BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2096c Length=332 Score E Sequences producing significant alignments: (Bits) Value gi|15609233|ref|NP_216612.1| hypothetical protein Rv2096c [Mycob... 647 0.0 gi|289745372|ref|ZP_06504750.1| conserved hypothetical protein [... 644 0.0 gi|289447717|ref|ZP_06437461.1| conserved hypothetical protein [... 644 0.0 gi|340627109|ref|YP_004745561.1| hypothetical protein MCAN_21231... 642 0.0 gi|118463642|ref|YP_881606.1| hypothetical protein MAV_2407 [Myc... 550 1e-154 gi|41407930|ref|NP_960766.1| hypothetical protein MAP1832c [Myco... 549 2e-154 gi|254775076|ref|ZP_05216592.1| hypothetical protein MaviaA2_104... 549 3e-154 gi|240173416|ref|ZP_04752074.1| hypothetical protein MkanA1_2914... 543 2e-152 gi|183983081|ref|YP_001851372.1| hypothetical protein MMAR_3082 ... 533 2e-149 gi|254819639|ref|ZP_05224640.1| hypothetical protein MintA_06939... 529 3e-148 gi|118617838|ref|YP_906170.1| hypothetical protein MUL_2328 [Myc... 529 3e-148 gi|342859800|ref|ZP_08716453.1| hypothetical protein MCOL_13013 ... 526 3e-147 gi|15827690|ref|NP_301953.1| hypothetical protein ML1329 [Mycoba... 515 4e-144 gi|120404416|ref|YP_954245.1| hypothetical protein Mvan_3444 [My... 456 2e-126 gi|315444005|ref|YP_004076884.1| transcriptional regulator [Myco... 448 5e-124 gi|145223678|ref|YP_001134356.1| hypothetical protein Mflv_3091 ... 447 1e-123 gi|126435093|ref|YP_001070784.1| hypothetical protein Mjls_2509 ... 441 7e-122 gi|108799439|ref|YP_639636.1| hypothetical protein Mmcs_2472 [My... 438 5e-121 gi|116266948|gb|ABJ96320.1| putative transcriptional regulator [... 434 1e-119 gi|169629271|ref|YP_001702920.1| hypothetical protein MAB_2185 [... 433 2e-119 gi|296165179|ref|ZP_06847726.1| probable transcriptional regulat... 422 4e-116 gi|333990759|ref|YP_004523373.1| hypothetical protein JDM601_211... 404 1e-110 gi|336461984|gb|EGO40833.1| hypothetical protein MAPs_24820 [Myc... 376 3e-102 gi|111017859|ref|YP_700831.1| hypothetical protein RHA1_ro00840 ... 374 9e-102 gi|229493602|ref|ZP_04387387.1| conserved hypothetical protein [... 373 2e-101 gi|226359992|ref|YP_002777770.1| proteasome accessory factor B [... 373 3e-101 gi|226306657|ref|YP_002766617.1| proteasome accessory factor B [... 372 3e-101 gi|54025136|ref|YP_119378.1| putative transcriptional regulator ... 372 6e-101 gi|1666182|emb|CAB04763.1| ORF10(1) [Rhodococcus erythropolis] 372 7e-101 gi|325676824|ref|ZP_08156497.1| transcriptional regulator [Rhodo... 336 3e-90 gi|312139726|ref|YP_004007062.1| transcriptional regulator [Rhod... 336 3e-90 gi|333919681|ref|YP_004493262.1| proteasome accessory factor B [... 336 4e-90 gi|262202392|ref|YP_003273600.1| transcriptional regulator [Gord... 303 3e-80 gi|256376375|ref|YP_003100035.1| transcriptional regulator prote... 301 8e-80 gi|296393802|ref|YP_003658686.1| hypothetical protein Srot_1391 ... 300 2e-79 gi|331697094|ref|YP_004333333.1| putative transcriptional regula... 297 2e-78 gi|343927934|ref|ZP_08767400.1| proteasome accessory factor B [G... 296 3e-78 gi|300786762|ref|YP_003767053.1| HTH type 11 transcriptional reg... 288 7e-76 gi|134098828|ref|YP_001104489.1| transcriptional regulator-like ... 285 5e-75 gi|302527214|ref|ZP_07279556.1| conserved hypothetical protein [... 283 3e-74 gi|291005814|ref|ZP_06563787.1| transcriptional regulator-like p... 280 2e-73 gi|257056201|ref|YP_003134033.1| putative transcriptional regula... 276 3e-72 gi|317508590|ref|ZP_07966251.1| hypothetical protein HMPREF9336_... 266 4e-69 gi|296139873|ref|YP_003647116.1| hypothetical protein Tpau_2167 ... 260 3e-67 gi|284032984|ref|YP_003382915.1| transcriptional regulator prote... 253 3e-65 gi|271967144|ref|YP_003341340.1| transcriptional regulator [Stre... 245 8e-63 gi|326382285|ref|ZP_08203977.1| transcriptional regulator-like p... 241 1e-61 gi|330468510|ref|YP_004406253.1| hypothetical protein VAB18032_2... 230 2e-58 gi|296269799|ref|YP_003652431.1| transcriptional regulator prote... 229 3e-58 gi|302867427|ref|YP_003836064.1| hypothetical protein Micau_2957... 228 7e-58 >gi|15609233|ref|NP_216612.1| hypothetical protein Rv2096c [Mycobacterium tuberculosis H37Rv] gi|15841587|ref|NP_336624.1| hypothetical protein MT2157 [Mycobacterium tuberculosis CDC1551] gi|31793279|ref|NP_855772.1| hypothetical protein Mb2123c [Mycobacterium bovis AF2122/97] 69 more sequence titles Length=332 Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/332 (100%), Positives = 332/332 (100%), Gaps = 0/332 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY Sbjct 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS Sbjct 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE Sbjct 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA Sbjct 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 >gi|289745372|ref|ZP_06504750.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289758213|ref|ZP_06517591.1| proteasome accessory factor B [Mycobacterium tuberculosis T85] gi|294997040|ref|ZP_06802731.1| hypothetical protein Mtub2_21678 [Mycobacterium tuberculosis 210] gi|289685900|gb|EFD53388.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289713777|gb|EFD77789.1| proteasome accessory factor B [Mycobacterium tuberculosis T85] gi|326903710|gb|EGE50643.1| hypothetical protein TBPG_01591 [Mycobacterium tuberculosis W-148] gi|339295017|gb|AEJ47128.1| hypothetical protein CCDC5079_1938 [Mycobacterium tuberculosis CCDC5079] gi|339298642|gb|AEJ50752.1| hypothetical protein CCDC5180_1915 [Mycobacterium tuberculosis CCDC5180] Length=332 Score = 644 bits (1662), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/332 (99%), Positives = 331/332 (99%), Gaps = 0/332 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHR SRAEPY Sbjct 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRPSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS Sbjct 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE Sbjct 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA Sbjct 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 >gi|289447717|ref|ZP_06437461.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289420675|gb|EFD17876.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=332 Score = 644 bits (1661), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/332 (99%), Positives = 331/332 (99%), Gaps = 0/332 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAA AVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAEAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY Sbjct 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS Sbjct 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE Sbjct 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA Sbjct 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 >gi|340627109|ref|YP_004745561.1| hypothetical protein MCAN_21231 [Mycobacterium canettii CIPT 140010059] gi|340005299|emb|CCC44455.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=332 Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/332 (99%), Positives = 330/332 (99%), Gaps = 0/332 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPS EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY Sbjct 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS Sbjct 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVAQKVTE PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE Sbjct 241 IVAQKVTEAPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 ITGYGADAIVLQPGSLR+DVLARLRAQAGALA Sbjct 301 ITGYGADAIVLQPGSLRNDVLARLRAQAGALA 332 >gi|118463642|ref|YP_881606.1| hypothetical protein MAV_2407 [Mycobacterium avium 104] gi|118164929|gb|ABK65826.1| conserved hypothetical protein [Mycobacterium avium 104] Length=351 Score = 550 bits (1417), Expect = 1e-154, Method: Compositional matrix adjust. Identities = 284/333 (86%), Positives = 300/333 (91%), Gaps = 3/333 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYS+S S EAFSRMFERDKNELRDLGI Sbjct 3 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSESASAEAFSRMFERDKNELRDLGI 62 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVS ++PTEGYRINRDAYAL+PV+LTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 63 PLEVGRVSPMDPTEGYRINRDAYALAPVDLTPDEAAAVAVATQLWESPELITATQGALLK 122 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLD GAPVAIAS A V GLRGSE+VLGILLSAIDS Q VQF HR SRAEPY Sbjct 123 LRAAGVDVDPLDDGAPVAIASPAGVPGLRGSEEVLGILLSAIDSRQAVQFPHRPSRAEPY 182 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVT+KGRWYLVGHDRDRDATR FRLSRIG VTPIGP GA TVP GVDLR Sbjct 183 ATRTVEPWGVVTQKGRWYLVGHDRDRDATRTFRLSRIGPGVTPIGPPGAVTVPDGVDLRR 242 Query 241 IVAQKVTEV---PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 IVAQ VT+V P G QA VWVA+GRATALRRAGR G RQLGGRDGEVIEL+IR++D+L Sbjct 243 IVAQTVTDVSATPAGGQARVWVADGRATALRRAGRPVGTRQLGGRDGEVIELDIRATDQL 302 Query 298 AREITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 AR+I GYGADA+VL+P SLRDDVLARLRA AGA Sbjct 303 ARDIAGYGADAVVLEPQSLRDDVLARLRAHAGA 335 >gi|41407930|ref|NP_960766.1| hypothetical protein MAP1832c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396284|gb|AAS04149.1| hypothetical protein MAP_1832c [Mycobacterium avium subsp. paratuberculosis K-10] Length=351 Score = 549 bits (1415), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 284/333 (86%), Positives = 300/333 (91%), Gaps = 3/333 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYS+S S EAFSRMFERDKNELRDLGI Sbjct 3 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSESVSAEAFSRMFERDKNELRDLGI 62 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVS ++PTEGYRINRDAYAL+PV+LTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 63 PLEVGRVSPMDPTEGYRINRDAYALAPVDLTPDEAAAVAVATQLWESPELITATQGALLK 122 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLD GAPVAIAS A V GLRGSE+VLGILLSAIDS Q VQF HR SRAEPY Sbjct 123 LRAAGVDVDPLDDGAPVAIASPAGVPGLRGSEEVLGILLSAIDSRQAVQFPHRPSRAEPY 182 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVT+KGRWYLVGHDRDRDATR FRLSRIG VTPIGP GA TVP GVDLR Sbjct 183 ATRTVEPWGVVTQKGRWYLVGHDRDRDATRTFRLSRIGPGVTPIGPPGAVTVPDGVDLRR 242 Query 241 IVAQKVTEV---PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 IVAQ VT+V P G QA VWVA+GRATALRRAGR G RQLGGRDGEVIEL+IR++D+L Sbjct 243 IVAQTVTDVSATPAGGQARVWVADGRATALRRAGRPVGTRQLGGRDGEVIELDIRATDQL 302 Query 298 AREITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 AR+I GYGADA+VL+P SLRDDVLARLRA AGA Sbjct 303 ARDIAGYGADAVVLEPQSLRDDVLARLRAHAGA 335 >gi|254775076|ref|ZP_05216592.1| hypothetical protein MaviaA2_10441 [Mycobacterium avium subsp. avium ATCC 25291] Length=349 Score = 549 bits (1414), Expect = 3e-154, Method: Compositional matrix adjust. Identities = 283/333 (85%), Positives = 299/333 (90%), Gaps = 3/333 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYS+S S EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSESASAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVS ++PTEGYRINRDAYAL+PV+LTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSPMDPTEGYRINRDAYALAPVDLTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLD GAPVAIAS A V GLRGSE+VLGILLSAIDS Q VQF HR SRAEPY Sbjct 121 LRAAGVDVDPLDDGAPVAIASPAGVPGLRGSEEVLGILLSAIDSRQAVQFPHRPSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 +RTVEPWGVVT+KGRWYLVGHDRDRDATR FRLSRIG VTPIGP GA TVP GVDLR Sbjct 181 AIRTVEPWGVVTQKGRWYLVGHDRDRDATRTFRLSRIGPGVTPIGPPGAVTVPDGVDLRR 240 Query 241 IVAQKVTEV---PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 IVAQ VT+V P G QA VWVA+GRATALRRAGR G RQLGGRDGEVIEL+IR +D+L Sbjct 241 IVAQTVTDVSATPAGGQARVWVADGRATALRRAGRPVGTRQLGGRDGEVIELDIRGTDQL 300 Query 298 AREITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 AR+I GYGADA+V +P SLRDDVLARLRA AGA Sbjct 301 ARDIAGYGADAVVFEPQSLRDDVLARLRAHAGA 333 >gi|240173416|ref|ZP_04752074.1| hypothetical protein MkanA1_29146 [Mycobacterium kansasii ATCC 12478] Length=332 Score = 543 bits (1398), Expect = 2e-152, Method: Compositional matrix adjust. Identities = 277/330 (84%), Positives = 296/330 (90%), Gaps = 0/330 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSP+ EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPTAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVG+VS L+PTEGYRINRDAYAL PV+LTPDEA AVAVATQLWESPEL+TATQGALLK Sbjct 61 PLEVGKVSNLDPTEGYRINRDAYALPPVDLTPDEATAVAVATQLWESPELVTATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP+D+ A V IAS A ++GLRGSE+VLGILLSAIDS Q VQF HRSSRAEPY Sbjct 121 LRAAGVDVDPVDSEAAVTIASPAGLTGLRGSENVLGILLSAIDSRQAVQFRHRSSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVTEKGRWYLVGHDRDR ATRVFRLSRI ++TPIGPAGA VP VDLR Sbjct 181 TTRTVEPWGVVTEKGRWYLVGHDRDRGATRVFRLSRISGEITPIGPAGAIAVPDDVDLRG 240 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA KVTE PTG +ATVWVA GRATALRRAG+ GPR+L GRDG+VIEL+I SSDRLARE Sbjct 241 IVAAKVTEAPTGMRATVWVAGGRATALRRAGQPVGPRRLAGRDGDVIELDIGSSDRLARE 300 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 I GYGADAIVL+P LR+DVLARL A AGA Sbjct 301 IAGYGADAIVLEPAILREDVLARLHAHAGA 330 >gi|183983081|ref|YP_001851372.1| hypothetical protein MMAR_3082 [Mycobacterium marinum M] gi|183176407|gb|ACC41517.1| conserved protein [Mycobacterium marinum M] Length=332 Score = 533 bits (1372), Expect = 2e-149, Method: Compositional matrix adjust. Identities = 275/329 (84%), Positives = 292/329 (89%), Gaps = 3/329 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVER+VNLVIALLSTRGYITAEK+RSSVAGYSDSP+ EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERMVNLVIALLSTRGYITAEKVRSSVAGYSDSPTAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVS+ +PTEGYRINRDAYAL PVELTPDE AAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSSTDPTEGYRINRDAYALPPVELTPDETAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP APVAIAS A V GLRGSEDVLGILL+AIDSGQ V+F HR+SR EPY Sbjct 121 LRAAGVDVDP---DAPVAIASPAGVPGLRGSEDVLGILLAAIDSGQAVRFPHRASRHEPY 177 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVTEKGRWYLVGHDRDR ATR FRLSRIGA V P+G G VP VDLR Sbjct 178 VTRTVEPWGVVTEKGRWYLVGHDRDRGATRTFRLSRIGADVAPVGAPGEAEVPEDVDLRQ 237 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA+ V E PTG QATVWVA+GRATALRRAGRS GPR+L GRDGEVIELEI SSDRLAR+ Sbjct 238 IVARTVAESPTGMQATVWVADGRATALRRAGRSMGPRRLAGRDGEVIELEIGSSDRLARD 297 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 ITG+GADAIVL+P +LR+DVLARLRA AG Sbjct 298 ITGHGADAIVLEPPALREDVLARLRALAG 326 >gi|254819639|ref|ZP_05224640.1| hypothetical protein MintA_06939 [Mycobacterium intracellulare ATCC 13950] Length=332 Score = 529 bits (1362), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 277/335 (83%), Positives = 294/335 (88%), Gaps = 6/335 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYS+S S EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSESASAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVSA +PTEGYRINRDAY+L+PV+LTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSAWDPTEGYRINRDAYSLAPVDLTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP APVAIAS V GLRGSEDVLGILLSAIDS + VQF HR SRAEPY Sbjct 121 LRAAGVDVDP---DAPVAIASPVGVPGLRGSEDVLGILLSAIDSRRAVQFPHRPSRAEPY 177 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVTEKGRWYLVGHDRDRDATR FRLSRIG VTPIGPAGA TVP G+DLR Sbjct 178 ATRTVEPWGVVTEKGRWYLVGHDRDRDATRTFRLSRIGPDVTPIGPAGAVTVPEGIDLRR 237 Query 241 IVAQKVTEV---PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 IVAQ VT+V P G A VWVA GRATALRRAGR G R+LG RDGEV+EL+IRS+D+L Sbjct 238 IVAQTVTDVAATPAGGVAQVWVAAGRATALRRAGRHVGERRLGERDGEVVELDIRSTDQL 297 Query 298 AREITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 AR++ GYGADA+VL+P SLRDDVLARLRA AG A Sbjct 298 ARDVAGYGADALVLEPQSLRDDVLARLRAHAGVSA 332 >gi|118617838|ref|YP_906170.1| hypothetical protein MUL_2328 [Mycobacterium ulcerans Agy99] gi|118569948|gb|ABL04699.1| conserved protein [Mycobacterium ulcerans Agy99] Length=332 Score = 529 bits (1362), Expect = 3e-148, Method: Compositional matrix adjust. Identities = 272/329 (83%), Positives = 292/329 (89%), Gaps = 3/329 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVER+VNLVIALLSTRGYITAEK+RSSVAGYSDSP+ EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERMVNLVIALLSTRGYITAEKVRSSVAGYSDSPTAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVS+ +PTEGYRINRDAYAL PVELTPDE AAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSSTDPTEGYRINRDAYALPPVELTPDETAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP APVAIAS A V GLRGSEDVLGILL+AIDSGQ V+F HR+SR EPY Sbjct 121 LRAAGVDVDP---DAPVAIASPAGVPGLRGSEDVLGILLAAIDSGQAVRFPHRASRHEPY 177 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVTEKGRWYLVGHDRDR ATR FRLSRIGA V P+G G + +P VDLR Sbjct 178 VTRTVEPWGVVTEKGRWYLVGHDRDRGATRTFRLSRIGADVAPVGAPGESKIPEDVDLRQ 237 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA+ V E PTG QATVWVA+GRATALRRAG S GPR+L GRDGEVI+LEI SSDRLAR+ Sbjct 238 IVARTVAESPTGMQATVWVADGRATALRRAGPSMGPRRLAGRDGEVIKLEIGSSDRLARD 297 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 ITG+GADAIVL+P +LR+DVLARLRA AG Sbjct 298 ITGHGADAIVLEPPALREDVLARLRALAG 326 >gi|342859800|ref|ZP_08716453.1| hypothetical protein MCOL_13013 [Mycobacterium colombiense CECT 3035] gi|342132932|gb|EGT86152.1| hypothetical protein MCOL_13013 [Mycobacterium colombiense CECT 3035] Length=345 Score = 526 bits (1354), Expect = 3e-147, Method: Compositional matrix adjust. Identities = 276/331 (84%), Positives = 290/331 (88%), Gaps = 5/331 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYI+AEKIRSSVAGYSDS S EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYISAEKIRSSVAGYSDSASAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGR SA +PTEGYRINRDAY+L+PV+LTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRASAWDPTEGYRINRDAYSLAPVDLTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP APVAIAS A V GLRGSE+VLGILLSAIDSGQ VQF HR SRAEPY Sbjct 121 LRAAGVDVDP---DAPVAIASPAGVPGLRGSEEVLGILLSAIDSGQAVQFPHRPSRAEPY 177 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVTEKGRWYLVGHDRDRDATR FRLSRIG VTPIGP GA TVP VDLR Sbjct 178 ATRTVEPWGVVTEKGRWYLVGHDRDRDATRTFRLSRIGPDVTPIGPPGAVTVPKDVDLRK 237 Query 241 IVAQKVTEV--PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLA 298 IVAQ VT+V P QA VWVA+GRATALRRAGR G RQ+GGR GEVIEL+I S+D+LA Sbjct 238 IVAQTVTDVSSPIVGQARVWVADGRATALRRAGRPVGARQVGGRGGEVIELDISSADQLA 297 Query 299 REITGYGADAIVLQPGSLRDDVLARLRAQAG 329 R+I GY ADA+VL P SLRDDVLARLRA AG Sbjct 298 RDIAGYAADALVLDPQSLRDDVLARLRAHAG 328 >gi|15827690|ref|NP_301953.1| hypothetical protein ML1329 [Mycobacterium leprae TN] gi|221230167|ref|YP_002503583.1| hypothetical protein MLBr_01329 [Mycobacterium leprae Br4923] gi|1731356|sp|P54076.1|PAFB_MYCLE RecName: Full=Protein pafB gi|467023|gb|AAA17208.1| B2126_C3_266 [Mycobacterium leprae] gi|4200278|emb|CAA22939.1| hypothetical protein MLCB2533.25 [Mycobacterium leprae] gi|13093241|emb|CAC31710.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933274|emb|CAR71424.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=331 Score = 515 bits (1326), Expect = 4e-144, Method: Compositional matrix adjust. Identities = 264/329 (81%), Positives = 288/329 (88%), Gaps = 2/329 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGY+TAEKIRSSVAGYSDSP+VEAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYMTAEKIRSSVAGYSDSPTVEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVG+VSAL+P+EGYRINRDAYAL PVELTPDEAAAVAVATQLWES ELITATQGALLK Sbjct 61 PLEVGKVSALDPSEGYRINRDAYALPPVELTPDEAAAVAVATQLWESQELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVD+DPLDT PV IAS++ VS LRGSED L ILLSAI S Q VQF +R SRAEPY Sbjct 121 LRAAGVDIDPLDT--PVVIASSSGVSSLRGSEDFLSILLSAIGSRQAVQFPYRPSRAEPY 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T+R VEPWGV+TE WYLVGHD DR+ATR FRLSRIG++V PIGPAGA TVP GVDLR Sbjct 179 TMRNVEPWGVITENSCWYLVGHDCDRNATRTFRLSRIGSEVAPIGPAGAVTVPDGVDLRR 238 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV+ V EV TG A VWV +GRATALR AGR AG R+LGGRDG+VIEL+I S DRLAR+ Sbjct 239 IVSDAVAEVSTGATARVWVVDGRATALRHAGRPAGVRRLGGRDGQVIELDIGSIDRLARD 298 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 I G+GADA+VL+P +LRDDVL RLRA AG Sbjct 299 IAGHGADAVVLEPDALRDDVLIRLRAHAG 327 >gi|120404416|ref|YP_954245.1| hypothetical protein Mvan_3444 [Mycobacterium vanbaalenii PYR-1] gi|119957234|gb|ABM14239.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=335 Score = 456 bits (1173), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 234/327 (72%), Positives = 267/327 (82%), Gaps = 2/327 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M SKVERL+NLVIALLSTR +ITA++IR +V GYSD S EAFSRMFERDKNELRDLGI Sbjct 1 MGISKVERLMNLVIALLSTRSFITADRIRETVFGYSDDASDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GRVS +P EGYRINR++YAL VELTPDEAAAVAVATQLWESPELITATQ ALLK Sbjct 61 PLETGRVSPSDPAEGYRINRESYALPAVELTPDEAAAVAVATQLWESPELITATQSALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG+D++ D +AI S AA+ GLRGSE+VLGILLSAIDSG+ V+F HR SR+EPY Sbjct 121 LRAAGIDIEAADDD--IAITSTAALPGLRGSEEVLGILLSAIDSGRAVRFRHRPSRSEPY 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVT++GRWYLVGHDRDRDA R FRLSRIGA VTPIG AG+ + P G+DLR Sbjct 179 MTRTVEPWGVVTDRGRWYLVGHDRDRDAVRTFRLSRIGADVTPIGDAGSVSRPDGIDLRE 238 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV + V + P QA VWVAEGRATALRR G GP+ +GGR G+ I ++I DRLARE Sbjct 239 IVKRVVGDWPATGQARVWVAEGRATALRRRGTVVGPKMVGGRAGDEITVDIGMFDRLARE 298 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQ 327 + YGADA+ L+P SLRDDV+ARLRAQ Sbjct 299 VASYGADALALEPQSLRDDVIARLRAQ 325 >gi|315444005|ref|YP_004076884.1| transcriptional regulator [Mycobacterium sp. Spyr1] gi|315262308|gb|ADT99049.1| predicted transcriptional regulator [Mycobacterium sp. Spyr1] Length=338 Score = 448 bits (1153), Expect = 5e-124, Method: Compositional matrix adjust. Identities = 232/327 (71%), Positives = 267/327 (82%), Gaps = 2/327 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MA SKVERL+NLVIALLSTR +ITA++IR +V GYS + S EAFSRMFERDKNELRDLGI Sbjct 1 MAISKVERLMNLVIALLSTRSFITADRIRETVYGYSGAASDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR S+ +P EGYRINR+AYAL VELTPDEAAAVAVATQLW+SPELITATQGALLK Sbjct 61 PLETGRASSSDPAEGYRINREAYALPAVELTPDEAAAVAVATQLWQSPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG++V+ D VAI S AA+ GLRGSE+VLGILLSAIDSG+ V FS+R +R+EPY Sbjct 121 LRAAGIEVEAPD--GDVAITSTAALPGLRGSEEVLGILLSAIDSGRAVTFSYRPARSEPY 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RT+EPWGVVT++GRWY+VGHDRDRD R FRLSRIGA V P GP G P GVDLR+ Sbjct 179 VTRTLEPWGVVTDRGRWYVVGHDRDRDDVRTFRLSRIGADVMPTGPTGVVRKPDGVDLRA 238 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA+ V E P +ATVWVA+GRATALRR G GPR +GGR GE I ++I DRLARE Sbjct 239 IVARVVGEWPAAGKATVWVADGRATALRRQGTVLGPRTVGGRSGEEISVDIGMFDRLARE 298 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQ 327 + GYGADA+VL+P SLR+DV+ARL A Sbjct 299 VAGYGADALVLEPESLREDVIARLEAH 325 >gi|145223678|ref|YP_001134356.1| hypothetical protein Mflv_3091 [Mycobacterium gilvum PYR-GCK] gi|145216164|gb|ABP45568.1| transcriptional regulator [Mycobacterium gilvum PYR-GCK] Length=359 Score = 447 bits (1149), Expect = 1e-123, Method: Compositional matrix adjust. Identities = 231/327 (71%), Positives = 267/327 (82%), Gaps = 2/327 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 +A SKVERL+NLVIALLSTR +ITA++IR +V GYS + S EAFSRMFERDKNELRDLGI Sbjct 22 VAISKVERLMNLVIALLSTRSFITADRIRETVYGYSGAASDEAFSRMFERDKNELRDLGI 81 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR S+ +P EGYRINR+AYAL VELTPDEAAAVAVATQLW+SPELITATQGALLK Sbjct 82 PLETGRASSSDPAEGYRINREAYALPAVELTPDEAAAVAVATQLWQSPELITATQGALLK 141 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG++V+ D VAI S AA+ GLRGSE+VLGILLSAIDSG+ V FS+R +R+EPY Sbjct 142 LRAAGIEVEAPD--GDVAITSTAALPGLRGSEEVLGILLSAIDSGRAVTFSYRPARSEPY 199 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RT+EPWGVVT++GRWY+VGHDRDRD R FRLSRIGA V P GP G P GVDLR+ Sbjct 200 VTRTLEPWGVVTDRGRWYVVGHDRDRDDVRTFRLSRIGADVMPTGPTGVVRKPDGVDLRA 259 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA+ V E P +ATVWVA+GRATALRR G GPR +GGR GE I ++I DRLARE Sbjct 260 IVARVVGEWPAAGKATVWVADGRATALRRQGTVLGPRTVGGRSGEEISVDIGMFDRLARE 319 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQ 327 + GYGADA+VL+P SLR+DV+ARL A Sbjct 320 VAGYGADALVLEPESLREDVIARLEAH 346 >gi|126435093|ref|YP_001070784.1| hypothetical protein Mjls_2509 [Mycobacterium sp. JLS] gi|126234893|gb|ABN98293.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=326 Score = 441 bits (1134), Expect = 7e-122, Method: Compositional matrix adjust. Identities = 237/330 (72%), Positives = 263/330 (80%), Gaps = 4/330 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERL+NLVIALLSTR +ITA++IR VAGY+DSPS EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLMNLVIALLSTRTFITADRIRQVVAGYADSPSDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GRVS +PTEGYRINRDAYAL VELT DEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLETGRVSQFDPTEGYRINRDAYALPAVELTADEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVD D VAI S A + G+RG+E+ L +L AID G+ VQF HR R+EPY Sbjct 121 LRAAGVDVDAADG---VAI-STATLPGVRGNEETLRAILQAIDDGRAVQFGHRRDRSEPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT +GRWYLVGHDRDRDA R FRLSRI VT IGP GA P +DLR Sbjct 177 TTRTVEPWGVVTHRGRWYLVGHDRDRDAPRTFRLSRIADDVTTIGPPGAVHKPDDIDLRE 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 +V + V E PTG QA VWVA+GRATALRR GP LGGR GEVI +EI D+LARE Sbjct 237 VVRRAVAEWPTGTQARVWVADGRATALRRQAVVEGPMTLGGRTGEVITVEIGMFDQLARE 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 I YGADA+ L+P +LRDD++ARL+AQA A Sbjct 297 IASYGADAVALEPQTLRDDIIARLKAQATA 326 >gi|108799439|ref|YP_639636.1| hypothetical protein Mmcs_2472 [Mycobacterium sp. MCS] gi|119868552|ref|YP_938504.1| hypothetical protein Mkms_2517 [Mycobacterium sp. KMS] gi|108769858|gb|ABG08580.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119694641|gb|ABL91714.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=326 Score = 438 bits (1127), Expect = 5e-121, Method: Compositional matrix adjust. Identities = 236/330 (72%), Positives = 262/330 (80%), Gaps = 4/330 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERL+NLVIALLSTR +ITA++IR VAGY+DSPS EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLMNLVIALLSTRTFITADRIRQVVAGYADSPSDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GRVS +PTEGYRINRDAYAL VELT DEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLETGRVSQFDPTEGYRINRDAYALPAVELTADEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVD D VAI S A + G+RG+E+ L +L AID G+ VQF HR R+EPY Sbjct 121 LRAAGVDVDAADG---VAI-STATLPGVRGNEETLRAILQAIDDGRAVQFGHRRDRSEPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT +GRWYLVGHDRDRDA R FRLSRI VT IGP GA P +DLR Sbjct 177 TTRTVEPWGVVTHRGRWYLVGHDRDRDAPRTFRLSRIADDVTTIGPPGAVHKPDDIDLRE 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 +V + V E PTG QA VWVA+GRATALRR GP GGR GEVI +EI D+LARE Sbjct 237 VVRRAVAEWPTGTQARVWVADGRATALRRQAVVEGPMTRGGRTGEVITVEIGMFDQLARE 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 I YGADA+ L+P +LRDD++ARL+AQA A Sbjct 297 IASYGADAVALEPQTLRDDIIARLKAQATA 326 >gi|116266948|gb|ABJ96320.1| putative transcriptional regulator [Mycobacterium smegmatis str. MC2 155] Length=331 Score = 434 bits (1115), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 230/328 (71%), Positives = 263/328 (81%), Gaps = 2/328 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MA SKVERL+NLVIALLSTR Y+ AEKIR++VAGY+DSPS EAFSRMFERDKNELRDLGI Sbjct 1 MAVSKVERLMNLVIALLSTRTYLPAEKIRTTVAGYADSPSDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GRVS + TEGYRINRD+YAL P+ LT DEAAAVAVATQLW+SPEL+TATQ A+LK Sbjct 61 PLETGRVSKWDSTEGYRINRDSYALPPIGLTADEAAAVAVATQLWQSPELVTATQNAVLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVD G VAIAS A + G+RGSE+VL LLSAID G+ VQF HR SR+ Y Sbjct 121 LRAAGVDVDA--DGVGVAIASTATLPGVRGSEEVLQSLLSAIDEGRAVQFEHRPSRSADY 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT +GRWYLVGHDRDR+ TR FRLSRI A PIGPAGA P V+LR Sbjct 179 TTRTVEPWGVVTHRGRWYLVGHDRDREDTRTFRLSRISAAARPIGPAGAVQKPQDVNLRD 238 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV + V E PTGE+A +W+A GRATALRR ++ PR +GGR GE I ++I + DRLARE Sbjct 239 IVRRAVAEQPTGERARIWIAGGRATALRRQAVTSTPRTIGGRAGEEITVDIGTWDRLARE 298 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQA 328 I YG+DA+ L+P SLRDDV+ RLRA A Sbjct 299 IASYGSDAVALEPSSLRDDVVERLRAHA 326 >gi|169629271|ref|YP_001702920.1| hypothetical protein MAB_2185 [Mycobacterium abscessus ATCC 19977] gi|169241238|emb|CAM62266.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=330 Score = 433 bits (1114), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 222/332 (67%), Positives = 258/332 (78%), Gaps = 2/332 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MA SKVERL+NLVI LLSTR Y+TAE+IR+SVAGYSDSPS EAFSRMFERDKNELRDLGI Sbjct 1 MAISKVERLMNLVICLLSTRTYVTAERIRTSVAGYSDSPSDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G+VS+ + TEGYRI RDAY L + LT DE+AAVAVATQLW+SPEL+TA QGAL+K Sbjct 61 PLETGKVSSFDATEGYRIRRDAYELPDITLTADESAAVAVATQLWQSPELVTAAQGALMK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP V++A+ AA+ G RGSE VL ILLSAIDSGQ VQF HR SR EPY Sbjct 121 LRAAGVDVDP--AAENVSVAAPAAMPGGRGSESVLRILLSAIDSGQAVQFGHRPSRTEPY 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGV+T++GRWYLVGHDRDRDATR FRLSRIG VT I G P G DLR+ Sbjct 179 VTRTVEPWGVITDRGRWYLVGHDRDRDATRTFRLSRIGEDVTKIEKPGTIRRPEGADLRA 238 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA V + P A VW+AEGRA LRR G R+LG RDG+++E+++ S DRL R Sbjct 239 IVAAAVGDGPVRITARVWIAEGRAQELRRMGVVVDSRRLGERDGDIVEIDVASPDRLVRS 298 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 I +GADA+ L+P +RD+V+ARL+ QAG A Sbjct 299 IASHGADAVALEPAQVRDEVVARLQEQAGVTA 330 >gi|296165179|ref|ZP_06847726.1| probable transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899368|gb|EFG78827.1| probable transcriptional regulator [Mycobacterium parascrofulaceum ATCC BAA-614] Length=263 Score = 422 bits (1085), Expect = 4e-116, Method: Compositional matrix adjust. Identities = 220/263 (84%), Positives = 234/263 (89%), Gaps = 0/263 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYI+AEKIR+SVAGY+DSP+ EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYISAEKIRTSVAGYADSPTAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGR SA +PTEGYRINRDAYAL VELT DEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRASAWDPTEGYRINRDAYALPAVELTADEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDP+D GAPVAIAS V GLRGSE+VLGILLSAIDS Q VQF HR SRAEPY Sbjct 121 LRAAGVDVDPVDIGAPVAIASPPGVPGLRGSEEVLGILLSAIDSRQAVQFPHRPSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 + RTVEPWGVVT+KGRWYLVGHDRDRDATR FRLSRIGA+V IGP GA VP GVDLR Sbjct 181 STRTVEPWGVVTQKGRWYLVGHDRDRDATRTFRLSRIGAEVRRIGPPGAVAVPEGVDLRR 240 Query 241 IVAQKVTEVPTGEQATVWVAEGR 263 IVA+ + E PTG +A VWVA+GR Sbjct 241 IVARTIAETPTGARARVWVADGR 263 >gi|333990759|ref|YP_004523373.1| hypothetical protein JDM601_2119 [Mycobacterium sp. JDM601] gi|333486727|gb|AEF36119.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=331 Score = 404 bits (1037), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 216/333 (65%), Positives = 256/333 (77%), Gaps = 3/333 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MAT+KVERL+NLVIALLSTRGY+TAE IR++V GY DSPS EAFSRMFERDKNELRDLGI Sbjct 1 MATAKVERLLNLVIALLSTRGYLTAEMIRATVIGYGDSPSDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G+ S + +GYRIN DAYAL +ELT +EAAAVAVA QLW+SP+L QGA+ K Sbjct 61 PLETGKASVFDTVDGYRINPDAYALPAIELTTEEAAAVAVAVQLWQSPQLRANAQGAVAK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 L AAGV+VDP A V +A AA+ G+ +E LG L+ A+ +GQ VQF HR S +PY Sbjct 121 LHAAGVEVDP--ARADVLVAPPAALPGIHRAEPALGALMDAVQAGQAVQFGHRPSPVDPY 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVT GRWYLVGHDRDRDA R FR+SRI +VTPIG G+ T P GVDLR+ Sbjct 179 VTRTVEPWGVVTHGGRWYLVGHDRDRDAVRTFRMSRIADEVTPIGSPGSVTRPDGVDLRA 238 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA+ V E PTG QA +WVA+GRA ALRRAG G + L GRDG+++ ++I + DRLAR+ Sbjct 239 IVAEAVGEAPTGLQARIWVADGRAVALRRAGAVLGRQALAGRDGDIVGVDIGTHDRLARD 298 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQA-GALA 332 I G+GADA+VL P SLRDDV+ARL A A G LA Sbjct 299 IAGHGADAVVLDPPSLRDDVVARLTASARGVLA 331 >gi|336461984|gb|EGO40833.1| hypothetical protein MAPs_24820 [Mycobacterium avium subsp. paratuberculosis S397] Length=211 Score = 376 bits (965), Expect = 3e-102, Method: Compositional matrix adjust. Identities = 189/210 (90%), Positives = 196/210 (94%), Gaps = 0/210 (0%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYS+S S EAFSRMFERDKNELRDLGI Sbjct 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSESVSAEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVGRVS ++PTEGYRINRDAYAL+PV+LTPDEAAAVAVATQLWESPELITATQGALLK Sbjct 61 PLEVGRVSPMDPTEGYRINRDAYALAPVDLTPDEAAAVAVATQLWESPELITATQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVDPLD APVAIAS A V GLRGSE+VLGILLSAIDS Q VQF HR SRAEPY Sbjct 121 LRAAGVDVDPLDDAAPVAIASPAGVPGLRGSEEVLGILLSAIDSRQAVQFPHRPSRAEPY 180 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATR 210 RTVEPWGVVT+KGRWYLVGHDRDRDATR Sbjct 181 ATRTVEPWGVVTQKGRWYLVGHDRDRDATR 210 >gi|111017859|ref|YP_700831.1| hypothetical protein RHA1_ro00840 [Rhodococcus jostii RHA1] gi|110817389|gb|ABG92673.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=331 Score = 374 bits (961), Expect = 9e-102, Method: Compositional matrix adjust. Identities = 197/329 (60%), Positives = 233/329 (71%), Gaps = 4/329 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M TSK+ERL+NLVI LLSTR ++TAEKIR SVAGY+DS S EAFSRMFERDKNELRDLG+ Sbjct 1 MPTSKIERLMNLVICLLSTRQFLTAEKIRESVAGYADSASDEAFSRMFERDKNELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G+ S EGYRINR+AY L ++L+ +E+AAVAVA QLWESPEL +A QGALLK Sbjct 61 PLETGQASRFSTVEGYRINRNAYELPDIDLSQEESAAVAVAVQLWESPELTSAAQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VDP P+ A RGSE LG LL+A+D+G+ V F HR + EPY Sbjct 121 LRAAGVQVDPDSAATPITAVPART----RGSEPALGKLLAAVDAGRAVHFPHRGALNEPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT GRWYLVGHD DR A R FRLSRIG VT GP+G PAGVDLR Sbjct 177 TERTVEPWGVVTAHGRWYLVGHDVDRGAVRTFRLSRIGDDVTEFGPSGVVHKPAGVDLRE 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV + ATVWVAEGRA LRR +A +++ R G ++ + +RS D +AR Sbjct 237 IVDRVTGSGEVTGTATVWVAEGRAQELRRLATTAEAKRVNERAGTLLGIPVRSRDWIARL 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 + G+GADA+VL P LR DVL +L+ AG Sbjct 297 VAGHGADALVLDPPELRHDVLTKLKDAAG 325 >gi|229493602|ref|ZP_04387387.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319563|gb|EEN85399.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=336 Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust. Identities = 204/332 (62%), Positives = 240/332 (73%), Gaps = 8/332 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSK+ERL+NLVIALLSTR ++TAEKIR SVAGY+DS + EAFSRMFERDKNELRDLG+ Sbjct 1 MATSKIERLMNLVIALLSTRQFLTAEKIRDSVAGYNDSANYEAFSRMFERDKNELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G EGYRINR+AY L V+LT +E+AAVAVA QLWESPELI+A Q ALLK Sbjct 61 PLETGLAGRFSTVEGYRINRNAYELPDVDLTSEESAAVAVAVQLWESPELISAAQSALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VD + APV A RGSE LG LL+A+D+G+ V F HR + EP+ Sbjct 121 LRAAGVQVDSEVSAAPVTAIPART----RGSEPALGKLLAAVDAGRAVHFQHRGALNEPF 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT G+WYLVGHD DRDA R FRLSRIG V GPAG+ P GVDLR Sbjct 177 TERTVEPWGVVTHNGKWYLVGHDVDRDAVRTFRLSRIGDDVREFGPAGSVHKPEGVDLRE 236 Query 241 IVAQKVT--EVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLA 298 +V +VT V TG ATVWVA+GRA LRR S+ R+L RDG V+ + +RS + A Sbjct 237 VV-DRVTGSGVVTG-TATVWVADGRAHELRRLATSSSERRLTDRDGSVLAIPVRSWEWTA 294 Query 299 REITGYGADAIVLQPGSLRDDVLARLRAQAGA 330 R I G+G DA+VL P LR +V+A+LRA A + Sbjct 295 RLIAGHGLDALVLDPPDLRAEVVAKLRAAAAS 326 >gi|226359992|ref|YP_002777770.1| proteasome accessory factor B [Rhodococcus opacus B4] gi|226238477|dbj|BAH48825.1| proteasome accessory factor B [Rhodococcus opacus B4] Length=330 Score = 373 bits (957), Expect = 3e-101, Method: Compositional matrix adjust. Identities = 197/329 (60%), Positives = 230/329 (70%), Gaps = 4/329 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M TSK+ERL+NLVI LLSTR ++TAEKIR SVAGY+DS S EAFSRMFERDKNELRDLG+ Sbjct 1 MPTSKIERLMNLVICLLSTRQFLTAEKIRESVAGYADSASDEAFSRMFERDKNELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G+ S EGYRINR+AY L ++L +E+AAVAVA QLWESPEL +A QGALLK Sbjct 61 PLETGQASRFSTVEGYRINRNAYELPDIDLDQEESAAVAVAVQLWESPELTSAAQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VDP P+ A RGSE LG LL+A+D+G+ V F HR + EPY Sbjct 121 LRAAGVQVDPDSAATPITAVPART----RGSEPALGKLLAAVDAGRAVHFPHRGALNEPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT GRWYLVGHD DR A R FRLSRIG VT GP+G PA VDLR Sbjct 177 TERTVEPWGVVTAHGRWYLVGHDVDRGAVRTFRLSRIGDDVTEFGPSGVVHKPADVDLRD 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV + ATVWVAEGRA LRR +A +++ R G V+ + I S D +AR Sbjct 237 IVDRVTGSGEVTGTATVWVAEGRAQELRRLATTAEEKRVNERSGTVLRIPIHSRDWIARL 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 + G+GADA+VL P LR DVL +L+ AG Sbjct 297 VAGHGADALVLDPPELRHDVLTKLKDAAG 325 >gi|226306657|ref|YP_002766617.1| proteasome accessory factor B [Rhodococcus erythropolis PR4] gi|226185774|dbj|BAH33878.1| proteasome accessory factor B [Rhodococcus erythropolis PR4] Length=337 Score = 372 bits (956), Expect = 3e-101, Method: Compositional matrix adjust. Identities = 205/334 (62%), Positives = 241/334 (73%), Gaps = 8/334 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATSK+ERL+NLVIALLSTR ++TAEKIR SVAGY+DS + EAFSRMFERDKNELRDLG+ Sbjct 1 MATSKIERLMNLVIALLSTRQFLTAEKIRDSVAGYNDSANYEAFSRMFERDKNELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G EGYRINR+AY L V+LT +E+AAVAVA QLWESPELI+A Q ALLK Sbjct 61 PLETGLAGRFSTVEGYRINRNAYELPDVDLTSEESAAVAVAVQLWESPELISAAQSALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VD + APV A RGSE LG LL+A+D+G+ V F HR + EP+ Sbjct 121 LRAAGVQVDSEVSAAPVTAIPART----RGSEPALGKLLAAVDAGRAVHFQHRGALNEPF 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT G+WYLVGHD DRDA R FRLSRIG V GPAG+ P GVDLR Sbjct 177 TERTVEPWGVVTHNGKWYLVGHDVDRDAVRTFRLSRIGDDVREFGPAGSVHKPEGVDLRE 236 Query 241 IVAQKVT--EVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLA 298 +V +VT V TG ATVWVA+GRA LRR S+ R+L RDG V+ + +RS + A Sbjct 237 VV-DRVTGSGVVTG-IATVWVADGRAHELRRLATSSSDRRLTDRDGSVLAIPVRSWEWTA 294 Query 299 REITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 R I G+G DA+VL P LR +V+A+LRA A + A Sbjct 295 RLIAGHGLDALVLDPPDLRAEVVAKLRAAAASPA 328 >gi|54025136|ref|YP_119378.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54016644|dbj|BAD58014.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length=331 Score = 372 bits (954), Expect = 6e-101, Method: Compositional matrix adjust. Identities = 209/328 (64%), Positives = 242/328 (74%), Gaps = 4/328 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MA SKVERL+NLVIALLSTR ++TAE+IR SVAGY DS S EAFSRMFERDKNELRDLGI Sbjct 1 MAISKVERLMNLVIALLSTRQFLTAERIRESVAGYEDSASDEAFSRMFERDKNELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLEVG VS EGYRIN DAYAL ++LT +EAAAVAVA QLWESPEL A +GA+LK Sbjct 61 PLEVGPVSRFSTVEGYRINPDAYALPDIDLTDEEAAAVAVAVQLWESPELAAAAEGAVLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG+ V+ T APVA + A + RGSE VLG LL+AID+GQ V+F HR + EP+ Sbjct 121 LRAAGIHVE---TEAPVA-SVPAVPARTRGSEPVLGKLLAAIDAGQAVRFEHRGAANEPF 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 +R VEPWGVVT +GRWYLVGHDRDRDA R FRLSRI VTP GP A P GVDLR+ Sbjct 177 RMRDVEPWGVVTHRGRWYLVGHDRDRDAVRSFRLSRIADDVTPYGPRNAVHKPEGVDLRA 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IVA+ + P ATVWVA+GR +RR G R + GR G V+E+ +RS D +AR Sbjct 237 IVARVTSTSPVTGTATVWVADGRGRDIRRLGTVRESRVVAGRPGVVLEVPVRSRDWIARL 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQA 328 +TG G DA+VL P LR DV+ARLRA A Sbjct 297 VTGLGQDALVLAPADLRADVMARLRAVA 324 >gi|1666182|emb|CAB04763.1| ORF10(1) [Rhodococcus erythropolis] Length=330 Score = 372 bits (954), Expect = 7e-101, Method: Compositional matrix adjust. Identities = 195/329 (60%), Positives = 230/329 (70%), Gaps = 4/329 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M TSK+ERL+NLVI LLSTR ++TAEKIR SVAGY+DS S EAFSRMFERDKNELRDLG+ Sbjct 1 MPTSKIERLMNLVICLLSTRQFLTAEKIRESVAGYADSASDEAFSRMFERDKNELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G+ S EGYRINR+AY L ++L +E+AAVAVA QLWESPEL +A QGALLK Sbjct 61 PLETGQASRFSTVEGYRINRNAYELPDIDLNQEESAAVAVAVQLWESPELTSAAQGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VDP P+ A RGSE LG LL+A+D+G+ V F HR + EPY Sbjct 121 LRAAGVQVDPDSAATPITAVPART----RGSEPALGKLLAAVDAGRAVHFPHRGALNEPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RTVEPWGVVT GRWYLVGHD DR A R FRLSRIG VT GP+G PAGVDLR Sbjct 177 TERTVEPWGVVTAHGRWYLVGHDVDRGAVRTFRLSRIGDDVTEFGPSGVVHKPAGVDLRD 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV + ATVWVA GRA LRR +A +++ R G V+ + + S D +AR Sbjct 237 IVDRVTGSGEVTGTATVWVAAGRAQELRRLATTAEEKRVNERSGSVLRIPVHSRDWIARL 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 + G+GADA+VL P LR +VL +L+ AG Sbjct 297 VAGHGADALVLDPPELRHEVLTKLKDAAG 325 >gi|325676824|ref|ZP_08156497.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325552372|gb|EGD22061.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length=337 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 195/329 (60%), Positives = 223/329 (68%), Gaps = 4/329 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MAT+KVERL+NLVI LLSTR ++TAEKIR SV GY DSPS EAF+RMFERDK+ELRDLGI Sbjct 1 MATTKVERLMNLVICLLSTRQFLTAEKIRESVVGYHDSPSDEAFNRMFERDKSELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G + EGYRINR AY L V+L EAAAVAVA +LW SPE+++ +Q A++K Sbjct 61 PLETGPANRFSTVEGYRINRTAYELPEVDLDSGEAAAVAVAARLWGSPEMMSTSQSAMMK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VD PVA A RGSE L LL AID+G+ V F HRS+ +PY Sbjct 121 LRAAGVQVDADVDSVPVAAVPART----RGSESALRQLLEAIDAGRRVTFRHRSAPTDPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVT GRWYLVGHD DRDATR FRLSRI V +GPA A PA DLR Sbjct 177 IERTVEPWGVVTLHGRWYLVGHDVDRDATRTFRLSRISEPVAAVGPANAVRKPADADLRG 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV ATVWVA GRA LRR G R+LGGR G V++L +RS AR Sbjct 237 IVDAVTGAGSATGTATVWVAAGRAYELRRLGTVREERELGGRAGVVLDLPVRSWGWTARL 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 I G+G+DA+VL P SLR DV +LR AG Sbjct 297 IAGHGSDALVLAPDSLRADVKEKLRFAAG 325 >gi|312139726|ref|YP_004007062.1| transcriptional regulator [Rhodococcus equi 103S] gi|311889065|emb|CBH48378.1| putative transcriptional regulator [Rhodococcus equi 103S] Length=337 Score = 336 bits (862), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 195/329 (60%), Positives = 223/329 (68%), Gaps = 4/329 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MAT+KVERL+NLVI LLSTR ++TAEKIR SV GY DSPS EAF+RMFERDK+ELRDLGI Sbjct 1 MATTKVERLMNLVICLLSTRQFLTAEKIRESVVGYHDSPSDEAFNRMFERDKSELRDLGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE G + EGYRINR AY L V+L EAAAVAVA +LW SPE+++ +Q A++K Sbjct 61 PLETGPANRFSTVEGYRINRTAYELPEVDLDSGEAAAVAVAARLWGSPEMMSTSQSAMMK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV VD PVA A RGSE L LL AID+G+ V F HRS+ +PY Sbjct 121 LRAAGVQVDADVDSVPVAAVPART----RGSESALRQLLEAIDAGRRVTFRHRSAPTDPY 176 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVVT GRWYLVGHD DRDATR FRLSRI V +GPA A PA DLR Sbjct 177 IERTVEPWGVVTLHGRWYLVGHDVDRDATRTFRLSRISEPVAAVGPANAVRKPADADLRG 236 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV ATVWVA GRA LRR G R+LGGR G V++L +RS AR Sbjct 237 IVDAVTGAGSATGTATVWVAAGRAYELRRLGTVREERELGGRAGVVLDLPVRSWGWTARL 296 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 I G+G+DA+VL P SLR DV +LR AG Sbjct 297 IAGHGSDALVLAPDSLRADVKEKLRFAAG 325 >gi|333919681|ref|YP_004493262.1| proteasome accessory factor B [Amycolicicoccus subflavus DQS3-9A1] gi|333481902|gb|AEF40462.1| Proteasome accessory factor B [Amycolicicoccus subflavus DQS3-9A1] Length=332 Score = 336 bits (861), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 184/325 (57%), Positives = 227/325 (70%), Gaps = 7/325 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+ ++ ERLVNLVIALLSTR ++TAE+IR +V GY D S +A++RMFERDK ELRDLG+ Sbjct 1 MSITRAERLVNLVIALLSTRQFLTAEQIRETVMGYPDDASEDAYTRMFERDKAELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR S PTEGYRINRDAY L V+LT EAAAVAVA LW+SPEL +ATQ ALLK Sbjct 61 PLETGRASWHSPTEGYRINRDAYELPDVQLTHGEAAAVAVAAHLWQSPELHSATQSALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRA GV VD A+ AA RGSE V+ LL+AID G+ V+FSHR EPY Sbjct 121 LRAGGVTVDD-------AVPVAAMPLRTRGSESVMTKLLNAIDEGRAVRFSHRRQPGEPY 173 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWG+ T G+WYLVG+D ++ATR FRLSRI VT +GPA A + PA D+R Sbjct 174 ASRTVEPWGIATWHGKWYLVGYDSAKEATRTFRLSRIADDVTAVGPAEAVSKPADADVRE 233 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 IV Q V+ +G A VWVAEGRA LRR SA P+++ GR G ++EL + S + LAR Sbjct 234 IVKQAVSSTVSGGAARVWVAEGRAHELRRIASSARPQEMNGRAGSILELPVSSWEWLARV 293 Query 301 ITGYGADAIVLQPGSLRDDVLARLR 325 + G+GADA+ +P LR+ V+ L+ Sbjct 294 VAGHGADALADEPRQLREQVIELLQ 318 >gi|262202392|ref|YP_003273600.1| transcriptional regulator [Gordonia bronchialis DSM 43247] gi|262085739|gb|ACY21707.1| transcriptional regulator protein-like protein [Gordonia bronchialis DSM 43247] Length=331 Score = 303 bits (776), Expect = 3e-80, Method: Compositional matrix adjust. Identities = 180/332 (55%), Positives = 223/332 (68%), Gaps = 8/332 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDS-PSVEAFSRMFERDKNELRDLG 59 MAT+KVERL+NLVI LL TR Y+TAE IR++VAGYSD S+EAF+RMFERDK ELRDLG Sbjct 1 MATAKVERLLNLVICLLHTRQYVTAEYIRANVAGYSDDGQSLEAFNRMFERDKTELRDLG 60 Query 60 IPLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALL 119 IPL GR EGYRI+R +Y L V L DEAA +A+A LW++PE+ T +Q A+L Sbjct 61 IPLVTGRSPMSGGAEGYRIDRGSYELPEVSLDADEAATIAMAAALWDTPEVSTLSQTAIL 120 Query 120 KLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEP 179 KLRAAG P+ + + I++ + + GSE V+G LL+AID+GQ V+F+HRS A Sbjct 121 KLRAAGF---PVRSEDDLGISTGGSARSM-GSEVVIGALLTAIDAGQAVEFTHRSGSASA 176 Query 180 YTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLR 239 T RT+EPWGVVT +GRWY+VGHDRDRDATR FRLSRI + + IG GA TVPAG DL+ Sbjct 177 PTTRTLEPWGVVTHRGRWYVVGHDRDRDATRTFRLSRI-SDLHAIGEPGAVTVPAGTDLQ 235 Query 240 SIVAQKVTEV--PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 IVA V G A +WVA RA LRR S+ G G+V+ + IRS L Sbjct 236 GIVAAAVDAAAGSDGRTARIWVAADRAAGLRRLAVSSEAGDFDGEAGDVLTIGIRSLSTL 295 Query 298 AREITGYGADAIVLQPGSLRDDVLARLRAQAG 329 AR + G G DA+VL+P LRD V+A L G Sbjct 296 ARMVLGAGRDAVVLEPPELRDQVVAALDCLVG 327 >gi|256376375|ref|YP_003100035.1| transcriptional regulator protein [Actinosynnema mirum DSM 43827] gi|255920678|gb|ACU36189.1| putative transcriptional regulator protein [Actinosynnema mirum DSM 43827] Length=327 Score = 301 bits (772), Expect = 8e-80, Method: Compositional matrix adjust. Identities = 169/324 (53%), Positives = 209/324 (65%), Gaps = 8/324 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MAT++ ERLVNLV+ LLSTR Y+TAE+IR+ V GY+D+ + EAF RMFERDK+ELRDLG+ Sbjct 1 MATARAERLVNLVLCLLSTRQYLTAERIRAIVPGYTDAATDEAFFRMFERDKSELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR A + +GYRI R Y L ++L PDEAAAVA+A +LW+SP+L A GALLK Sbjct 61 PLETGRSGAFDSVDGYRIARRDYELGDIDLEPDEAAAVALAGRLWDSPQLTGAAHGALLK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVD D PV +R +E LL+A +G+VV+F +R Sbjct 121 LRAAGVDVDQ-DVHVPVE-------PRVRATEPAFPPLLAASQTGRVVEFDYRRPSPVEV 172 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVV +GRWYLVGHDRDR ATR FRLSRI V +G GA T P VDL Sbjct 173 RTRTVEPWGVVAWRGRWYLVGHDRDRGATRCFRLSRIVGDVRTLGKPGAVTRPDDVDLLG 232 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 VA+ A +WVA+GR LRR R G R+L G G+++E+E+ D A Sbjct 233 FVARTQPSPQPPAPAKLWVAKGRGHGLRRRARVVGERELAGVPGDLLEIELNFPDSAAGW 292 Query 301 ITGYGADAIVLQPGSLRDDVLARL 324 I G+G DA+VL+P L V RL Sbjct 293 IAGFGPDAVVLEPEVLAKSVRERL 316 >gi|296393802|ref|YP_003658686.1| hypothetical protein Srot_1391 [Segniliparus rotundus DSM 44985] gi|296180949|gb|ADG97855.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length=332 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 167/330 (51%), Positives = 217/330 (66%), Gaps = 5/330 (1%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MAT KVERL+NLVIALLS RGY++AE+IRSSV+GYSD+PS +AF RMFERDK ELRDLG+ Sbjct 1 MATPKVERLINLVIALLSARGYVSAEQIRSSVSGYSDTPSEDAFERMFERDKAELRDLGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 P+E G++S GYRI RD Y L + TP+EA AVAVA LW++ EL AL+K Sbjct 61 PIETGKISRTYGGVGYRIRRDVYELPEIVFTPEEAGAVAVAGTLWQTKELAGTVDRALVK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG + P D+ P+ G RGSE+V L++A +SG+ V F +R+ +P+ Sbjct 121 LRAAGSPISPSDS--PMVDVVWQTEPGSRGSEEVFTALVAAAESGRRVAFDYRADPTQPF 178 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 T RT+EPWGVVT +GRWY++G D DRDA R FRLSR+ V G A ++ LR+ Sbjct 179 TTRTLEPWGVVTHRGRWYVLGWDIDRDAPRTFRLSRVYGAVQDKGRAETDSLYTPEQLRA 238 Query 241 IVAQKVTE--VPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLA 298 V + V P G +A VW G A LRR G G R+L G G+++E+ +RS LA Sbjct 239 KVVEIVDPPAAPRG-KALVWAERGEAEGLRRLGSVVGERELAGARGDLVEIPLRSVRTLA 297 Query 299 REITGYGADAIVLQPGSLRDDVLARLRAQA 328 R + G+ A A+ L+P LRD+V+ARLRA A Sbjct 298 RVVAGFAAHAVALEPEQLRDEVVARLRAVA 327 >gi|331697094|ref|YP_004333333.1| putative transcriptional regulator protein [Pseudonocardia dioxanivorans CB1190] gi|326951783|gb|AEA25480.1| putative transcriptional regulator protein [Pseudonocardia dioxanivorans CB1190] Length=346 Score = 297 bits (760), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 166/317 (53%), Positives = 214/317 (68%), Gaps = 10/317 (3%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 ++ ++ ERLVNLV+ LLSTR Y++AE+IR +V GY+D+PS EAF RMFERDK ELR+LGI Sbjct 12 VSAARAERLVNLVLCLLSTRQYLSAERIRDTVPGYADAPSDEAFFRMFERDKTELRELGI 71 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR S + T+GYRI R Y L ++L +EAAAVA+A +LW+SPEL A GAL+K Sbjct 72 PLETGRRSTFDTTDGYRIARQDYELGDIDLDTEEAAAVALAARLWDSPELAGAAHGALVK 131 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGVDVD ++G PV +R ++ L++A+ +G+VV F HR Sbjct 132 LRAAGVDVD--ESGGPVQ-------PRVRATDAAFAPLMAAVQAGRVVTFDHRRGGPTGE 182 Query 181 TV-RTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLR 239 V RTVEPWG+V+ +GRWYLVGHDRDRD R FR+SRI VT +GPAGA TVP GVDL Sbjct 183 VVRRTVEPWGIVSWRGRWYLVGHDRDRDDVRSFRISRILEPVTALGPAGAVTVPPGVDLL 242 Query 240 SIVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAR 299 + V P A +WV+ G A LRR GR R+L G+ GE +ELE+RS D ++R Sbjct 243 AKVKAGFAAPPVAGTARIWVSAGHAHGLRRLGRVVAARELDGQPGEELELELRSVDIVSR 302 Query 300 EITGYGADAIVLQPGSL 316 + G+G D +VL P L Sbjct 303 WLAGHGPDVVVLDPPEL 319 >gi|343927934|ref|ZP_08767400.1| proteasome accessory factor B [Gordonia alkanivorans NBRC 16433] gi|343762157|dbj|GAA14326.1| proteasome accessory factor B [Gordonia alkanivorans NBRC 16433] Length=330 Score = 296 bits (758), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 179/335 (54%), Positives = 216/335 (65%), Gaps = 8/335 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSD-SPSVEAFSRMFERDKNELRDLG 59 MAT KVERL+NLVI LL T+ Y+TA+ IR +VAGY D S EAF+RMFERDKNELRDLG Sbjct 1 MATPKVERLLNLVICLLWTKQYVTADYIRRNVAGYQDGDKSDEAFNRMFERDKNELRDLG 60 Query 60 IPLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALL 119 IPL GR EGYRI+RD Y L + L DEAAA+A+A LW++PE+ T +Q A+L Sbjct 61 IPLVTGRSPMAAGAEGYRIDRDTYELPEISLDSDEAAAIAMAAALWDTPEVSTLSQTAIL 120 Query 120 KLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEP 179 KLRAAG+DV D A S ++ GSE V+ LL AI + V+F+HRSS Sbjct 121 KLRAAGLDVRSEDDLGFTAGGSTRSM----GSEQVIAGLLGAIQVKRAVEFTHRSSATAT 176 Query 180 YTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLR 239 VR VEPWGVV+ GRWY+VGHD DR ATR FRLSRI + VTP+GPA A VP G DL+ Sbjct 177 PAVRRVEPWGVVSHHGRWYVVGHDLDRAATRTFRLSRI-STVTPVGPADAVDVPVGTDLQ 235 Query 240 SIVAQKVTEV--PTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 IV+ V G A +WVA GRA LRRA ++ P L G G+V+ L+I S + Sbjct 236 QIVSAAVDSAAGTDGRTARIWVAAGRAAGLRRAATTSEPADLDGEAGDVLTLDIHSLSAV 295 Query 298 AREITGYGADAIVLQPGSLRDDVLARLRAQAGALA 332 AR G G DA+VL P LRD V+A L AG A Sbjct 296 ARMALGVGRDAVVLDPPELRDLVIAGLDRLAGVSA 330 >gi|300786762|ref|YP_003767053.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|299796276|gb|ADJ46651.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei U32] gi|340528246|gb|AEK43451.1| HTH type 11 transcriptional regulator [Amycolatopsis mediterranei S699] Length=327 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 162/327 (50%), Positives = 211/327 (65%), Gaps = 10/327 (3%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+T++ ERLVNLV+ALLSTR Y+TAEKIR V GY D+ S EA+ RMFERDK ELR+LGI Sbjct 1 MSTARAERLVNLVLALLSTRQYLTAEKIRGIVPGYGDAASDEAYFRMFERDKTELRELGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR SA + EGYRI R Y L ++L PDEAAAVA+A++LW+SPEL QGAL+K Sbjct 61 PLETGRNSAFDAIEGYRIARRDYELGEIDLAPDEAAAVALASRLWDSPELTGQAQGALVK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG++V D AP + +E G LL+A+ +GQ V+F +R S + Sbjct 121 LRAAGLEV---DDQAPTVVEPRVR------AEPAFGPLLAAVQNGQAVRFEYRRSGSPER 171 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 +RT+EPWGVV+ + RWY+VGHDRDR ATR FRLSR+ QV P+G G P GV+L Sbjct 172 IMRTLEPWGVVSWRARWYVVGHDRDRGATRCFRLSRVTGQVRPVGKPGEVRRPEGVNLLK 231 Query 241 IV-AQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAR 299 +V A +E A VWVA+GRA +RR G G + G +G+++E+ + + A Sbjct 232 LVTATGESEPAPVTTARVWVADGRAAGVRRRGTVVGRASVDGEEGDLVEIGLLYPESAAD 291 Query 300 EITGYGADAIVLQPGSLRDDVLARLRA 326 I+ G D +V +P L V RL A Sbjct 292 WISAQGPDVVVFEPDVLAKSVQDRLEA 318 >gi|134098828|ref|YP_001104489.1| transcriptional regulator-like [Saccharopolyspora erythraea NRRL 2338] gi|133911451|emb|CAM01564.1| transcriptional regulator-like [Saccharopolyspora erythraea NRRL 2338] Length=327 Score = 285 bits (730), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 167/316 (53%), Positives = 205/316 (65%), Gaps = 8/316 (2%) Query 5 KVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEV 64 + ERLVNLV+ LLSTR ++TAE+IR V GY+D+P+ EAF R FERDK ELRDLGIPLE Sbjct 2 RAERLVNLVLCLLSTRQFLTAERIRGIVPGYADAPNDEAFFRTFERDKAELRDLGIPLET 61 Query 65 GRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAA 124 GR SA + T+GYRI R Y L V+L PDEAAAVA+A +LW+SPEL A +GALLKLRAA Sbjct 62 GRNSAFDLTDGYRIARRDYELGDVDLLPDEAAAVALAVRLWDSPELTGAARGALLKLRAA 121 Query 125 GVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPYTVRT 184 GVDVD ASAA +R SE LL+A+ SG+VV+F +R ++ T RT Sbjct 122 GVDVD--------ERASAAVEPKVRTSEPAFAPLLAAVQSGRVVRFDYRRPSSQDATRRT 173 Query 185 VEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRSIVAQ 244 VEPWGVV+ +GRWYLVGHDRDR A R FRLSR+ V GP P VDL +VA Sbjct 174 VEPWGVVSWRGRWYLVGHDRDRQAERCFRLSRVVGAVEATGPRDVVQRPPDVDLLRVVAG 233 Query 245 KVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGY 304 E P A +W+ GRA LRR +L G G+V+EL++ + A I GY Sbjct 234 GERETPPITPARLWIEHGRAQGLRRRSTVVDAMELDGVPGDVVELDLVYPESAATWIAGY 293 Query 305 GADAIVLQPGSLRDDV 320 G D +VL+P +LR V Sbjct 294 GPDVVVLEPDTLRKTV 309 >gi|302527214|ref|ZP_07279556.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302436109|gb|EFL07925.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=330 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 159/328 (49%), Positives = 210/328 (65%), Gaps = 11/328 (3%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+T++ ERLVNLV+ALLSTR Y+TAE+IR V GY+D+ S +AF R FERDK ELR+LGI Sbjct 1 MSTARAERLVNLVLALLSTRQYLTAERIRGIVPGYADAASDDAFFRTFERDKTELRELGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR S +P EGYRI R Y L ++L PDEAAAV +A +LW+SPEL QGAL+K Sbjct 61 PLETGRNSVFDPVEGYRIARRDYELGEIDLAPDEAAAVGLAVRLWDSPELTGQAQGALVK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV+V D AP I +E +L+A+ +GQ V+F +R S + Sbjct 121 LRAAGVEV---DDQAPTVIEPRVR------AEPAFAPMLAAVQAGQAVRFEYRRSGSPER 171 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 +RT+EPWGVV+ + RWY+VGHDRDRDA R FRLSR+ +V IG GA P GV+L Sbjct 172 RIRTLEPWGVVSWRARWYVVGHDRDRDAPRCFRLSRVTGKVAAIGKPGAVVRPEGVNLMQ 231 Query 241 IVA-QKVTEVPTG-EQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLA 298 +V+ +E P+ A +W+A+GRA +RR G G + G +G+V+E+ + + A Sbjct 232 LVSVTGGSEDPSPVTTARLWIADGRAAGVRRRGDVVGRETIAGEEGDVVEIGLYFPESAA 291 Query 299 REITGYGADAIVLQPGSLRDDVLARLRA 326 I G D +VL+P L V RL A Sbjct 292 DWIAAQGPDVLVLEPDVLAKSVQHRLEA 319 >gi|291005814|ref|ZP_06563787.1| transcriptional regulator-like protein [Saccharopolyspora erythraea NRRL 2338] Length=322 Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 164/312 (53%), Positives = 202/312 (65%), Gaps = 8/312 (2%) Query 9 LVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEVGRVS 68 +VNLV+ LLSTR ++TAE+IR V GY+D+P+ EAF R FERDK ELRDLGIPLE GR S Sbjct 1 MVNLVLCLLSTRQFLTAERIRGIVPGYADAPNDEAFFRTFERDKAELRDLGIPLETGRNS 60 Query 69 ALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAAGVDV 128 A + T+GYRI R Y L V+L PDEAAAVA+A +LW+SPEL A +GALLKLRAAGVDV Sbjct 61 AFDLTDGYRIARRDYELGDVDLLPDEAAAVALAVRLWDSPELTGAARGALLKLRAAGVDV 120 Query 129 DPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPYTVRTVEPW 188 D ASAA +R SE LL+A+ SG+VV+F +R ++ T RTVEPW Sbjct 121 D--------ERASAAVEPKVRTSEPAFAPLLAAVQSGRVVRFDYRRPSSQDATRRTVEPW 172 Query 189 GVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRSIVAQKVTE 248 GVV+ +GRWYLVGHDRDR A R FRLSR+ V GP P VDL +VA E Sbjct 173 GVVSWRGRWYLVGHDRDRQAERCFRLSRVVGAVEATGPRDVVQRPPDVDLLRVVAGGERE 232 Query 249 VPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGYGADA 308 P A +W+ GRA LRR +L G G+V+EL++ + A I GYG D Sbjct 233 TPPITPARLWIEHGRAQGLRRRSTVVDAMELDGVPGDVVELDLVYPESAATWIAGYGPDV 292 Query 309 IVLQPGSLRDDV 320 +VL+P +LR V Sbjct 293 VVLEPDTLRKTV 304 >gi|257056201|ref|YP_003134033.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256586073|gb|ACU97206.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length=327 Score = 276 bits (707), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 164/326 (51%), Positives = 210/326 (65%), Gaps = 17/326 (5%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+T++ ERLVNLV+ALLSTR Y+TAE+IR V GY+D+PS EAF RMFERDK ELR+LGI Sbjct 1 MSTARAERLVNLVLALLSTRQYLTAERIRGIVPGYADAPSDEAFGRMFERDKAELRELGI 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 PLE GR S + +GYRI R Y L +EL PDEAAAVA+A +LW+SPEL + AL+K Sbjct 61 PLETGRNSVFDTVDGYRIARRDYELGDIELAPDEAAAVALAARLWDSPELTGPARRALVK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAGV+VD ++A V +E LLSA+ GQVV+F +R + + Sbjct 121 LRAAGVEVDE---------SAATPVEPRVHAEPAFASLLSAVQRGQVVRFEYRRAYSPER 171 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 R VEPWG+V+ + RWYLVGHDRDRDA R FRLSRI V +G GA + P VDL Sbjct 172 RSRLVEPWGMVSWRARWYLVGHDRDRDAPRCFRLSRITGPVRTVGKPGAVSRPDDVDLVE 231 Query 241 IVAQKVTEVPTGE---QATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRL 297 VA + E +A +W+AEGRA +RR R G R + DG+V+EL++ +R Sbjct 232 FVAGIGDDERNSEPVMRARLWLAEGRAVGIRRQARVVGRRTVADVDGDVVELDLWFPERA 291 Query 298 AREITGYGADAIVLQPGSLRDDVLAR 323 A I +G D +VL+P DVLA+ Sbjct 292 ADWIAEHGPDVLVLEP-----DVLAK 312 >gi|317508590|ref|ZP_07966251.1| hypothetical protein HMPREF9336_02623 [Segniliparus rugosus ATCC BAA-974] gi|316253134|gb|EFV12543.1| hypothetical protein HMPREF9336_02623 [Segniliparus rugosus ATCC BAA-974] Length=358 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 154/312 (50%), Positives = 203/312 (66%), Gaps = 2/312 (0%) Query 13 VIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGIPLEVGRVSALEP 72 +IALLS RGY++AE+IRSSV+GYS++PS EAF RMFERDK ELR+LG+P+E G++S Sbjct 1 MIALLSARGYVSAEQIRSSVSGYSEAPSEEAFERMFERDKAELRELGVPIETGKISRTYG 60 Query 73 TEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKLRAAGVDVDPLD 132 GYRI RDAY L + TP+EAAAVAVA LW++ EL AL+KLRAAG + P D Sbjct 61 GVGYRIRRDAYELPEIVFTPEEAAAVAVAGALWQTKELAGTVDRALVKLRAAGSPISPSD 120 Query 133 TGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPYTVRTVEPWGVVT 192 APV G RGSE+V L+ A ++G+ V+F +R+ P T RT+EPWGVVT Sbjct 121 --APVVDVVWQVEPGSRGSEEVFTALVGAAEAGRRVRFDYRADPTRPLTTRTLEPWGVVT 178 Query 193 EKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRSIVAQKVTEVPTG 252 +GRWY++G D DRDA R FRLSR+ V G A ++ LR+ V + V Sbjct 179 HRGRWYVLGWDIDRDAPRTFRLSRLHGAVKDAGRAETDSLYTPEQLRAKVVELVDPPRPE 238 Query 253 EQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAREITGYGADAIVLQ 312 +A VWVA G A LRR G G R+L G G+++E+ + S LAR + G+G+ A+ L+ Sbjct 239 GKALVWVARGEAEGLRRLGSVVGERELDGAVGDLVEIALSSVQTLARAVAGFGSHAVALE 298 Query 313 PGSLRDDVLARL 324 P LRD+V+ARL Sbjct 299 PDRLRDEVVARL 310 >gi|296139873|ref|YP_003647116.1| hypothetical protein Tpau_2167 [Tsukamurella paurometabola DSM 20162] gi|296028007|gb|ADG78777.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=325 Score = 260 bits (664), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 155/329 (48%), Positives = 201/329 (62%), Gaps = 7/329 (2%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 MATS++ERL NLVI LLSTR + + IR++VAGY +AF RMFERDK +LR+LG+ Sbjct 1 MATSRIERLTNLVICLLSTRFPVDRDYIRANVAGYDRDSDDDAFERMFERDKADLRELGV 60 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 P+EV +S + T+GYRI D YAL ++L P+EA AVAVA +W+SPE+ +A Q A+ K Sbjct 61 PIEVAPISRINSTQGYRIAFDDYALGDIDLDPEEATAVAVAAAMWQSPEMSSAAQSAVQK 120 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRA G+DVD G A+A RG+E L +L ID + V F+HR++ +P+ Sbjct 121 LRAGGLDVDGPGAGVGPALAPD------RGAEAALIAMLEGIDRRRQVSFAHRANPTQPF 174 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RT+ PWGVVT +G Y VGHD DR A R F+LSR+ PA P G DL + Sbjct 175 IDRTLHPWGVVTFRGNAYAVGHDVDRGAVRTFKLSRVRGGAVLDRPA-TIRPPDGFDLHA 233 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLARE 300 V V E A +WVA GR LRR + + GR G + +E+RS D LARE Sbjct 234 HVVATVAERDPVGTARLWVARGRGDGLRRLASTQVDAEFRGRPGAELTIEVRSVDALARE 293 Query 301 ITGYGADAIVLQPGSLRDDVLARLRAQAG 329 +TG G DA+V +P LRD V RLRA AG Sbjct 294 VTGLGPDAVVFEPEGLRDAVTGRLRALAG 322 >gi|284032984|ref|YP_003382915.1| transcriptional regulator protein-like protein [Kribbella flavida DSM 17836] gi|283812277|gb|ADB34116.1| transcriptional regulator protein-like protein [Kribbella flavida DSM 17836] Length=320 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 152/330 (47%), Positives = 195/330 (60%), Gaps = 14/330 (4%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+ K ERL+NLVI LL R Y+T E+IR V GY+ +AF +MFERDK+ELRDLGI Sbjct 1 MSARKSERLLNLVICLLVARTYVTKERIREVVEGYAGQTD-DAFEKMFERDKDELRDLGI 59 Query 61 PLEVGRVSALEPTE-GYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALL 119 P+E+G + + GYRI RD + L V L PDEAA + VA ++W+ L AT A+L Sbjct 60 PIEMGTIDKFFSDDVGYRIRRDVFELPEVHLEPDEAAVLGVAARVWQHASLAEATTSAVL 119 Query 120 KLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEP 179 KL+AAG+ D A +A + SE L SA+ S V+F HR S A Sbjct 120 KLKAAGIQTD--------QSALSAIEPHVGASEPAFDPLWSAVVSRTAVRFEHRRSGATE 171 Query 180 YTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLR 239 T RT+EPWG+V+ GRWY+VG DRDR+ATR+FRLSRIG V +G GA TVP G D+R Sbjct 172 ATRRTLEPWGIVSWHGRWYVVGRDRDREATRMFRLSRIGGNVKTVGGPGAFTVPPGTDIR 231 Query 240 SIVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAR 299 S+VA+ PT E A V G +LRR + P + G +++ + S LA Sbjct 232 SLVAELAPPRPTSE-AKVRARTGSCVSLRRRANAIEPYEQG---WDLLHVPYADSGVLAE 287 Query 300 EITGYGADAIVLQPGSLRDDVLARLRAQAG 329 EI YG DA+V PG + D VL RLR AG Sbjct 288 EIASYGPDAVVEGPGDVLDGVLRRLRTVAG 317 >gi|271967144|ref|YP_003341340.1| transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270510319|gb|ACZ88597.1| transcriptional regulator protein-like protein [Streptosporangium roseum DSM 43021] Length=318 Score = 245 bits (625), Expect = 8e-63, Method: Compositional matrix adjust. Identities = 152/328 (47%), Positives = 201/328 (62%), Gaps = 17/328 (5%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+ K ERL+NLVI LL+TR ++AE IR +V GY D+ + EAF RMFERDKNELR++GI Sbjct 1 MSRRKTERLLNLVICLLATRRPLSAEHIRQAVPGY-DAANDEAFQRMFERDKNELREIGI 59 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 P+EV + E GYRI AY L + L PDEAA V +A Q+W+ L A GALLK Sbjct 60 PIEVHK-DPWEEDPGYRIVPQAYELPEITLEPDEAAVVGLAAQVWQRASLAEAASGALLK 118 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRA GV+ D + G + A V + L A+ +VV+F++R++ +E Sbjct 119 LRAGGVETD--EAGGMLGSALELRVDT---QDPAFPALWEAVRDRRVVRFAYRAAASESV 173 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 RTVEPWGVV+ +GRWY+VGHDRDRDA R FRLSRI VTP+G G VP GVD++S Sbjct 174 LTRTVEPWGVVSRRGRWYVVGHDRDRDAARAFRLSRISGPVTPVGRPGTVVVPEGVDIKS 233 Query 241 IVAQKVTEVPTGEQ-ATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSD--RL 297 +V + + P E+ A + V EG LR+ R+ P GG D EL++ +D RL Sbjct 234 MVGYR--DEPVQERTALIRVREGTCQGLRQVARAVRP-GAGGWD----ELDVDFTDTGRL 286 Query 298 AREITGYGADAIVLQPGSLRDDVLARLR 325 A + G+ ADA V+ P RD V+ RL+ Sbjct 287 AGWVVGFAADAEVVGPPDARDAVICRLK 314 >gi|326382285|ref|ZP_08203977.1| transcriptional regulator-like protein [Gordonia neofelifaecis NRRL B-59395] gi|326199015|gb|EGD56197.1| transcriptional regulator-like protein [Gordonia neofelifaecis NRRL B-59395] Length=327 Score = 241 bits (615), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 152/327 (47%), Positives = 202/327 (62%), Gaps = 12/327 (3%) Query 3 TSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSP-SVEAFSRMFERDKNELRDLGIP 61 T+K ERLVNLV+ L+S R ++ A IR++V GY +S S ++F RM ERDK LR++GIP Sbjct 2 TAKNERLVNLVVCLMSARTFVPAVYIRANVNGYMESEQSADSFKRMLERDKALLREMGIP 61 Query 62 LEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLKL 121 +E GR + E EGYRI+ D YAL + L EAAA+A A+ +W P + Q A+LKL Sbjct 62 VETGRNPSGE--EGYRIDPDQYALPEITLDRAEAAAIAAASAVWREPSVAAVFQTAVLKL 119 Query 122 RAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPYT 181 RAAG++V P D + SA ++ G E + LLSAID GQ V F+HRS+R Sbjct 120 RAAGIEVVPDDEVGVLQEGSARSL----GDERAITGLLSAIDVGQPVTFTHRSARGR--K 173 Query 182 VRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRSI 241 RT+EPWG+ +GRWY+ GHDRDRDA R FR+SRI + V G+ VPA ++++I Sbjct 174 TRTLEPWGIAGGRGRWYVTGHDRDRDAVRTFRISRI-SDVEAFEEPGSVVVPASANIQAI 232 Query 242 V--AQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDRLAR 299 V A + G A VWVA GRA LRR SA P +LG DG+++ ++I S L R Sbjct 233 VNEAADLAHADGGATAEVWVAVGRAHGLRRMATSATPHRLGDDDGDLLTIDITSRSGLRR 292 Query 300 EITGYGADAIVLQPGSLRDDVLARLRA 326 + G DA+VL P LR DV+A L A Sbjct 293 VVLAAGPDAVVLSPADLRADVIAGLDA 319 >gi|330468510|ref|YP_004406253.1| hypothetical protein VAB18032_22765 [Verrucosispora maris AB-18-032] gi|328811481|gb|AEB45653.1| hypothetical protein VAB18032_22765 [Verrucosispora maris AB-18-032] Length=348 Score = 230 bits (587), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 146/329 (45%), Positives = 184/329 (56%), Gaps = 17/329 (5%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPS----VEAFSRMFERDKNELR 56 M+ S+ ERLVNLVI LLSTR ++TA +I ++V GY P EAF R FERDK ELR Sbjct 1 MSRSRTERLVNLVICLLSTRRFLTAAQIAATVPGYEHDPDDAREHEAFQRKFERDKAELR 60 Query 57 DLGIPLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQG 116 +LG+PLE G SA + GYRI R YAL + L PDEAAAV +A +LW+ L A Sbjct 61 ELGVPLETGTASAFDTEPGYRIARREYALPEIPLKPDEAAAVGIAARLWQHAGLAAAASS 120 Query 117 ALLKLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSR 176 L KLRAAGVDVDP T + + + L +A + V+F +R Sbjct 121 GLAKLRAAGVDVDPHAT---------LGLEPMVNVDPAFAPLTAAARDRREVRFDYRVPD 171 Query 177 AEPYTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGV 236 + R ++PWGVV +GRWY+VGHD DRDATR FRLSR+ QV G GA P GV Sbjct 172 RDAPDHRRLQPWGVVCWRGRWYVVGHDLDRDATRCFRLSRVVGQVRATGTPGAYQPPVGV 231 Query 237 DLRSIVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDGEVIELEIRSSDR 296 DL S VA+ +ATV VA GRA LRR A G + + + L D Sbjct 232 DLISHVARWSGPTEHAGRATVLVAPGRAAGLRRVAVEA----TLGPEADRLVLPYTDVDL 287 Query 297 LAREITGYGADAIVLQPGSLRDDVLARLR 325 +A + GYG + VL P +RD V+ RL+ Sbjct 288 IAGHLVGYGPEVRVLDPPEVRDAVIQRLK 316 >gi|296269799|ref|YP_003652431.1| transcriptional regulator protein-like protein [Thermobispora bispora DSM 43833] gi|296092586|gb|ADG88538.1| transcriptional regulator protein-like protein [Thermobispora bispora DSM 43833] Length=313 Score = 229 bits (585), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 150/326 (47%), Positives = 190/326 (59%), Gaps = 18/326 (5%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPSVEAFSRMFERDKNELRDLGI 60 M+ K ERL+NLVI LL+TR +TAE+IR +V GY D + EAF RMFERDK+ELR++GI Sbjct 1 MSRRKTERLLNLVICLLATRRPLTAEQIRQAVPGY-DRDNDEAFQRMFERDKSELREIGI 59 Query 61 PLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQGALLK 120 P+EV R E GYRI R+AY L + L PDEAA + +A Q+W L A GALLK Sbjct 60 PIEVHR-DPWENEPGYRIVREAYELPEITLEPDEAAVLGLAAQVWRRASLAGAASGALLK 118 Query 121 LRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSRAEPY 180 LRAAG+D D +A + + L A+ +VV+F +RS+ + Sbjct 119 LRAAGIDAD---------LAEGPLELRVDTRDPAFPALWEAVRDRRVVRFGYRSASSGEL 169 Query 181 TVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGVDLRS 240 R VEPWGVV +G+WYLVGHDRDR A RVFRLSRI QVTP+G GA TVP GVDLR Sbjct 170 RTRVVEPWGVVCRRGKWYLVGHDRDRGAPRVFRLSRIAGQVTPVGRPGAFTVPEGVDLRG 229 Query 241 IVAQKVTEVPTGEQATVWVAEGRATALRRAGRSAGPRQLGGRDG-EVIELEIRSSDRLAR 299 +V E P A V + G LR A RS G DG + E+ + A Sbjct 230 MVG--FQEQPPERVARVHIRPGTCLGLRHAARSV----RSGPDGWDEAEVTFTDPEWFAG 283 Query 300 EITGYGADAIVLQPGSLRDDVLARLR 325 I G GA+A ++ P R+ V+ RL+ Sbjct 284 WIAGLGANARIVDPPDAREAVIRRLK 309 >gi|302867427|ref|YP_003836064.1| hypothetical protein Micau_2957 [Micromonospora aurantiaca ATCC 27029] gi|302570286|gb|ADL46488.1| hypothetical protein Micau_2957 [Micromonospora aurantiaca ATCC 27029] Length=332 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 148/331 (45%), Positives = 186/331 (57%), Gaps = 21/331 (6%) Query 1 MATSKVERLVNLVIALLSTRGYITAEKIRSSVAGYSDSPS----VEAFSRMFERDKNELR 56 M+ ++ ERLVNLVI LLSTR ++TA +I ++V GY P EAF R FERDK ELR Sbjct 1 MSRTRTERLVNLVICLLSTRRFLTAAQIAATVPGYEHDPDDAKDHEAFQRKFERDKAELR 60 Query 57 DLGIPLEVGRVSALEPTEGYRINRDAYALSPVELTPDEAAAVAVATQLWESPELITATQG 116 +LG+PLE G S + GYRI AYAL + L PDEAAAV +A +LW+ L A Sbjct 61 ELGVPLETGTASVFDAEPGYRIAPRAYALPDIPLEPDEAAAVGIAARLWQHAGLAAAASS 120 Query 117 ALLKLRAAGVDVDPLDTGAPVAIASAAAVSGLRGSEDVLGILLSAIDSGQVVQFSHRSSR 176 L KLRAAG+DVDP T + + + L +A + V F +R Sbjct 121 GLAKLRAAGIDVDPQAT---------LGLEPMVTVDPAFAPLTAAARDRREVSFDYRVPD 171 Query 177 AEPYTVRTVEPWGVVTEKGRWYLVGHDRDRDATRVFRLSRIGAQVTPIGPAGATTVPAGV 236 + T R V+PWGVV +GRWY+VGHD DR ATR FRLSR+ V G GA PAGV Sbjct 172 RDAPTRRRVQPWGVVCWRGRWYVVGHDLDRAATRCFRLSRVVGTVRATGEPGAYEPPAGV 231 Query 237 DLRSIVAQKVTEVPTGEQATVWVAEGRATALRRAG--RSAGPRQLGGRDGEVIELEIRSS 294 DL S VA+ V +ATV GRA LRR AGP DG+ + L + Sbjct 232 DLISHVARWSGPVERTGRATVLATPGRAAGLRRWAVECQAGP------DGDRLVLPYADA 285 Query 295 DRLAREITGYGADAIVLQPGSLRDDVLARLR 325 D LA +I GYG D VL+P +R+ V+ RL+ Sbjct 286 DYLAGQIVGYGPDVRVLEPPEVREAVIQRLK 316 Lambda K H 0.316 0.132 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 592843174656 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40