQIQQKVNAATNSLARTFDRIVALLSE 720 Query 718 REFID----GPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVV 773 R +I+ G A P VTD GRLLARIYSESDLLVAECLR GAW+GL+PAELAGV+SAV+ Sbjct 721 RGYIEAGDGGDAGQPRVTDAGRLLARIYSESDLLVAECLRAGAWDGLEPAELAGVLSAVL 780 Query 774 YETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIY 833 YE+R GD QG P G DVPT LRQAL +T RLS LR+DEQ HRI P REPD+GFV +Y Sbjct 781 YESR-GDAQGVPAGTDVPTAGLRQALVRTRRLSAALRSDEQRHRIAPGREPDEGFVTAVY 839 Query 834 RWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAI 893 RW+ TGDLA+ALAA+D+ G+GSPL AGDFVRWCRQVLDLLDQVRNAAP P LR TAKRAI Sbjct 840 RWATTGDLASALAASDITGTGSPLSAGDFVRWCRQVLDLLDQVRNAAPTPSLRNTAKRAI 899 Query 894 GDIRRGVVAVDAG 906 D+RRGVVAVDAG Sbjct 900 NDVRRGVVAVDAG 912 >gi|289570205|ref|ZP_06450432.1| superfamily II RNA helicase [Mycobacterium tuberculosis T17] gi|289543959|gb|EFD47607.1| superfamily II RNA helicase [Mycobacterium tuberculosis T17] Length=681 Score = 1356 bits (3509), Expect = 0.0, Method: Compositional matrix adjust. Identities = 680/681 (99%), Positives = 681/681 (100%), Gaps = 0/681 (0%) Query 226 LLRHIAHRREADRMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGC 285 +LRHIAHRREADRMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGC Sbjct 1 MLRHIAHRREADRMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGC 60 Query 286 DAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHA 345 DAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHA Sbjct 61 DAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHA 120 Query 346 GMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEY 405 GMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEY Sbjct 121 GMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEY 180 Query 406 TQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRM 465 TQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRM Sbjct 181 TQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRM 240 Query 466 GPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARV 525 GPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARV Sbjct 241 GPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARV 300 Query 526 SELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVL 585 SELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVL Sbjct 301 SELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVL 360 Query 586 TEHRWAGRISSADYSGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVS 645 TEHRWAGRISSADYSGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVS Sbjct 361 TEHRWAGRISSADYSGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVS 420 Query 646 EAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLA 705 EAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLA Sbjct 421 EAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLA 480 Query 706 RTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAEL 765 RTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAEL Sbjct 481 RTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAEL 540 Query 766 AGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPD 825 AGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPD Sbjct 541 AGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPD 600 Query 826 DGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPEL 885 DGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPEL Sbjct 601 DGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPEL 660 Query 886 RATAKRAIGDIRRGVVAVDAG 906 RATAKRAIGDIRRGVVAVDAG Sbjct 661 RATAKRAIGDIRRGVVAVDAG 681 >gi|336462033|gb|EGO40881.1| superfamily II RNA helicase [Mycobacterium avium subsp. paratuberculosis S397] Length=823 Score = 1346 bits (3484), Expect = 0.0, Method: Compositional matrix adjust. Identities = 688/810 (85%), Positives = 734/810 (91%), Gaps = 19/810 (2%) Query 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61 TEL EL RF++ELPF+LD FQ+RAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 14 TELVELTRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 73 Query 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSP 121 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGD+SVN +APVVVMTTEVLRNMLYADSP Sbjct 74 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLYADSP 133 Query 122 ALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRG 181 ALQGLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVRG Sbjct 134 ALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVRG 193 Query 182 DTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQ------PQVNRELLRHIAHRRE 235 DTTVVVDEHRPVPLWQHVLVGKR+FDLFDYR EA GQ P+VN +LLRHIAHRRE Sbjct 194 DTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAEAPGQPGAGREPRVNPDLLRHIAHRRE 253 Query 236 ADRMADWQPRR---RG-----SGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDA 287 ADR++DWQPRR RG +GRP FYR PGRP+VIA LDAEGLLPAITFVFSRAGCDA Sbjct 254 ADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVIATLDAEGLLPAITFVFSRAGCDA 313 Query 288 AVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGM 347 AV QCLRSPL+LT++EER +IAEVI+HRCGDLAD+DLAVLGYYEWREGLLRGLAAHHAGM Sbjct 314 AVQQCLRSPLQLTTQEERVQIAEVIEHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGM 373 Query 348 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQ 407 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH+ LTPGEYTQ Sbjct 374 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQ 433 Query 408 LTGRAGRRGIDVEGHAVVIWHP---EIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHR 464 LTGRAGRRGIDVEGHAVV+W+P EPS VAGLASTRTFPLRSSFAPSYNMTINLV + Sbjct 434 LTGRAGRRGIDVEGHAVVLWNPTEETTEPSAVAGLASTRTFPLRSSFAPSYNMTINLVQQ 493 Query 465 MGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRAR 524 MGP+QAHRLLEQSFAQYQADRSVVGLVRGIERG +L EIAAELGG APILEYAR+RAR Sbjct 494 MGPEQAHRLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGGPKAPILEYARMRAR 553 Query 525 VSELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLV 584 +SE+ERAQ+RASRL RRQAA+DALAALRRGDII I HGRRGGLAVVLESARD DPRPLV Sbjct 554 ISEMERAQSRASRLHRRQAASDALAALRRGDIINIAHGRRGGLAVVLESARDSSDPRPLV 613 Query 585 LTEHRWAGRISSADYSGTT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARR 643 LTE+RWAGRISSADYSG + PVGSM LPKRVEHRQPRVRRDLASALRSAAAGL IPA RR Sbjct 614 LTENRWAGRISSADYSGNSAPVGSMPLPKRVEHRQPRVRRDLASALRSAAAGLSIPAKRR 673 Query 644 VSEAG-GFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATN 702 ++ GFHDPEL S REQLRRHP H +PGLE Q+RQAERYLRIERDNAQLE+KVA ATN Sbjct 674 RGDSDEGFHDPELASLREQLRRHPSHHTPGLEAQVRQAERYLRIERDNAQLEKKVATATN 733 Query 703 SLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKP 762 SLARTFDR VGLLTER FI+ DP VTDDGRLLARIYSESDLLVAECLRTGAW GLKP Sbjct 734 SLARTFDRIVGLLTERGFIERRDGDPRVTDDGRLLARIYSESDLLVAECLRTGAWSGLKP 793 Query 763 AELAGVVSAVVYETRGGDGQGAPFGADVPT 792 AELA VVS+V+YE+RGG+G G F A+ PT Sbjct 794 AELAAVVSSVLYESRGGEGPGTAFAAEAPT 823 >gi|41407926|ref|NP_960762.1| HelY [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396280|gb|AAS04145.1| HelY [Mycobacterium avium subsp. paratuberculosis K-10] Length=821 Score = 1345 bits (3480), Expect = 0.0, Method: Compositional matrix adjust. Identities = 688/810 (85%), Positives = 733/810 (91%), Gaps = 19/810 (2%) Query 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61 TEL EL RF++ELPF+LD FQ+RAC+ALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 12 TELVELTRFSSELPFALDGFQRRACAALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGG 71 Query 62 KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSP 121 KCFYTTPLKALSNQKHTDLTARYGRD+IGLLTGD+SVN +APVVVMTTEVLRNMLYADSP Sbjct 72 KCFYTTPLKALSNQKHTDLTARYGRDRIGLLTGDMSVNADAPVVVMTTEVLRNMLYADSP 131 Query 122 ALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRG 181 ALQGLSYVVMDEVHFLADRMRGPVWEEVIL LPD+VRVVSLSATVSNAEEFGGWIQTVRG Sbjct 132 ALQGLSYVVMDEVHFLADRMRGPVWEEVILHLPDEVRVVSLSATVSNAEEFGGWIQTVRG 191 Query 182 DTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQ------PQVNRELLRHIAHRRE 235 DTTVVVDEHRPVPLWQHVLVGKR+FDLFDYR EA GQ P+VN +LLRHIAHRRE Sbjct 192 DTTVVVDEHRPVPLWQHVLVGKRLFDLFDYRNAEAPGQPGAGREPRVNPDLLRHIAHRRE 251 Query 236 ADRMADWQPRR---RG-----SGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDA 287 ADR++DWQPRR RG +GRP FYR PGRP+VIA LDAEGLLPAITFVFSRAGCDA Sbjct 252 ADRLSDWQPRRGAGRGRPPARAGRPRFYRTPGRPDVIATLDAEGLLPAITFVFSRAGCDA 311 Query 288 AVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGM 347 AV QCLRSPL+LT++EER +IAEVI+HRCGDLAD+DLAVLGYYEWREGLLRGLAAHHAGM Sbjct 312 AVQQCLRSPLQLTTQEERVQIAEVIEHRCGDLADADLAVLGYYEWREGLLRGLAAHHAGM 371 Query 348 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQ 407 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH+ LTPGEYTQ Sbjct 372 LPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHVALTPGEYTQ 431 Query 408 LTGRAGRRGIDVEGHAVVIWHP---EIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHR 464 LTGRAGRRGIDVEGHAVV+W+P EPS VAGLASTRTFPLRSSFAPSYNMTINLV + Sbjct 432 LTGRAGRRGIDVEGHAVVLWNPTEETTEPSAVAGLASTRTFPLRSSFAPSYNMTINLVQQ 491 Query 465 MGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRAR 524 MGP+QAHRLLEQSFAQYQADRSVVGLVRGIERG +L EIAAELGG APILEYAR+RAR Sbjct 492 MGPEQAHRLLEQSFAQYQADRSVVGLVRGIERGQAMLDEIAAELGGPKAPILEYARMRAR 551 Query 525 VSELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLV 584 +SE+ERAQ RASRL RRQAA+DALAALRRGDII I HGRRGGLAVVLESARD DPRPLV Sbjct 552 ISEMERAQTRASRLHRRQAASDALAALRRGDIINIAHGRRGGLAVVLESARDSSDPRPLV 611 Query 585 LTEHRWAGRISSADYSGTT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARR 643 LTE+RWAGRISSADYSG + PVGSM LPKRVEHRQPRVRRDLASALRSAAAGL IPA RR Sbjct 612 LTENRWAGRISSADYSGNSAPVGSMPLPKRVEHRQPRVRRDLASALRSAAAGLSIPAKRR 671 Query 644 VSEAG-GFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATN 702 ++ GFHDPEL S REQLRRHP H +PGLE Q+RQAERYLRIERDNAQLE+KVA ATN Sbjct 672 RGDSDEGFHDPELASLREQLRRHPSHHTPGLEAQVRQAERYLRIERDNAQLEKKVATATN 731 Query 703 SLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKP 762 SLARTFDR VGLLTER FI+ DP VTDDGRLLARIYSESDLLVAECLRTGAW GLKP Sbjct 732 SLARTFDRIVGLLTERGFIERRDGDPRVTDDGRLLARIYSESDLLVAECLRTGAWSGLKP 791 Query 763 AELAGVVSAVVYETRGGDGQGAPFGADVPT 792 AELA VVS+V+YE+RGG+G G F A+ PT Sbjct 792 AELAAVVSSVLYESRGGEGPGTAFAAEAPT 821 >gi|333990754|ref|YP_004523368.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. JDM601] gi|333486722|gb|AEF36114.1| ATP-dependent DNA helicase HelY [Mycobacterium sp. JDM601] Length=928 Score = 1333 bits (3450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 705/917 (77%), Positives = 773/917 (85%), Gaps = 16/917 (1%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 EL RFTA+LPF LDDFQ+RAC AL G GVLVCAPTGAGKTVVGEFAVHLALAAG KCFY Sbjct 12 ELTRFTADLPFGLDDFQRRACLALADGRGVLVCAPTGAGKTVVGEFAVHLALAAGGKCFY 71 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQKHTDL ARYG ++GLLTGDLSVN NAPVVVMTTEVLRNMLYADSPALQG Sbjct 72 TTPIKALSNQKHTDLVARYGEHRVGLLTGDLSVNANAPVVVMTTEVLRNMLYADSPALQG 131 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LS+VVMDEVHFLADRMRG VWEEVIL L D+VR+VSLSATVSNAEEFGGWIQTVRGDT V Sbjct 132 LSHVVMDEVHFLADRMRGAVWEEVILHLADEVRLVSLSATVSNAEEFGGWIQTVRGDTAV 191 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGE----AEGQPQVNRELLRHIAHRREADRMAD 241 VVDEHRPVPLWQH++VGKR+FDLF+ R A G+P+V+ +LLRHIAHRREADR+ D Sbjct 192 VVDEHRPVPLWQHMMVGKRLFDLFESRPDTDGQGAAGRPRVDPQLLRHIAHRREADRITD 251 Query 242 WQPRRRGSGRPGF---YRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 W PRR G YRPP RP+VIA LD+ GLLPAITFVFSR GCDAAV QCLRSPLR Sbjct 252 WSPRRHGGRGGPGRPSYRPPMRPDVIAVLDSAGLLPAITFVFSRVGCDAAVKQCLRSPLR 311 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 LT+E ERARIAEVIDHRCGDLAD DL VLGYYEWREGLLRGLA HHAG+LP FRHTVEEL Sbjct 312 LTTESERARIAEVIDHRCGDLADDDLDVLGYYEWREGLLRGLAGHHAGLLPVFRHTVEEL 371 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 F AGLVKAVFATETLALGINMPARTVVLERLVKFNGEQH LTPGEYTQLTGRAGRRGID Sbjct 372 FAAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRAGRRGID 431 Query 419 VEGHAVVIWHP---EIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLE 475 VEGHAVV+WHP +P +VAGLASTRTFPLRSSFAPSYNMTINLV +MGP+QAHRLLE Sbjct 432 VEGHAVVLWHPGESTADPEQVAGLASTRTFPLRSSFAPSYNMTINLVQQMGPEQAHRLLE 491 Query 476 QSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARA 535 QSFAQYQADRSVVGLVRG+ERG R L EIAAELGG +P+L+YARLRA++SE ERAQARA Sbjct 492 QSFAQYQADRSVVGLVRGVERGERTLEEIAAELGGRHSPVLDYARLRAKISERERAQARA 551 Query 536 SRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRIS 595 SRLQRR+AA+DALAALR+GDIIT+ GRRGGLAVVL++ RD D+PRPLVLTEHRWAGRIS Sbjct 552 SRLQRRRAASDALAALRKGDIITLARGRRGGLAVVLQADRDSDEPRPLVLTEHRWAGRIS 611 Query 596 SADYSGTT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFH--- 651 +ADYSG P+GSM LPKRVEHRQPRVRRDLASALRSAA GL P R G Sbjct 612 AADYSGAEGPIGSMNLPKRVEHRQPRVRRDLASALRSAAEGLAAPKPRGRRGGGAQEDPV 671 Query 652 DPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRF 711 DPEL + R+++R HP H+ ED++R AERYLR+E DNAQL +KV AATNSLARTFDR Sbjct 672 DPELAALRQRMRDHPSHSDADREDKVRTAERYLRVEADNAQLRKKVDAATNSLARTFDRI 731 Query 712 VGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSA 771 VGLL ER FI DP VT DGR+LARIYSESDLLVAECLRTGAW+GL PAELA VVSA Sbjct 732 VGLLAERGFITTGDGDPKVTADGRMLARIYSESDLLVAECLRTGAWDGLGPAELAAVVSA 791 Query 772 VVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRV 831 V+YE+RG DG P PT +R+AL +T +LS TLRADE HRI PSREPD+GFV Sbjct 792 VLYESRGADGPDGPPTPYPPTEPVRRALHRTRKLSATLRADESRHRIAPSREPDEGFVAA 851 Query 832 IYRWSRTGDLAAALAAAD--VNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATA 889 +YRW+RTGDLA+AL A++ GS + L AGDFVRWCRQVLDLLDQ+RNAAP ELR TA Sbjct 852 VYRWARTGDLASALDASEGLAAGSAASLSAGDFVRWCRQVLDLLDQLRNAAPGAELRTTA 911 Query 890 KRAIGDIRRGVVAVDAG 906 K+AI + RGVVAVDAG Sbjct 912 KQAIDTVLRGVVAVDAG 928 >gi|120404412|ref|YP_954241.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957230|gb|ABM14235.1| DEAD/DEAH box helicase domain protein [Mycobacterium vanbaalenii PYR-1] Length=929 Score = 1318 bits (3410), Expect = 0.0, Method: Compositional matrix adjust. Identities = 689/914 (76%), Positives = 771/914 (85%), Gaps = 18/914 (1%) Query 10 FTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPL 69 FTA LPF LDDFQ+RAC AL +GHGVLVCAPTGAGKTVVGEFAVHLALAAG KCFYTTP+ Sbjct 17 FTALLPFELDDFQRRACEALAQGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFYTTPI 76 Query 70 KALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYV 129 KALSNQKH DL RYG +IGLLTGD ++NG+A VVVMTTEVLRNMLYADS ALQGLSYV Sbjct 77 KALSNQKHNDLVLRYGPKRIGLLTGDQAINGDADVVVMTTEVLRNMLYADSRALQGLSYV 136 Query 130 VMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 189 VMDEVHFLADRMRG VWEEVIL LP++VR+VSLSATVSNAEEFGGWI+TVRGDTTVVVDE Sbjct 137 VMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWIKTVRGDTTVVVDE 196 Query 190 HRPVPLWQHVLVGKRMFDLFDYRI-GEAEGQPQVNRELLRHIAHRREADRMADWQPRRRG 248 HRPVPLWQHV+VGKR+ DLFDYR G A V+ ELLRHIAHRREA+R+ DWQPR RG Sbjct 197 HRPVPLWQHVMVGKRLLDLFDYRASGPAGRNLLVDPELLRHIAHRREAERLTDWQPRGRG 256 Query 249 -SGRP-GFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEERA 306 SGRP G YR PGR EVI L + LLPAITF+FSRAGCDAAV QCLRS LRLT++EERA Sbjct 257 RSGRPSGLYRTPGRAEVINVLAQDNLLPAITFIFSRAGCDAAVKQCLRSSLRLTTDEERA 316 Query 307 RIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVKA 366 RIA+++D R DL DSDL VL ++EWREGLLRGLAAHHAGMLP FRHTVEELFTAGLVKA Sbjct 317 RIADIVDRRTADLNDSDLIVLDFHEWREGLLRGLAAHHAGMLPVFRHTVEELFTAGLVKA 376 Query 367 VFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVI 426 VFATETLALGINMPARTVVLE+LVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVV+ Sbjct 377 VFATETLALGINMPARTVVLEKLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVVL 436 Query 427 WHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADRS 486 W+P+++P+EVAGLASTRTFPLRSSFAP+YNMTINLVH+MGP QAH+LLE+SFAQYQADRS Sbjct 437 WNPDVDPAEVAGLASTRTFPLRSSFAPTYNMTINLVHQMGPAQAHQLLERSFAQYQADRS 496 Query 487 VVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRRQAATD 546 VVGLVRG+ERG R+LGE+AAE+GG D+ IL+Y RLRA++S+ ERAQ+RASRLQRRQA + Sbjct 497 VVGLVRGVERGERMLGELAAEMGGPDSAILDYVRLRAQISQRERAQSRASRLQRRQATNE 556 Query 547 ALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYSGTT-PV 605 ALAALR GDIITIT GRRGGLAVVLE ARD +DPRPLVL+EHRWAGRISSADY+G P+ Sbjct 557 ALAALRPGDIITITAGRRGGLAVVLEPARDDEDPRPLVLSEHRWAGRISSADYTGAPGPL 616 Query 606 GSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAG----GFHDPELESSREQ 661 G M+LPKR+EHR PRVRRDLASALRSAAA L +P+ R +G DPEL R++ Sbjct 617 GKMSLPKRIEHRNPRVRRDLASALRSAAARLDVPSVRASRRSGPPPEHDVDPELNVLRDR 676 Query 662 LRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFI 721 +R H H P E R AERYLRIE DN QL +K+AAATNSLA+TFDR V LLT+R FI Sbjct 677 MRAHRAHGLPDREKLARVAERYLRIEEDNEQLRKKIAAATNSLAQTFDRIVVLLTDRGFI 736 Query 722 DGPATD---------PVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAV 772 D P VTDDGRLLARIYSESDLLVAECLR G WEGL AELA +SAV Sbjct 737 TVDGVDETTTVEQDTPAVTDDGRLLARIYSESDLLVAECLRAGVWEGLDSAELAAALSAV 796 Query 773 VYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVI 832 +YE+R +G G G+D+PT RLR+AL QT RL + LRADEQ HR+ PSREPDDGFV + Sbjct 797 LYESR-REGHGPGDGSDIPTGRLRRALNQTRRLWSELRADEQRHRLPPSREPDDGFVAAV 855 Query 833 YRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRA 892 +RW+ TGDLA+AL A+D G+G+ + AGDFVRWCRQVLDL DQVRNAAP+ LRATAKRA Sbjct 856 HRWASTGDLASALTASDHAGTGASMSAGDFVRWCRQVLDLADQVRNAAPSAALRATAKRA 915 Query 893 IGDIRRGVVAVDAG 906 I D+RRGVVAVDAG Sbjct 916 INDVRRGVVAVDAG 929 >gi|145223682|ref|YP_001134360.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145216168|gb|ABP45572.1| DEAD/DEAH box helicase domain protein [Mycobacterium gilvum PYR-GCK] Length=921 Score = 1290 bits (3338), Expect = 0.0, Method: Compositional matrix adjust. Identities = 680/912 (75%), Positives = 760/912 (84%), Gaps = 14/912 (1%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L FTA LPFSLD FQ+RAC AL +GHGVLVCAPTGAGKTVVGEFAVHLAL AG KCFYT Sbjct 12 LTAFTALLPFSLDGFQRRACEALAQGHGVLVCAPTGAGKTVVGEFAVHLALEAGRKCFYT 71 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQKH DL RYG ++IGLLTGD ++NG+A +VVMTTEVLRNMLYADSPAL GL Sbjct 72 TPIKALSNQKHNDLVRRYGPERIGLLTGDQAINGDADIVVMTTEVLRNMLYADSPALHGL 131 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 S+VVMDEVHFLADRMRG VWEEVIL LP++VR+VSLSATVSNAEEFGGWI+TVRGDTTVV Sbjct 132 SHVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWIKTVRGDTTVV 191 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ-VNRELLRHIAHRREADRMADWQPR 245 VDEHRPVPLWQHV+VG+R+ DLFDYR G+ V+ ELLRHIAHRREA+R+ DWQPR Sbjct 192 VDEHRPVPLWQHVMVGRRLLDLFDYRGSGPSGRDLLVDPELLRHIAHRREAERLVDWQPR 251 Query 246 RRGSGR----PGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTS 301 RG R P YR PGR EVI L+ LLPAITF+FSRAGCDAAV QCLRS LRLT+ Sbjct 252 GRGRDRQGRQPSLYRTPGRAEVIGVLEQSRLLPAITFIFSRAGCDAAVKQCLRSSLRLTT 311 Query 302 EEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTA 361 EERARIAE++D R DL D+DL VL +++WREGLLRG+AAHHAGMLP FRHTVEELFTA Sbjct 312 NEERARIAEIVDRRTADLNDTDLVVLDFHQWREGLLRGIAAHHAGMLPTFRHTVEELFTA 371 Query 362 GLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEG 421 GLVKAVFATETLALGINMPARTVVLERLVK+NGEQHMPLTPGEYTQLTGRAGRRGIDVEG Sbjct 372 GLVKAVFATETLALGINMPARTVVLERLVKYNGEQHMPLTPGEYTQLTGRAGRRGIDVEG 431 Query 422 HAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQY 481 HAVV+W+P+++P+EVAGLASTRTFPLRSSFAP+YNMTINLVH+MGP QAHRLLE+SFAQY Sbjct 432 HAVVLWNPDVDPAEVAGLASTRTFPLRSSFAPTYNMTINLVHQMGPAQAHRLLERSFAQY 491 Query 482 QADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRR 541 QADRSVVGLVRG ERG R+L E+AAE+GG DAPIL+Y RLRA++SE ERAQ+RASRLQRR Sbjct 492 QADRSVVGLVRGAERGERMLAELAAEMGGPDAPILDYVRLRAQISERERAQSRASRLQRR 551 Query 542 QAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYSG 601 QA DALAALRRGDI+TI+ G+ GGLAVVLE ARD DDPRPLVL+EHRWAGRISSADY Sbjct 552 QAINDALAALRRGDIVTISQGKHGGLAVVLEPARDADDPRPLVLSEHRWAGRISSADYGA 611 Query 602 TT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAG---GFHDPELES 657 P+G MTLPK VEHR PR RRDLASALRSAAA L +P+A+R G G DPEL S Sbjct 612 AAGPIGKMTLPKHVEHRNPRARRDLASALRSAAATLDVPSAQRRRGRGPVDGDVDPELIS 671 Query 658 SREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTE 717 R +LR H H+ E++ R AERYLRIERDN QL +K+A+ATNSLA TFDR V LLTE Sbjct 672 LRNRLRAHSAHSLDDREERARVAERYLRIERDNEQLRKKIASATNSLAVTFDRIVVLLTE 731 Query 718 REFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETR 777 R FI P P VT+DGRLL+RIYSESDLLVAECLR G WE L AEL +S+V+YE+R Sbjct 732 RGFI-APGDTPTVTEDGRLLSRIYSESDLLVAECLRAGVWEELDAAELVAALSSVLYESR 790 Query 778 GGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSR 837 DGQG G+D+PT RLR+AL +T L LR DEQ HRIT SREPD GFV VI+RW+ Sbjct 791 -RDGQGPGDGSDIPTGRLRRALNRTRALWADLRTDEQRHRITYSREPDTGFVAVIHRWAS 849 Query 838 TGD---LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIG 894 TGD AA AA+ G+ S + AGDFVRWCRQVLDL DQVRNAAP+P LRATAKRAI Sbjct 850 TGDLASALAAGAASAAGGTASSMSAGDFVRWCRQVLDLADQVRNAAPSPALRATAKRAIA 909 Query 895 DIRRGVVAVDAG 906 D+RRGVVAVDAG Sbjct 910 DVRRGVVAVDAG 921 >gi|315444009|ref|YP_004076888.1| superfamily II RNA helicase [Mycobacterium sp. Spyr1] gi|315262312|gb|ADT99053.1| superfamily II RNA helicase [Mycobacterium sp. Spyr1] Length=921 Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 679/912 (75%), Positives = 759/912 (84%), Gaps = 14/912 (1%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L FTA LPFSLD FQ+RAC AL +GHGVLVCAPTGAGKTVVGEFAVHLAL AG KCFYT Sbjct 12 LTAFTALLPFSLDGFQRRACEALAQGHGVLVCAPTGAGKTVVGEFAVHLALEAGRKCFYT 71 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQKH DL RYG ++IGLLTGD ++NG+A +VVMTTEVLRNMLYADSPAL GL Sbjct 72 TPIKALSNQKHNDLVRRYGPERIGLLTGDQAINGDADIVVMTTEVLRNMLYADSPALHGL 131 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 S+VVMDEVHFLADRMRG VWEEVIL LP++VR+VSLSATVSNAEEFGGWI+TVRGDTTVV Sbjct 132 SHVVMDEVHFLADRMRGAVWEEVILHLPEEVRLVSLSATVSNAEEFGGWIKTVRGDTTVV 191 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ-VNRELLRHIAHRREADRMADWQPR 245 VDEHRPVPLWQHV+VG+R+ DLFDYR G+ V+ ELLRHIAHRREA+R+ DWQPR Sbjct 192 VDEHRPVPLWQHVMVGRRLLDLFDYRGSGPSGRDLLVDPELLRHIAHRREAERLVDWQPR 251 Query 246 RRGSGR----PGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTS 301 RG R P YR PGR EVI L+ LLPAITF+FSRAGCDAAV QCLRS LRLT+ Sbjct 252 GRGRDRQGRQPSLYRTPGRAEVIGVLEQSRLLPAITFIFSRAGCDAAVKQCLRSSLRLTT 311 Query 302 EEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTA 361 EERARIAE++D R DL +DL VL +++WREGLLRG+AAHHAGMLP FRHTVEELFTA Sbjct 312 NEERARIAEIVDRRTADLNGTDLVVLDFHQWREGLLRGIAAHHAGMLPTFRHTVEELFTA 371 Query 362 GLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEG 421 GLVKAVFATETLALGINMPARTVVLERLVK+NGEQHMPLTPGEYTQLTGRAGRRGIDVEG Sbjct 372 GLVKAVFATETLALGINMPARTVVLERLVKYNGEQHMPLTPGEYTQLTGRAGRRGIDVEG 431 Query 422 HAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQY 481 HAVV+W+P+++P+EVAGLASTRTFPLRSSFAP+YNMTINLVH+MGP QAHRLLE+SFAQY Sbjct 432 HAVVLWNPDVDPAEVAGLASTRTFPLRSSFAPTYNMTINLVHQMGPAQAHRLLERSFAQY 491 Query 482 QADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRR 541 QADRSVVGLVRG ERG R+L E+AAE+GG DAPIL+Y RLRA++SE ERAQ+RASRLQRR Sbjct 492 QADRSVVGLVRGAERGERMLAELAAEMGGPDAPILDYVRLRAQISERERAQSRASRLQRR 551 Query 542 QAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYSG 601 QA DALAALRRGDI+TI+ G+ GGLAVVLE ARD DDPRPLVL+EHRWAGRISSADY Sbjct 552 QAINDALAALRRGDIVTISQGKHGGLAVVLEPARDADDPRPLVLSEHRWAGRISSADYGA 611 Query 602 TT-PVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAG---GFHDPELES 657 P+G MTLPK VEHR PR RRDLASALRSAAA L +P+A+R G G DPEL S Sbjct 612 AAGPIGKMTLPKHVEHRNPRARRDLASALRSAAATLDVPSAQRRRGRGPVDGDVDPELIS 671 Query 658 SREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTE 717 R +LR H H+ E++ R AERYLRIERDN QL +K+A+ATNSLA TFDR V LLTE Sbjct 672 LRNRLRAHSAHSLDDREERARVAERYLRIERDNEQLRKKIASATNSLAVTFDRIVVLLTE 731 Query 718 REFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETR 777 R FI P P VT+DGRLL+RIYSESDLLVAECLR G WE L AEL +S+V+YE+R Sbjct 732 RGFI-APGDTPTVTEDGRLLSRIYSESDLLVAECLRAGVWEELDAAELVAALSSVLYESR 790 Query 778 GGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSR 837 DGQG G+D+PT RLR+AL +T L LR DEQ HRIT SREPD GFV VI+RW+ Sbjct 791 -RDGQGTGDGSDIPTGRLRRALNRTRALWADLRTDEQRHRITYSREPDTGFVAVIHRWAS 849 Query 838 TGD---LAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIG 894 TGD AA AA+ G+ S + AGDFVRWCRQVLDL DQVRNAAP+P LRATAKRAI Sbjct 850 TGDLASALAAGAASAAGGTASSMSAGDFVRWCRQVLDLADQVRNAAPSPALRATAKRAIA 909 Query 895 DIRRGVVAVDAG 906 D+RRGVVAVDAG Sbjct 910 DVRRGVVAVDAG 921 >gi|169629275|ref|YP_001702924.1| ATP-dependent DNA helicase HelY [Mycobacterium abscessus ATCC 19977] gi|169241242|emb|CAM62270.1| Probable ATP-dependent DNA helicase HelY [Mycobacterium abscessus] Length=922 Score = 1213 bits (3139), Expect = 0.0, Method: Compositional matrix adjust. Identities = 645/918 (71%), Positives = 729/918 (80%), Gaps = 24/918 (2%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L F+ L F+LD FQ RAC+ALE GHGVLVCAPTGAGKT+VGEFAVHLALAAG KCFY Sbjct 8 QLRAFSEGLSFALDPFQVRACTALENGHGVLVCAPTGAGKTIVGEFAVHLALAAGRKCFY 67 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQKH DL + YG +++GLLTGD S+N +APVVVMTTEVLRNMLYADSPAL G Sbjct 68 TTPIKALSNQKHNDLVSVYGPEKVGLLTGDSSINSDAPVVVMTTEVLRNMLYADSPALHG 127 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LSYVVMDEVHFLADR RG VWEEVIL LP+DV + SLSATVSNAEEFGGWI+TVRGDTTV Sbjct 128 LSYVVMDEVHFLADRFRGAVWEEVILHLPEDVALASLSATVSNAEEFGGWIKTVRGDTTV 187 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFD------YRIGEAEGQP-QVNRELLRHIAHRREADR 238 VVDE RPVPLWQHV+VG+R+FDLFD R G P +V+ L R+IA RR+ADR Sbjct 188 VVDETRPVPLWQHVMVGRRLFDLFDGDEPLGRRASGGTGNPSRVDPGLTRYIAQRRQADR 247 Query 239 MADWQPRRRG------SGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQC 292 AD+ RR S P YRPP RPEVI +LD +GLLPAITF+FSRAGCD AV QC Sbjct 248 FADFDRPRRRGPQQRTSRPPTLYRPPSRPEVITRLDEDGLLPAITFIFSRAGCDGAVAQC 307 Query 293 LRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFR 352 LRS LRLT+EEER I +ID R L ++DL VLGY++WREGLLRG+AAHHAGMLP FR Sbjct 308 LRSRLRLTTEEERREIIAIIDRRTEGLPEADLDVLGYWQWREGLLRGIAAHHAGMLPVFR 367 Query 353 HTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRA 412 HTVEELFT GLVKAVFATETLALGINMPARTVVLERLVKFNGEQH LTPGEYTQLTGRA Sbjct 368 HTVEELFTKGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHAALTPGEYTQLTGRA 427 Query 413 GRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHR 472 GRRGIDVEGHAVV+W PE+EP+E+AGLASTRTFPLRSSFAPSYNMTINLVHRMGP A Sbjct 428 GRRGIDVEGHAVVLWTPEVEPTEIAGLASTRTFPLRSSFAPSYNMTINLVHRMGPDPARE 487 Query 473 LLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQ 532 LLE+SFAQYQADRSVVGLVRGIERG ++L EIA EL G D +L+Y RLRA ++E ERA Sbjct 488 LLERSFAQYQADRSVVGLVRGIERGRKMLDEIAGELDGHDGSVLQYVRLRAGLTERERAA 547 Query 533 ARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAG 592 ARASRL+RR AA DALAAL+RGD+I I HGRR G+AVVLE A D +DPRPLVLTEHRWAG Sbjct 548 ARASRLERRGAANDALAALKRGDVIAIPHGRRNGVAVVLEPAHDDEDPRPLVLTEHRWAG 607 Query 593 RISSADYS-GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAA-AGLV---IPAARRVSEA 647 RISSADYS G P+GS+ LPKRVEHRQP+VRRD+ASALRSA G V P RR Sbjct 608 RISSADYSGGAEPLGSIALPKRVEHRQPKVRRDVASALRSALDEGRVRRPQPGKRRTDGR 667 Query 648 GGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLART 707 G D +LE R ++R HPVH +P E+ R ERYLRIERDNAQL++KVAAATNSLART Sbjct 668 HGDADADLERLRREIREHPVHHAPNREELARTGERYLRIERDNAQLQKKVAAATNSLART 727 Query 708 FDRFVGLLTEREFIDGPATDPV-VTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELA 766 FDR + LL ER +++ A + VT DG LLARIYSESDLLVAECLR G W GLKPAELA Sbjct 728 FDRILALLAERGYVEDSAELGMKVTQDGMLLARIYSESDLLVAECLRRGLWAGLKPAELA 787 Query 767 GVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDD 826 V SAV+YE+RG + PT LR AL +T R LR DEQ H ++P+RE D+ Sbjct 788 AVASAVLYESRGDTVSAT---GEAPTAALRGALAETHRALARLRRDEQQHHLSPTREIDE 844 Query 827 GFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELR 886 GFV +YRW+ TGDLAA+L AA G+ P AGDFVRWCRQV+DLLDQ+ AAP+ E+R Sbjct 845 GFVAAVYRWATTGDLAASLEAAGDTGTALP--AGDFVRWCRQVVDLLDQIHKAAPDAEVR 902 Query 887 ATAKRAIGDIRRGVVAVD 904 + AK A+GD+RRGVVAVD Sbjct 903 SAAKAAVGDVRRGVVAVD 920 >gi|325676819|ref|ZP_08156492.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707] gi|325552367|gb|EGD22056.1| DEAD/DEAH box family ATP-dependent RNA helicase [Rhodococcus equi ATCC 33707] Length=898 Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/902 (63%), Positives = 671/902 (75%), Gaps = 14/902 (1%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L FT++L F LD FQ AC+ALE GHGVLVCAPTGAGKTVVGEFAVHLAL +G KCFYT Sbjct 7 LASFTSQLSFPLDPFQLEACAALEAGHGVLVCAPTGAGKTVVGEFAVHLALESGRKCFYT 66 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQK +L+ARYG +GLLTGD S+N +APVVVMTTEVLRNMLYADSP L+GL Sbjct 67 TPIKALSNQKFNELSARYGSGAVGLLTGDTSINSDAPVVVMTTEVLRNMLYADSPTLRGL 126 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 S+VVMDEVH+LADR RG VWEEVIL LP+DVR+VSLSATVSNAEEFG W++TVRGDTT+V Sbjct 127 SHVVMDEVHYLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGAWMETVRGDTTIV 186 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIGE-AEGQPQVNRELLRHIAHRREADRMADWQPR 245 VDE RP+PL QH+LVG+R+FDLFD + A Q V+ +L+RH+ R DRM W+PR Sbjct 187 VDETRPIPLSQHILVGRRLFDLFDAKAAAGASHQVVVDPDLVRHVKQRLALDRMNSWEPR 246 Query 246 RRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEER 305 RG R +RP RPEVIA+LD EGLLPAITF+FSRAGC+AA+ QC+RS LRLT+ E+ Sbjct 247 GRGGYRSNDFRPLPRPEVIARLDEEGLLPAITFIFSRAGCEAALAQCVRSKLRLTTPEQT 306 Query 306 ARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVK 365 ARI E+ID L DL VLGY+ WRE L RG AAHHAGMLPAF+ TVEELF GLV+ Sbjct 307 ARIREIIDEHTRHLPRPDLEVLGYWSWREALERGFAAHHAGMLPAFKETVEELFVNGLVR 366 Query 366 AVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVV 425 AVFATETLALGINMPAR+VVLERLVK+NG+ H LTPGEYTQLTGRAGRRGIDVEGHAVV Sbjct 367 AVFATETLALGINMPARSVVLERLVKYNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVV 426 Query 426 IWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADR 485 +W P +EP++VAGLASTRTFPLRSSF P YNM+INLV RMG ++ LLE+SFAQ+QADR Sbjct 427 LWQPGVEPTDVAGLASTRTFPLRSSFRPGYNMSINLVDRMGAVESRALLERSFAQFQADR 486 Query 486 SVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRRQAAT 545 SVVGL R IER L ++ +LGG+D EY R+R ++ ER R R RR A+ Sbjct 487 SVVGLTRSIERNEAALTDLRDKLGGADGEYFEYFRIREQLRSRERMLERQGRADRRGASV 546 Query 546 DALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS-GTTP 604 +L LRRGD++ I G+R GLAVVLE ++ +DPRPLVLTE +WAGR+S+AD+ Sbjct 547 SSLVDLRRGDVVAIPVGKRSGLAVVLEPDQNPNDPRPLVLTEDKWAGRVSAADFPVPARS 606 Query 605 VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSREQLRR 664 +G + LP+ V+HR RVRRDLASALRS ++P R G D E+ + R+ LR Sbjct 607 LGKLRLPRHVDHRTARVRRDLASALRSTG---IVPPRRPKRGKAGREDSEVVALRKALRD 663 Query 665 HPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFID-G 723 HP H+ P E R ERY R+ R+ L +K AA TNSLARTFDR V LLTER FI G Sbjct 664 HPCHSRPDREQLSRIGERYNRLARETESLRQKSAATTNSLARTFDRIVALLTERGFISAG 723 Query 724 PATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQG 783 P DP T++G+ LARIYSESDLLVAECLR GAW+GL PAELAGVVS+VVYE+R Q Sbjct 724 P--DPKATEEGQRLARIYSESDLLVAECLRRGAWKGLTPAELAGVVSSVVYESR----QD 777 Query 784 APFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGDLAA 843 A PT LRQAL +T R+ +L+ADE H++ +REPD GFV IY+W+ L Sbjct 778 ADAPDRGPTAPLRQALAETMRVWGSLQADEIRHKLPVTREPDSGFVTAIYQWANDEPLVD 837 Query 844 ALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGVVAV 903 L AA G L AGDFVRWCRQV+DLLDQV AP+P + A RAIG IRRGVVA+ Sbjct 838 VLVAA--GSGGKELAAGDFVRWCRQVIDLLDQVHATAPDPAVAKAAARAIGSIRRGVVAI 895 Query 904 DA 905 A Sbjct 896 SA 897 >gi|54025131|ref|YP_119373.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] gi|54016639|dbj|BAD58009.1| putative ATP-dependent RNA helicase [Nocardia farcinica IFM 10152] Length=899 Score = 1083 bits (2802), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/902 (64%), Positives = 669/902 (75%), Gaps = 15/902 (1%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 EL RF+ EL F LD FQ+ AC ALE GHGVLVCAPTGAGKTVVGEFAVHLAL +G KCFY Sbjct 10 ELARFSQELSFDLDPFQREACQALEAGHGVLVCAPTGAGKTVVGEFAVHLALVSGGKCFY 69 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK DLT RYGR +GLLTGD S+N +APVVVMTTEVLRNMLYA S AL+G Sbjct 70 TTPIKALSNQKFADLTRRYGRASVGLLTGDQSINPDAPVVVMTTEVLRNMLYASSDALRG 129 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LSYVVMDEVH+LADR RG VWEEVIL LP DVR+VSLSATVSNAEEFG W++TVRGDT V Sbjct 130 LSYVVMDEVHYLADRFRGAVWEEVILHLPADVRLVSLSATVSNAEEFGAWMETVRGDTAV 189 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRMADWQPR 245 VVDE RPVPLWQHV+VG+RMFDLFD + ++ + V+ +L+R+I HR +ADR+ W Sbjct 190 VVDETRPVPLWQHVMVGRRMFDLFDTK--SSDQKVIVDEDLVRYIRHREQADRINGWGGP 247 Query 246 RRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEER 305 R G +RP RPEV+A+LD EGLLPAITF+FSRAGCD A+ QCLRS L L+ E+ Sbjct 248 RGRGGPRRDFRPLPRPEVLARLDEEGLLPAITFIFSRAGCDGALAQCLRSRLDLSRPEDA 307 Query 306 ARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVK 365 I +I+ G+L SDL VLGY+EWRE L RGLAAHHAGMLPAFRHTVEELF GLV+ Sbjct 308 DEIDAIIEKHTGELPKSDLEVLGYWEWREALHRGLAAHHAGMLPAFRHTVEELFVRGLVR 367 Query 366 AVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVV 425 AVFATETLALGINMPARTVVLERLVKFNGE H LTPGEYTQLTGRAGRRGIDVEGHAVV Sbjct 368 AVFATETLALGINMPARTVVLERLVKFNGESHAELTPGEYTQLTGRAGRRGIDVEGHAVV 427 Query 426 IWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADR 485 +W PE++ S VAGLASTRT+PLRSSF P YNM+INL+ RMG +A LLE+SFAQ+QADR Sbjct 428 LWQPEVDTSAVAGLASTRTYPLRSSFRPGYNMSINLIDRMGAAEARALLERSFAQFQADR 487 Query 486 SVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRRQAAT 545 SVVGLVRGIER L + +LGG++ L+Y LR R+ + ER A+ SR RR AA Sbjct 488 SVVGLVRGIERNEAQLARLRDQLGGAEGGFLDYIALRERIKQRERQLAQQSRADRRGAAV 547 Query 546 DALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS-GTTP 604 AL LRRGD++ I GRR GLAV+LE DPRPLVLTE +WAGR+S AD+ Sbjct 548 RALTTLRRGDVVAIPSGRRAGLAVILEPDATPHDPRPLVLTEDKWAGRVSVADFPVPAEA 607 Query 605 VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPA-ARRVSEAGGFHDPELESSREQLR 663 +G M LP+RV+HR R RRDLASALRS G+ P RR + D EL + R LR Sbjct 608 LGHMRLPRRVDHRTARARRDLASALRS--TGITAPGRQRRGRHSDAAEDRELATLRRTLR 665 Query 664 RHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFIDG 723 HP H+ P E R ERY R+ R+ + +KVAA TNSLARTFDR +GLL ER F+ Sbjct 666 AHPAHSRPDREQLSRIGERYNRMLRETETMRQKVAATTNSLARTFDRILGLLEERGFVH- 724 Query 724 PATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQG 783 + VT DGR LARIY+ESDL+VAECLR G W GL PAELAGVVS +VYE+R G Sbjct 725 ---EGEVTADGRRLARIYAESDLVVAECLRRGVWRGLGPAELAGVVSVLVYESRQEGGYL 781 Query 784 APFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGDLAA 843 P G PTP +R+A+ T + + LR DE H++ P+REPD GFV +Y+W+R LA Sbjct 782 GPAG---PTPPVRRAVGATVDVWSELRTDEARHKLPPTREPDLGFVTGVYKWARGDGLAE 838 Query 844 ALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGVVAV 903 AL A G PL AGDFVRWCRQV+DLLDQ++ A + E+ +TA +A+ IRRGVVAV Sbjct 839 ALLAG--GDQGVPLSAGDFVRWCRQVIDLLDQIQGTADDTEVASTAAKAVRAIRRGVVAV 896 Query 904 DA 905 DA Sbjct 897 DA 898 >gi|312139730|ref|YP_004007066.1| dead/deah box helicase [Rhodococcus equi 103S] gi|311889069|emb|CBH48382.1| putative DEAD/DEAH box helicase [Rhodococcus equi 103S] Length=898 Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 568/903 (63%), Positives = 670/903 (75%), Gaps = 14/903 (1%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L FT++L F LD FQ AC+ALE GHGVLVCAPTGAGKTVVGEFAVHLAL +G KCFYT Sbjct 7 LASFTSQLSFPLDPFQLEACAALEAGHGVLVCAPTGAGKTVVGEFAVHLALESGRKCFYT 66 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQK +L+ARYG D +GLLTGD S+N +APVVVMTTEVLRNMLYADSP L+GL Sbjct 67 TPIKALSNQKFNELSARYGSDAVGLLTGDTSINSDAPVVVMTTEVLRNMLYADSPTLRGL 126 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 S+VVMDEVH+LADR RG VWEEVIL LP+DVR+VSLSATVSNAEEFG W++TVRGDTT+V Sbjct 127 SHVVMDEVHYLADRFRGAVWEEVILHLPEDVRLVSLSATVSNAEEFGAWMETVRGDTTIV 186 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIGE-AEGQPQVNRELLRHIAHRREADRMADWQPR 245 VDE RP+PL QH+LVG+R+FDLFD + A Q V+ +L+RH+ R DRM W+PR Sbjct 187 VDETRPIPLSQHILVGRRLFDLFDAKAAAGASHQVVVDPDLVRHVKQRLALDRMNSWEPR 246 Query 246 RRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTSEEER 305 RG R +RP RPEVIA+LD EGLLPAITF+FSRAGC+AA+ QC+RS LRLT+ E+ Sbjct 247 GRGGYRSNDFRPLPRPEVIARLDEEGLLPAITFIFSRAGCEAALAQCVRSKLRLTTPEQT 306 Query 306 ARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTAGLVK 365 ARI E+ID L DL VLGY+ WRE L RG AAHHAGMLPAF+ TVEELF GLV+ Sbjct 307 ARIREIIDEHTRHLPRPDLEVLGYWSWREALERGFAAHHAGMLPAFKETVEELFVNGLVR 366 Query 366 AVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEGHAVV 425 AVFATETLALGINMPAR+VVLERLVK+NG+ H LTPGEYTQLTGRAGRRGIDVEGHAVV Sbjct 367 AVFATETLALGINMPARSVVLERLVKYNGDTHAELTPGEYTQLTGRAGRRGIDVEGHAVV 426 Query 426 IWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQYQADR 485 +W P +EP++VAGLASTRTFPLRSSF P YNM+INLV RMG ++ LLE+SFAQ+QADR Sbjct 427 LWQPGVEPTDVAGLASTRTFPLRSSFRPGYNMSINLVDRMGAVESRALLERSFAQFQADR 486 Query 486 SVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRRQAAT 545 SVVGL R IER L ++ +LG +D EY R+R ++ ER R R RR A+ Sbjct 487 SVVGLTRSIERNEAALTDLRDKLGCADGGYFEYFRIREQLRSRERMLERQGRADRRGASV 546 Query 546 DALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYS-GTTP 604 +L LRRGD++ I G+R GLAVVLE ++ +DPRPLVLTE +WAGR+S+AD+ Sbjct 547 SSLVDLRRGDVVAIPVGKRSGLAVVLEPDQNPNDPRPLVLTEDKWAGRVSAADFPVPARS 606 Query 605 VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSREQLRR 664 +G + LP+ V+HR RVRRDLASALRS ++P R G D E + R+ LR Sbjct 607 LGKLRLPRHVDHRTARVRRDLASALRSTG---IVPPRRPKRGKAGREDSEAVALRKALRD 663 Query 665 HPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFID-G 723 HP H+ P E R ERY R+ R+ L +K AA TNSLARTFDR V LLTER FI G Sbjct 664 HPCHSRPDREQLSRIGERYNRLARETESLRQKSAATTNSLARTFDRIVALLTERGFISAG 723 Query 724 PATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQG 783 P DP T++G+ LARIYSESDLLVAECLR GAW+GL PAELAGVVS+VVYE+R Q Sbjct 724 P--DPKATEEGQRLARIYSESDLLVAECLRRGAWKGLTPAELAGVVSSVVYESR----QD 777 Query 784 APFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGDLAA 843 A PT LRQAL +T R+ +L+ADE H++ +REPD GFV IY+W+ L Sbjct 778 ADAPDRGPTAPLRQALAETMRVWGSLQADEIRHKLPVTREPDSGFVTAIYQWANDEPLVD 837 Query 844 ALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDIRRGVVAV 903 L AA G L AGDFVRWCRQV+DLLDQV AP+P + A RAIG IRRGVVA+ Sbjct 838 VLVAA--GSGGKELAAGDFVRWCRQVIDLLDQVHATAPDPAVAKAAARAIGSIRRGVVAI 895 Query 904 DAG 906 A Sbjct 896 SAA 898 >gi|226359987|ref|YP_002777765.1| helicase [Rhodococcus opacus B4] gi|226238472|dbj|BAH48820.1| putative helicase [Rhodococcus opacus B4] Length=911 Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/912 (63%), Positives = 675/912 (75%), Gaps = 24/912 (2%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 ELD F+A+L F LD FQ AC ALE GHGVLVCAPTGAGKTVVGEFAVHLALAAG KCFY Sbjct 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCFY 70 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK+ +L RYG+D +GLLTGD S+N +APVVVMTTEVLRNMLYADS AL+G Sbjct 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLYADSAALRG 130 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LS+VVMDEVHFLADR RG VWEEVIL L +DVR+VSLSATVSNAEEFG W++TVRGDTTV Sbjct 131 LSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTTV 190 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRI--GEAEGQPQVNRELLRHIAHRREADRMADWQ 243 VVDE+RP+PLWQH++VG+R+FDLFD R G+A V+++L+RH+ R+ +R W+ Sbjct 191 VVDENRPIPLWQHIMVGRRLFDLFDTRARSGDARNDLVVDQDLVRHVKQRQALERADSWE 250 Query 244 PRRRGSGR-----PGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 PR RG +RP RPEVI++LD EGLLPAITF+FSRAGCDAA+ QCLRS L Sbjct 251 PRGRGRRGGGRGYSSDFRPLPRPEVISRLDDEGLLPAITFIFSRAGCDAALAQCLRSRLD 310 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 LT+ E+ A I ++D G+L +DL VLGY+EWR+ L RGLAAHHAGMLPAFR TVEEL Sbjct 311 LTTPEQVAEIRTIVDAHTGELPKADLEVLGYWEWRKALERGLAAHHAGMLPAFRQTVEEL 370 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 F GLV+AVFATETLALGINMPARTVVLERLVK+NGE H LTPGEYTQLTGRAGRRGID Sbjct 371 FVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHAELTPGEYTQLTGRAGRRGID 430 Query 419 VEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSF 478 +EGHAVV+W P +EP +VAGLASTRTFPLRSSF P YNMTINLV RMG ++ LLE+SF Sbjct 431 IEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMTINLVDRMGAAESRALLERSF 490 Query 479 AQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRL 538 AQ+QADRSVVGL RGIER L + LGG D EYARLR +S ER+ RA R Sbjct 491 AQFQADRSVVGLTRGIERNEAALTTLRERLGGEDGEYFEYARLREELSSRERSLERAGRT 550 Query 539 QRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSAD 598 +RR AA +L ALRRGD+I I GR GLAVVLE RD DP+PL+LTE +WAGR+S+ D Sbjct 551 ERRDAAVASLVALRRGDVIAIPVGRHSGLAVVLEPDRDPTDPKPLILTEAKWAGRVSAGD 610 Query 599 Y-SGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAG-GFHDPELE 656 + +GSM LP+R +H RVRRDLASALRS G+V P R+ ++G D E+ Sbjct 611 FPEPARSLGSMRLPRRFDHHTARVRRDLASALRS--TGIVAPGRRKRKKSGAAADDAEIA 668 Query 657 SSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLT 716 R +R+HP H+ P E R ERY R+ R+ + +KVAA TNSLARTFDR + LL Sbjct 669 RLRRAIRQHPCHSWPDREQLSRIGERYNRLARETETMRQKVAATTNSLARTFDRILSLLA 728 Query 717 EREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYET 776 ER+++ P T+ G L+RIY ESDLLVAECLR G W+GL PAELA V SAV++E+ Sbjct 729 ERDYVSA-GEHPDATEHGTRLSRIYCESDLLVAECLRQGVWKGLGPAELAAVASAVIFES 787 Query 777 -RGGDG--QGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIY 833 R GD G P GA LR AL +T R+ LRADE H++ P+REPD GF IY Sbjct 788 RREGDTVESGGP-GA------LRHALDETVRVWRELRADEIRHKLPPTREPDFGFAAAIY 840 Query 834 RWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAI 893 W+ L AL AA G L AGDFVRWCRQV+DLL+QVR+ +P+PE+ A RA+ Sbjct 841 HWASDNSLVEALIAA--GDQGRALSAGDFVRWCRQVIDLLEQVRSTSPDPEVGKAAGRAV 898 Query 894 GDIRRGVVAVDA 905 IRRGVVAVDA Sbjct 899 AAIRRGVVAVDA 910 >gi|111017854|ref|YP_700826.1| ATP-dependent helicase [Rhodococcus jostii RHA1] gi|110817384|gb|ABG92668.1| probable ATP-dependent helicase [Rhodococcus jostii RHA1] Length=911 Score = 1080 bits (2794), Expect = 0.0, Method: Compositional matrix adjust. Identities = 569/910 (63%), Positives = 674/910 (75%), Gaps = 18/910 (1%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 ELD F+A+L F LD FQ AC ALE GHGVLVCAPTGAGKTVVGEFAVHLAL +G KCFY Sbjct 11 ELDVFSAQLGFVLDPFQINACRALEGGHGVLVCAPTGAGKTVVGEFAVHLALTSGRKCFY 70 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK+ +L RYG+D +GLLTGD S+N +APVVVMTTEVLRNMLYADSPAL+G Sbjct 71 TTPIKALSNQKYAELVRRYGKDTVGLLTGDSSINSDAPVVVMTTEVLRNMLYADSPALRG 130 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 LS+VVMDEVHFLADR RG VWEEVIL L +DVR+VSLSATVSNAEEFG W++TVRGDTTV Sbjct 131 LSHVVMDEVHFLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTTV 190 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRI--GEAEGQPQVNRELLRHIAHRREADRMADWQ 243 VVDE+RP+PLWQH++VGKR+FDLFD R G+A V+++L+RH+ R+ +R W+ Sbjct 191 VVDENRPIPLWQHIMVGKRLFDLFDTRARSGDALQDLVVDQDLVRHVKQRQALERADSWE 250 Query 244 PRRRGSGR-----PGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 R RG +RP RPEVI++LD EGLLPAITF+FSRAGCDAA+ QCLRS L Sbjct 251 SRGRGRRGGGRGFSSDFRPLPRPEVISRLDDEGLLPAITFIFSRAGCDAALAQCLRSRLD 310 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 LT+ E+ A I +ID +L +DL VLGY+EWR+ L RGLAAHHAGMLPAFR TVEEL Sbjct 311 LTTPEQVAEIRTIIDAHTAELPKADLEVLGYWEWRKALERGLAAHHAGMLPAFRQTVEEL 370 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 F GLV+AVFATETLALGINMPARTVVLERLVK+NGE H LTPGEYTQLTGRAGRRGID Sbjct 371 FVKGLVRAVFATETLALGINMPARTVVLERLVKYNGEAHAELTPGEYTQLTGRAGRRGID 430 Query 419 VEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSF 478 +EGHAVV+W P +EP +VAGLASTRTFPLRSSF P YNMTINLV RMG ++ LLE+SF Sbjct 431 IEGHAVVLWQPGVEPVDVAGLASTRTFPLRSSFRPGYNMTINLVDRMGAAESRALLERSF 490 Query 479 AQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRL 538 AQ+QADRSVVGL RGIER L + LGG D EYARLR +S ER+ RA R Sbjct 491 AQFQADRSVVGLTRGIERNEAALTTLRERLGGEDGEYFEYARLREELSSRERSLERAGRT 550 Query 539 QRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSAD 598 +RR AA +L ALRRGD+I I GR GLAVVLE RD DP+PL+LTE +WAGR+S+ D Sbjct 551 ERRDAAVASLVALRRGDVIAIPVGRHSGLAVVLEPDRDPTDPKPLILTEAKWAGRVSAGD 610 Query 599 Y-SGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAG-GFHDPELE 656 + +GSM LP+R +H RVRRDLASALRS G+V P R+ +++G D E+ Sbjct 611 FPEPARSLGSMRLPRRFDHHTARVRRDLASALRS--TGIVAPGRRKRTKSGAATDDAEIA 668 Query 657 SSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLT 716 R +R+HP H+ P E R ERY R+ R+ + +KVAA TNSLARTFDR + LL Sbjct 669 RLRRAIRQHPCHSWPDREQLSRIGERYNRLARETETMRQKVAATTNSLARTFDRILSLLA 728 Query 717 EREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYET 776 ER++I P P T+ G L+RIY ESDLLVAECLR G W+GL PAELA VVSAV++E+ Sbjct 729 ERDYI-SPGEHPDATEHGTRLSRIYCESDLLVAECLRQGVWKGLGPAELAAVVSAVIFES 787 Query 777 RGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWS 836 R +G A P LR AL +T R+ LRADE H++ P+REPD GF I+ W+ Sbjct 788 R---REGDTVEAGGPGA-LRHALDETVRVWRELRADEIRHKLPPTREPDLGFAAAIFHWA 843 Query 837 RTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGDI 896 L AL AA G L AGDFVRWCRQV+DLL+QVR+ +P+P++ A RA+ I Sbjct 844 SDNSLVEALIAA--GDQGRALSAGDFVRWCRQVIDLLEQVRSTSPDPQVGKAAGRAVAAI 901 Query 897 RRGVVAVDAG 906 RRGVVAVDA Sbjct 902 RRGVVAVDAA 911 >gi|226306653|ref|YP_002766613.1| helicase [Rhodococcus erythropolis PR4] gi|226185770|dbj|BAH33874.1| putative helicase [Rhodococcus erythropolis PR4] Length=905 Score = 1073 bits (2776), Expect = 0.0, Method: Compositional matrix adjust. Identities = 573/915 (63%), Positives = 671/915 (74%), Gaps = 20/915 (2%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 V +EL F + L F LD FQ +AC ALE GHGVLVCAPTGAGKTVVGEFAVHLALAAG Sbjct 2 VMNKSELSTFASSLKFELDPFQVKACVALEAGHGVLVCAPTGAGKTVVGEFAVHLALAAG 61 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTP+KALSNQK+ +L RYG ++GLLTGD S+N +APVVVMTTEVLRNMLYA+S Sbjct 62 RKCFYTTPIKALSNQKYAELVERYGPSEVGLLTGDSSINSDAPVVVMTTEVLRNMLYANS 121 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 AL+GLS+VVMDEVH+LADR RG VWEEVIL L +DVR+VSLSATVSNAEEFG W++TVR Sbjct 122 EALRGLSHVVMDEVHYLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGSWMETVR 181 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQV--NRELLRHIAHRREADR 238 GDTTVVVDE RP+PLWQH++VG+R+FDLFD R A G V +++L+RH+ R+ +R Sbjct 182 GDTTVVVDETRPIPLWQHIMVGRRIFDLFDSRSHPAAGPKTVLVDQDLVRHVKQRQALER 241 Query 239 MADWQPRRRGSGRPGFY------RPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQC 292 + WQPR G GR G Y RP RP+VIA+LD GLLPAITF+FSRAGCDAA+ QC Sbjct 242 VESWQPR--GRGRRGSYQSSNDFRPLPRPDVIAQLDQSGLLPAITFIFSRAGCDAALAQC 299 Query 293 LRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFR 352 LRS L LTS E+ I +I+ G+L + DL VLGY +W + L RGLA+HHAGMLPAFR Sbjct 300 LRSRLDLTSPEQVREIDTIIEKHTGELPEEDLEVLGYRDWCKALRRGLASHHAGMLPAFR 359 Query 353 HTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRA 412 TVEELF GLV+AVFATETLALGINMPARTVVLERLVK+NGE H LTPGEYTQLTGRA Sbjct 360 QTVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGESHAELTPGEYTQLTGRA 419 Query 413 GRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHR 472 GRRGIDVEGHAVV+W P +EP++VAGLASTRTFPLRSSF PSYNM+INLV RMG + + Sbjct 420 GRRGIDVEGHAVVLWQPGVEPTDVAGLASTRTFPLRSSFRPSYNMSINLVERMGAADSRK 479 Query 473 LLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQ 532 LLE+SFAQ+QADRSVVGLVRGIER L + +LGG+D EYA LR R+S ERA Sbjct 480 LLERSFAQFQADRSVVGLVRGIERNEEALKGLQEKLGGADGEYFEYASLRERLSARERAL 539 Query 533 ARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAG 592 R R RR A ++L AL RGD+I I GR G+AVVL D DPRPLVLT +WAG Sbjct 540 ERKGREDRRGDAVESLRALARGDVIAIPIGRHSGVAVVLVPDNDPKDPRPLVLTADQWAG 599 Query 593 RISSADYSGTTPV-GSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFH 651 R+SS D+ V G M LPK V+H R+RRDLASALRS G+ P ++ +AG Sbjct 600 RLSSGDFPEAADVLGKMRLPKHVDHHTARIRRDLASALRS--TGISAPRRKKRHKAGASE 657 Query 652 DPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRF 711 D E+ + R +R HP H+ P E R ERY R+ R+ + K AA TNSLARTFDR Sbjct 658 DAEVATLRRAIRSHPCHSWPDREHLSRIGERYNRLARETQSMREKAAATTNSLARTFDRI 717 Query 712 VGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSA 771 + LL ERE++ A P VT+ GR L+RIYSESDLLVAECLRTGAW GL PAELA VVS+ Sbjct 718 IALLKEREYMTAEAA-PEVTESGRRLSRIYSESDLLVAECLRTGAWTGLSPAELAAVVSS 776 Query 772 VVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRV 831 VVYE+R DG VPT LR AL T RL + LR+DE H++ P+REPD GFV Sbjct 777 VVYESR-RDGDTVD---RVPTAALRHALNDTQRLWSELRSDEIRHKLPPTREPDLGFVTA 832 Query 832 IYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKR 891 +Y W+ L AL AA V G L AGDFVRWCRQV+DLLDQVR + + ++ TA R Sbjct 833 VYHWASENSLVDALIAAGVQGRA--LSAGDFVRWCRQVIDLLDQVRLTSTDADVAKTAAR 890 Query 892 AIGDIRRGVVAVDAG 906 A+ IRRGVVAVDA Sbjct 891 AVAAIRRGVVAVDAA 905 >gi|229493571|ref|ZP_04387356.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319532|gb|EEN85368.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=903 Score = 1072 bits (2773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/911 (63%), Positives = 670/911 (74%), Gaps = 20/911 (2%) Query 5 AELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCF 64 +EL F + L F LD FQ +AC ALE GHGVLVCAPTGAGKTVVGEFAVHLALAAG KCF Sbjct 4 SELSTFASSLKFELDPFQVKACVALEAGHGVLVCAPTGAGKTVVGEFAVHLALAAGRKCF 63 Query 65 YTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQ 124 YTTP+KALSNQK+ +L RYG ++GLLTGD S+N +APVVVMTTEVLRNMLYA+S AL+ Sbjct 64 YTTPIKALSNQKYAELVERYGPGEVGLLTGDSSINSDAPVVVMTTEVLRNMLYANSEALR 123 Query 125 GLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTT 184 GLS+VVMDEVH+LADR RG VWEEVIL L +DVR+VSLSATVSNAEEFG W++TVRGDTT Sbjct 124 GLSHVVMDEVHYLADRFRGAVWEEVILHLSEDVRLVSLSATVSNAEEFGAWMETVRGDTT 183 Query 185 VVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQV--NRELLRHIAHRREADRMADW 242 VVVDE RP+PLWQH++VG+R+FDLFD R A G V +++L+RH+ R+ +R+ W Sbjct 184 VVVDETRPIPLWQHIMVGRRIFDLFDSRSHPAAGPKTVLVDQDLVRHVKQRQALERVESW 243 Query 243 QPRRRGSGRPGFY------RPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSP 296 QPR G GR G Y RP RP+VIA+LD GLLPAITF+FSRAGCDAA+ QCLRS Sbjct 244 QPR--GRGRRGSYQSSNDFRPLPRPDVIAQLDQSGLLPAITFIFSRAGCDAALAQCLRSR 301 Query 297 LRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVE 356 L LTS E+ I +I+ G+L + DL VLGY +W + L RGLA+HHAGMLPAFR TVE Sbjct 302 LDLTSPEQVREIDTIIEKHTGELPEEDLEVLGYRDWCKALRRGLASHHAGMLPAFRQTVE 361 Query 357 ELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRG 416 ELF GLV+AVFATETLALGINMPARTVVLERLVK+NGE H LTPGEYTQLTGRAGRRG Sbjct 362 ELFVKGLVRAVFATETLALGINMPARTVVLERLVKYNGESHAELTPGEYTQLTGRAGRRG 421 Query 417 IDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQ 476 IDVEGHAVV+W P +EP++VAGLASTRTFPLRSSF PSYNM+INLV RMG + +LLE+ Sbjct 422 IDVEGHAVVLWQPGVEPTDVAGLASTRTFPLRSSFRPSYNMSINLVERMGAADSRKLLER 481 Query 477 SFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARAS 536 SFAQ+QADRSVVGLVRGIER L + +LGG+D EYA LR R+S ERA R Sbjct 482 SFAQFQADRSVVGLVRGIERNEEALKGLQEKLGGADGEYFEYASLRERLSARERALERKG 541 Query 537 RLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISS 596 R RR A ++L AL RGD+I I GR G+AVVL D DPRPLVLT +WAGR+SS Sbjct 542 REDRRGDAVESLRALARGDVIAIPIGRHSGVAVVLVPDNDPKDPRPLVLTADQWAGRLSS 601 Query 597 ADYSGTTPV-GSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPEL 655 D+ V G M LPK V+H R+RRDLASALRS G+ P ++ +AG D E+ Sbjct 602 GDFPEAADVLGKMRLPKHVDHHTARIRRDLASALRS--TGISAPRRKKRHKAGASEDAEV 659 Query 656 ESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLL 715 + R +R HP H+ P E R ERY R+ R+ + K AA TNSLARTFDR + LL Sbjct 660 ATLRRAIRSHPCHSWPDREHLSRIGERYNRLARETQSMREKAAATTNSLARTFDRIIALL 719 Query 716 TEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE 775 ERE++ A P VT+ GR L+RIYSESDLLVAECLRTGAW GL PAELA VVS+VVYE Sbjct 720 KEREYMTAEAA-PEVTESGRRLSRIYSESDLLVAECLRTGAWTGLSPAELAAVVSSVVYE 778 Query 776 TRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRW 835 +R DG VPT LR AL T RL + LR+DE H++ P+REPD GFV +Y W Sbjct 779 SR-RDGDTVD---RVPTAALRHALNDTQRLWSELRSDEIRHKLPPTREPDLGFVTAVYHW 834 Query 836 SRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRAIGD 895 + L AL AA V G L AGDFVRWCRQV+DLLDQVR + + ++ TA RA+ Sbjct 835 ASENSLVDALIAAGVQGRA--LSAGDFVRWCRQVIDLLDQVRLTSTDADVAKTAARAVAA 892 Query 896 IRRGVVAVDAG 906 IRRGVVAVDA Sbjct 893 IRRGVVAVDAA 903 >gi|257056196|ref|YP_003134028.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017] gi|256586068|gb|ACU97201.1| superfamily II RNA helicase [Saccharomonospora viridis DSM 43017] Length=918 Score = 995 bits (2573), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/907 (60%), Positives = 646/907 (72%), Gaps = 27/907 (2%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L RF AE+ F DDFQ R C ALE GHGVLVCAPTGAGKT+VGEFAVHLALA G KCFY Sbjct 25 QLTRFAAEVSFEFDDFQVRGCEALEDGHGVLVCAPTGAGKTIVGEFAVHLALAEGRKCFY 84 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK+ DL RYG D +GLLTGD S+NG A +VVMTTEVLRNMLYA+S L Sbjct 85 TTPIKALSNQKYGDLVERYGSDIVGLLTGDTSINGGAQIVVMTTEVLRNMLYAESTTLDD 144 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 L YVV+DEVH+LADR RG VWEEVIL LPD VRVV LSATVSNAEEFG W+ VRGDTTV Sbjct 145 LGYVVLDEVHYLADRFRGAVWEEVILHLPDYVRVVGLSATVSNAEEFGEWLVEVRGDTTV 204 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGE--AEGQPQVNRELLRHIAHRREADRM---A 240 VVDEHRPVPLWQH+LVG R++DLF +GE G+ ++N LLR + EA RM A Sbjct 205 VVDEHRPVPLWQHMLVGGRLYDLF---VGERADTGEAKLNPRLLRAV---EEAGRMHVPA 258 Query 241 DWQPR-RRGSGRPG-FYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 + R RRG+ + G YRPP R E++ +LD GLLPAI F+FSRAGCDAAVTQC+RS LR Sbjct 259 GLRGRSRRGAPQRGPRYRPPSRTEIVDRLDRAGLLPAIVFIFSRAGCDAAVTQCVRSGLR 318 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 L + +E ++ ++D R DL SDL VLGY+EWREGL +G+AAHHAG+LPAF+ TVEEL Sbjct 319 LNTPDEVQQVRRIVDERTADLPPSDLEVLGYWEWREGLEQGIAAHHAGLLPAFKETVEEL 378 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 F GLVK VFATETLALGINMPARTVVLERLVK+NGE H+ LTPGEYTQLTGRAGRRGID Sbjct 379 FVRGLVKVVFATETLALGINMPARTVVLERLVKYNGESHVDLTPGEYTQLTGRAGRRGID 438 Query 419 VEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSF 478 VEGHAVV+W P ++P +VAGLASTRT+PLRSSF P YNM +NLV R G +A LLEQSF Sbjct 439 VEGHAVVVWQPGVDPRQVAGLASTRTYPLRSSFRPGYNMAVNLVGRFGAVKARELLEQSF 498 Query 479 AQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRL 538 AQ+QADRSVVGL R IER L A + G +L Y LR ++SE E+A AR + Sbjct 499 AQFQADRSVVGLSRRIERNTEALRGYADAVTGDFDEMLSYLTLRKKISEREKALARQNTA 558 Query 539 QRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDR-DDPRPLVLTEHRWAGRISSA 597 RR +L LR+GD+I + GRR GLAVV++S D+ D+PRPLV+TE RWAG +S + Sbjct 559 ARRAQTAKSLEKLRKGDVIAVPSGRRAGLAVVIDSGVDQFDEPRPLVVTEDRWAGTLSLS 618 Query 598 DY-SGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELE 656 D+ + P+G + LPK VE R P+ RRD+AS+LR+ + P R+ + DPEL Sbjct 619 DFPTPVEPLGRLRLPKHVELRSPKTRRDIASSLRNTG---IRPPKRQRWRSDAHSDPELA 675 Query 657 SSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLT 716 R QLR HPVH E +R ERY R+ DN +L+RKVAA T+SLAR FDR LL Sbjct 676 ELRRQLRAHPVHGMADREANLRWVERYQRLAEDNQRLKRKVAATTHSLARAFDRIRRLLI 735 Query 717 EREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYET 776 ER ++ D VT+ G+LLAR+YSESDLL AEC+R W GL PAELA VVS +VYE Sbjct 736 ERGYLGESGDD--VTEHGQLLARLYSESDLLAAECIRQRVWHGLAPAELAAVVSTLVYEA 793 Query 777 RGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWS 836 R + + A VP + +A +T RL + L DE+ HR+ P+REPD GF +YRW+ Sbjct 794 R----RDSTAEAKVPAGPVNKAWQETVRLWSDLVEDERRHRLDPTREPDAGFAWPVYRWA 849 Query 837 RTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNA-APNPELRATAKRAIGD 895 R L L +A+VN G L AGDFVRW RQV+DLL+Q+R+ + A +A Sbjct 850 RGESLEKVLTSAEVN--GQELSAGDFVRWSRQVVDLLEQIRDVLGKEHPVGGAAGKASRL 907 Query 896 IRRGVVA 902 +RRGVVA Sbjct 908 LRRGVVA 914 >gi|296139877|ref|YP_003647120.1| DEAD/DEAH box helicase [Tsukamurella paurometabola DSM 20162] gi|296028011|gb|ADG78781.1| DEAD/DEAH box helicase domain protein [Tsukamurella paurometabola DSM 20162] Length=917 Score = 993 bits (2567), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/919 (60%), Positives = 653/919 (72%), Gaps = 30/919 (3%) Query 5 AELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCF 64 +EL+ F L F+LD FQ+ C+ALE GHGVLVCAPTGAGKTVVGEFAVHLALA G+KCF Sbjct 4 SELELFAERLDFTLDPFQRDGCAALENGHGVLVCAPTGAGKTVVGEFAVHLALAGGTKCF 63 Query 65 YTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQ 124 YTTP+KALSNQKH +L ARYG D++GLLTGD S+N +APVVVMTTEVLRNMLYADSP L Sbjct 64 YTTPIKALSNQKHAELVARYGADKVGLLTGDTSINSHAPVVVMTTEVLRNMLYADSPTLD 123 Query 125 GLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTT 184 GLS+VVMDEVH+LADR RG VWEEVIL LP DVR+VSLSATVSNAEEFG WI VRGDTT Sbjct 124 GLSHVVMDEVHYLADRFRGAVWEEVILHLPADVRLVSLSATVSNAEEFGAWITEVRGDTT 183 Query 185 VVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ------VNRELLRHIAHRREADR 238 V+VDE RPVPLWQH+LVG+R+FDLFD R A + ++ L+R++ R DR Sbjct 184 VIVDEKRPVPLWQHMLVGRRLFDLFDTRALRASQESGGKNALVLDAALVRYVKQRESLDR 243 Query 239 MAD---WQP--RRRGSGRP-GFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQC 292 D P RR G GRP RP RPEVIA LDAEGLLPAITFVFSRAGC+ A+TQC Sbjct 244 SRDPGIVSPTGRRAGRGRPQATRRPIPRPEVIALLDAEGLLPAITFVFSRAGCEQALTQC 303 Query 293 LRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFR 352 LRSP+ LT++++ A I +ID + + +DL +LG+ EWR L RG AAHHAGMLPAFR Sbjct 304 LRSPVVLTTQDQAAEIGAIIDKHVAEFSPADLELLGFEEWRAALTRGFAAHHAGMLPAFR 363 Query 353 HTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRA 412 H VEELF GLV+AVFATETLALGINMPARTVVLERLVKFNGE H LTPGEYTQLTGRA Sbjct 364 HAVEELFVKGLVRAVFATETLALGINMPARTVVLERLVKFNGETHNELTPGEYTQLTGRA 423 Query 413 GRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHR 472 GRRGIDVEGHAVV+W + P EVAGLA RTFPL SSF P YNM+INLV R+G A R Sbjct 424 GRRGIDVEGHAVVLWQTGVRPQEVAGLAGARTFPLVSSFTPGYNMSINLVDRLGRAGAER 483 Query 473 LLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAEL----GGSDAPILEYARLRARVSEL 528 LLE SFAQ+QADRSVVGL + ++RG + L ++ A++ GG+D LEY RLR V Sbjct 484 LLEASFAQFQADRSVVGLAKRVQRGEKELDQLRAQITDAAGGAD--YLEYVRLREAVRSR 541 Query 529 ERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEH 588 ER+ R RR A AL LRRGD++ +T G+R GLA+V+E + DR DP+P+V+TE Sbjct 542 ERSLRRQHLSDRRDGAATALGELRRGDVVAVTGGKRRGLALVVEPSGDRRDPKPVVVTES 601 Query 589 RWAGRISSADYSGTTPV-GSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEA 647 W+GR+ ++D+ G PV G++ +PK ++R R +RDLAS LR++ I A R+ ++A Sbjct 602 GWSGRVGASDFVGDLPVLGTLRVPKNADYRSGRGKRDLASTLRNSG----ISAPRQQAKA 657 Query 648 G--GFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLA 705 D EL R Q+R HP HT + R AERY R+ER+ V A T+SLA Sbjct 658 ARPAATDGELADLRAQMRAHPAHTGQRAAELDRLAERYARLERETTAAAATVRATTSSLA 717 Query 706 RTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAEL 765 TF+R V LL +R +++ D V+T+ G LAR+YSESDLLV EC+ G ++GL PAEL Sbjct 718 VTFERIVALLDDRGYLETVDGDVVLTEAGHRLARVYSESDLLVCECIEDGVFDGLAPAEL 777 Query 766 AGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPD 825 A VVSA+V+E+RG G G VP +R A+ + T + A E AHR+ PSREPD Sbjct 778 AAVVSAMVFESRGDRGGAILTGERVPGG-VRSAVRDIADRWTDIVAAEAAHRLEPSREPD 836 Query 826 DGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAA--PNP 883 GFV +Y+W+ G LAA L AA G PL AGDFVRWCRQV+DLLDQ+R + P Sbjct 837 VGFVAPMYQWAGGGTLAATLIAA--GERGQPLPAGDFVRWCRQVIDLLDQIRQTSLQTRP 894 Query 884 ELRATAKRAIGDIRRGVVA 902 L A A AI IRRGVVA Sbjct 895 GLAAVATAAIAGIRRGVVA 913 >gi|333919686|ref|YP_004493267.1| putative helicase [Amycolicicoccus subflavus DQS3-9A1] gi|333481907|gb|AEF40467.1| Putative helicase [Amycolicicoccus subflavus DQS3-9A1] Length=911 Score = 992 bits (2565), Expect = 0.0, Method: Compositional matrix adjust. Identities = 535/913 (59%), Positives = 644/913 (71%), Gaps = 34/913 (3%) Query 10 FTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPL 69 F A LPF +D FQ RAC ALE GHGVLVCAPTGAGKTVVGEFAVHLAL++G KCFYTTP+ Sbjct 14 FAAMLPFPMDPFQVRACDALEGGHGVLVCAPTGAGKTVVGEFAVHLALSSGRKCFYTTPI 73 Query 70 KALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYV 129 KALSNQK+ DL ARY RD +GLLTGD S+N APVVVMTTEVLRNMLYA S L+GLS+V Sbjct 74 KALSNQKYNDLVARYDRDTVGLLTGDQSINSEAPVVVMTTEVLRNMLYAGSDTLRGLSHV 133 Query 130 VMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 189 VMDEVHFLADR RG VWEEVIL L DDV +VSLSATVSNAEEFG W++TVRGDTTV+VDE Sbjct 134 VMDEVHFLADRFRGAVWEEVILHLADDVALVSLSATVSNAEEFGAWMETVRGDTTVIVDE 193 Query 190 HRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHI-----------AHRREADR 238 RPVPLWQH+LVG R+ DLF R +G +N +LL H+ H R+++R Sbjct 194 TRPVPLWQHMLVGPRLLDLFPSR-STGKGSRALNPDLLAHVRKRLAAAGAERGHYRQSNR 252 Query 239 MADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLR 298 + R RG G YRPPGR E+IA+LD EGLLPAITFVFSRAGCDAAV QC+R+ L Sbjct 253 D---RGRFRG-GNGARYRPPGRAEIIARLDGEGLLPAITFVFSRAGCDAAVGQCVRAGLA 308 Query 299 LTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEEL 358 LT+E E I +I G+L +DL VLG+ W L RG+AAHHAGMLPAFRHTVEEL Sbjct 309 LTTEAEAKEIRAIITKHTGELPPADLQVLGFSGWCTALERGIAAHHAGMLPAFRHTVEEL 368 Query 359 FTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGID 418 F GLV+AVFATETLALGINMPARTVVLE LVKFNG+ H LTPGEYTQLTGRAGRRGID Sbjct 369 FVKGLVRAVFATETLALGINMPARTVVLESLVKFNGDTHADLTPGEYTQLTGRAGRRGID 428 Query 419 VEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSF 478 +EGHAVV+W P ++P VAGLASTRTFPLRSSFAP YNM INL+ + + A LLE+SF Sbjct 429 IEGHAVVLWQPGVDPEMVAGLASTRTFPLRSSFAPGYNMAINLLRQRPAEDARALLERSF 488 Query 479 AQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRL 538 AQ+Q DRSVVG R +ER R L + + EYARLR +S+ E+ R++ Sbjct 489 AQFQTDRSVVGAARTVERNERELERLEGRVDCHLGDFAEYARLRRGISQREKDLERSATA 548 Query 539 QRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSAD 598 +RR AA +L LRRGD+I I GRR G+A V+E R+ DDPRPLV+T+ WAGR++ D Sbjct 549 ERRDAAASSLVKLRRGDVIVIPSGRRAGVAAVVEPDREFDDPRPLVITDSAWAGRVTLRD 608 Query 599 YS-GTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIP---AARRVSEAGGFHDPE 654 + +G++ LP+ ++ R +VRRDLAS LR+ G P R+ +A +D E Sbjct 609 FPIPVQTLGAVRLPRHIDFRSAQVRRDLASTLRN--LGYTPPHRAPGRKGQKAAAANDKE 666 Query 655 LESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGL 714 L R L+ HP HT E+ R ERY R++ D +L R++ A++SLARTFDR V L Sbjct 667 LARMRRTLKAHPCHTCEEREEHARWFERYDRLKADTDRLRRQMNLASSSLARTFDRIVTL 726 Query 715 LTEREFID--GPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAV 772 LTER ++ D VT++G L+RIYSESDLLVAE LR G W+GL PAELA VSAV Sbjct 727 LTERGYVSEASDTADSTVTEEGEWLSRIYSESDLLVAEALRRGIWKGLGPAELAATVSAV 786 Query 773 VYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVI 832 V+ETR +G G VPT LR++L T R+ + +DE H++ REPD GFV Sbjct 787 VFETR---REGVTAG-HVPTAPLRRSLADTMRIWEEIHSDELRHKLPTMREPDAGFVHAA 842 Query 833 YRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPELRATAKRA 892 Y W+ L AL AA+ + AGDFVRWCRQ++DLLDQ+R AAP+ E+R+TA +A Sbjct 843 YLWATEAPLVEALLAAN------EISAGDFVRWCRQLIDLLDQIRIAAPDREVRSTAGKA 896 Query 893 IGDIRRGVVAVDA 905 I +RRGVVAVDA Sbjct 897 IAAVRRGVVAVDA 909 >gi|134098834|ref|YP_001104495.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|291005808|ref|ZP_06563781.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] gi|133911457|emb|CAM01570.1| putative ATP-dependent RNA helicase [Saccharopolyspora erythraea NRRL 2338] Length=925 Score = 973 bits (2515), Expect = 0.0, Method: Compositional matrix adjust. Identities = 534/908 (59%), Positives = 636/908 (71%), Gaps = 25/908 (2%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L F EL F LD FQ+ AC ALE GHGVLVCAPTGAGKTVVGEFAVHLAL+ G KCFY Sbjct 28 KLADFAGELSFELDPFQRTACQALESGHGVLVCAPTGAGKTVVGEFAVHLALSEGRKCFY 87 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK+ DL RYG D +GLLTGD S+NGNA VVVMTTEVLRNMLYA S + Sbjct 88 TTPIKALSNQKYADLCERYGEDAVGLLTGDTSINGNAQVVVMTTEVLRNMLYAGSSTVDQ 147 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 L YVVMDEVH+LADR RG VWEEVIL LP+ V++ SLSATVSNAEEFG W+ VRGDTTV Sbjct 148 LGYVVMDEVHYLADRFRGAVWEEVILHLPEYVQLASLSATVSNAEEFGEWLVEVRGDTTV 207 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREAD----RMAD 241 VVDEHRPVPLWQH+LVG RMFDLF + E ++N LLRH R Sbjct 208 VVDEHRPVPLWQHMLVGSRMFDLFGGETTDRE--LKINPNLLRHTQELSRVHTPYGRRGG 265 Query 242 WQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTS 301 +RRG P FY P R E++ LDA GLLPAI F+FSRAGCDAAV+QC+R+ +RLTS Sbjct 266 PNGKRRGPRPPRFY-APSRVEILNGLDAAGLLPAIVFIFSRAGCDAAVSQCVRAGMRLTS 324 Query 302 EEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTA 361 E+E I VID +L +SDL VLGY+EWRE L RGLAAHHAG+LPAF+ TVEELF Sbjct 325 EDEVDEIRRVIDEHTSNLPESDLTVLGYWEWREALERGLAAHHAGLLPAFKETVEELFVR 384 Query 362 GLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEG 421 GLVKAVFATETLALGINMPARTVVLERLVKFNGE H+ L+PGEYTQLTGRAGRRGIDVEG Sbjct 385 GLVKAVFATETLALGINMPARTVVLERLVKFNGESHVDLSPGEYTQLTGRAGRRGIDVEG 444 Query 422 HAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQY 481 HAVV+W P I+P VAGLASTRT+PLRSSF P YNM +NLV R+G + A LLEQSFAQ+ Sbjct 445 HAVVVWQPGIDPKGVAGLASTRTYPLRSSFRPGYNMAVNLVQRVGRESARELLEQSFAQF 504 Query 482 QADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRR 541 QADRSVVG+ R ++R L A + EY LR R+S+ E+A AR +R RR Sbjct 505 QADRSVVGMSRRVDRNADALDGYAESMRCHLGDFEEYFGLRKRISDREKALARQNRASRR 564 Query 542 QAATDALAALRRGDIITITHGRRGGLAVVLESARD-RDDPRPLVLTEHRWAGRISSADYS 600 A +L LR+GD+I + GRR GLAVV++ + +PRPLV+TE RWAGR+S AD+ Sbjct 565 AEAAKSLERLRKGDVIAVPAGRRSGLAVVIDPGLEPMGEPRPLVVTEDRWAGRLSVADF- 623 Query 601 GTTPV---GSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELES 657 T+PV G + LPK V+ R P+ RRDLAS LR+ G+ P R A D EL S Sbjct 624 -TSPVEALGRIKLPKHVDTRSPKSRRDLASTLRN--TGISTPGGRSRRRADAADDAELAS 680 Query 658 SREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTE 717 R L+ HP H E+ R AER+ R+ + QL RKVAA T+SLAR+FDR + LL E Sbjct 681 LRRALKAHPCHGCDERENHARWAERHERLRGETEQLRRKVAATTHSLARSFDRIIALLAE 740 Query 718 REFI--DGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE 775 R+++ D A +P VT+ GR L R+YSESDLL AECLR G WE L P ELA VVS++VYE Sbjct 741 RDYVLLDEDAEEP-VTEHGRRLTRLYSESDLLAAECLRVGVWEKLGPPELAAVVSSLVYE 799 Query 776 TRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRW 835 +R + P VP+ + AL T +L L DE+ H++ +REPD GF ++RW Sbjct 800 SR----REGPMAPAVPSGAVSDALQATWQLWGELEDDERRHKLDRTREPDPGFAWPVFRW 855 Query 836 SRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPE-LRATAKRAIG 894 +R L L AA+ +G L AGDFVRWCRQV+DLLDQ+R+ + + A A +A+ Sbjct 856 ARGESLERVLTAAE--STGHELSAGDFVRWCRQVVDLLDQIRDVVGKSDPVGAAAAKAVT 913 Query 895 DIRRGVVA 902 IRRGVVA Sbjct 914 AIRRGVVA 921 >gi|331697089|ref|YP_004333328.1| DEAD/DEAH box helicase domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326951778|gb|AEA25475.1| DEAD/DEAH box helicase domain protein [Pseudonocardia dioxanivorans CB1190] Length=924 Score = 955 bits (2469), Expect = 0.0, Method: Compositional matrix adjust. Identities = 529/888 (60%), Positives = 627/888 (71%), Gaps = 33/888 (3%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L F A L F LD FQ+ AC ALE GHGVLVCAPTGAGKTVVGEFAVHLALA G KCFYT Sbjct 21 LTEFVAGLSFELDGFQRAACDALEDGHGVLVCAPTGAGKTVVGEFAVHLALAQGLKCFYT 80 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQK+ DL AR+G +GLLTGD SVNG+A VVVMTTEVLRNM+YA S L L Sbjct 81 TPIKALSNQKYADLVARHGESAVGLLTGDTSVNGDAQVVVMTTEVLRNMIYAGSRHLDQL 140 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 YVVMDEVH+LADR RG VWEEVILQLP+ V +VSLSATVSNAEEFG W+ TVRGDTTVV Sbjct 141 GYVVMDEVHYLADRFRGAVWEEVILQLPEHVALVSLSATVSNAEEFGDWLVTVRGDTTVV 200 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIGEAE----GQPQVNRELLRHIAHRREADRMAD- 241 VDEHRPVPLWQH++VG R+ DLF + G A+ + +V+ +L+R RE DR + Sbjct 201 VDEHRPVPLWQHMMVGNRLLDLF-VQSGAADDPTAAELRVDPDLVRQT---RELDRQSST 256 Query 242 --WQPRRRGSG-----RPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLR 294 W RRG R GF RPP R VI +LD +GLLPAITFVFSR GCDAAV QC+R Sbjct 257 AVWDRGRRGRQGSAPRRVGF-RPPSRVTVIDRLDRDGLLPAITFVFSRNGCDAAVGQCVR 315 Query 295 SPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHT 354 S LRLT+++E A I +++ GDL DL VLGY+EWREGL RG+AAHHAG+LPAF+ T Sbjct 316 SGLRLTTDDEVAEIRRIVEKHTGDLPQGDLGVLGYWEWREGLERGIAAHHAGLLPAFKET 375 Query 355 VEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGR 414 VEELF GLV+ VFATETLALGINMPARTVVLERLVK+NGE H+ LTPGEYTQLTGRAGR Sbjct 376 VEELFVRGLVRCVFATETLALGINMPARTVVLERLVKYNGEAHVELTPGEYTQLTGRAGR 435 Query 415 RGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLL 474 RGIDVEGHAVV+W P ++P V GLASTRT+PLRSSF P YNM +NL+ R+G Q++ LL Sbjct 436 RGIDVEGHAVVVWQPGVDPERVGGLASTRTYPLRSSFRPGYNMAVNLLARLGAQRSRELL 495 Query 475 EQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQAR 534 E SF Q+QADRSVVG+ R IER L A+ + EYA LR +VS+ E+A +R Sbjct 496 EMSFGQFQADRSVVGMARRIERNEETLAGYASSMECHLGDFAEYAALRRKVSDREKALSR 555 Query 535 ASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVL-ESARDRDDPRPLVLTEHRWAGR 593 RR AA ++L ALR GD+I + G+R GLAVV+ D D RPLV++E RW+GR Sbjct 556 QGVADRRTAAAESLRALRPGDVIAVPGGKRSGLAVVIDPGVDDDGDVRPLVVSEDRWSGR 615 Query 594 ISSADYSGTTPV---GSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGF 650 +S+AD+ TPV G + LP+ V+HR PR RRDLAS+LR+ G+ P +R G Sbjct 616 LSAADFP--TPVEALGRVKLPRHVDHRSPRGRRDLASSLRN--TGIQAPPPQRRRGRGNA 671 Query 651 H-DPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFD 709 H DPEL + R LR HP H E R ERY R++RD QL +KV A T+SLAR FD Sbjct 672 HDDPELATLRRALRAHPCHGCADREAHARWGERYHRLDRDTEQLRQKVRATTHSLARQFD 731 Query 710 RFVGLLTEREFIDGPAT-DPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGV 768 R LL ER ++ A + VT+ G LAR++ ESDLL AECLR G WE L ELA V Sbjct 732 RIRALLDERGYVRADADGENAVTEHGERLARLWGESDLLAAECLRHGVWERLTAPELAAV 791 Query 769 VSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGF 828 VSA+VYE+R +G P VP + +AL T RL L +DE+ HRI +REPD GF Sbjct 792 VSALVYESRRDNG---PV-PRVPAGAVSEALADTVRLWADLESDERRHRIDRTREPDLGF 847 Query 829 VRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQV 876 ++RW+R LA LAAA+ N G L AGDFVRWCRQVLDLLDQ+ Sbjct 848 AWPVHRWARGESLAQVLAAAEQN--GHELSAGDFVRWCRQVLDLLDQI 893 >gi|302527220|ref|ZP_07279562.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp. AA4] gi|302436115|gb|EFL07931.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp. AA4] Length=921 Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust. Identities = 526/915 (58%), Positives = 628/915 (69%), Gaps = 33/915 (3%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L RF+AE F DDFQ R C ALE GHGVLVCAPTGAGKTVVGEFAVHLALA G KCFY Sbjct 24 QLTRFSAESAFEFDDFQIRGCEALEEGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFY 83 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK+ DL RYG D +GLLTGD S+NGNA VVVMTTEVLRNMLYA S A+ Sbjct 84 TTPIKALSNQKYADLVERYGNDAVGLLTGDTSINGNAQVVVMTTEVLRNMLYAGSSAIPE 143 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 L YVVMDEVH+LADR RG VWEEVIL LP+ VRVV LSATVSNAEEFG W+ VRGDTTV Sbjct 144 LGYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEWLVEVRGDTTV 203 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQP----QVNRELLRHIAHRREADRMAD 241 VVDEHRPVPLWQH+LVG ++ DLF G+ E P ++N LLR + D + Sbjct 204 VVDEHRPVPLWQHMLVGNQLLDLF---AGQNEADPGEQLRINPTLLR------KTDDLGR 254 Query 242 WQP--------RRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCL 293 + P RR R +RPP R +V+ +LD GLLPAI F+FSRAGCDAAV QC+ Sbjct 255 FAPTFRGPRGGRRGAPPRGPRFRPPSRVDVVERLDHAGLLPAIVFIFSRAGCDAAVAQCV 314 Query 294 RSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRH 353 RS LRL ++ I ++D R DL + DL VLGY+EWRE L RG A HHAG+LPAF+ Sbjct 315 RSGLRLNGPDQVEEIRRIVDERTADLPEGDLGVLGYWEWREALERGFAGHHAGLLPAFKE 374 Query 354 TVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAG 413 TVEELF GLVK VFATETLALGINMPARTVVLERLVK+NGE H+ LTPGEYTQLTGRAG Sbjct 375 TVEELFVRGLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAG 434 Query 414 RRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRL 473 RRGID+EGHAVV W P ++P VAGLASTRT+PLRSSF P YNM +NLV ++G A L Sbjct 435 RRGIDIEGHAVVAWQPGVDPKAVAGLASTRTYPLRSSFRPGYNMAVNLVAQVGADAARDL 494 Query 474 LEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQA 533 LEQSFAQ+QADRSVVG R IER L A + G +LEY LRA++S E+ + Sbjct 495 LEQSFAQFQADRSVVGTARRIERNKEALKGYTAAISGDFDQMLEYVELRAKISAREKTLS 554 Query 534 RASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESARDR-DDPRPLVLTEHRWAG 592 R + RR +L LR+GD+I + GRR GLAVV++ D +PRP+V+TE RW+G Sbjct 555 RQNTSSRRAETAQSLEKLRKGDVIAVPAGRRAGLAVVVDPGLDPIREPRPVVVTEDRWSG 614 Query 593 RISSADY-SGTTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFH 651 +SSAD+ S +G + LPK +E R P+ RRD+ASALR +G+ +P +R A Sbjct 615 PLSSADFPSPVEALGRIRLPKHLELRSPKTRRDIASALRD--SGISLPGRQRRRTAAA-D 671 Query 652 DPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRF 711 D EL S R LR HP H E +R ERY R+ + QLERKVAA T+SLAR FDR Sbjct 672 DAELASLRRALRAHPCHGLAEREANLRWVERYQRLSAETEQLERKVAATTHSLARAFDRI 731 Query 712 VGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSA 771 + LL ER ++ + VT+ GR L R+YSESDLL AEC+R G W GL PAELA VVS Sbjct 732 LRLLGERGYVRPGDGEDRVTEHGRRLTRLYSESDLLAAECIRHGVWNGLGPAELAAVVST 791 Query 772 VVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRV 831 +V+E R D G P +P + A +TSRL L DE+ HR+ +REPD GF Sbjct 792 LVFEAR-RDTAGEP---RLPGGAVPGAWQETSRLWVELTEDERRHRLDRTREPDAGFAWP 847 Query 832 IYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNAAPNPE-LRATAK 890 +YRW+R L L AA+ N G L AGDFVRWCRQV+DLLDQ+R+ + + + A Sbjct 848 VYRWARGESLEKVLTAAETN--GQELSAGDFVRWCRQVIDLLDQIRDVLGKEDPVGSAAA 905 Query 891 RAIGDIRRGVVAVDA 905 +A+ +RRGVVA A Sbjct 906 QAVRALRRGVVAAGA 920 >gi|330468496|ref|YP_004406239.1| dsh domain-containing protein [Verrucosispora maris AB-18-032] gi|328811467|gb|AEB45639.1| dsh domain protein [Verrucosispora maris AB-18-032] Length=925 Score = 927 bits (2395), Expect = 0.0, Method: Compositional matrix adjust. Identities = 524/929 (57%), Positives = 630/929 (68%), Gaps = 49/929 (5%) Query 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLAL---- 57 ++ L+ FT+++ F LDDFQ+ AC ALERG GVLVCAPTGAGKTVVGEFAVHLAL Sbjct 19 SQFPALEEFTSDIGFDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGTP 78 Query 58 -------AAGSKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTE 110 A KCFYTTP+KALSNQK+ DL RYG Q+GLLTGD ++NG+APVVVMTTE Sbjct 79 GQPVPTDGARRKCFYTTPIKALSNQKYHDLVDRYGAAQVGLLTGDNAINGDAPVVVMTTE 138 Query 111 VLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAE 170 VLRNMLYA S L+GL+YVVMDEVH+LADR RG VWEEVI+ LP V +VSLSATVSNAE Sbjct 139 VLRNMLYAGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAE 198 Query 171 EFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHI 230 EF W+ TVRG+TTVVV EHRPVPLWQH+LVGKRMFDLF A + V+ ELLR+ Sbjct 199 EFADWLITVRGETTVVVSEHRPVPLWQHMLVGKRMFDLF--HDAAAARKHDVHPELLRYT 256 Query 231 AHRREADRMADWQPRRRGSGRPGFYRPP--------GRPEVIAKLDAEGLLPAITFVFSR 282 RE R D G GR + RP+++ +LD EGLLPAI F+FSR Sbjct 257 ---RETVRRLDL-----GEGRAAGWGGRRGPRWRGPSRPDIVERLDREGLLPAILFIFSR 308 Query 283 AGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAA 342 AGC AAV QCL + LRLTS EERA I V++ R + DL+VLGY+EW +GL RGLA+ Sbjct 309 AGCAAAVQQCLAAGLRLTSPEERAEIRRVVESRVTAIPGEDLSVLGYWEWLDGLERGLAS 368 Query 343 HHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTP 402 HHAGMLP F+ VEELF GLVKAVFATETLALGINMPAR VVLERLVK+NGE H+ LTP Sbjct 369 HHAGMLPVFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKYNGEAHVDLTP 428 Query 403 GEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLV 462 GEYTQLTGRAGRRGIDVEGHAVV+W PE +P VAGLASTRT+PLRSSF PSYNM +NLV Sbjct 429 GEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNLV 488 Query 463 HRMGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLR 522 +G A LLE SFAQ+QADRSVVGL R ++R + E EY LR Sbjct 489 GSVGADPARALLESSFAQFQADRSVVGLARQVQRNTETIEAYGVEAECHHGDFDEYFALR 548 Query 523 ARVSELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLE-SARDRDDPR 581 +++ ERA AR + QRR AA AL LR GD+I + GRR GLAVVL+ +A +PR Sbjct 549 VSIADRERALARQGQSQRRAAAVAALERLRVGDVIRVPSGRRAGLAVVLDPAAGGFSEPR 608 Query 582 PLVLTEHRWAGRISSADYSGTTP---VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVI 638 PLVLT+ RWAGRIS D+ TTP + + +PK R P RRDLA+ + + GL Sbjct 609 PLVLTQDRWAGRISPGDF--TTPAEVLARIRVPKHFNPRNPAARRDLAAQV--SGTGLDR 664 Query 639 PAARRVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVA 698 + R D +L R +LRRHP H P E+ R AER R+ERD +L +VA Sbjct 665 HSRRGARGRQSGEDHQLTQLRAELRRHPCHACPEREEHARWAERRRRLERDTEELRERVA 724 Query 699 AATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWE 758 T SLARTFDR V LLT R ++ VTD GR+L RI++E+DLLVAECLR G W+ Sbjct 725 GRTGSLARTFDRIVALLTTRGYLTAEGE---VTDAGRMLGRIWTEADLLVAECLRRGVWD 781 Query 759 GLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRI 818 GL PAELA VS VV+E R + A +P + +A+ T +L + + ADE A + Sbjct 782 GLSPAELAAAVSVVVFEAR----RDVDERASLPRGPVAEAVDATLKLWSEIEADEAARGL 837 Query 819 TPSREPDDGFVRVIYRWSRTGDLAAALAAA-DVNGSGSPLLAGDFVRWCRQVLDLLDQVR 877 T +REPD GF IYRW+R LA LA+ +++G + AGDFVRW RQV+DLL QV Sbjct 838 TVTREPDLGFAWPIYRWARGEALAKVLASGHELDGE---MPAGDFVRWARQVVDLLGQVA 894 Query 878 NA-APNPELRATAKRAIGDIRRGVVAVDA 905 ++ + ELRATA++AIG + RGV+A A Sbjct 895 DSGGASAELRATARQAIGVVNRGVLAYHA 923 >gi|300786755|ref|YP_003767046.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei U32] gi|299796269|gb|ADJ46644.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei U32] gi|340528239|gb|AEK43444.1| ATP-dependent RNA helicase HelY [Amycolatopsis mediterranei S699] Length=943 Score = 926 bits (2393), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/928 (57%), Positives = 624/928 (68%), Gaps = 37/928 (3%) Query 6 ELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFY 65 +L RF AE F D FQ R C ALE GHGVLVCAPTGAGKTVVGEFAVHLALA G KCFY Sbjct 24 QLTRFAAEASFEFDPFQIRGCEALEDGHGVLVCAPTGAGKTVVGEFAVHLALAEGRKCFY 83 Query 66 TTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQG 125 TTP+KALSNQK+ DL AR+G D +GLLTGD S+NGNA VVVMTTEVLRNMLYA S + Sbjct 84 TTPIKALSNQKYADLVARHGADAVGLLTGDTSINGNAQVVVMTTEVLRNMLYAGSSTIID 143 Query 126 LSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTV 185 L YVVMDEVH+LADR RG VWEEVIL LP+ VRVV LSATVSNAEEFG W+ VRGDTTV Sbjct 144 LGYVVMDEVHYLADRFRGAVWEEVILHLPEHVRVVGLSATVSNAEEFGEWLVEVRGDTTV 203 Query 186 VVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEG-QPQVNRELLR---HIAHRREADRMAD 241 VVDEHRPVPLWQH+LVG R+ DLF A G + ++N LLR I + Sbjct 204 VVDEHRPVPLWQHMLVGNRLLDLFAGDDVHAPGAELRINPTLLRRTEEIGRQYAPAGFRG 263 Query 242 WQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRLTS 301 + RR R +RPP R +V+ +LD GLLPAI F+FSRAGCDAAV QC+RS LRL Sbjct 264 PRGRRGAPPRMPRFRPPSRVDVVEQLDRAGLLPAIVFIFSRAGCDAAVAQCVRSGLRLNG 323 Query 302 EEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELFTA 361 E I VI+ R DL + DL VLGY+EWRE L RG+A HHAG+LPAF+ TVEELF Sbjct 324 PGEVEEIRRVIEERTADLPEGDLGVLGYWEWREALERGIAGHHAGLLPAFKETVEELFVR 383 Query 362 GLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDVEG 421 GLVK VFATETLALGINMPARTVVLERLVK+NGE H+ LTPGEYTQLTGRAGRRGIDVEG Sbjct 384 GLVKVVFATETLALGINMPARTVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDVEG 443 Query 422 HAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFAQY 481 HAVV W P ++P +VAGLASTRT+PLRSSF P YNM +NLV ++G +A LLEQSFAQ+ Sbjct 444 HAVVAWQPGVDPKQVAGLASTRTYPLRSSFRPGYNMAVNLVAQVGAAEARELLEQSFAQF 503 Query 482 QADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQRR 541 QADRSVVG R IER L A + G +LEY LRA++S E+A +R + RR Sbjct 504 QADRSVVGTARRIERNKEALKGYTAAVTGDFDEMLEYVELRAKISAREKALSRQNTAVRR 563 Query 542 QAATDALAALRRGDIITITHGRRGGLAVVLESARDR-DDPRPLVLTEHRWAGRISSADYS 600 ++L LR+GD+I + GRR GLAVV++ D +PRP+V+TE RW+G +S AD+ Sbjct 564 AGTAESLEKLRKGDVIAVPAGRRAGLAVVVDPGLDPIREPRPVVVTEDRWSGPLSVADFP 623 Query 601 G-TTPVGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSR 659 +G + LPK +E R PR RRD+AS LR+ AG+ +P R+ +G D EL + Sbjct 624 APVEALGRIKLPKHIELRSPRTRRDIASTLRN--AGISLP-GRQKRRSGANEDGELAVLQ 680 Query 660 EQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTERE 719 LR HP H E +R ERY R+ + QLERKVAA T+SLAR FDR + LL ER Sbjct 681 RALRAHPCHGLAEREANLRWVERYQRLAEETKQLERKVAATTHSLARAFDRILALLGERG 740 Query 720 FIDGPATDPV---------------------VTDDGRLLARIYSESDLLVAECLRTGAWE 758 ++ + V VT+ GR L R+YSESDLL AEC+R G W Sbjct 741 YLAAARSASVEGAGGGMDGLGPESAGDGEDRVTEHGRRLTRLYSESDLLAAECIRHGVWR 800 Query 759 GLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRI 818 L PAELA VVS +V+E R D G P +P + +A +T+RL L DE+ HR+ Sbjct 801 KLNPAELAAVVSTLVFEAR-RDTAGEP---RLPGGAVPEAWQETARLWVELTEDERRHRL 856 Query 819 TPSREPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRN 878 +REPD GF +YRW+R L L AA+ N G L AGDFVRW RQV+DLLDQ+R+ Sbjct 857 DRTREPDAGFAWPVYRWARGESLEKVLTAAEAN--GQELSAGDFVRWSRQVIDLLDQIRD 914 Query 879 AAPNPE-LRATAKRAIGDIRRGVVAVDA 905 + + A A A+ +RRGVVA A Sbjct 915 VLGKADPVGAAAAEAVKALRRGVVAAGA 942 >gi|302867438|ref|YP_003836075.1| DSH domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|315506152|ref|YP_004085039.1| dsh domain-containing protein [Micromonospora sp. L5] gi|302570297|gb|ADL46499.1| DSH domain protein [Micromonospora aurantiaca ATCC 27029] gi|315412771|gb|ADU10888.1| DSH domain protein [Micromonospora sp. L5] Length=926 Score = 924 bits (2387), Expect = 0.0, Method: Compositional matrix adjust. Identities = 519/915 (57%), Positives = 623/915 (69%), Gaps = 30/915 (3%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLAL--------- 57 LD F+ +L F LDDFQ+ AC ALERG GVLVCAPTGAGKTVVGEFAVHLAL Sbjct 24 LDEFSLDLGFDLDDFQREACEALERGSGVLVCAPTGAGKTVVGEFAVHLALRGRPGGDAP 83 Query 58 AAGSKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLY 117 A KCFYTTP+KALSNQK+ DL RYG +Q+GLLTGD ++NG+APVVVMTTEVLRNMLY Sbjct 84 ATRRKCFYTTPIKALSNQKYHDLVDRYGAEQVGLLTGDNAINGDAPVVVMTTEVLRNMLY 143 Query 118 ADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQ 177 A S L+GL+YVVMDEVH+LADR RG VWEEVI+ LP+ V +VSLSATVSNAEEF W+ Sbjct 144 AGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPESVTLVSLSATVSNAEEFADWLV 203 Query 178 TVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAH-RREA 236 TVRG+T VVV EHRPVPLWQH+LVGKRMFDLF +A + V+ ELLR+ R Sbjct 204 TVRGETAVVVSEHRPVPLWQHMLVGKRMFDLF--HDADAARKHDVHPELLRYTRDTMRRL 261 Query 237 DRMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSP 296 + G R +R P RP+++ +LD EGLLPAI F+FSRAGCDAAV QCL + Sbjct 262 ELGEGRSAGPGGGRRGPRWRGPMRPDIVDRLDREGLLPAILFIFSRAGCDAAVQQCLAAG 321 Query 297 LRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVE 356 LRLTS +ERA I V++ R + DL+VLGY+EW +GL RGLAAHHAGMLPAF+ VE Sbjct 322 LRLTSPDERAEIRRVVESRVTAIPGEDLSVLGYWEWLDGLERGLAAHHAGMLPAFKEVVE 381 Query 357 ELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRG 416 ELF GLVKAVFATETLALGINMPAR VVLERLVKFNGE H+ LTPGEYTQLTGRAGRRG Sbjct 382 ELFVRGLVKAVFATETLALGINMPARCVVLERLVKFNGEAHVDLTPGEYTQLTGRAGRRG 441 Query 417 IDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQ 476 IDVEGHAVV+W PE +P VAGLASTRT+PLRSSF PSYNM +NLV +G A LLE Sbjct 442 IDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNLVGSVGAAPARELLES 501 Query 477 SFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARAS 536 SFAQ+QADRSVVGL R ++R + E EY LR +++ ERA AR Sbjct 502 SFAQFQADRSVVGLARQVQRNTETIDAYGVEAACHHGDFDEYFALRVAIADRERAIARQG 561 Query 537 RLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESAR-DRDDPRPLVLTEHRWAGRIS 595 + QR+ AA +L LR GD+I + GRR GLAVVL+ A +PRPLVLT+ RWAGR++ Sbjct 562 QTQRKAAAVASLERLRVGDVIRVPSGRRAGLAVVLDPATGGFGEPRPLVLTQDRWAGRVT 621 Query 596 SADYSGTTPVGSMT---LPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHD 652 D+ TTP +T +PK HR P RRDLA+A+ S D Sbjct 622 PGDF--TTPAEVLTRIRVPKHFNHRSPAARRDLAAAVSGTGLDRHGGRRGGRSRQAVGED 679 Query 653 PELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFV 712 L R +LR HP H P E+ R AER R+ERD +L ++V+ T SLARTFDR V Sbjct 680 HRLSQLRVELRAHPCHACPDREEHARWAERRRRLERDTEELRQRVSGRTGSLARTFDRIV 739 Query 713 GLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAV 772 LLT R ++ A D VTD GR+LARI++E+DLLVAECLR W+GL PAELA VS V Sbjct 740 ALLTARGYL---AADGEVTDAGRMLARIWTEADLLVAECLRRRVWDGLSPAELAAAVSVV 796 Query 773 VYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVI 832 V+E R + A +P + A+ +T +L + ADE A + +REPD GF I Sbjct 797 VFEAR----RDVDERASLPRGAVADAVDETLKLWGDIEADEAARGLAVTREPDLGFAWPI 852 Query 833 YRWSRTGDLAAALAAA-DVNGSGSPLLAGDFVRWCRQVLDLLDQVRNA-APNPELRATAK 890 YRW+R LA LA+ ++G + AGDFVRW RQV+DLL QV ++ + ELR TA+ Sbjct 853 YRWARGEALAKVLASGHQIDGE---MPAGDFVRWARQVVDLLGQVADSGGASAELRGTAR 909 Query 891 RAIGDIRRGVVAVDA 905 +AI + RGV+A A Sbjct 910 QAIAAVNRGVLAYHA 924 >gi|238059066|ref|ZP_04603775.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] gi|237880877|gb|EEP69705.1| DEAD/DEAH box helicase domain-containing protein [Micromonospora sp. ATCC 39149] Length=933 Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/930 (57%), Positives = 624/930 (68%), Gaps = 43/930 (4%) Query 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLAL---- 57 ++ LD FT +L F LDDFQ+ AC ALERG GVLVCAPTGAGKTVVGEFAVHLAL Sbjct 19 SQFPALDEFTLDLGFDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGAP 78 Query 58 ------------AAGSKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVV 105 A KCFYTTP+KALSNQK+ DL RYG +GLLTGD ++NG+APVV Sbjct 79 GRPAAADGDDAPPARRKCFYTTPIKALSNQKYHDLVERYGVAHVGLLTGDNAINGDAPVV 138 Query 106 VMTTEVLRNMLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSAT 165 VMTTEVLRNMLYA S L+GL+YVVMDEVH+LADR RG VWEEVI+ LP V +VSLSAT Sbjct 139 VMTTEVLRNMLYAGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPSSVTLVSLSAT 198 Query 166 VSNAEEFGGWIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRE 225 VSNAEEF W+ TVRG+T VVV EHRPVPLWQH+LVGKRMFDLF +A + V+ E Sbjct 199 VSNAEEFADWLVTVRGETAVVVSEHRPVPLWQHMLVGKRMFDLF--HDADAARKHDVHPE 256 Query 226 LLRHIAHRREADRMADWQPRRRGSGRPGFYRPPG----RPEVIAKLDAEGLLPAITFVFS 281 LLR+ RE R + R G P RP+++ +LD EGLLPAI F+FS Sbjct 257 LLRYT---RETMRRLELGEGRSAGPGGGRRGPRWRGPLRPDIVDRLDREGLLPAILFIFS 313 Query 282 RAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLA 341 RAGC AAV QCL + LRLTS EERA I V++ R + DL VLGY+EW +GL RGLA Sbjct 314 RAGCAAAVQQCLAAGLRLTSPEERAEIRRVVESRVTAIPGEDLTVLGYWEWLDGLERGLA 373 Query 342 AHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLT 401 AHHAGMLP F+ VEELF GLVKAVFATETLALGINMPAR VVLERLVKFNGE H+ LT Sbjct 374 AHHAGMLPVFKEVVEELFVRGLVKAVFATETLALGINMPARCVVLERLVKFNGEAHVDLT 433 Query 402 PGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINL 461 PGEYTQLTGRAGRRGIDVEGHAVV+W PE +P VAGLASTRT+PLRSSF PSYNM +NL Sbjct 434 PGEYTQLTGRAGRRGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNL 493 Query 462 VHRMGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARL 521 V +G + A LLE SFAQ+QADRSVVGL R ++R + AE EY L Sbjct 494 VGTVGAEPARALLESSFAQFQADRSVVGLARQVQRNTETIDAYGAEAACHHGDFDEYFAL 553 Query 522 RARVSELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESAR-DRDDP 580 R +++ ERA AR + QR+ AA AL LR GD+I + GRR GLAVVL+ A +P Sbjct 554 RVAIADRERAIARQGQHQRKAAAVAALERLRVGDVIRVPSGRRAGLAVVLDPATGGFGEP 613 Query 581 RPLVLTEHRWAGRISSADYSGTTP---VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLV 637 RPLVLT+ RWAGR+S D+ TTP + + +PK HR P RRDLA+ + Sbjct 614 RPLVLTQDRWAGRVSPGDF--TTPAEVLARIRVPKHFNHRSPAARRDLAAEVSGTGLDRH 671 Query 638 IPAARRVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKV 697 S G D L R +LRRHP H P E+ R AER R+ERD +L +V Sbjct 672 GGRRGGRSRQGSGEDHALSQLRAELRRHPCHACPEREEHARWAERRRRLERDTEELRERV 731 Query 698 AAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAW 757 A T SLARTFDR V LLT R ++ + D VTD GR+L RI++E+DLLVAECLR G W Sbjct 732 AGRTGSLARTFDRIVALLTARGYL---SADGAVTDAGRMLGRIWTEADLLVAECLRRGVW 788 Query 758 EGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHR 817 +GL PAELA VS VV+E R + A +P + +A+ +T L + + ADE A Sbjct 789 DGLSPAELASAVSVVVFEAR----RDVDERASLPRGPVSEAVDETLNLWSGIEADEAARG 844 Query 818 ITPSREPDDGFVRVIYRWSRTGDLAAALAAA-DVNGSGSPLLAGDFVRWCRQVLDLLDQV 876 + +REPD GF IYRW+R LA LA+ +++G + AGDFVRW RQV+DLL Q+ Sbjct 845 LAVTREPDLGFAWPIYRWARGEALAKVLASGHEIDGE---MPAGDFVRWARQVVDLLGQL 901 Query 877 RNA-APNPELRATAKRAIGDIRRGVVAVDA 905 ++ + ELRATA++AI + RGV+A A Sbjct 902 ADSGGASAELRATARQAIAAVNRGVLAYHA 931 >gi|145594787|ref|YP_001159084.1| DSH domain-containing protein [Salinispora tropica CNB-440] gi|145304124|gb|ABP54706.1| DSH domain protein [Salinispora tropica CNB-440] Length=935 Score = 920 bits (2379), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/911 (56%), Positives = 623/911 (69%), Gaps = 26/911 (2%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS----- 61 LD F +L LDDFQ+ AC ALERG GVLVCAPTGAGKTVVGEFAVHLAL G+ Sbjct 37 LDEFALDLGVDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGGTSADTG 96 Query 62 --KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYAD 119 KCFYTTP+KALSNQK+ DL R+G DQ+GLLTGD ++NG+APVVVMTTEVLRNMLYA Sbjct 97 RRKCFYTTPIKALSNQKYHDLVDRHGADQVGLLTGDNAINGDAPVVVMTTEVLRNMLYAG 156 Query 120 SPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTV 179 S L+GL+YVVMDEVH+LADR RG VWEEVI+ LP V +VSLSATVSNAEEF W+ TV Sbjct 157 SATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFADWLVTV 216 Query 180 RGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRREADRM 239 RG+T VVV EHRPVPLWQH+LVG+RMFDLF +A + V+ ELLR+ Sbjct 217 RGETEVVVSEHRPVPLWQHMLVGRRMFDLF--HDADAARKHDVHPELLRYTRDTLRRLES 274 Query 240 ADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPLRL 299 + + G R +R P RP+++ +LD EGLLPAI F+FSRAGCDAAV QCL + LRL Sbjct 275 GEGRGAGPGGRRGPRWRGPMRPDIVDRLDREGLLPAILFIFSRAGCDAAVQQCLAAGLRL 334 Query 300 TSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEELF 359 T EERA I V++ R + DL+VLGY++W +GL RGLAAHHAGMLPAF+ VEELF Sbjct 335 TGPEERAEIRRVVESRITTIPGEDLSVLGYWDWLDGLERGLAAHHAGMLPAFKEVVEELF 394 Query 360 TAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGIDV 419 GLVKAVFATETLALGINMPAR VVLERLVK+NGE H+ LTPGEYTQLTGRAGRRGIDV Sbjct 395 VRGLVKAVFATETLALGINMPARCVVLERLVKYNGEAHVDLTPGEYTQLTGRAGRRGIDV 454 Query 420 EGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQSFA 479 EGHAVV+W PE +P VAGLASTRT+PLRSSF PSYNM +NLV +G + A LLE SFA Sbjct 455 EGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNLVGSVGAEPARALLESSFA 514 Query 480 QYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASRLQ 539 Q+QADRSVVGL R ++R + AE Y +R +++ ER AR + Q Sbjct 515 QFQADRSVVGLARQVQRNTETVQAYGAEAACQHGDFDAYFAIRVAIADRERELARQGQSQ 574 Query 540 RRQAATDALAALRRGDIITITHGRRGGLAVVLE-SARDRDDPRPLVLTEHRWAGRISSAD 598 R+ AA +L LR GD+I + GRR GLAVVL+ +A +PRPLVLT+ RWAGR+ D Sbjct 575 RKAAAVVSLERLRVGDVIRVPSGRRAGLAVVLDPAAAGFGEPRPLVLTQDRWAGRVGPGD 634 Query 599 YSGTTPVGSMT---LPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGFHDPEL 655 + TTP +T +PK HR P RRDLA+A+ S G D L Sbjct 635 F--TTPAEVLTRIRVPKHFNHRSPAARRDLAAAVSGTGLNRHGGRRGGRSRRGAGEDDRL 692 Query 656 ESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDRFVGLL 715 R +LRRHP H P E+ R AER R+E+D +L ++V T SLARTFDR V LL Sbjct 693 VQLRAELRRHPCHACPEREEHARWAERRRRLEKDTQELRQRVTGRTGSLARTFDRIVALL 752 Query 716 TEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVSAVVYE 775 T R ++ A+D VTD GR+L+RI++E+DLLVAECLR G W GL PAELA VS VV+E Sbjct 753 TARGYL---ASDGGVTDAGRMLSRIWTEADLLVAECLRRGVWSGLSPAELAAAVSVVVFE 809 Query 776 TRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRW 835 R + A +P + A+ +T +L + ADE A +T +REPD GF +YRW Sbjct 810 AR----RDVDERASLPRGAVATAVDETLKLWGEIEADEAAQGLTVTREPDLGFAWPVYRW 865 Query 836 SRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNA-APNPELRATAKRAIG 894 +R LA L + ++G + AGDFVRW RQV+DLL Q+ ++ + ELR+TA++AI Sbjct 866 ARGEPLAKVLVSGHIDGE---MPAGDFVRWARQVVDLLGQLADSGGASAELRSTARQAIV 922 Query 895 DIRRGVVAVDA 905 + RGV++ A Sbjct 923 AVNRGVLSYQA 933 >gi|159037970|ref|YP_001537223.1| DEAD/DEAH box helicase domain-containing protein [Salinispora arenicola CNS-205] gi|157916805|gb|ABV98232.1| DEAD/DEAH box helicase domain protein [Salinispora arenicola CNS-205] Length=922 Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust. Identities = 511/916 (56%), Positives = 623/916 (69%), Gaps = 26/916 (2%) Query 2 TELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGS 61 ++ LD F +L LDDFQ+ AC ALERG GVLVCAPTGAGKTVVGEFAVHLAL G+ Sbjct 19 SQFPVLDEFALDLGVDLDDFQREACQALERGSGVLVCAPTGAGKTVVGEFAVHLALRGGT 78 Query 62 -------KCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRN 114 KCFYTTP+KALSNQK+ DL R+G Q+GLLTGD ++NG+APVVVMTTEVLRN Sbjct 79 SAPAQRRKCFYTTPIKALSNQKYHDLVDRHGAAQVGLLTGDNAINGDAPVVVMTTEVLRN 138 Query 115 MLYADSPALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGG 174 MLYA S L+GL+YVVMDEVH+LADR RG VWEEVI+ LP V +VSLSATVSNAEEF Sbjct 139 MLYAGSATLEGLAYVVMDEVHYLADRFRGGVWEEVIIHLPASVTLVSLSATVSNAEEFAD 198 Query 175 WIQTVRGDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRR 234 W+ TVRG+T VVV EHRPVPLWQH+LVG+RMFDLF +A + V+ ELLRH Sbjct 199 WLVTVRGETAVVVSEHRPVPLWQHMLVGRRMFDLF--HDADAARKHDVHPELLRHTRDTL 256 Query 235 EADRMADWQPRRRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLR 294 + + G R +R P RP+++ +LD EGLLPAI F+FSRAGCDAAV QCL Sbjct 257 RRLEPGEGRGAGPGGRRGPRWRGPMRPDIVDRLDREGLLPAILFIFSRAGCDAAVQQCLA 316 Query 295 SPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHT 354 + LRLT EERA I V++ R + DL+VLGY++W +GL RGLAAHHAGMLPAF+ Sbjct 317 AGLRLTGPEERAEIRRVVESRITAIPGEDLSVLGYWDWLDGLERGLAAHHAGMLPAFKEV 376 Query 355 VEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGR 414 VEELF GLVKAVFATETLALGINMPAR VVLERLVK+NGE H+ LTPGEYTQLTGRAGR Sbjct 377 VEELFVRGLVKAVFATETLALGINMPARCVVLERLVKYNGEAHVDLTPGEYTQLTGRAGR 436 Query 415 RGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLL 474 RGIDVEGHAVV+W PE +P VAGLASTRT+PLRSSF PSYNM +NLV +G + A LL Sbjct 437 RGIDVEGHAVVVWSPETDPRHVAGLASTRTYPLRSSFRPSYNMAVNLVGSVGAEPARALL 496 Query 475 EQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQAR 534 E SFAQ+QADRSVVGL R ++R + + +AE Y +R +++ ERA AR Sbjct 497 ESSFAQFQADRSVVGLARQVQRNSETIEAYSAEAACQHGDFDGYFAIRVAIADRERALAR 556 Query 535 ASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESAR-DRDDPRPLVLTEHRWAGR 593 + QRR AA +L LR GD+I + GRR GLAVVL+ A +PRPLVLT+ RWAGR Sbjct 557 QGQSQRRAAAVVSLERLRVGDVIRVPSGRRAGLAVVLDPATAGFGEPRPLVLTQDRWAGR 616 Query 594 ISSADYSGTTP---VGSMTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAARRVSEAGGF 650 + D+ TTP + + +PK HR P RRDLA+ + S GG Sbjct 617 VGPGDF--TTPAEVLARIRVPKHFNHRSPAARRDLAAEVSGTGLDRHGGRRGGRSRRGGG 674 Query 651 HDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATNSLARTFDR 710 D L R +LRRHP H P E+ R AER R+E+D +L ++VA T SLARTFDR Sbjct 675 EDDRLVQLRAELRRHPCHACPEREEHARWAERRRRLEKDTEELRQRVAGRTGSLARTFDR 734 Query 711 FVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKPAELAGVVS 770 V LLT R ++ A D VT+ GR L+RI++E+DLLVAECLR G W GL PAELA VS Sbjct 735 IVALLTARGYL---APDGAVTEAGRTLSRIWTEADLLVAECLRRGVWGGLSPAELAAAVS 791 Query 771 AVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPSREPDDGFVR 830 VV+E R + A +P + A+ +T +L + ADE A + +REPD GF Sbjct 792 VVVFEAR----RDLDERASLPRGAVATAVDETLKLWGEIEADEAARGLAVTREPDLGFAW 847 Query 831 VIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVRNA-APNPELRATA 889 +YRW+R LA L + V+G + AGDFVRW RQV+DLL Q+ ++ + ELR+ A Sbjct 848 PVYRWARGEPLAKVLVSGHVDGE---MPAGDFVRWARQVVDLLGQLADSGGASAELRSNA 904 Query 890 KRAIGDIRRGVVAVDA 905 ++AI + RGV+A A Sbjct 905 RQAITAVNRGVLAYQA 920 >gi|284991142|ref|YP_003409696.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284064387|gb|ADB75325.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus DSM 43160] Length=951 Score = 905 bits (2340), Expect = 0.0, Method: Compositional matrix adjust. Identities = 502/903 (56%), Positives = 599/903 (67%), Gaps = 52/903 (5%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L FTA+L FSLD FQ +AC AL+ G GVLVCAPTGAGKTVVGEFAVH ALA G K FYT Sbjct 20 LADFTAQLGFSLDPFQVQACEALDEGSGVLVCAPTGAGKTVVGEFAVHKALAEGRKAFYT 79 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQK+ DL RYG ++GLLTGD ++NG+APVVVMTTEVLRNMLYA+SPA+ GL Sbjct 80 TPIKALSNQKYNDLAERYGEGKVGLLTGDNAINGDAPVVVMTTEVLRNMLYAESPAIDGL 139 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 YVVMDEVH+LADR RG VWEEVI+ LP V +VSLSATVSNAEEF W+ TVRG T VV Sbjct 140 GYVVMDEVHYLADRFRGAVWEEVIIHLPQSVTLVSLSATVSNAEEFADWLVTVRGHTEVV 199 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIG---------------EAEGQPQVNRELLRHIA 231 V E RP+PLWQH+LVG R+FDLF R G V+ EL+R++ Sbjct 200 VSEVRPIPLWQHMLVGNRVFDLFSLRPAAHAAEQGDDPRGQSTRERGASVVDPELVRYV- 258 Query 232 HRREADRMADWQPRRRGSGR-----PGFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCD 286 R RM W GS R Y+PP R +VI +LD GLLPAITFVFSR GCD Sbjct 259 -REHERRMDTWGGGNGGSRRERDWHKPRYKPPARADVIERLDRSGLLPAITFVFSRNGCD 317 Query 287 AAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAG 346 AAV QCLR+ LRLT E ER+ IA +ID R G L + DL VLG++EWREGLL GLAAHHAG Sbjct 318 AAVDQCLRAGLRLTDEHERSEIAAIIDERTGSLPEEDLHVLGFWEWREGLLAGLAAHHAG 377 Query 347 MLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYT 406 ++PAF+ TVEE F GLVKAVFATETLALGINMPARTVVLERLVK+NGE H+ +TPGEYT Sbjct 378 LVPAFKETVEECFVRGLVKAVFATETLALGINMPARTVVLERLVKWNGEAHVDVTPGEYT 437 Query 407 QLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMG 466 QLTGRAGRRGIDVEGHAVV+W P ++PS VAGLASTRT+PL+SSF PSYNM +NLV G Sbjct 438 QLTGRAGRRGIDVEGHAVVVWAPGMDPSVVAGLASTRTYPLKSSFRPSYNMAVNLVSSFG 497 Query 467 PQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVS 526 A LL SFAQ+QADRSVVGL R R R AAE+ + YARLR ++ Sbjct 498 RANARELLASSFAQFQADRSVVGLARAAARHERDAERWAAEMHSEGGDVAGYARLRQDIA 557 Query 527 ELERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLE-SARDRDDPRPLVL 585 E E+ +R S +RR A+DALAALR GD+I + GRR GLAVVL+ D +PRPLVL Sbjct 558 EREKELSRDSAAKRRIEASDALAALRPGDVIRVPSGRRQGLAVVLDPGVTDLTEPRPLVL 617 Query 586 TEHRWAGRISSADYSGTTPVGSMT---LPKRVEHRQPRVRRDLASALRSAAAGLVIPAAR 642 TE +WAGR+ + D+ TPV ++ +P+ HR P RRDLA+ LR+A + A R Sbjct 618 TEDKWAGRLGAVDFP--TPVTALARVRVPRNFNHRSPHARRDLAATLRNARVENDLGARR 675 Query 643 RVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATN 702 + DP L R LR HPVH P E+++R AER+LR R+ R++A T Sbjct 676 VRQRSAAADDPVLHDLRRALRAHPVHALPDREERVRAAERWLRATREAEATHRRMAERTG 735 Query 703 SLARTFDRFVGLLTEREF----------------IDGPATD--PVVTDDGRLLARIYSES 744 SL R FDR +L E + +D D PVVTDDGR LARI+SE+ Sbjct 736 SLTRQFDRTCDVLEELGYLVPDPAAPPVTAGEDPVDHEVADVAPVVTDDGRRLARIWSEA 795 Query 745 DLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSR 804 DLLVAECLR+G W GL PAELA VS +V+E R + P VP ++ A+ + R Sbjct 796 DLLVAECLRSGVWRGLTPAELAAAVSTLVFEAR----REMPGQPAVPAGKVSAAIAEMRR 851 Query 805 LSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVR 864 + L+ E H + R+ D GF YRW+ L LA A+ +G+ L GDFVR Sbjct 852 IRARLQDVELDHGVPAGRDLDLGFAWAAYRWADGQSLDRVLAGAE--QAGTELSGGDFVR 909 Query 865 WCR 867 W R Sbjct 910 WAR 912 >gi|291440653|ref|ZP_06580043.1| helicase [Streptomyces ghanaensis ATCC 14672] gi|291343548|gb|EFE70504.1| helicase [Streptomyces ghanaensis ATCC 14672] Length=937 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 503/935 (54%), Positives = 608/935 (66%), Gaps = 60/935 (6%) Query 7 LDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYT 66 L F F LD FQ AC ALE G GVLV APTG+GKT+VGEFAVHLAL G KCFYT Sbjct 25 LASFREMYDFGLDPFQIEACRALEEGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYT 84 Query 67 TPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGL 126 TP+KALSNQK+ DL RYG DQ+GLLTGD SVN +APVVVMTTEVLRNMLYA S L GL Sbjct 85 TPIKALSNQKYADLCRRYGTDQVGLLTGDNSVNSDAPVVVMTTEVLRNMLYAGSQTLLGL 144 Query 127 SYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVV 186 YVVMDEVH+L+DR RG VWEEVI+ LP+ V +VSLSATVSNAEEFG W+ TVRGDT V+ Sbjct 145 GYVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTEVI 204 Query 187 VDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ-VNRELLRHIAHRREADRMADWQPR 245 V EHRPVPL+QHVL G+R++DLF+ E EG+ + VN +L R R EA R W R Sbjct 205 VSEHRPVPLFQHVLAGRRIYDLFE----EGEGRKKAVNPDLTRMA--RLEASR-PPWGDR 257 Query 246 RRGSGRPGFYR------------PPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCL 293 RRG G P RPEVI +LDAEGLLPAITF+FSRA C+AAV QCL Sbjct 258 RRGRGNMREADRERERRQRSRVWTPSRPEVIERLDAEGLLPAITFIFSRAACEAAVQQCL 317 Query 294 RSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRH 353 + LRL EE RAR+ +++ R + DL VLGYYEW EGL RG+AAHHAGMLP F+ Sbjct 318 YAGLRLNDEEARARVRALVEERTASIPAEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKE 377 Query 354 TVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAG 413 VEELF GLVKAVFATETLALGINMPAR+VVLE+LVK+NGEQH +TPGEYTQLTGRAG Sbjct 378 VVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEYTQLTGRAG 437 Query 414 RRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRL 473 RRGIDVEGHAVV+W + P +AGLA TRT+PLRSSF PSYNM +NLV + G ++ L Sbjct 438 RRGIDVEGHAVVLWQRGMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVEQFGRHRSREL 497 Query 474 LEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQA 533 LE SFAQ+QAD+SVVG+ R ++R L A + EYARLR + + E A Sbjct 498 LETSFAQFQADKSVVGISRQVQRNEEGLEGYKASMTCHLGDFDEYARLRRELKDRETELA 557 Query 534 RASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESA------------RDRDDPR 581 R QRR + AL L+ GD+I + G+ GLA+VL+ D PR Sbjct 558 RQGAAQRRAESAVALERLKPGDVIHVPTGKYAGLALVLDPGLPAGRSNGHRGFDQHDGPR 617 Query 582 PLVLTEHRWAGRISSADYSGTTPVGS---MTLPKRVEHRQPRVRRDLASALRSAAAGLVI 638 PLVLT R R++S D+ PV + M +PK R P+ RRDLASALR+ AG + Sbjct 618 PLVLTAERQVKRLASIDFP--VPVEALERMRIPKSFNPRSPQSRRDLASALRT-KAGHIA 674 Query 639 PAARRVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVA 698 P R + D E+ R+ +R HP H ED R AERY R+ RD +QLER++ Sbjct 675 PERHRKKRSQAADDREIARLRKAIRAHPCHGCDDREDHARWAERYHRLLRDTSQLERRIE 734 Query 699 AATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWE 758 TN++ARTFDR V LLTE +++ G VT+ G+ LAR+Y E DLL +ECLR G WE Sbjct 735 GRTNTIARTFDRIVALLTEMDYLRGDE----VTEHGKRLARLYGELDLLASECLREGVWE 790 Query 759 GLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRI 818 GL PAELA VSA+VYE R D AP +P+ R + AL + R+ L A E+ RI Sbjct 791 GLAPAELAACVSALVYEARVSDDAMAP---KLPSGRAKAALGEMVRIWGRLDALEEDFRI 847 Query 819 TPS-----REPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLL 873 T + REPD GF Y W+ L L A+ + AGDFVRWC+QV+D+L Sbjct 848 TQTEGVGQREPDLGFAWAAYMWASGKGLDEVLREAE-------MPAGDFVRWCKQVIDVL 900 Query 874 DQVRNAAPNPE---LRATAKRAIGDIRRGVVAVDA 905 Q+ AAP E + A++A+ + RGVVA + Sbjct 901 GQISAAAPAAEGSTVAKNARKAVDGLLRGVVAYSS 935 >gi|289772656|ref|ZP_06532034.1| helicase [Streptomyces lividans TK24] gi|289702855|gb|EFD70284.1| helicase [Streptomyces lividans TK24] Length=944 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/939 (54%), Positives = 610/939 (65%), Gaps = 58/939 (6%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 V + L F F LD FQ AC ALE G GVLV APTG+GKT+VGEFAVHLAL G Sbjct 28 VEQATALASFREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQG 87 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTP+KALSNQK+ DL RYG D++GLLTGD SVN APVVVMTTEVLRNMLYA S Sbjct 88 RKCFYTTPIKALSNQKYADLCRRYGTDKVGLLTGDNSVNSEAPVVVMTTEVLRNMLYAGS 147 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 L GL +VVMDEVH+L+DR RG VWEEVI+ LP+ V +VSLSATVSNAEEFG W+ TVR Sbjct 148 QTLLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVR 207 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ-VNRELLRHIAHRREADRM 239 GDT V+V EHRPVPL+QHVL G+RM+DLF+ EAEG + VN +L R R EA R Sbjct 208 GDTQVIVSEHRPVPLFQHVLAGRRMYDLFE----EAEGHKKAVNPDLTRMA--RLEASR- 260 Query 240 ADWQPRRRGSGRP-----------GFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAA 288 +Q RRRG P RPEVI +LD+EGLLPAITF+FSRAGC+AA Sbjct 261 PSYQDRRRGRAMKEADRERERRQRSRVWTPSRPEVIERLDSEGLLPAITFIFSRAGCEAA 320 Query 289 VTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGML 348 V QCL + LRL E R R+ +++ R + DL VLGYYEW EGL RG+AAHHAGML Sbjct 321 VQQCLYAGLRLNDEGARERVRALVEERTSSIPREDLHVLGYYEWLEGLERGIAAHHAGML 380 Query 349 PAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQL 408 P F+ VEELF GLVKAVFATETLALGINMPAR+VVLE+LVK+NGEQH +TPGE+TQL Sbjct 381 PTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEFTQL 440 Query 409 TGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQ 468 TGRAGRRGIDVEGHAVV+W + P +AGLA TRT+PLRSSF PSYNM +NLV + G Sbjct 441 TGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVDQFGRH 500 Query 469 QAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSEL 528 ++ LLE SFAQ+QAD+SVVG+ R ++R L A + EYARLR + + Sbjct 501 RSRELLETSFAQFQADKSVVGISRQVQRNEEGLEGYKASMTCHLGDFDEYARLRRELKDR 560 Query 529 ERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESA------------RD 576 E+ AR QRR A AL L+ GD+I + G+ GLA+VL+ Sbjct 561 EQELARQGANQRRAEAAVALEKLKPGDVIHVPTGKYAGLALVLDPGLPAGRSNGHRGFDH 620 Query 577 RDDPRPLVLTEHRWAGRISSADYSGTTPVGS---MTLPKRVEHRQPRVRRDLASALRSAA 633 D PRPLVLT R R++S D+ PV + M +PK R P+ RRDLASALRS Sbjct 621 HDGPRPLVLTAERQVKRLASIDFP--VPVEALDRMRIPKSFNARSPQSRRDLASALRS-K 677 Query 634 AGLVIPAARRVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQL 693 AG + P R + D E+ R+ +R HP H ED R AERY R+ RD +QL Sbjct 678 AGHITPERARKKRSQAADDREINRLRKAIRAHPCHGCDDREDHARWAERYHRLLRDTSQL 737 Query 694 ERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLR 753 ER++ TN++ARTFDR V LLTE +++ G VT+ G+ LAR+Y E DLL +ECLR Sbjct 738 ERRIEGRTNTIARTFDRIVALLTELDYLRGDE----VTEHGKRLARLYGELDLLASECLR 793 Query 754 TGAWEGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADE 813 G WEGL PAELA VSA+V+E+R D AP VP+ R + AL +T R+ L A E Sbjct 794 EGVWEGLSPAELAACVSALVFESRAADDATAP---KVPSGRAKAALGETVRIWGRLDALE 850 Query 814 QAHRITPS-----REPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQ 868 + RI+ + REPD GF Y W+ L L + + AGDFVRWC+Q Sbjct 851 EDFRISQTEGVGQREPDLGFAWAAYMWASGKGLDEVLREVE-------MPAGDFVRWCKQ 903 Query 869 VLDLLDQVRNAAP--NPELRATAKRAIGDIRRGVVAVDA 905 V+D+L Q+ AAP + A++A+ ++ RGVVA + Sbjct 904 VIDVLGQISAAAPGAGSTVPKNARKAVDELLRGVVAYSS 942 >gi|262202396|ref|YP_003273604.1| DEAD/DEAH box helicase [Gordonia bronchialis DSM 43247] gi|262085743|gb|ACY21711.1| DEAD/DEAH box helicase domain protein [Gordonia bronchialis DSM 43247] Length=932 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/949 (55%), Positives = 621/949 (66%), Gaps = 63/949 (6%) Query 4 LAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKC 63 ++ LD FTA L F LDDFQ RAC+ALE GHGVLVCAPTGAGKT+VGEFAVHLALA G+KC Sbjct 1 MSRLDEFTARLDFRLDDFQIRACTALEAGHGVLVCAPTGAGKTIVGEFAVHLALAGGTKC 60 Query 64 FYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPAL 123 FYTTP+KALSNQK+ DL A +G + +GLLTGD S+N +APVVVMTTEV+RNM+YA+S AL Sbjct 61 FYTTPIKALSNQKYADLAAVHGPESVGLLTGDSSINPDAPVVVMTTEVVRNMIYANSRAL 120 Query 124 QGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDT 183 GLS+VVMDEVHFLADR RG VWEEVIL L VRVVSLSATVSNAEEFG WIQTVRGDT Sbjct 121 NGLSHVVMDEVHFLADRFRGAVWEEVILHLEPSVRVVSLSATVSNAEEFGDWIQTVRGDT 180 Query 184 TVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQVNRELLRHIAHRR-EADRMADW 242 +V+VDEHRPVPL QH+LVG R+FDLF G + +P+VN EL I HR AD + Sbjct 181 SVIVDEHRPVPLSQHMLVGSRLFDLFAP--GGPDDRPRVNPELKSFIRHRMLFADEESPA 238 Query 243 QPR------------------------RRGSGRPGFYRPPGRPEVIAKLDAEGLLPAITF 278 + R RRGSG RP ++A+LD EGLLPAI F Sbjct 239 RDRSGGDGRHRGQRGGRGRAHSPRTRQRRGSG------ALSRPNMVARLDREGLLPAIGF 292 Query 279 VFSRAGCDAAVTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLR 338 +FSRAGCD A+ QCLRS L L E A + EV+D +L+ SD VLG EWR GL R Sbjct 293 IFSRAGCDGALAQCLRSGLSLLDPPEAALVDEVVDRHLSELSPSDAEVLGVDEWRAGLRR 352 Query 339 GLAAHHAGMLPAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHM 398 G AAHHAG+LP FRH VEELF GLV+ VFATETLALGINMPAR+VVLERLVK+NGE H+ Sbjct 353 GFAAHHAGLLPTFRHAVEELFVRGLVRMVFATETLALGINMPARSVVLERLVKYNGESHV 412 Query 399 PLTPGEYTQLTGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMT 458 LTPGE+TQLTGRAGRRGIDVEGHAVV+W PE+ P EVAGLA RTFPLRSSFAP YNM Sbjct 413 DLTPGEFTQLTGRAGRRGIDVEGHAVVVWTPEVAPEEVAGLAGARTFPLRSSFAPEYNMA 472 Query 459 INLVHRMGPQQAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAEL---------- 508 +NL+ R+G + LL +SFAQ+QADRSVVG R ++ G R L ++ EL Sbjct 473 VNLIGRLGMAGSRELLNRSFAQFQADRSVVGQARKLDDGYRALRKLDVELAGAAANRGIE 532 Query 509 ----GGSDAP--ILEYARLRARVSELERAQARASRLQRRQAATDALAALRRGDIITITHG 562 G +D P L Y LR + ER R+ A LA L+RG +I + G Sbjct 533 PGEPGATDDPTGFLGYMTLREDIRRRERELKFRRRVSTHDAIAADLATLKRGHVIGVPGG 592 Query 563 RRGGLAVVLESARDRDDPRPLVLTEHRWAGRISSADYSGTTPV-GSMTLPKRVEHRQPRV 621 R GLAVVLE A DP+PLVL+E W GR+ D+ V G+M LPK + R R Sbjct 593 RHRGLAVVLEPASQPADPKPLVLSEDAWCGRVGIRDFVNPPDVLGNMRLPKNADRRTGRG 652 Query 622 RRDLASALRSAAAGLVIPAARRVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAE 681 RRDLASALRS G+ P R+ + D EL R L+ HP H P +D R AE Sbjct 653 RRDLASALRS--TGIEAPRGRQKRRSEAADDTELAQMRRALKAHPAHQLPPGDDLFRLAE 710 Query 682 RYLRIERDNAQLERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIY 741 R R+ RD ER + A T++L TF VG+LTE +++ VTD GRLL RIY Sbjct 711 RRNRLVRDIGNAERAIDARTSTLGVTFGHIVGVLTELGYLEHAGDTVTVTDAGRLLGRIY 770 Query 742 SESDLLVAECLRTGAWEGLKPAELAGVVSAVVYETRGGDGQGA---PFGADVPTPRLRQA 798 SESDL+V ECLR G WEGL P ELA VV+++VYE+R +G P A V R A Sbjct 771 SESDLVVTECLRAGVWEGLAPPELAAVVASLVYESRRDSYRGVDAMPGNAGV-----RAA 825 Query 799 LTQTSRLSTTLRADEQAHRITPSREPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLL 858 + T+ + T + E+ H++TP+REPD GF + W+ L ALAAA G L Sbjct 826 MAATAAVWTEVTEVERRHQVTPTREPDTGFSVAVSLWASGRSLTEALAAA--GERGQLLS 883 Query 859 AGDFVRWCRQVLDLLDQVR-NAAPNPELRATAKRAIGDIRRGVVAVDAG 906 GDFVRW RQV+DLL+Q+R A P+ L + + A+G IRRGVVA + G Sbjct 884 PGDFVRWNRQVVDLLEQIRLGAGPDSPLGSVVRSAVGSIRRGVVAAELG 932 >gi|29833237|ref|NP_827871.1| ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680] gi|29610359|dbj|BAC74406.1| putative ATP-dependent RNA helicase [Streptomyces avermitilis MA-4680] Length=937 Score = 894 bits (2309), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/932 (54%), Positives = 606/932 (66%), Gaps = 60/932 (6%) Query 10 FTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAGSKCFYTTPL 69 F F LD FQ AC ALE G GVLV APTG+GKT+VGEFAVHLAL G KCFYTTP+ Sbjct 28 FREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQGKKCFYTTPI 87 Query 70 KALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADSPALQGLSYV 129 KALSNQK+ DL RYG D++GLLTGD SVN +APVVVMTTEVLRNMLYA S L GL YV Sbjct 88 KALSNQKYADLARRYGADKVGLLTGDNSVNSDAPVVVMTTEVLRNMLYAGSQTLLGLGYV 147 Query 130 VMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVRGDTTVVVDE 189 VMDEVH+L+DR RG VWEEVI+ LP+ V +VSLSATVSNAEEFG W+ TVRGDT V+V E Sbjct 148 VMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVRGDTQVIVSE 207 Query 190 HRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ-VNRELLRHIAHRREADRMADWQPRRRG 248 HRPVPL+QHVL G+RM+DLF+ E EG + VN +L R R EA R +Q R+RG Sbjct 208 HRPVPLFQHVLAGRRMYDLFE----EGEGHKKAVNPDLTR--LARMEASR-PSYQDRKRG 260 Query 249 SGRPGFYR-----------PPGRPEVIAKLDAEGLLPAITFVFSRAGCDAAVTQCLRSPL 297 R PGRPEVI +LDAEGLLPAITF+FSRA C+AAV QCL + L Sbjct 261 RAMREADRERERRQRSRVWTPGRPEVIERLDAEGLLPAITFIFSRAACEAAVQQCLYAGL 320 Query 298 RLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGMLPAFRHTVEE 357 RL E R ++ +++ R + DL VLGYYEW EGL RG+AAHHAGMLP F+ VEE Sbjct 321 RLNDEAARDKVRALVEERTASIPTEDLHVLGYYEWLEGLERGIAAHHAGMLPTFKEVVEE 380 Query 358 LFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQLTGRAGRRGI 417 LF GLVKAVFATETLALGINMPAR+VVLE+LVK+NGEQH +TPGEYTQLTGRAGRRGI Sbjct 381 LFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEYTQLTGRAGRRGI 440 Query 418 DVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQQAHRLLEQS 477 DVEGHAVV+W P +AGLA TRT+PLRSSF PSYNM +NLV + G ++ LLE S Sbjct 441 DVEGHAVVLWQRGFSPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVDQFGRHRSRELLETS 500 Query 478 FAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSELERAQARASR 537 FAQ+QAD+SVVG+ R ++R L + EYARLR + + E A+ Sbjct 501 FAQFQADKSVVGISRQVQRNEEGLEGYKESMTCHLGDFEEYARLRRELKDRETELAKQGA 560 Query 538 LQRRQAATDALAALRRGDIITITHGRRGGLAVVLESA------------RDRDDPRPLVL 585 QRR A AL L+ GD+I + G+ GLA+VL+ D PRPLVL Sbjct 561 AQRRAEAAVALEKLKPGDVIHVPTGKYAGLALVLDPGLPAGRSNGHRGFEQHDGPRPLVL 620 Query 586 TEHRWAGRISSADYSGTTPVGS---MTLPKRVEHRQPRVRRDLASALRSAAAGLVIPAAR 642 T R R++S D+ PV + M +PK R P+ RRDLASALR+ AG ++P Sbjct 621 TAERQVKRLASMDFP--VPVEALERMRIPKSFNPRSPQSRRDLASALRT-KAGHIVPDRH 677 Query 643 RVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQLERKVAAATN 702 R + D E+ R +LR HP H ED R AERY R+ RD +QLER++ TN Sbjct 678 RKGRSAAADDREIARLRAELRAHPCHGCNDREDHARWAERYYRLMRDTSQLERRIEGRTN 737 Query 703 SLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLRTGAWEGLKP 762 ++ARTFDR V LLTE +++ G VT G+ LAR+Y E DLL +ECLR G WEGL P Sbjct 738 TIARTFDRIVALLTELDYLRGDE----VTAHGKRLARLYGELDLLASECLRAGVWEGLDP 793 Query 763 AELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADEQAHRITPS- 821 AELA VSA+VYE+R GD AP +P+ + + AL + R+ L A E+ RIT + Sbjct 794 AELAACVSALVYESRVGDDAMAP---KLPSGKAKAALGEMVRIWGRLDALEEDFRITQTE 850 Query 822 ----REPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQVLDLLDQVR 877 REPD GF Y W+ L L A+ + AGDFVRWC+QV+D+L Q+ Sbjct 851 GVGQREPDLGFAWAAYMWASGKGLDEVLREAE-------MPAGDFVRWCKQVIDVLGQIS 903 Query 878 NAAP----NPELRATAKRAIGDIRRGVVAVDA 905 AAP + A++A+ ++ RGVVA + Sbjct 904 AAAPVRGEGSTVAKNARKAVDELLRGVVAYSS 935 >gi|21220127|ref|NP_625906.1| helicase [Streptomyces coelicolor A3(2)] gi|6119673|emb|CAB59484.1| putative helicase [Streptomyces coelicolor A3(2)] Length=950 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 500/939 (54%), Positives = 610/939 (65%), Gaps = 58/939 (6%) Query 1 VTELAELDRFTAELPFSLDDFQQRACSALERGHGVLVCAPTGAGKTVVGEFAVHLALAAG 60 V + L F F LD FQ AC ALE G GVLV APTG+GKT+VGEFAVHLAL G Sbjct 34 VEQATALASFREMYDFGLDPFQIEACQALEAGKGVLVAAPTGSGKTIVGEFAVHLALQQG 93 Query 61 SKCFYTTPLKALSNQKHTDLTARYGRDQIGLLTGDLSVNGNAPVVVMTTEVLRNMLYADS 120 KCFYTTP+KALSNQK+ DL RYG D++GLLTGD SVN APVVVMTTEVLRNMLYA S Sbjct 94 RKCFYTTPIKALSNQKYADLCRRYGTDKVGLLTGDNSVNSEAPVVVMTTEVLRNMLYAGS 153 Query 121 PALQGLSYVVMDEVHFLADRMRGPVWEEVILQLPDDVRVVSLSATVSNAEEFGGWIQTVR 180 L GL +VVMDEVH+L+DR RG VWEEVI+ LP+ V +VSLSATVSNAEEFG W+ TVR Sbjct 154 QTLLGLGHVVMDEVHYLSDRFRGAVWEEVIIHLPESVTLVSLSATVSNAEEFGDWLDTVR 213 Query 181 GDTTVVVDEHRPVPLWQHVLVGKRMFDLFDYRIGEAEGQPQ-VNRELLRHIAHRREADRM 239 GDT V+V EHRPVPL+QHVL G+RM+DLF+ EAEG + VN +L R R EA R Sbjct 214 GDTQVIVSEHRPVPLFQHVLAGRRMYDLFE----EAEGHKKAVNPDLTRMA--RLEASR- 266 Query 240 ADWQPRRRGSGRP-----------GFYRPPGRPEVIAKLDAEGLLPAITFVFSRAGCDAA 288 +Q RRRG P RPEVI +LD+EGLLPAITF+FSRAGC+AA Sbjct 267 PSYQDRRRGRAMKEADRERERRQRSRVWTPSRPEVIERLDSEGLLPAITFIFSRAGCEAA 326 Query 289 VTQCLRSPLRLTSEEERARIAEVIDHRCGDLADSDLAVLGYYEWREGLLRGLAAHHAGML 348 V QCL + LRL E R R+ +++ R + DL VLGYYEW EGL RG+AAHHAGML Sbjct 327 VQQCLYAGLRLNDEGARERVRALVEERTSSIPREDLHVLGYYEWLEGLERGIAAHHAGML 386 Query 349 PAFRHTVEELFTAGLVKAVFATETLALGINMPARTVVLERLVKFNGEQHMPLTPGEYTQL 408 P F+ VEELF GLVKAVFATETLALGINMPAR+VVLE+LVK+NGEQH +TPGE+TQL Sbjct 387 PTFKEVVEELFVRGLVKAVFATETLALGINMPARSVVLEKLVKWNGEQHADITPGEFTQL 446 Query 409 TGRAGRRGIDVEGHAVVIWHPEIEPSEVAGLASTRTFPLRSSFAPSYNMTINLVHRMGPQ 468 TGRAGRRGIDVEGHAVV+W + P +AGLA TRT+PLRSSF PSYNM +NLV + G Sbjct 447 TGRAGRRGIDVEGHAVVLWQRAMNPEHLAGLAGTRTYPLRSSFKPSYNMAVNLVDQFGRH 506 Query 469 QAHRLLEQSFAQYQADRSVVGLVRGIERGNRILGEIAAELGGSDAPILEYARLRARVSEL 528 ++ LLE SFAQ+QAD+SVVG+ R ++R L A + EYARLR + + Sbjct 507 RSRELLETSFAQFQADKSVVGISRQVQRNEEGLEGYKASMTCHLGDFDEYARLRRELKDR 566 Query 529 ERAQARASRLQRRQAATDALAALRRGDIITITHGRRGGLAVVLESA------------RD 576 E+ AR QRR A AL L+ GD+I + G+ GLA+VL+ Sbjct 567 EQELARQGANQRRAEAAVALEKLKPGDVIHVPTGKYAGLALVLDPGLPAGRSNGHRGFDH 626 Query 577 RDDPRPLVLTEHRWAGRISSADYSGTTPVGS---MTLPKRVEHRQPRVRRDLASALRSAA 633 D PRPLVLT R R++S D+ PV + M +PK R P+ RRDLASALRS Sbjct 627 HDGPRPLVLTAERQVKRLASIDFP--VPVEALDRMRIPKSFNARSPQSRRDLASALRS-K 683 Query 634 AGLVIPAARRVSEAGGFHDPELESSREQLRRHPVHTSPGLEDQIRQAERYLRIERDNAQL 693 AG + P R + D E+ R+ +R HP H ED R AERY R+ RD +QL Sbjct 684 AGHITPERARKKRSQAADDREINRLRKAIRAHPCHGCDDREDHARWAERYHRLLRDTSQL 743 Query 694 ERKVAAATNSLARTFDRFVGLLTEREFIDGPATDPVVTDDGRLLARIYSESDLLVAECLR 753 ER++ TN++ARTFDR V LLTE +++ G VT+ G+ LAR+Y E DLL +ECLR Sbjct 744 ERRIEGRTNTIARTFDRIVALLTELDYLRGDE----VTEHGKRLARLYGELDLLASECLR 799 Query 754 TGAWEGLKPAELAGVVSAVVYETRGGDGQGAPFGADVPTPRLRQALTQTSRLSTTLRADE 813 G WEGL PAELA VSA+V+E+R D AP VP+ R + AL +T R+ L A E Sbjct 800 EGVWEGLSPAELAACVSALVFESRAADDATAP---KVPSGRAKAALGETVRIWGRLDALE 856 Query 814 QAHRITPS-----REPDDGFVRVIYRWSRTGDLAAALAAADVNGSGSPLLAGDFVRWCRQ 868 + RI+ + REPD GF Y W+ L L + + AGDFVRWC+Q Sbjct 857 EDFRISQTEGVGQREPDLGFAWAAYMWASGKGLDEVLREVE-------MPAGDFVRWCKQ 909 Query 869 VLDLLDQVRNAAP--NPELRATAKRAIGDIRRGVVAVDA 905 V+D+L Q+ AAP + A++A+ ++ RGVVA + Sbjct 910 VIDVLGQISAAAPGAGSTVPKNARKAVDELLRGVVAYSS 948 Lambda K H 0.320 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 2233650381542 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40