BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2095c Length=316 Score E Sequences producing significant alignments: (Bits) Value gi|15609232|ref|NP_216611.1| hypothetical protein Rv2095c [Mycob... 627 1e-177 gi|31793278|ref|NP_855771.1| hypothetical protein Mb2122c [Mycob... 625 3e-177 gi|289750690|ref|ZP_06510068.1| conserved hypothetical protein [... 623 9e-177 gi|340627108|ref|YP_004745560.1| hypothetical protein MCAN_21221... 614 5e-174 gi|183983080|ref|YP_001851371.1| hypothetical protein MMAR_3081 ... 512 2e-143 gi|118617837|ref|YP_906169.1| hypothetical protein MUL_2327 [Myc... 512 3e-143 gi|342859799|ref|ZP_08716452.1| hypothetical protein MCOL_13008 ... 490 2e-136 gi|41407929|ref|NP_960765.1| hypothetical protein MAP1831c [Myco... 480 1e-133 gi|254775077|ref|ZP_05216593.1| hypothetical protein MaviaA2_104... 477 8e-133 gi|118464193|ref|YP_881607.1| hypothetical protein MAV_2408 [Myc... 476 2e-132 gi|296165176|ref|ZP_06847724.1| transcriptional regulator family... 476 2e-132 gi|254819638|ref|ZP_05224639.1| hypothetical protein MintA_06934... 468 4e-130 gi|15827691|ref|NP_301954.1| DNA-binding protein [Mycobacterium ... 455 5e-126 gi|108799440|ref|YP_639637.1| transcriptional regulator-like pro... 439 3e-121 gi|126435094|ref|YP_001070785.1| transcriptional regulator-like ... 436 2e-120 gi|120404415|ref|YP_954244.1| transcriptional regulator-like pro... 434 1e-119 gi|118472326|ref|YP_888179.1| hypothetical protein MSMEG_3888 [M... 422 4e-116 gi|145223679|ref|YP_001134357.1| transcriptional regulator-like ... 414 1e-113 gi|169629272|ref|YP_001702921.1| hypothetical protein MAB_2186 [... 384 1e-104 gi|333990758|ref|YP_004523372.1| hypothetical protein JDM601_211... 379 2e-103 gi|325676823|ref|ZP_08156496.1| transcriptional regulator family... 338 7e-91 gi|312139727|ref|YP_004007063.1| transcriptional regulator [Rhod... 337 1e-90 gi|467014|gb|AAA17199.1| B2126_C2_220 [Mycobacterium leprae] 336 3e-90 gi|226306656|ref|YP_002766616.1| proteasome accessory factor C [... 333 3e-89 gi|229493685|ref|ZP_04387470.1| conserved hypothetical protein [... 332 4e-89 gi|333919682|ref|YP_004493263.1| hypothetical protein AS9A_2014 ... 327 1e-87 gi|1666183|emb|CAB04764.1| ORF11(1) [Rhodococcus erythropolis] 322 7e-86 gi|226359991|ref|YP_002777769.1| proteasome accessory factor C [... 321 1e-85 gi|54025135|ref|YP_119377.1| hypothetical protein nfa31660 [Noca... 320 2e-85 gi|111017858|ref|YP_700830.1| hypothetical protein RHA1_ro00839 ... 314 1e-83 gi|256376376|ref|YP_003100036.1| transcriptional regulator prote... 281 1e-73 gi|343927933|ref|ZP_08767399.1| proteasome accessory factor C [G... 277 1e-72 gi|330468509|ref|YP_004406252.1| hypothetical protein VAB18032_2... 275 5e-72 gi|238064542|ref|ZP_04609251.1| hypothetical protein MCAG_05508 ... 272 4e-71 gi|257056200|ref|YP_003134032.1| putative transcriptional regula... 271 8e-71 gi|302867428|ref|YP_003836065.1| hypothetical protein Micau_2958... 271 1e-70 gi|240172776|ref|ZP_04751435.1| hypothetical protein MkanA1_2591... 270 3e-70 gi|331697093|ref|YP_004333332.1| putative transcriptional regula... 265 9e-69 gi|317508591|ref|ZP_07966252.1| hypothetical protein HMPREF9336_... 263 2e-68 gi|296393803|ref|YP_003658687.1| hypothetical protein Srot_1392 ... 261 8e-68 gi|262202393|ref|YP_003273601.1| transcriptional regulator [Gord... 261 9e-68 gi|145594781|ref|YP_001159078.1| hypothetical protein Strop_2250... 260 3e-67 gi|134098829|ref|YP_001104490.1| transcriptional regulator-like ... 259 5e-67 gi|159037964|ref|YP_001537217.1| hypothetical protein Sare_2368 ... 258 9e-67 gi|326382286|ref|ZP_08203978.1| transcriptional regulator-like p... 243 2e-62 gi|284991138|ref|YP_003409692.1| transcriptional regulator-like ... 239 4e-61 gi|325001562|ref|ZP_08122674.1| transcriptional regulator-like p... 236 3e-60 gi|291301915|ref|YP_003513193.1| hypothetical protein Snas_4455 ... 234 1e-59 gi|300786761|ref|YP_003767052.1| HTH type 11 transcriptional reg... 231 1e-58 gi|302527215|ref|ZP_07279557.1| conserved hypothetical protein [... 228 7e-58 >gi|15609232|ref|NP_216611.1| hypothetical protein Rv2095c [Mycobacterium tuberculosis H37Rv] gi|15841586|ref|NP_336623.1| hypothetical protein MT2156 [Mycobacterium tuberculosis CDC1551] gi|121637980|ref|YP_978204.1| hypothetical protein BCG_2115c [Mycobacterium bovis BCG str. Pasteur 1173P2] 71 more sequence titles Length=316 Score = 627 bits (1616), Expect = 1e-177, Method: Compositional matrix adjust. Identities = 316/316 (100%), Positives = 316/316 (100%), Gaps = 0/316 (0%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL Sbjct 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA Sbjct 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 Query 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH Sbjct 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV Sbjct 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 Query 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR Sbjct 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 Query 301 DAATAALDAYQAAAPP 316 DAATAALDAYQAAAPP Sbjct 301 DAATAALDAYQAAAPP 316 >gi|31793278|ref|NP_855771.1| hypothetical protein Mb2122c [Mycobacterium bovis AF2122/97] gi|31618870|emb|CAD96975.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] Length=316 Score = 625 bits (1612), Expect = 3e-177, Method: Compositional matrix adjust. Identities = 315/316 (99%), Positives = 315/316 (99%), Gaps = 0/316 (0%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL Sbjct 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA Sbjct 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 Query 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH Sbjct 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV Sbjct 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 Query 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 APSASWMLEYYPIRELRQLPDGSCEV MTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR Sbjct 241 APSASWMLEYYPIRELRQLPDGSCEVVMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 Query 301 DAATAALDAYQAAAPP 316 DAATAALDAYQAAAPP Sbjct 301 DAATAALDAYQAAAPP 316 >gi|289750690|ref|ZP_06510068.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691277|gb|EFD58706.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=316 Score = 623 bits (1607), Expect = 9e-177, Method: Compositional matrix adjust. Identities = 315/316 (99%), Positives = 315/316 (99%), Gaps = 0/316 (0%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL Sbjct 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEFCGDTIEVTFSA IDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA Sbjct 61 IDFEFCGDTIEVTFSACIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 Query 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH Sbjct 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV Sbjct 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 Query 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR Sbjct 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 Query 301 DAATAALDAYQAAAPP 316 DAATAALDAYQAAAPP Sbjct 301 DAATAALDAYQAAAPP 316 >gi|340627108|ref|YP_004745560.1| hypothetical protein MCAN_21221 [Mycobacterium canettii CIPT 140010059] gi|340005298|emb|CCC44454.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=316 Score = 614 bits (1584), Expect = 5e-174, Method: Compositional matrix adjust. Identities = 311/316 (99%), Positives = 312/316 (99%), Gaps = 0/316 (0%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL Sbjct 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA Sbjct 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 Query 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 AAGAVAAVAEQ PTESPAAAAVRAAVR+ RALTIDYYAASHDTLTTRIVDPIRVLLIGGH Sbjct 121 AAGAVAAVAEQVPTESPAAAAVRAAVRDRRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPE ARQAPPDTSLFDGDLSLPSATLRV Sbjct 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPEPARQAPPDTSLFDGDLSLPSATLRV 240 Query 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 APSA WMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR Sbjct 241 APSALWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 Query 301 DAATAALDAYQAAAPP 316 DAATAALDAYQAAAPP Sbjct 301 DAATAALDAYQAAAPP 316 >gi|183983080|ref|YP_001851371.1| hypothetical protein MMAR_3081 [Mycobacterium marinum M] gi|183176406|gb|ACC41516.1| conserved protein [Mycobacterium marinum M] Length=322 Score = 512 bits (1319), Expect = 2e-143, Method: Compositional matrix adjust. Identities = 276/319 (87%), Positives = 290/319 (91%), Gaps = 6/319 (1%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS +STRLVRLLNMVPYFQANPRITR EAAAELGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MSPVSTRLVRLLNMVPYFQANPRITRVEAAAELGVSAKQLEEDLNQLWMCGLPGYFPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 Query 121 A------AGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 A + ++AV E AP ESPAAAAVR+AV + RALTIDYY+ASHDTLTTR VDPIRV Sbjct 121 AAGAAGHSSTLSAVDEPAPLESPAAAAVRSAVLDKRALTIDYYSASHDTLTTRTVDPIRV 180 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLP 234 LLIGGHSYLEAWSRE+EGVRLFRFDRIVDA ELGEPA+PPE A QAPPDTSLFDGD +LP Sbjct 181 LLIGGHSYLEAWSRESEGVRLFRFDRIVDAVELGEPAMPPEPAVQAPPDTSLFDGDPALP 240 Query 235 SATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPES 294 SATLRVAPSASWM EYYPIRELRQL DGSCEVAMTYASEDWMTRL+LGFGS V+VL PES Sbjct 241 SATLRVAPSASWMFEYYPIRELRQLADGSCEVAMTYASEDWMTRLMLGFGSTVQVLEPES 300 Query 295 LAQRVRDAATAALDAYQAA 313 LAQRVR AA AL+AYQAA Sbjct 301 LAQRVRAAAATALNAYQAA 319 >gi|118617837|ref|YP_906169.1| hypothetical protein MUL_2327 [Mycobacterium ulcerans Agy99] gi|118569947|gb|ABL04698.1| conserved protein [Mycobacterium ulcerans Agy99] Length=322 Score = 512 bits (1319), Expect = 3e-143, Method: Compositional matrix adjust. Identities = 276/319 (87%), Positives = 290/319 (91%), Gaps = 6/319 (1%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS +STRLVRLLNMVPYFQANPRITR EAAAELGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MSPVSTRLVRLLNMVPYFQANPRITRVEAAAELGVSAKQLEEDLNQLWMCGLPGYFPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 Query 121 A------AGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 A + ++AV E AP ESPAAAAVR+AV + RALTIDYY+ASHDTLTTR VDPIRV Sbjct 121 AAGAAEHSSTLSAVDEPAPLESPAAAAVRSAVLDKRALTIDYYSASHDTLTTRTVDPIRV 180 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLP 234 LLIGGHSYLEAWSRE+EGVRLFRFDRIVDA ELGEPA+PPE A QAPPDTSLFDGD +LP Sbjct 181 LLIGGHSYLEAWSRESEGVRLFRFDRIVDAVELGEPAMPPEPAVQAPPDTSLFDGDPALP 240 Query 235 SATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPES 294 SATLRVAPSASWM EYYPIRELRQL DGSCEVAMTYASEDWMTRL+LGFGS V+VL PES Sbjct 241 SATLRVAPSASWMFEYYPIRELRQLADGSCEVAMTYASEDWMTRLMLGFGSTVQVLEPES 300 Query 295 LAQRVRDAATAALDAYQAA 313 LAQRVR AA AL+AYQAA Sbjct 301 LAQRVRAAAATALNAYQAA 319 >gi|342859799|ref|ZP_08716452.1| hypothetical protein MCOL_13008 [Mycobacterium colombiense CECT 3035] gi|342132931|gb|EGT86151.1| hypothetical protein MCOL_13008 [Mycobacterium colombiense CECT 3035] Length=322 Score = 490 bits (1261), Expect = 2e-136, Method: Compositional matrix adjust. Identities = 252/309 (82%), Positives = 276/309 (90%), Gaps = 8/309 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ +STRL+RLLNMVPYFQANPR+TRA+AAA+LGV+AKQLE+DLNQLWMCGLPGYSPGDL Sbjct 1 MTPISTRLIRLLNMVPYFQANPRVTRAKAAADLGVSAKQLEDDLNQLWMCGLPGYSPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTI+VTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI Sbjct 61 IDFEFSGDTIDVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIEG 120 Query 121 AAGAVA--------AVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AAGA+ AV E AP E+ AAAAVRAAV++ RAL IDYY+ASHDTLT+RIVDPI Sbjct 121 AAGALGHDASAAASAVDEPAPVENRAAAAVRAAVQSRRALAIDYYSASHDTLTSRIVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLLIGG SYLE WSREAEGVRLFRFDRIVDA+EL EPA PPE QAPPDTSLFDGD S Sbjct 181 RVLLIGGQSYLEGWSREAEGVRLFRFDRIVDASELDEPAAPPEPVLQAPPDTSLFDGDPS 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSA LRVAP+ASWM EYYP+R++R+LPDGSCE MTYASEDWMTRL+LGFG+DV+VL P Sbjct 241 LPSAKLRVAPAASWMFEYYPMRDVRELPDGSCEAVMTYASEDWMTRLVLGFGADVQVLQP 300 Query 293 ESLAQRVRD 301 SLAQRVRD Sbjct 301 ASLAQRVRD 309 >gi|41407929|ref|NP_960765.1| hypothetical protein MAP1831c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396283|gb|AAS04148.1| hypothetical protein MAP_1831c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336462036|gb|EGO40884.1| putative transcriptional regulator [Mycobacterium avium subsp. paratuberculosis S397] Length=322 Score = 480 bits (1236), Expect = 1e-133, Method: Compositional matrix adjust. Identities = 245/308 (80%), Positives = 267/308 (87%), Gaps = 8/308 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ +STRLVRLLNMVPYFQANPR+TRA+AAA+LGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MTPISTRLVRLLNMVPYFQANPRVTRAKAAADLGVSAKQLEEDLNQLWMCGLPGYFPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPL+LTSPEATGLLVALRALADIPGVVDP+AARSAIAKI Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLRLTSPEATGLLVALRALADIPGVVDPEAARSAIAKIEG 120 Query 121 AAGAVAAVAEQAPT--ESPAAAAVRAAV------RNSRALTIDYYAASHDTLTTRIVDPI 172 AAGAV QA T + PA A RAA ++ AL IDYY+ASHDTLT+R+VDPI Sbjct 121 AAGAVGHDTTQAATAVDEPAPAESRAAAAVRAAVQSRHALAIDYYSASHDTLTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLLIGGHSYLEAWSREAEGVRLFRFDRIV+A+EL EPA PPE APPDTSLFDGD S Sbjct 181 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVEASELDEPAAPPEPVLHAPPDTSLFDGDPS 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSATLRVAP ASWM EYYP+R++R+LPDGSCE MTYASEDWMTRL+LG GS V+VLAP Sbjct 241 LPSATLRVAPHASWMFEYYPMRDVRELPDGSCEAVMTYASEDWMTRLVLGLGSGVQVLAP 300 Query 293 ESLAQRVR 300 SLAQRVR Sbjct 301 HSLAQRVR 308 >gi|254775077|ref|ZP_05216593.1| hypothetical protein MaviaA2_10446 [Mycobacterium avium subsp. avium ATCC 25291] Length=322 Score = 477 bits (1228), Expect = 8e-133, Method: Compositional matrix adjust. Identities = 245/308 (80%), Positives = 266/308 (87%), Gaps = 8/308 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ +STRLVRLLNMVPYFQANPR+TRA+AAA+LGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MTPISTRLVRLLNMVPYFQANPRVTRAKAAADLGVSAKQLEEDLNQLWMCGLPGYFPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPL+LTSPEATGLLVALRALADIPGVVDP+AARSAIAKI Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLRLTSPEATGLLVALRALADIPGVVDPEAARSAIAKIEG 120 Query 121 AAGAVAAVAEQAPT--ESPAAAAVRAAV------RNSRALTIDYYAASHDTLTTRIVDPI 172 AAGAV QA T + PA A RAA ++ AL IDYY+AS DTLT+R+VDPI Sbjct 121 AAGAVGHDTTQAATAVDEPAPAESRAAAAVRAAVQSRHALAIDYYSASRDTLTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLLIGGHSYLEAWSREAEGVRLFRFDRIV+A+EL EPA PPE APPDTSLFDGD S Sbjct 181 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVEASELDEPAAPPEPVLHAPPDTSLFDGDPS 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSATLRVAP ASWM EYYP+R+LR+LPDGSCE MTYASEDWMTRL+LG GS V+VLAP Sbjct 241 LPSATLRVAPHASWMFEYYPMRDLRELPDGSCEAVMTYASEDWMTRLVLGLGSGVQVLAP 300 Query 293 ESLAQRVR 300 SLAQRVR Sbjct 301 HSLAQRVR 308 >gi|118464193|ref|YP_881607.1| hypothetical protein MAV_2408 [Mycobacterium avium 104] gi|118165480|gb|ABK66377.1| conserved hypothetical protein [Mycobacterium avium 104] Length=322 Score = 476 bits (1226), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 244/308 (80%), Positives = 266/308 (87%), Gaps = 8/308 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ +STRLVRLLNMVPYFQANPR+TRA+AAA+LGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MTPISTRLVRLLNMVPYFQANPRVTRAKAAADLGVSAKQLEEDLNQLWMCGLPGYFPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPL+LTSPEATGLLVALRALADIPGVVDP+AARSAIAKI Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLRLTSPEATGLLVALRALADIPGVVDPEAARSAIAKIEG 120 Query 121 AAGAVAAVAEQAPT--ESPAAAAVRAAV------RNSRALTIDYYAASHDTLTTRIVDPI 172 AAGAV QA T + PA A RAA ++ AL IDYY+AS DTLT+R+VDPI Sbjct 121 AAGAVGHDTTQAATAVDEPAPAESRAAAAVRAAVQSRHALAIDYYSASRDTLTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLLIGGHSYLEAWSREAEGVRLFRFDRIV+A+EL EPA PPE APPDTSLFDGD S Sbjct 181 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVEASELDEPAAPPEPVLHAPPDTSLFDGDPS 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSATLRVAP ASWM EYYP+R++R+LPDGSCE MTYASEDWMTRL+LG GS V+VLAP Sbjct 241 LPSATLRVAPHASWMFEYYPMRDVRELPDGSCEAVMTYASEDWMTRLVLGLGSGVQVLAP 300 Query 293 ESLAQRVR 300 SLAQRVR Sbjct 301 HSLAQRVR 308 >gi|296165176|ref|ZP_06847724.1| transcriptional regulator family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899484|gb|EFG78942.1| transcriptional regulator family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=323 Score = 476 bits (1225), Expect = 2e-132, Method: Compositional matrix adjust. Identities = 261/323 (81%), Positives = 287/323 (89%), Gaps = 8/323 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+++STRLVRLLNMVPYFQANPR+TRA+AAA+LGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MTSVSTRLVRLLNMVPYFQANPRVTRAKAAADLGVSAKQLEEDLNQLWMCGLPGYYPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDF+F GDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDP+AARSAIAKI A Sbjct 61 IDFQFAGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPEAARSAIAKIEA 120 Query 121 AAGA--------VAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AAGA V AV E P ESPAAAAVRAAV++ AL IDYY+ASHDT+T+R+VDPI Sbjct 121 AAGAAGHEATGAVTAVDEAPPAESPAAAAVRAAVQHKHALAIDYYSASHDTMTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDA EL E A PPE A QAPPDTSLFDGD + Sbjct 181 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDATELDESAAPPELAVQAPPDTSLFDGDPA 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSA LRVAP+ASWM EYYP+RE+R+LPDGSC+ MTYASEDWMTRL+LGFGS VRVL P Sbjct 241 LPSARLRVAPTASWMFEYYPMREVRELPDGSCDAVMTYASEDWMTRLVLGFGSAVRVLEP 300 Query 293 ESLAQRVRDAATAALDAYQAAAP 315 ESLA+RVRDAA AA ++Y+A P Sbjct 301 ESLAKRVRDAAAAACESYEALTP 323 >gi|254819638|ref|ZP_05224639.1| hypothetical protein MintA_06934 [Mycobacterium intracellulare ATCC 13950] Length=323 Score = 468 bits (1205), Expect = 4e-130, Method: Compositional matrix adjust. Identities = 247/303 (82%), Positives = 269/303 (89%), Gaps = 8/303 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+A+STRLVRLLNMVPYFQANPR+TRA+AAA+LGV+AKQLEEDLNQLWMCGLPGY PGDL Sbjct 1 MTAISTRLVRLLNMVPYFQANPRVTRAKAAADLGVSAKQLEEDLNQLWMCGLPGYFPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDF+F GDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDP+AARSAIAKI Sbjct 61 IDFQFSGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPEAARSAIAKIED 120 Query 121 AAGAVA--------AVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AAGA+ AV E AP ES AAAAVRAAV++ AL IDYY+ASHDTLT+R+VDPI Sbjct 121 AAGALGHDTTPAATAVDEPAPAESQAAAAVRAAVQSRHALAIDYYSASHDTLTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLLIGGHSYLEAWSREAEGVRLFRFDRIV+A+EL EPA PPE A APPDTSLFDGD S Sbjct 181 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVEASELDEPAAPPEPALHAPPDTSLFDGDPS 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LP A LRVAP+ASWM EYYP+R++R+LPDGSCE MTYASEDWMTRL+LG G VRVLAP Sbjct 241 LPFAKLRVAPTASWMFEYYPMRDVRELPDGSCEAVMTYASEDWMTRLVLGLGPAVRVLAP 300 Query 293 ESL 295 ESL Sbjct 301 ESL 303 >gi|15827691|ref|NP_301954.1| DNA-binding protein [Mycobacterium leprae TN] gi|221230168|ref|YP_002503584.1| putative DNA-binding protein [Mycobacterium leprae Br4923] gi|13432264|sp|P54075.2|PAFC_MYCLE RecName: Full=Protein pafC gi|4200279|emb|CAA22940.1| hypothetical protein MLCB2533.26 [Mycobacterium leprae] gi|13093242|emb|CAC31711.1| possible DNA-binding protein [Mycobacterium leprae] gi|219933275|emb|CAR71425.1| possible DNA-binding protein [Mycobacterium leprae Br4923] Length=324 Score = 455 bits (1170), Expect = 5e-126, Method: Compositional matrix adjust. Identities = 239/322 (75%), Positives = 271/322 (85%), Gaps = 8/322 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ LSTRLVRLLNMVPYFQANPRITRAEAAA+LGV+AKQL++D NQLW+CGLPGY PGDL Sbjct 1 MTQLSTRLVRLLNMVPYFQANPRITRAEAAADLGVSAKQLDQDFNQLWVCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPL+LTSPEA GLLVALRALA+IPGVVDP+A RSAIAKI A Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLQLTSPEAIGLLVALRALANIPGVVDPEAVRSAIAKIEA 120 Query 121 AA--------GAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AA G+VA+V + +ES A AAVRAAVR+ +AL IDYY+ASHDTLT+RIVDPI Sbjct 121 AAVVMGNEATGSVASVDTRPFSESHAVAAVRAAVRDKQALVIDYYSASHDTLTSRIVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLL+G HSYLEAWSREAEGVRLFRFDRIV A EL EPA PE+ R+A PDTS FD D Sbjct 181 RVLLVGDHSYLEAWSREAEGVRLFRFDRIVVARELDEPAAAPETVRKALPDTSFFDDDPL 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSATL VA S SW+ EYYP+R+ +LPDGS + MTYAS+ WMTRL+LGFGS V+V AP Sbjct 241 LPSATLWVARSVSWIFEYYPMRQAHELPDGSFQAVMTYASDAWMTRLVLGFGSAVQVQAP 300 Query 293 ESLAQRVRDAATAALDAYQAAA 314 E+LA RVR+AA AAL++YQ A Sbjct 301 EALAYRVRNAAVAALESYQVTA 322 >gi|108799440|ref|YP_639637.1| transcriptional regulator-like protein [Mycobacterium sp. MCS] gi|119868553|ref|YP_938505.1| transcriptional regulator-like protein [Mycobacterium sp. KMS] gi|108769859|gb|ABG08581.1| transcriptional regulator-like protein [Mycobacterium sp. MCS] gi|119694642|gb|ABL91715.1| transcriptional regulator-like protein [Mycobacterium sp. KMS] Length=325 Score = 439 bits (1129), Expect = 3e-121, Method: Compositional matrix adjust. Identities = 234/319 (74%), Positives = 266/319 (84%), Gaps = 8/319 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSA+S+RLVRLLNMVPYFQANPRIT AEAAA+LGVT KQL++DLNQLWMCGLPGY PGDL Sbjct 1 MSAISSRLVRLLNMVPYFQANPRITYAEAAADLGVTVKQLQDDLNQLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGID PL+LTSPEATG+LVALRAL D+PG+VDP+AARSAIAKI Sbjct 61 IDFEFSGDTIEVTFSAGIDHPLRLTSPEATGVLVALRALVDVPGMVDPEAARSAIAKIEQ 120 Query 121 AAGA--------VAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AAGA V AV E AP ES AAAAVR AVRN+ AL I+YY+ASHD LT+R+VDPI Sbjct 121 AAGAAGHDLGDAVTAVDEPAPMESEAAAAVRTAVRNAHALQIEYYSASHDMLTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLL+ H+YLEAW R AEGVRLFRFDRIVDA L EPA PP A +A PDTSLFD D + Sbjct 181 RVLLVADHTYLEAWCRSAEGVRLFRFDRIVDARVLNEPAAPPPPAVEAGPDTSLFDADPA 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSATL + SASWM +YYP+R +R+LPDG+CE AMTYAS+DWM R +LGFGS VRVL P Sbjct 241 LPSATLLIDRSASWMFDYYPLRVVRELPDGACEAAMTYASDDWMARFVLGFGSAVRVLEP 300 Query 293 ESLAQRVRDAATAALDAYQ 311 + LA +VR++A AAL AY+ Sbjct 301 QELAAKVRESAAAALLAYE 319 >gi|126435094|ref|YP_001070785.1| transcriptional regulator-like protein [Mycobacterium sp. JLS] gi|126234894|gb|ABN98294.1| transcriptional regulator-like protein [Mycobacterium sp. JLS] Length=325 Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 233/319 (74%), Positives = 265/319 (84%), Gaps = 8/319 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSA+S+RLVRLLNMVPYFQANPRIT AEAAA+LGVT KQL++DLNQLWMCGLPGY PGDL Sbjct 1 MSAISSRLVRLLNMVPYFQANPRITYAEAAADLGVTVKQLQDDLNQLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGID PL+LTSPEATG+LVALRAL D+PG+VDP+AARSAIAKI Sbjct 61 IDFEFSGDTIEVTFSAGIDHPLRLTSPEATGVLVALRALVDVPGMVDPEAARSAIAKIEQ 120 Query 121 AAGA--------VAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AAGA V AV E AP ES AAAAVR AVRN+ AL I+YY+ASHD LT+R+VDPI Sbjct 121 AAGAAGHDLGDSVTAVDEPAPMESDAAAAVRTAVRNAHALQIEYYSASHDMLTSRVVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS 232 RVLL+ H+YLEAW R AEGVRLFRFDRIVDA L EPA PP A +A PDTSLFD D + Sbjct 181 RVLLVADHTYLEAWCRSAEGVRLFRFDRIVDARVLNEPAAPPPPAVEAGPDTSLFDADPA 240 Query 233 LPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 LPSATL + SASWM +YYP+R +R+L DG+CE AMTYAS+DWM R +LGFGS VRVL P Sbjct 241 LPSATLLIDRSASWMFDYYPLRVVRELADGACEAAMTYASDDWMARFVLGFGSAVRVLEP 300 Query 293 ESLAQRVRDAATAALDAYQ 311 + LA +VR++A AAL AY+ Sbjct 301 QELAAKVRESAAAALLAYE 319 >gi|120404415|ref|YP_954244.1| transcriptional regulator-like protein [Mycobacterium vanbaalenii PYR-1] gi|119957233|gb|ABM14238.1| transcriptional regulator-like protein [Mycobacterium vanbaalenii PYR-1] Length=331 Score = 434 bits (1115), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 230/320 (72%), Positives = 260/320 (82%), Gaps = 9/320 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+A+S RLVRLLNMVPYFQANPRIT AEAA++LGV+ KQL EDLNQLWMCGLPGY PGDL Sbjct 1 MTAVSARLVRLLNMVPYFQANPRITYAEAASDLGVSVKQLREDLNQLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGID PL+LTSPEATG+LVALRAL D+PG+VDP+AARSAIAKI + Sbjct 61 IDFEFSGDTIEVTFSAGIDHPLRLTSPEATGVLVALRALVDVPGMVDPEAARSAIAKIES 120 Query 121 AAGAV------AAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 AAG V AAV E AP ES AAAAVR AVR+ RAL I+YYAASHDT+++R+VDPIRV Sbjct 121 AAGKVGHGVEGAAVEEPAPVESAAAAAVRKAVRDDRALAIEYYAASHDTMSSRVVDPIRV 180 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFD---GDL 231 +L+ HSYLEAW R AE VRLFRFDRIVDA L EP+VPP A QA PDTSLFD D Sbjct 181 VLVADHSYLEAWCRSAEAVRLFRFDRIVDARVLDEPSVPPPPAVQAGPDTSLFDPDTADP 240 Query 232 SLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLA 291 SLP ATL + SA+WM +YYP+R LR+ DGSCE MTYAS+ WM R +LGFGS VRVL Sbjct 241 SLPVATLLIERSAAWMFDYYPLRVLREFDDGSCEATMTYASDQWMARFVLGFGSAVRVLE 300 Query 292 PESLAQRVRDAATAALDAYQ 311 P LA RVR +A AAL+AY+ Sbjct 301 PVDLADRVRRSAAAALEAYR 320 >gi|118472326|ref|YP_888179.1| hypothetical protein MSMEG_3888 [Mycobacterium smegmatis str. MC2 155] gi|118173613|gb|ABK74509.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=318 Score = 422 bits (1084), Expect = 4e-116, Method: Compositional matrix adjust. Identities = 213/304 (71%), Positives = 249/304 (82%), Gaps = 4/304 (1%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS +STRLVRLLNMVPYFQANP++TRAEAAA LGVT KQL+ DL+QLWMCGLPGYSPGDL Sbjct 1 MSQVSTRLVRLLNMVPYFQANPKVTRAEAAAALGVTGKQLDADLDQLWMCGLPGYSPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDF+F GDTIEVTFSAG+D PL+LTS EATG+LVALRAL D+PG+VDP+AARSAIAKI + Sbjct 61 IDFDFVGDTIEVTFSAGVDHPLRLTSTEATGILVALRALVDVPGMVDPEAARSAIAKIES 120 Query 121 AAGA----VAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLL 176 A G+ V + E E AAA VR AVR +RALT++YY+AS D+L TR VDPIRV+L Sbjct 121 AVGSQRAVVEGITEDTSAEPGAAATVRTAVRENRALTLEYYSASRDSLATRTVDPIRVVL 180 Query 177 IGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSA 236 +G +SYLEAW R AE VRLFRFDRIVDA L +PA PP A A PDTSLFD D SLPSA Sbjct 181 VGDNSYLEAWCRSAEAVRLFRFDRIVDAQLLDDPAAPPPPAVAAGPDTSLFDADPSLPSA 240 Query 237 TLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLA 296 TL + +A+WM +YYP+R++ + PDGSCE MTYASEDWM R +LGFG++V+VLAPESLA Sbjct 241 TLLIGAAAAWMFDYYPLRDITERPDGSCEATMTYASEDWMARFILGFGAEVQVLAPESLA 300 Query 297 QRVR 300 RVR Sbjct 301 TRVR 304 >gi|145223679|ref|YP_001134357.1| transcriptional regulator-like protein [Mycobacterium gilvum PYR-GCK] gi|315444006|ref|YP_004076885.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|145216165|gb|ABP45569.1| transcriptional regulator-like protein [Mycobacterium gilvum PYR-GCK] gi|315262309|gb|ADT99050.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length=328 Score = 414 bits (1064), Expect = 1e-113, Method: Compositional matrix adjust. Identities = 226/320 (71%), Positives = 256/320 (80%), Gaps = 9/320 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+A+S RLVRLLNMVPYFQANPRIT EAA +LGV+ KQL EDLNQLWMCGLPGY PGDL Sbjct 1 MTAISARLVRLLNMVPYFQANPRITYTEAAEDLGVSVKQLREDLNQLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGID PL+LTSPEATG+LVALR+L D+PG+VDP+AARSAIAKI + Sbjct 61 IDFEFSGDTIEVTFSAGIDHPLRLTSPEATGVLVALRSLVDVPGMVDPEAARSAIAKIES 120 Query 121 AAGAV------AAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 AAG V AAV E AP ES AAAAVR AVR+ RAL I+YY+ASHD L++R+VDPIRV Sbjct 121 AAGTVGHGVEGAAVEEPAPLESEAAAAVRTAVRDDRALAIEYYSASHDMLSSRVVDPIRV 180 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFD---GDL 231 +L+ HSYLEAW R AE VRLFRFDRIVDA L EPAVPP A Q+ PDTSLFD D Sbjct 181 VLVADHSYLEAWCRTAEAVRLFRFDRIVDARVLDEPAVPPPPAVQSGPDTSLFDPDTADP 240 Query 232 SLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLA 291 SLP+ATL + SA+WM +YYP+R + PDGSCE MTYAS+ WMTR +LGFG+ VRVL Sbjct 241 SLPTATLLIDRSAAWMFDYYPLRVRTEFPDGSCEATMTYASDQWMTRFVLGFGAAVRVLE 300 Query 292 PESLAQRVRDAATAALDAYQ 311 P LA RVR A AAL AY+ Sbjct 301 PPDLADRVRQTAAAALQAYR 320 >gi|169629272|ref|YP_001702921.1| hypothetical protein MAB_2186 [Mycobacterium abscessus ATCC 19977] gi|169241239|emb|CAM62267.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=318 Score = 384 bits (986), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 209/305 (69%), Positives = 238/305 (79%), Gaps = 5/305 (1%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ LS RL RLLNMVPYFQANP I+ AEAAA+LGVT KQL DLNQLWMCGLPGY PGDL Sbjct 1 MTELSNRLTRLLNMVPYFQANPGISAAEAAADLGVTTKQLMADLNQLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F ++IEVTFSAGIDRPL+LTSPEAT LLVALRAL D+PG VDP+AARSAIAKI Sbjct 61 IDLSFSEESIEVTFSAGIDRPLRLTSPEATALLVALRALLDMPGTVDPEAARSAIAKIEE 120 Query 121 AAGAVAAVAEQAP----TESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLL 176 A GA+ A AP TES A AVR+AVRN +AL I+YY+AS DTL+ RIVDPIR+ + Sbjct 121 AVGALPTDAAPAPLSARTESEAVTAVRSAVRNRQALRIEYYSASRDTLSERIVDPIRIAV 180 Query 177 IGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSA 236 +G HSYLEAW R +EGVRLFRFDRI A L + A PP A Q DT LF+ D SLP+A Sbjct 181 VGDHSYLEAWCRGSEGVRLFRFDRIEQAEVLDQRAAPPAPAVQTATDTGLFEADPSLPAA 240 Query 237 TLRVAPSASWMLEYYPIREL-RQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESL 295 T+ V PSASW+ +Y+P+R Q PDGS E AMTYASEDWM RL+LGFGS +RVLAPESL Sbjct 241 TVIVGPSASWVFDYFPMRPTGTQHPDGSLEAAMTYASEDWMARLILGFGSAIRVLAPESL 300 Query 296 AQRVR 300 A+RVR Sbjct 301 ARRVR 305 >gi|333990758|ref|YP_004523372.1| hypothetical protein JDM601_2118 [Mycobacterium sp. JDM601] gi|333486726|gb|AEF36118.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=316 Score = 379 bits (974), Expect = 2e-103, Method: Compositional matrix adjust. Identities = 200/311 (65%), Positives = 238/311 (77%), Gaps = 1/311 (0%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS LS RLVRLLNMVPY QA P IT+ +AAAELGV+ QL+ DL+QL MCG+PGY PG+L Sbjct 1 MSQLSKRLVRLLNMVPYLQARPGITKKQAAAELGVSLAQLQADLHQLVMCGMPGYGPGEL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F D ++V +AG+DRPL+LTSPEAT +L+ALRAL D+PG+VDP+AARSAIAKI Sbjct 61 IDVTFYDDRLDVHETAGVDRPLRLTSPEATAMLMALRALVDMPGIVDPRAARSAIAKIEN 120 Query 121 AAGAVAAVAEQAPTES-PAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGG 179 AAG A A A E P AA VR V RA++IDYYAAS DT + R+VDPIRV+LI Sbjct 121 AAGEAAHRATDAADEDDPVAAVVRDGVHRRRAISIDYYAASRDTSSRRVVDPIRVVLIAN 180 Query 180 HSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLR 239 HSYLEAW R++ GVRLFRFDRI DA L EPA PPE ARQA DTSLFD D SLP AT+R Sbjct 181 HSYLEAWCRDSAGVRLFRFDRIDDAELLDEPAAPPEPARQAETDTSLFDADPSLPVATVR 240 Query 240 VAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRV 299 VAP+A+WM EYYP+R + DG E MTYAS++W+TRLLLG G +V+++APES+ RV Sbjct 241 VAPAAAWMFEYYPMRLVGDSADGWREAEMTYASDEWLTRLLLGMGDEVQIVAPESVVDRV 300 Query 300 RDAATAALDAY 310 R+AA AAL AY Sbjct 301 REAAAAALAAY 311 >gi|325676823|ref|ZP_08156496.1| transcriptional regulator family protein [Rhodococcus equi ATCC 33707] gi|325552371|gb|EGD22060.1| transcriptional regulator family protein [Rhodococcus equi ATCC 33707] Length=327 Score = 338 bits (867), Expect = 7e-91, Method: Compositional matrix adjust. Identities = 179/324 (56%), Positives = 224/324 (70%), Gaps = 12/324 (3%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+A +RL RLLNMVPYF ANP I++ AA +LG++ L +DL QL++CGLPGY PGDL Sbjct 1 MTAGLSRLARLLNMVPYFIANPGISKEAAARDLGLSVANLTKDLQQLFVCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F GDT+ V FSAGIDRPL+LTS EAT LL+ALR+LA++PG+VDP AA+SAIAKI + Sbjct 61 IDLSFEGDTVSVIFSAGIDRPLRLTSTEATVLLIALRSLAEMPGMVDPSAAQSAIAKIES 120 Query 121 AAGAVA----------AV--AEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRI 168 AAG+ A AV ++A E+P AA VR A+++ RAL + YY+AS D LT R+ Sbjct 121 AAGSAARREGAGSDDPAVEDGDRATRENPVAATVRDALQHDRALRLTYYSASRDALTERV 180 Query 169 VDPIRVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFD 228 VDPIR LL+ H+YL+ W R+AEGVRLFRFDRI A EL EP+ PP A LF Sbjct 181 VDPIRSLLLDDHTYLQGWCRQAEGVRLFRFDRIDAAVELDEPSQPPAQALGTDEHLELFS 240 Query 229 GDLSLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVR 288 D LP A L+V+ W+LE YP+ +R LPD S E M Y S++WM RL+LGFGS R Sbjct 241 PDGDLPQAVLQVSADHGWILENYPLDPVRTLPDRSVEATMRYGSQEWMARLVLGFGSGAR 300 Query 289 VLAPESLAQRVRDAATAALDAYQA 312 V+ P L + VR A AAL+AY A Sbjct 301 VVGPPELVEAVRQRARAALEAYDA 324 >gi|312139727|ref|YP_004007063.1| transcriptional regulator [Rhodococcus equi 103S] gi|311889066|emb|CBH48379.1| putative transcriptional regulator [Rhodococcus equi 103S] Length=327 Score = 337 bits (864), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 178/324 (55%), Positives = 223/324 (69%), Gaps = 12/324 (3%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+A +RL RLLNMVPYF ANP I++ AA +LG++ L +DL QL++CGLPGY PGDL Sbjct 1 MTAGLSRLARLLNMVPYFIANPGISKEAAARDLGLSVANLTKDLQQLFVCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F GDT+ V FSAGIDRPL+LTS EAT LL+ALR+LA++PG+VDP AA+SAIAKI + Sbjct 61 IDLSFEGDTVSVIFSAGIDRPLRLTSTEATVLLIALRSLAEMPGMVDPSAAQSAIAKIES 120 Query 121 AAGAVA----------AV--AEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRI 168 AAG+ A AV ++A E+P AA VR A+++ RAL + YY+AS D LT R+ Sbjct 121 AAGSAARREGAGSDDPAVEDGDRATRENPVAATVRDALQHDRALRLTYYSASRDALTERV 180 Query 169 VDPIRVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFD 228 VDPIR LL+ H+YL+ W R+AEGVRLFRFDRI A EL EP+ PP A LF Sbjct 181 VDPIRSLLLDDHTYLQGWCRQAEGVRLFRFDRIDAAVELDEPSQPPAQALGTDEHLELFS 240 Query 229 GDLSLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVR 288 D LP A L+V+ W+LE YP+ +R LPD S E M Y S++WM RL+LGFGS R Sbjct 241 PDGDLPQAVLQVSADHGWILENYPLDPVRTLPDRSVEATMRYGSQEWMARLVLGFGSGAR 300 Query 289 VLAPESLAQRVRDAATAALDAYQA 312 V+ P L + VR A AL+AY A Sbjct 301 VVGPPELVEAVRQRARGALEAYDA 324 >gi|467014|gb|AAA17199.1| B2126_C2_220 [Mycobacterium leprae] Length=247 Score = 336 bits (861), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 178/227 (79%), Positives = 197/227 (87%), Gaps = 8/227 (3%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+ LSTRLVRLLNMVPYFQANPRITRAEAAA+LGV+AKQL++D NQLW+CGLPGY PGDL Sbjct 1 MTQLSTRLVRLLNMVPYFQANPRITRAEAAADLGVSAKQLDQDFNQLWVCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 IDFEF GDTIEVTFSAGIDRPL+LTSPEA GLLVALRALA+IPGVVDP+A RSAIAKI A Sbjct 61 IDFEFSGDTIEVTFSAGIDRPLQLTSPEAIGLLVALRALANIPGVVDPEAVRSAIAKIEA 120 Query 121 AA--------GAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPI 172 AA G+VA+V + +ES A AAVRAAVRN +AL IDYY+ASHDTLT+RIVDPI Sbjct 121 AAVVMGNEATGSVASVDTRPFSESHAVAAVRAAVRNKQALVIDYYSASHDTLTSRIVDPI 180 Query 173 RVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQ 219 RVLL+G HSYLEAWSREAEGVRLFRFDRIV A EL EPA PE+ R+ Sbjct 181 RVLLVGDHSYLEAWSREAEGVRLFRFDRIVVARELDEPAAAPETVRR 227 >gi|226306656|ref|YP_002766616.1| proteasome accessory factor C [Rhodococcus erythropolis PR4] gi|226185773|dbj|BAH33877.1| proteasome accessory factor C [Rhodococcus erythropolis PR4] Length=325 Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust. Identities = 177/316 (57%), Positives = 220/316 (70%), Gaps = 9/316 (2%) Query 4 LSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDF 63 LS+RL RLLN+VPYF ANP I+ AEAA ELGV+ QL DLNQLW+CGLPGY PGDLID Sbjct 5 LSSRLARLLNLVPYFIANPGISPAEAAEELGVSTTQLMTDLNQLWVCGLPGYGPGDLIDL 64 Query 64 EFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI----- 118 F ++IEVTFSAGIDRPL+LTS EAT LL+ALR+L ++PG+VDP +A+ AIAKI Sbjct 65 SFSEESIEVTFSAGIDRPLRLTSTEATALLIALRSLVEMPGMVDPSSAQRAIAKIEDAAG 124 Query 119 AAAAGAVAAVAEQAPT----ESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 +AAA A+ + +P E P AA VRAA+ + AL + YY+AS D ++ RIVDP+R+ Sbjct 125 SAAARAIGQDRDTSPAPDIAEDPIAATVRAALADKTALRLTYYSASRDAVSERIVDPVRI 184 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLP 234 +L+ +SYL+AW R+AEGVRLFRFDRI A +L EPA PP A + + LF GD SLP Sbjct 185 VLVDNYSYLQAWCRQAEGVRLFRFDRIDAAVQLDEPADPPPQALEEDSNLELFSGDGSLP 244 Query 235 SATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPES 294 A L + WML+YYP+ DGS E M++ + +WM RL+LGFG VRVL P Sbjct 245 EARLFITKEWVWMLDYYPMDVEHVNGDGSVEATMSFGTLEWMARLVLGFGEGVRVLHPPE 304 Query 295 LAQRVRDAATAALDAY 310 L V D A AALDAY Sbjct 305 LVSEVHDRAVAALDAY 320 >gi|229493685|ref|ZP_04387470.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319646|gb|EEN85482.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=325 Score = 332 bits (852), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 177/316 (57%), Positives = 220/316 (70%), Gaps = 9/316 (2%) Query 4 LSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDF 63 LS+RL RLLN+VPYF ANP I+ AEAA ELGV+ QL DLNQLW+CGLPGY PGDLID Sbjct 5 LSSRLARLLNLVPYFIANPGISPAEAAEELGVSTTQLMTDLNQLWVCGLPGYGPGDLIDL 64 Query 64 EFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI----- 118 F ++IEVTFSAGIDRPL+LTS EAT LL+ALR+L ++PG+VDP +A+ AIAKI Sbjct 65 SFSEESIEVTFSAGIDRPLRLTSTEATALLIALRSLVEMPGMVDPSSAQRAIAKIEDAAG 124 Query 119 AAAAGAVAAVAEQAPT----ESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 +AAA A+ + +P E P AA VRAA+ + AL + YY+AS D ++ RIVDP+R+ Sbjct 125 SAAARAIGQDRDTSPAPDIAEDPIAATVRAALADKTALRLTYYSASRDAVSERIVDPVRI 184 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLP 234 +L+ +SYL+AW R+AEGVRLFRFDRI A +L EPA PP A + + LF GD SLP Sbjct 185 VLVDNYSYLQAWCRQAEGVRLFRFDRIDAAVQLDEPADPPPQALEEDSNLELFSGDGSLP 244 Query 235 SATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPES 294 A L + WML+YYP+ DGS E M++ + +WM RL+LGFG VRVL P Sbjct 245 EARLFITKEWVWMLDYYPLDVEHVNDDGSVEATMSFGTLEWMARLVLGFGDGVRVLHPPE 304 Query 295 LAQRVRDAATAALDAY 310 L V D A AALDAY Sbjct 305 LVSEVHDRAVAALDAY 320 >gi|333919682|ref|YP_004493263.1| hypothetical protein AS9A_2014 [Amycolicicoccus subflavus DQS3-9A1] gi|333481903|gb|AEF40463.1| hypothetical protein AS9A_2014 [Amycolicicoccus subflavus DQS3-9A1] Length=325 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 181/310 (59%), Positives = 216/310 (70%), Gaps = 6/310 (1%) Query 2 SALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLI 61 S +S RLVRLLN+VPY ANP I++AE A+E GV + L DLN LW+CGLPGY PGDLI Sbjct 4 SRVSARLVRLLNLVPYLLANPGISKAELASEFGVNQRDLMRDLNLLWLCGLPGYGPGDLI 63 Query 62 DFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAA 121 D F T+ VTFSAG++RPL+LTSPEAT LLV LRAL D PG+VDP AA+SAIAKI AA Sbjct 64 DLSFEDSTVSVTFSAGMERPLRLTSPEATALLVGLRALLDQPGMVDPAAAQSAIAKIEAA 123 Query 122 AGAVAA----VAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLI 177 AG + A+ A +S AAAA R AV + RAL + YY+AS D LT R+VDPIR LL+ Sbjct 124 AGVASKERDEAAKPAVGDSDAAAAAREAVLDGRALRLRYYSASRDALTERVVDPIRTLLV 183 Query 178 GGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSAT 237 SYL+AW R AEGVRLFRFDRI DA L EPAV PE AR T LF D +LP AT Sbjct 184 DDQSYLQAWCRMAEGVRLFRFDRIDDATVLDEPAVVPEGAR-GEIGTGLFSDDATLPVAT 242 Query 238 LRVAPSASWMLEYYPIRELRQ-LPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLA 296 LR+AP A+W L+YYP+ + DG +M +AS DWM RLL+GFGS V V++P L Sbjct 243 LRIAPEAAWFLDYYPVEHTGEPDSDGWITGSMRFASSDWMARLLVGFGSHVAVVSPPELV 302 Query 297 QRVRDAATAA 306 +RV+ A A Sbjct 303 ERVQQRAEAG 312 >gi|1666183|emb|CAB04764.1| ORF11(1) [Rhodococcus erythropolis] Length=326 Score = 322 bits (824), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 172/308 (56%), Positives = 207/308 (68%), Gaps = 10/308 (3%) Query 15 VPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEFCGDTIEVTF 74 VPYF ANP ++ AEAAAELGVT QL DLNQLW+CGLPGY PGDLID F ++IEVTF Sbjct 16 VPYFIANPGMSAAEAAAELGVTTTQLMSDLNQLWVCGLPGYGPGDLIDLSFSEESIEVTF 75 Query 75 SAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGAVAAV------ 128 SAGIDRPL+LTS EAT LL+ALR+L ++PG+VDP AA SAIAKI AAG AA Sbjct 76 SAGIDRPLRLTSTEATALLIALRSLVEMPGMVDPSAAHSAIAKIEDAAGTAAARAAVTPA 135 Query 129 ----AEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLE 184 A + E P AA VR+A+ RAL + YY+AS D +T R VDP+R++L+ HSYL+ Sbjct 136 SERDAVEDVAEDPIAATVRSALHRRRALNLTYYSASRDRVTERTVDPVRIVLVDNHSYLQ 195 Query 185 AWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSA 244 AW R+AEGVRLFR DRI A EL EP+ PP A + LF GD SLP A L + Sbjct 196 AWCRQAEGVRLFRLDRIDAATELDEPSTPPAQALVRDSNLELFSGDASLPQARLDIGADC 255 Query 245 SWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVRDAAT 304 W+L+YYP+ DGS E M+Y + +WM RL+LGFGS +RVL P L VR A Sbjct 256 VWVLDYYPMDVATVAADGSVEATMSYGALEWMARLVLGFGSGIRVLEPPELVDEVRHRAV 315 Query 305 AALDAYQA 312 AL AY+A Sbjct 316 DALSAYEA 323 >gi|226359991|ref|YP_002777769.1| proteasome accessory factor C [Rhodococcus opacus B4] gi|226238476|dbj|BAH48824.1| proteasome accessory factor C [Rhodococcus opacus B4] Length=326 Score = 321 bits (822), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 172/308 (56%), Positives = 208/308 (68%), Gaps = 10/308 (3%) Query 15 VPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEFCGDTIEVTF 74 VPYF ANP ++ AEAAAELGVT QL DLNQLW+CGLPGY PGDLID F ++IEVTF Sbjct 16 VPYFIANPGMSAAEAAAELGVTTTQLMSDLNQLWVCGLPGYGPGDLIDLSFSEESIEVTF 75 Query 75 SAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI------AAAAGAVAAV 128 SAGIDRPL+LTS EAT LL+ALR+L ++PG+VDP AA SAIAKI AAA AV Sbjct 76 SAGIDRPLRLTSTEATALLIALRSLVEMPGMVDPSAAHSAIAKIEDAAGTAAARAAVTPA 135 Query 129 AEQAPTES----PAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLE 184 +E+A E P AAAVR+A+ RAL + YY+AS D +T R VDP+R++L+ HSYL+ Sbjct 136 SERAAVEDVAEDPVAAAVRSALHRRRALHLTYYSASRDRVTERTVDPVRIVLVDNHSYLQ 195 Query 185 AWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSA 244 AW R+AEGVRLFR DRI A EL E + PP A + LF GD SLP A L + Sbjct 196 AWCRQAEGVRLFRLDRIDAATELDEASTPPAQALVRDSNLELFSGDASLPQARLHIGADC 255 Query 245 SWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVRDAAT 304 W+L+YYP+ DGS E M+Y + +WM RL+LGFGS + VL P L VR A Sbjct 256 VWVLDYYPMDVATVAADGSVEATMSYGALEWMARLVLGFGSGITVLGPPELVHEVRRRAV 315 Query 305 AALDAYQA 312 AL AY+A Sbjct 316 EALSAYEA 323 >gi|54025135|ref|YP_119377.1| hypothetical protein nfa31660 [Nocardia farcinica IFM 10152] gi|54016643|dbj|BAD58013.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=326 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 180/318 (57%), Positives = 224/318 (71%), Gaps = 7/318 (2%) Query 2 SALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLI 61 S LS RL RLLNM+PYF ANP I+ AEAAA+LGV+ KQL DLNQLWMCGLPGY PGDLI Sbjct 4 SRLSVRLSRLLNMIPYFIANPGISAAEAAADLGVSTKQLMSDLNQLWMCGLPGYGPGDLI 63 Query 62 DFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAA 121 D F ++IEVTFSAGIDRPL+LTS EAT LLVALR++ ++PG+VDP AA +AIAKI +A Sbjct 64 DLSFSEESIEVTFSAGIDRPLRLTSTEATALLVALRSIVEMPGMVDPTAAHAAIAKIESA 123 Query 122 ----AGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLI 177 A A A AP E+PA VR+A+ + AL + YY+AS D ++ R+VDPIR+LL+ Sbjct 124 IAGGAPDAAPAAPSAPVEAPAVTTVRSALARAHALRLVYYSASRDEVSERVVDPIRILLV 183 Query 178 GGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPP-ESARQAPPDTSLFDGDLSLPSA 236 +SYL+AW R+AE VRLFRFDRI A EL EPA PP + + +A D LF D ++P A Sbjct 184 DDNSYLQAWCRDAEAVRLFRFDRIEAATELDEPARPPRDVSTEAALD--LFQDDPAVPLA 241 Query 237 TLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLA 296 L + W+L+ YP+ ++ PDG E M +A+ DWM RLLLGFGS VRVL P L Sbjct 242 RLLIRADHGWLLDQYPMHKVAARPDGGIEATMRFATLDWMARLLLGFGSGVRVLGPPELV 301 Query 297 QRVRDAATAALDAYQAAA 314 VR+ + AAL AY+ A Sbjct 302 AAVRERSEAALAAYRDAG 319 >gi|111017858|ref|YP_700830.1| hypothetical protein RHA1_ro00839 [Rhodococcus jostii RHA1] gi|110817388|gb|ABG92672.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=326 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 170/308 (56%), Positives = 205/308 (67%), Gaps = 10/308 (3%) Query 15 VPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEFCGDTIEVTF 74 VPYF ANP ++ AEAAAELGVT QL DLNQLW+CGLPGY PGDLID F ++IEVTF Sbjct 16 VPYFIANPGMSAAEAAAELGVTTTQLMSDLNQLWVCGLPGYGPGDLIDLSFSEESIEVTF 75 Query 75 SAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGAVAAV------ 128 SAGIDRPL+LTS EAT LL+ALR+L ++PG+VDP AA SAIAKI AAG AA Sbjct 76 SAGIDRPLRLTSTEATALLIALRSLVEMPGMVDPSAAHSAIAKIEDAAGTAAARAAVTPA 135 Query 129 ----AEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLE 184 A + E P AA VR+A+ + AL + YY+AS D +T R VDP+RV+L+ SYL+ Sbjct 136 SEREAVEDVAEDPIAATVRSALHHRHALHLTYYSASRDRVTERTVDPVRVVLVDNQSYLQ 195 Query 185 AWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSA 244 AW R+AEGVRLFR DRI A EL E + PP A + LF GD SLP A L + Sbjct 196 AWCRQAEGVRLFRLDRIDAATELDEASTPPAQALVRDSNLELFSGDASLPQARLHIGADC 255 Query 245 SWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVRDAAT 304 W+L+YYP+ DGS E +M+Y + +WM RL+LGFGS +RVL P L VR A Sbjct 256 VWVLDYYPMDVRTVDADGSVEASMSYGALEWMARLVLGFGSGIRVLEPAELVDEVRRRAV 315 Query 305 AALDAYQA 312 AL AY A Sbjct 316 EALSAYDA 323 >gi|256376376|ref|YP_003100036.1| transcriptional regulator protein [Actinosynnema mirum DSM 43827] gi|255920679|gb|ACU36190.1| putative transcriptional regulator protein [Actinosynnema mirum DSM 43827] Length=321 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 163/318 (52%), Positives = 194/318 (62%), Gaps = 13/318 (4%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M++ + RL RLL +VPY A P I EAAA+ VT KQL +DL LWMCGLPGY PGDL Sbjct 1 MTSANDRLPRLLALVPYLLARPGIPIVEAAADFQVTPKQLRKDLELLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F G+T+ VTF AG+ RPL+LT+ EAT LLVALRALAD PGV D A A+AK+ + Sbjct 61 IDLSFEGETVTVTFDAGMSRPLRLTAAEATSLLVALRALADTPGVADKAAVERAVAKVES 120 Query 121 AAG-------AVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIR 173 A G AV + P + A+ VR RAL + YY S D +T R+VDP+R Sbjct 121 AVGQAQPSGVAVGLAVREGPETARVRDAIAEGVRARRALALRYYTPSRDEITDRVVDPMR 180 Query 174 VLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAE-LGEPAVPPESARQAPPDTS--LFDGD 230 +LL+ G SYLEAW R A+GVRLFR DR VDA E L EPA PP A P DTS LF D Sbjct 181 MLLVEGRSYLEAWCRAADGVRLFRIDR-VDAVEVLDEPASPPPHA--VPTDTSEGLFQPD 237 Query 231 LSLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVL 290 +A L + P A W EYYP + +LPDG V M Y WM RL+LG G +VR Sbjct 238 PDQRAAVLVLEPDARWFAEYYPTEAMVELPDGRARVLMRYTDTAWMVRLVLGQGGEVRAE 297 Query 291 APESLAQRVRDAATAALD 308 P L + V A AALD Sbjct 298 EPAELVEAVARQARAALD 315 >gi|343927933|ref|ZP_08767399.1| proteasome accessory factor C [Gordonia alkanivorans NBRC 16433] gi|343762156|dbj|GAA14325.1| proteasome accessory factor C [Gordonia alkanivorans NBRC 16433] Length=322 Score = 277 bits (709), Expect = 1e-72, Method: Compositional matrix adjust. Identities = 152/296 (52%), Positives = 190/296 (65%), Gaps = 12/296 (4%) Query 6 TRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEF 65 +RL RLL MVPYFQA I+ +AA ELGVT QL +DL L++CGLPGY P DLI+ EF Sbjct 7 SRLNRLLAMVPYFQARRGISIEQAARELGVTQTQLTKDLELLFVCGLPGYYPDDLIELEF 66 Query 66 CGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGAV 125 + V F+AG+DRPL+LT+ EA+ LLVALRAL + PGVVD AAR AIAKI A GA Sbjct 67 SEGFVSVGFTAGMDRPLRLTTVEASTLLVALRALVETPGVVDVTAARRAIAKIEEAVGAT 126 Query 126 A-------AVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIG 178 A A E +P E+P VR AVR RAL + YY+AS D++T R+VDPIR+ ++ Sbjct 127 AVPGLSSGAEFEASPGENPTFTTVREAVRRGRALQLSYYSASRDSVTDRVVDPIRLQVMD 186 Query 179 GHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATL 238 H+YLEAW R AEGVRLFRFDRI A EL EP+ PP A + + L + LP+ L Sbjct 187 QHTYLEAWCRMAEGVRLFRFDRIDTAVELDEPSNPPAEAEWS-SQSVLVPENPDLPAVEL 245 Query 239 RVAPSASWMLEYYPIRELRQL----PDGSCEVAMTYASEDWMTRLLLGFGSDVRVL 290 + P W+L+YYP+ + PD M Y S +W+TR LLGFG VRV+ Sbjct 246 EIDPDHLWILDYYPVEPTTSIDDRHPDEPVRARMVYGSPEWLTRFLLGFGGSVRVV 301 >gi|330468509|ref|YP_004406252.1| hypothetical protein VAB18032_22760 [Verrucosispora maris AB-18-032] gi|328811480|gb|AEB45652.1| hypothetical protein VAB18032_22760 [Verrucosispora maris AB-18-032] Length=334 Score = 275 bits (704), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 153/307 (50%), Positives = 190/307 (62%), Gaps = 5/307 (1%) Query 7 RLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEFC 66 RL RLLN+VPY A P I AEAA +LGVT +QL EDL LW+CGLPGY PGDLID F Sbjct 13 RLARLLNLVPYLLARPGIEIAEAAGDLGVTERQLREDLELLWVCGLPGYGPGDLIDMAFD 72 Query 67 GDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGAVA 126 GD + +T+ AGIDRPL+LT EA L+VALR LA+ PGV + +A A+AKI A G + Sbjct 73 GDRVTITYDAGIDRPLRLTPDEALALVVALRMLAETPGVANREAVERALAKIEDAGGDLV 132 Query 127 A--VAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLE 184 A V + P ++ +RAAV RAL I YY + D T R++DP+R+L+ GG +Y+E Sbjct 133 AAPVEVRLPGDARRVEQLRAAVEGGRALRITYYTRARDETTERVIDPLRMLMAGGRAYVE 192 Query 185 AWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSA 244 AW R AE VRLFR DRI EL EPAV P AR +F LP TLR+ Sbjct 193 AWCRRAEAVRLFRADRIDAVTELNEPAVVPPQARPQDLSEGVFRPSPDLPLITLRIGRGE 252 Query 245 SWMLEYYPIRELRQLPDGS-CEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVRDAA 303 W+ EYYP + DG V++ W R +LG GS+V VLAP LA++VRD A Sbjct 253 RWITEYYPCERVES--DGERWVVSLRVTDLGWARRFVLGLGSEVTVLAPAELAEQVRDTA 310 Query 304 TAALDAY 310 AAL+AY Sbjct 311 VAALEAY 317 >gi|238064542|ref|ZP_04609251.1| hypothetical protein MCAG_05508 [Micromonospora sp. ATCC 39149] gi|237886353|gb|EEP75181.1| hypothetical protein MCAG_05508 [Micromonospora sp. ATCC 39149] Length=354 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 150/310 (49%), Positives = 189/310 (61%), Gaps = 2/310 (0%) Query 3 ALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLID 62 A + RL RLLN+VPY A P I AEAA +LGVT +QL EDL LW+CGLPGY PGDLID Sbjct 27 ASADRLARLLNLVPYLLARPGIEIAEAAGDLGVTERQLREDLELLWVCGLPGYGPGDLID 86 Query 63 FEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAA 122 F GD + +T+ AGIDRPL+LT EA L+VALR LA+ PGV + +A A+AKI AA Sbjct 87 MAFDGDRVTITYDAGIDRPLRLTPDEALALVVALRMLAETPGVANREAVERALAKIENAA 146 Query 123 GAVAA--VAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 G + V + P + +RAAV RAL I YY A+ D T R++DP+R+L++GG Sbjct 147 GGLVGTPVEVRLPADGRRVEQLRAAVERGRALRITYYTAARDETTERVIDPLRMLMVGGR 206 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 +Y+EAW R AE VRLFR DRI EL EPAV P AR +F LP TLR+ Sbjct 207 AYVEAWCRRAEEVRLFRADRIDAVVELDEPAVVPPQARPHDLTDGVFRPSPDLPLITLRI 266 Query 241 APSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRVR 300 W+ EYYP + + V++ W R +LG G V V+AP LA++VR Sbjct 267 GRGERWITEYYPCERVERGDGDQWLVSLRVTDLGWARRFVLGLGPGVAVVAPAELAEQVR 326 Query 301 DAATAALDAY 310 A AAL+AY Sbjct 327 AQAVAALEAY 336 >gi|257056200|ref|YP_003134032.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586072|gb|ACU97205.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length=326 Score = 271 bits (694), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 156/316 (50%), Positives = 187/316 (60%), Gaps = 11/316 (3%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS S RL RLL +VPY A P I E A + VT KQL +DL LWMCGLPGY PGDL Sbjct 1 MSGSSERLPRLLALVPYLLARPGIRIDEVARDFDVTPKQLRKDLELLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F GDT+ V + AG+ RPL+LT EA+ LL+ALR LA+ PGVVD A R AIAKI A Sbjct 61 IDLSFDGDTVSVIYDAGMRRPLRLTGAEASALLIALRTLAETPGVVDTDAVRRAIAKIEA 120 Query 121 AAG-------AVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIR 173 A+G V +A + V+ AVR RAL + YY AS D L+ R VDP+R Sbjct 121 ASGDVRPADVVVGHGMREAESTVETRGRVQEAVRQRRALWLRYYTASKDELSERTVDPMR 180 Query 174 VLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTS--LFDGDL 231 +L++ G SYLEAW R+AE VRLFR DRI L E A PPE+A P D S +F Sbjct 181 LLIVQGISYLEAWCRKAEAVRLFRLDRIDALTVLDERAAPPETA--IPKDLSEGVFPQRA 238 Query 232 SLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLA 291 P+A L + P A W+ EYYP EL +L G V M Y E W+ RL+L G + V Sbjct 239 EYPAAELVLEPDARWVAEYYPCEELAELEGGRLRVRMRYGDESWLIRLVLRLGGEATVER 298 Query 292 PESLAQRVRDAATAAL 307 P +AQ VR A AL Sbjct 299 PRHVAQAVRQRAAEAL 314 >gi|302867428|ref|YP_003836065.1| hypothetical protein Micau_2958 [Micromonospora aurantiaca ATCC 27029] gi|315506163|ref|YP_004085050.1| hypothetical protein ML5_5430 [Micromonospora sp. L5] gi|302570287|gb|ADL46489.1| hypothetical protein Micau_2958 [Micromonospora aurantiaca ATCC 27029] gi|315412782|gb|ADU10899.1| hypothetical protein ML5_5430 [Micromonospora sp. L5] Length=335 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 154/311 (50%), Positives = 191/311 (62%), Gaps = 5/311 (1%) Query 3 ALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLID 62 A + RL RLLN+VPY A P I AEAA +LGVT KQL EDL LW+CGLPGY PGDLID Sbjct 11 ASADRLARLLNLVPYLLARPGIEIAEAAHDLGVTEKQLREDLELLWVCGLPGYGPGDLID 70 Query 63 FEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAA 122 F GD + +T+ AGIDRPL+LT EA L+VALR +A+ PGV + +A A+AKI AA Sbjct 71 MAFDGDRVTITYDAGIDRPLRLTPDEALALVVALRMIAETPGVANREAVERALAKIENAA 130 Query 123 GAVAA--VAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 G +A V + P +S +RAAV RAL I YY + D T R +DP+R+L++GG Sbjct 131 GDLAGAPVEVRLPGDSARVRELRAAVERGRALRITYYTPARDETTERTIDPLRMLMVGGR 190 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRV 240 +Y+EAW R AEGVRLFR DRI EL E AV P AR +F LP TLR+ Sbjct 191 AYVEAWCRRAEGVRLFRADRIDAVTELPEQAVVPPQARPHDLSDGVFRPSADLPLITLRI 250 Query 241 APSASWMLEYYPIRELRQLPDG-SCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRV 299 W+ EYYP + DG V++ W R +LG G +V V+AP LA++V Sbjct 251 GRGERWITEYYPCERVEA--DGEQWLVSLRVTDLGWARRFVLGLGPEVTVVAPAELAEQV 308 Query 300 RDAATAALDAY 310 R A AALDAY Sbjct 309 RAQAVAALDAY 319 >gi|240172776|ref|ZP_04751435.1| hypothetical protein MkanA1_25912 [Mycobacterium kansasii ATCC 12478] Length=179 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 130/148 (88%), Positives = 140/148 (95%), Gaps = 0/148 (0%) Query 148 NSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAEL 207 + RALTIDYY+ASHDTLTTR VDPIRVLLIGGHSYLEAWSREAEGVRLFRFDRIV+A+EL Sbjct 11 DKRALTIDYYSASHDTLTTRTVDPIRVLLIGGHSYLEAWSREAEGVRLFRFDRIVEASEL 70 Query 208 GEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSASWMLEYYPIRELRQLPDGSCEVA 267 EPA PPE A QAPPDT+LFD D SLPSATLRVAPSASWMLEYYPIRELR+LPDGSCEVA Sbjct 71 DEPAAPPEPALQAPPDTALFDADPSLPSATLRVAPSASWMLEYYPIRELRELPDGSCEVA 130 Query 268 MTYASEDWMTRLLLGFGSDVRVLAPESL 295 MTYASE+WMTRL+LGFGSDV+VLAP+SL Sbjct 131 MTYASEEWMTRLMLGFGSDVQVLAPDSL 158 >gi|331697093|ref|YP_004333332.1| putative transcriptional regulator protein [Pseudonocardia dioxanivorans CB1190] gi|326951782|gb|AEA25479.1| putative transcriptional regulator protein [Pseudonocardia dioxanivorans CB1190] Length=322 Score = 265 bits (676), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 147/300 (49%), Positives = 185/300 (62%), Gaps = 5/300 (1%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS ++ RL RLL++VPY A P I AEAAA+ G T +QL DL LWMCGLPGY PGDL Sbjct 1 MSGIAERLPRLLSLVPYLLARPGIRIAEAAADFGTTERQLRRDLELLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 +D F GDT+ VT AG+ RPL+LT+ EAT LLVALR+L D+PG+VD A R A AKI Sbjct 61 VDLSFAGDTVTVTEDAGMRRPLRLTTAEATALLVALRSLGDVPGIVDTAAVRRATAKIEQ 120 Query 121 AAG--AVAAVA-EQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLI 177 A G +A VA + P E AAVR A+ A+ + YY A D ++ R VDP+R+LL+ Sbjct 121 AVGDAGLAGVAVDLTPEEQATTAAVRGALERGHAMRMTYYTAGRDAVSRRTVDPMRLLLV 180 Query 178 GGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSAT 237 G YLEAW R AEGVR+FR DR+ EL EPA PP A +F +A Sbjct 181 EGRGYLEAWCRRAEGVRMFRLDRVEAVEELDEPAAPPPGAEPTDVSHGVFTAREDHRTAV 240 Query 238 LRVAPSASWMLEYYPIRELRQLP--DGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESL 295 L + P A W+ EYYP+ E+ + P DG V++ YA W+ RL+LG G R+L P L Sbjct 241 LELLPEARWLAEYYPVEEVVEDPSGDGRATVSLRYADPGWLVRLVLGLGGGARILEPPEL 300 >gi|317508591|ref|ZP_07966252.1| hypothetical protein HMPREF9336_02624 [Segniliparus rugosus ATCC BAA-974] gi|316253135|gb|EFV12544.1| hypothetical protein HMPREF9336_02624 [Segniliparus rugosus ATCC BAA-974] Length=337 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 157/322 (49%), Positives = 208/322 (65%), Gaps = 15/322 (4%) Query 4 LSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDF 63 L+TRL R+L+++PYF+A+P +AA LG++ L DLNQLW+CGLPGYSPGDLID Sbjct 6 LATRLTRMLSIIPYFRAHPGQNVRDAAKALGMSVADLHRDLNQLWLCGLPGYSPGDLIDI 65 Query 64 EFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAG 123 F GD +EV FSAG+DRPL+LT EAT L+VALRALA++P VDP AA SAIAKI AA+ Sbjct 66 SFAGDGVEVGFSAGVDRPLRLTRTEATLLVVALRALAELPSGVDPTAALSAIAKIEAASQ 125 Query 124 AVAAVAEQAPT-ESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSY 182 +AV P ESPA A RAA+ RAL I YY+A+ D +T R++DPIRV++ G SY Sbjct 126 GESAVPPAQPEPESPAVRAARAALARGRALRIRYYSATSDAVTDRVIDPIRVVIQGRGSY 185 Query 183 LEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDL-SLPSATLRVA 241 ++AW R ++ VRLFR DR+ DA EL EP+ P + AP + F G+ P A + V+ Sbjct 186 IQAWCRASQAVRLFRLDRLDDATELDEPSRP----QAAPAVPAGFWGETEGSPQALVAVS 241 Query 242 PSASWMLEYYPIRELR---------QLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAP 292 P A+W +E++ + L Q DG + Y S DW+ R LLG G+++R+L P Sbjct 242 PQAAWAIEHHGMTVLEDSSASGSRPQTEDGWLLAKLGYGSPDWLRRFLLGHGTEIRLLDP 301 Query 293 ESLAQRVRDAATAALDAYQAAA 314 LA D+A AL Y A+A Sbjct 302 GELAADTADSARLALRRYAASA 323 >gi|296393803|ref|YP_003658687.1| hypothetical protein Srot_1392 [Segniliparus rotundus DSM 44985] gi|296180950|gb|ADG97856.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=329 Score = 261 bits (668), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 153/317 (49%), Positives = 204/317 (65%), Gaps = 9/317 (2%) Query 4 LSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDF 63 L+TRL ++L+++PYF A+P + A ELG++ +L DLN+LW+CGLPGYSPGDLID Sbjct 6 LATRLTKMLSIIPYFLAHPGQNIRDGAKELGMSVPELHRDLNRLWLCGLPGYSPGDLIDI 65 Query 64 EFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI--AAA 121 F GD +EV FSAG+DRPL+LT EAT L+VALRALA++P VDP AA AI KI A+ Sbjct 66 SFAGDAVEVGFSAGVDRPLRLTRTEATLLVVALRALAELPSGVDPTAALGAIEKIETASQ 125 Query 122 AGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHS 181 G A A Q P ESPA RAA+ RAL I YY+A+ D +T R++DPIRV+L G +S Sbjct 126 GGVAGAPAAQEP-ESPAIRTARAALAAGRALKIRYYSATSDAVTDRVIDPIRVVLQGRNS 184 Query 182 YLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLS-LPSATLRV 240 Y++AW R + VRLFR DR+ DAAEL EP+ P S P T+ F G+ LP A + V Sbjct 185 YIQAWCRTSRAVRLFRLDRLEDAAELPEPSRPEAS----PVVTAGFWGESGELPKALVAV 240 Query 241 APSASWMLEYYPIREL-RQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRV 299 AP A+W +E++ + + DG + Y S W+ R LLG G+++++L P L Sbjct 241 APDAAWAIEHHGMTATGERTEDGWLIAGLGYGSPGWLRRFLLGHGTEIKLLEPAELVSDA 300 Query 300 RDAATAALDAYQAAAPP 316 ++A AL Y A A P Sbjct 301 AESARIALRRYAAFAEP 317 >gi|262202393|ref|YP_003273601.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085740|gb|ACY21708.1| transcriptional regulator protein-like protein [Gordonia bronchialis DSM 43247] Length=326 Score = 261 bits (668), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 151/315 (48%), Positives = 195/315 (62%), Gaps = 17/315 (5%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M+A +RL RLL MVPYFQA+ I +AA +LGVT+ QL +DL L++CGLPGY P DL Sbjct 1 MTAQPSRLSRLLAMVPYFQAHRGIAIDQAARDLGVTSTQLTKDLELLFVCGLPGYYPDDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 I+ EF + V F+AG+DRPL+LTS EA+ LLVAL AL D PGVVD AAR AIAKI Sbjct 61 IELEFSEGHVHVGFTAGMDRPLRLTSTEASTLLVALSALVDTPGVVDRDAARRAIAKIEQ 120 Query 121 AAGA-VAAVAEQ----APTESPAA-AAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRV 174 A G+ V AV+ T P +R AV+ SRAL + YY+AS D++T R+VDPIR+ Sbjct 121 AVGSGVRAVSSDDSGTGDTGDPTTYETIRDAVKKSRALALRYYSASRDSITERVVDPIRL 180 Query 175 LLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLP 234 ++ H+YLEAW R ++GVRLFRFDR+ A EL EP+ PPE A Q L D + LP Sbjct 181 QVMDQHTYLEAWCRLSDGVRLFRFDRVEAATELDEPSAPPEQAAQQNQSVVLAD-NPDLP 239 Query 235 SATLRVAPSASWMLEYY--------PIRELRQLPDGSCEV--AMTYASEDWMTRLLLGFG 284 A + + P W+L+YY P ++ PD V + Y S +W+ R LLGFG Sbjct 240 VAEIEIDPDHLWVLDYYLMEPELTEPGGDVAARPDPQAPVRGRLVYGSPEWLIRFLLGFG 299 Query 285 SDVRVLAPESLAQRV 299 VRV+ E + Sbjct 300 GAVRVVGDEQFTDDI 314 >gi|145594781|ref|YP_001159078.1| hypothetical protein Strop_2250 [Salinispora tropica CNB-440] gi|145304118|gb|ABP54700.1| hypothetical protein Strop_2250 [Salinispora tropica CNB-440] Length=337 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 141/295 (48%), Positives = 183/295 (63%), Gaps = 3/295 (1%) Query 7 RLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEFC 66 RL RLLN+VP+ A P I AEAA +LGVT +QL EDL LW+CGLPGY PGDLID F Sbjct 15 RLARLLNLVPFLLARPGIEIAEAAGDLGVTERQLREDLELLWVCGLPGYGPGDLIDMAFD 74 Query 67 GDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGAV- 125 GD + +T+ AGIDRPL+LT EA L+VALR LA+ PGV + +A A+ KI +AAG Sbjct 75 GDRVTITYDAGIDRPLRLTPDEALALVVALRMLAETPGVANREAVERALVKIESAAGDRL 134 Query 126 -AAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLE 184 A VA + P ++ A +RAAV + RAL I YY+ + D R+VDP+R+L++GG +Y+E Sbjct 135 GAPVAVRLPADNRRVAELRAAVESGRALRITYYSVARDETIERVVDPLRILVVGGRAYME 194 Query 185 AWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSA 244 AW R AEG+R+FR DRI L EPA P A +F LP TLR+ S Sbjct 195 AWCRRAEGMRVFRVDRIDAVTRLAEPARVPSQAVPHDLTGGVFRPTADLPLVTLRIGRSE 254 Query 245 SWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQRV 299 W+ EYYP + + DG V++ W R +LG G +V V+AP LA +V Sbjct 255 RWITEYYPCERV-EPGDGEWLVSLRVTDLGWARRFVLGLGPEVTVVAPAELATQV 308 >gi|134098829|ref|YP_001104490.1| transcriptional regulator-like protein [Saccharopolyspora erythraea NRRL 2338] gi|291005813|ref|ZP_06563786.1| transcriptional regulator-like protein [Saccharopolyspora erythraea NRRL 2338] gi|133911452|emb|CAM01565.1| transcriptional regulator-like protein [Saccharopolyspora erythraea NRRL 2338] Length=323 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 157/314 (50%), Positives = 193/314 (62%), Gaps = 7/314 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 M + + RL RLL +VPY + P I A+AAA+ GV+ +QL DL LWMCGLPGY PGDL Sbjct 1 MRSATERLPRLLALVPYLLSRPGIPVADAAADFGVSEQQLRRDLELLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F DT+ VT+ AG++RPL+LT+ EAT LLVALRALA+ PG+ D A + A+AK+ Sbjct 61 IDLSFESDTVTVTYDAGMNRPLRLTASEATALLVALRALAETPGITDTDAVQRALAKVED 120 Query 121 AAGAV---AAVAEQAPTESPAAAAVRAAVRNS----RALTIDYYAASHDTLTTRIVDPIR 173 A G V A E P A VR AV+ + RAL + YY AS D ++ R VDP+R Sbjct 121 AVGQARPAGVVVGLAGREGPMAPGVREAVQEATTGGRALRMRYYTASRDEISERTVDPMR 180 Query 174 VLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSL 233 +LLI G SYLEAW R+AEG+RLFR DRI D L EPA PP A A LF Sbjct 181 LLLIDGRSYLEAWCRQAEGMRLFRLDRIDDIEVLPEPAQPPPDAHPADFSEGLFRPAPEQ 240 Query 234 PSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPE 293 A L + P A W+ EYYP+ +L +LP G V M Y+ WM RL+LG G VRV P+ Sbjct 241 RMAELELEPDARWVAEYYPVDDLVELPGGRARVRMRYSDRSWMVRLVLGQGGRVRVSGPD 300 Query 294 SLAQRVRDAATAAL 307 LA VR A AL Sbjct 301 DLACDVRQRAEEAL 314 >gi|159037964|ref|YP_001537217.1| hypothetical protein Sare_2368 [Salinispora arenicola CNS-205] gi|157916799|gb|ABV98226.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length=340 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 146/298 (49%), Positives = 184/298 (62%), Gaps = 9/298 (3%) Query 3 ALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLID 62 A + RL RLLN+VPY A P I AEAA +LGVT +QL EDL LW+CGLPGY PGDLID Sbjct 11 ASADRLARLLNLVPYLLARPGIEVAEAAGDLGVTERQLREDLELLWVCGLPGYGPGDLID 70 Query 63 FEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI--AA 120 F GD + +T+ AGIDRPL+LT EA L+VALR LA+ PGV + +A A+ KI AA Sbjct 71 MAFDGDRVTITYDAGIDRPLRLTPDEALALVVALRMLAETPGVANREAVERALVKIENAA 130 Query 121 AAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGH 180 G A VA + P ++ +RAAV + RAL I YY+ + D RIVDP+R+L+IGG Sbjct 131 GDGLGAPVAVRLPADNRRVTELRAAVESGRALRITYYSVARDETIERIVDPLRMLIIGGR 190 Query 181 SYLEAWSREAEGVRLFRFDRIVDAAELGEPA-VPPESARQAPPDTS--LFDGDLSLPSAT 237 +YLEAW R AEG+RLFR DR L EPA VPP++ P D + +F LP T Sbjct 191 AYLEAWCRRAEGMRLFRVDRTDAVTRLAEPARVPPQA---VPHDLTAGVFRPTPDLPLVT 247 Query 238 LRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESL 295 LR+ W+ EYYP + Q DG V++ W R +LG G +V V+AP L Sbjct 248 LRIGRGERWITEYYPCERVEQ-SDGEWLVSLRVTDLGWARRFVLGLGPEVTVVAPPEL 304 >gi|326382286|ref|ZP_08203978.1| transcriptional regulator-like protein [Gordonia neofelifaecis NRRL B-59395] gi|326199016|gb|EGD56198.1| transcriptional regulator-like protein [Gordonia neofelifaecis NRRL B-59395] Length=320 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 143/295 (49%), Positives = 181/295 (62%), Gaps = 14/295 (4%) Query 6 TRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEF 65 TRL RLL MVPYF A P I + AAA+LG+T QL+ DL QL++CGLPGY P LID +F Sbjct 7 TRLSRLLAMVPYFLARPGIKLSTAAADLGLTPSQLQSDLEQLYVCGLPGYGPEHLIDIQF 66 Query 66 CGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAG-- 123 + V F+AGID PL+LT PEA LL+AL L++ G + A RSAIAKI A G Sbjct 67 WDGYVSVVFAAGIDHPLRLTGPEANVLLMALNMLSETRGAAEADAVRSAIAKIEEAMGST 126 Query 124 --AVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHS 181 AV+A A E P A +R A+ RAL + YY AS D +T R VDPI + + G++ Sbjct 127 HRAVSADAVAVDEERPVDAVIRRAMEQRRALRLTYYTASRDEVTERTVDPILIKAVDGNT 186 Query 182 YLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFD---GDLSLPSATL 238 YLEAW R +EG+RLFRFDRI A E GE + PP A PP+ + F G+ LP+A + Sbjct 187 YLEAWCRSSEGIRLFRFDRIESAEETGEESRPP--ADVVPPEPTGFSVLTGE--LPTARI 242 Query 239 RVAPSASWMLEYY---PIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVL 290 + P A W+LEYY EL + P+G + Y S W+ R LLGFG VR+L Sbjct 243 EIDPDAVWLLEYYAAEADEELAEEPEGPISATIRYGSPQWLARFLLGFGGRVRLL 297 >gi|284991138|ref|YP_003409692.1| transcriptional regulator-like protein [Geodermatophilus obscurus DSM 43160] gi|284064383|gb|ADB75321.1| transcriptional regulator-like protein [Geodermatophilus obscurus DSM 43160] Length=331 Score = 239 bits (610), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 136/301 (46%), Positives = 178/301 (60%), Gaps = 9/301 (2%) Query 1 MSALST--RLVRLLNMVPYFQANPR-ITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSP 57 MSA +T R+ RLL++VPY A P + AE A + GV +QL D+ LWMCGLPGY P Sbjct 1 MSAPTTTERMTRLLSLVPYLTARPEGVPLAEVARDFGVPERQLRRDMELLWMCGLPGYGP 60 Query 58 GDLIDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAK 117 GDLID F GD + VTF+AG+ RPL+LT+ EA L+VALR L ++PG+ + +A A+AK Sbjct 61 GDLIDLAFEGDRVRVTFTAGMVRPLRLTTDEAVALVVALRTLLELPGLAEREAVSRALAK 120 Query 118 IAAAAGAVAA----VAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIR 173 ++AAAG A VA + A A VR + RAL + YY + D T R VDP+R Sbjct 121 VSAAAGHAAERRTPVALSVDAKEQALAVVREGLERGRALHLHYYVPTRDERTERTVDPLR 180 Query 174 VLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSL 233 +LL+ G YLEAWSRE GVRLFR DRI D L EP+ PP D L+ + Sbjct 181 LLLVDGRWYLEAWSREVGGVRLFRLDRIDDVEVLDEPSAPPPGVPLRDVDAGLYQPEPGA 240 Query 234 PSATLRVAPSASWMLEYYPIRELRQL--PDGSCEVAMTYASEDWMTRLLLGFGSDVRVLA 291 P LR+A +A W+ EYYP+ ++R++ P G VA+ A W RL+ G V Sbjct 241 PVVRLRLARAARWVAEYYPVEDVREVQDPPGGLAVALRTADMAWARRLVASLGGAATVDQ 300 Query 292 P 292 P Sbjct 301 P 301 >gi|325001562|ref|ZP_08122674.1| transcriptional regulator-like protein [Pseudonocardia sp. P1] Length=325 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 138/319 (44%), Positives = 169/319 (53%), Gaps = 38/319 (11%) Query 27 AEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFEFCGDTIEVTFSAGIDRPLKLTS 86 AEAAA+ GV KQL +DL LWMCGLPGY PGDL+D F GDT++V F AG+ RPL+LT+ Sbjct 1 AEAAADFGVDEKQLRKDLELLWMCGLPGYGPGDLVDLSFAGDTVDVVFDAGLTRPLRLTT 60 Query 87 PEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGAVAAVA-----------EQAPTE 135 EAT LLVALR L PGVVD A AI KI AA G A E P E Sbjct 61 SEATALLVALRMLHQSPGVVDSDAVARAIGKIEAAVGTAGEQAGTGGLDGLVAVESGPGE 120 Query 136 SPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGGHSYLEAWSREAEGVRL 195 + A VR A+ RAL I Y+ A D ++ R VDP+R+++ G SYLEAW R A GVR+ Sbjct 121 RESTAVVRRALDRGRALRIVYFTAGRDAVSRRDVDPMRLVVAEGRSYLEAWCRRAGGVRM 180 Query 196 FRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSLPSATLRVAPSASWMLEYYPIRE 255 FR DR+ A ELGEP+ P A LF A L + P A W+ EYYP+ + Sbjct 181 FRLDRVEQAEELGEPSRPHPDAEPTDVSHGLFGRREGQRHAVLELEPEAHWVAEYYPVDD 240 Query 256 LR---------------------------QLPDGSCEVAMTYASEDWMTRLLLGFGSDVR 288 +R P G V + +A DW+ RL+LG G R Sbjct 241 VRVPGAGDTEGDPPPGTAPRGVPQADGGDPAPAGRLRVLLRFADPDWLVRLVLGLGGAAR 300 Query 289 VLAPESLAQRVRDAATAAL 307 ++ P LA VR A AL Sbjct 301 IVEPAELAGAVRARAREAL 319 >gi|291301915|ref|YP_003513193.1| hypothetical protein Snas_4455 [Stackebrandtia nassauensis DSM 44728] gi|290571135|gb|ADD44100.1| conserved hypothetical protein [Stackebrandtia nassauensis DSM 44728] Length=317 Score = 234 bits (597), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 139/315 (45%), Positives = 189/315 (60%), Gaps = 8/315 (2%) Query 5 STRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDLIDFE 64 ++RL R+LN+VPY A P I AAA+LG++ +L +DL LWMCGLPGY PGDLID Sbjct 4 ASRLSRVLNLVPYLLARPGIRIDAAAADLGISVAELRDDLTLLWMCGLPGYGPGDLIDIA 63 Query 65 FCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAAAAGA 124 F DT+ VT+ AG+ RP++L+ EA L+VALR LAD PG+ D A R + K+A AAG Sbjct 64 FDDDTVTVTYDAGMTRPVRLSPDEALALVVALRMLADTPGLSDRDAVRRTLDKVAEAAGD 123 Query 125 VAAVAEQAPT-----ESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIRVLLIGG 179 AA A Q E+ R V + +A+ + YY+A D T R+VDPIRV++ Sbjct 124 AAASASQVSVATTVDETNVDVFSRIVV-DGKAVRLTYYSAGRDKTTERVVDPIRVVIADD 182 Query 180 HSYLEAWSREAEGVRLFRFDRIVDAAELGEP-AVPPESARQAPPDTSLFDGDLS-LPSAT 237 H+YL AW R AE +R FR DRI L EP AVPP + + ++F + S LP+ Sbjct 183 HAYLHAWCRSAEDIRRFRLDRIDAHTVLDEPAAVPPHARDRTDAPGAVFRTEASQLPTVV 242 Query 238 LRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPESLAQ 297 LRV+ A W+ EYYP +++R DG V + +W RL+L G++ +AP+SL + Sbjct 243 LRVSRGARWIAEYYPCQDVRPEADGRWLVTLRARDLNWAKRLVLSLGTEAEAVAPDSLRE 302 Query 298 RVRDAATAALDAYQA 312 V D A AL AY+A Sbjct 303 AVIDDARTALAAYEA 317 >gi|300786761|ref|YP_003767052.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796275|gb|ADJ46650.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|340528245|gb|AEK43450.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei S699] Length=326 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 144/306 (48%), Positives = 175/306 (58%), Gaps = 7/306 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MS + R+ RLL +VPY A P + +AA + V+ KQL +DL LWMCGLPGY PGDL Sbjct 1 MSGSTDRMPRLLALVPYLLARPGVRIDDAAQDFDVSPKQLRKDLELLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKI-- 118 ID F GDTI VT AG+ RPL+LT EAT LLVALRALA+ PGVVD A R +IAKI Sbjct 61 IDLSFEGDTIIVTHDAGMSRPLRLTGGEATALLVALRALAETPGVVDGDAVRRSIAKIEA 120 Query 119 -----AAAAGAVAAVAEQAPTESPAAAAVRAAVRNSRALTIDYYAASHDTLTTRIVDPIR 173 A V + + V A+R+ RAL I YY AS D +T R VDP+R Sbjct 121 AAGQAQPAGVVVGGGVREGEKTARTREEVARALRDGRALRIRYYTASKDQITERTVDPMR 180 Query 174 VLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSL 233 +L++ YLEAW R AE VRLFR DRI + L EPA PP A +F Sbjct 181 LLIVQAVGYLEAWCRRAEDVRLFRLDRIDELTVLDEPARPPAHAHPTDISEGVFRERPDQ 240 Query 234 PSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPE 293 A L + P A W+ EYYP EL +L G + M YA + WM RL+LG G + V +P Sbjct 241 REAVLVLDPDARWVAEYYPCEELDELDGGRLRIRMRYADQSWMVRLVLGLGGEALVESPA 300 Query 294 SLAQRV 299 LA V Sbjct 301 DLASDV 306 >gi|302527215|ref|ZP_07279557.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302436110|gb|EFL07926.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=326 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 151/306 (50%), Positives = 181/306 (60%), Gaps = 7/306 (2%) Query 1 MSALSTRLVRLLNMVPYFQANPRITRAEAAAELGVTAKQLEEDLNQLWMCGLPGYSPGDL 60 MSA R+ RLL +VPY A P I EAA + VT +QL +DL LWMCGLPGY PGDL Sbjct 1 MSASGERMPRLLALVPYLLARPGIRIDEAAHDFDVTPRQLRKDLELLWMCGLPGYGPGDL 60 Query 61 IDFEFCGDTIEVTFSAGIDRPLKLTSPEATGLLVALRALADIPGVVDPQAARSAIAKIAA 120 ID F GDTI VT AG+ RPL+LT EAT LLVALRALA+ PGV D A R AIAKI Sbjct 61 IDLSFEGDTIVVTHDAGMSRPLRLTGGEATALLVALRALAETPGVADGDAVRRAIAKIED 120 Query 121 AAG-AVAAVAEQAPTESPAAAAVR------AAVRNSRALTIDYYAASHDTLTTRIVDPIR 173 AAG A A A A R A+++ RAL + YY AS D +T R VDP+R Sbjct 121 AAGQARPAGVVVGGGVREGARAARTRETVAGALQDGRALRMRYYTASRDQITERTVDPMR 180 Query 174 VLLIGGHSYLEAWSREAEGVRLFRFDRIVDAAELGEPAVPPESARQAPPDTSLFDGDLSL 233 ++++ G YLEAW R EGVRLFR DR+ L EPA PP AR +F Sbjct 181 LVIVQGVGYLEAWCRRVEGVRLFRLDRVDALTVLDEPAAPPAHARPTDLSDGVFSARPDQ 240 Query 234 PSATLRVAPSASWMLEYYPIRELRQLPDGSCEVAMTYASEDWMTRLLLGFGSDVRVLAPE 293 A L + P A W+ EYYP EL +L G +AM Y+ E WM RL+L G + +V +P Sbjct 241 RVAHLVLDPDARWVAEYYPCEELDELDGGRLRIAMRYSDEPWMVRLVLSLGGEAQVESPA 300 Query 294 SLAQRV 299 +LAQ V Sbjct 301 TLAQAV 306 Lambda K H 0.318 0.132 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 549222890922 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40