BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2097c Length=452 Score E Sequences producing significant alignments: (Bits) Value gi|15609234|ref|NP_216613.1| hypothetical protein Rv2097c [Mycob... 930 0.0 gi|167967036|ref|ZP_02549313.1| hypothetical protein MtubH3_0283... 921 0.0 gi|342859801|ref|ZP_08716454.1| hypothetical protein MCOL_13018 ... 911 0.0 gi|41407931|ref|NP_960767.1| hypothetical protein MAP1833c [Myco... 907 0.0 gi|118617839|ref|YP_906171.1| hypothetical protein MUL_2329 [Myc... 907 0.0 gi|296165180|ref|ZP_06847727.1| proteasome accessory factor PafA... 903 0.0 gi|254819640|ref|ZP_05224641.1| proteasome component [Mycobacter... 900 0.0 gi|254775075|ref|ZP_05216591.1| proteasome component [Mycobacter... 899 0.0 gi|120404417|ref|YP_954246.1| hypothetical protein Mvan_3445 [My... 896 0.0 gi|302425220|sp|A1TAP0.2|PAFA_MYCVP RecName: Full=Pup--protein l... 894 0.0 gi|240173417|ref|ZP_04752075.1| hypothetical protein MkanA1_2915... 894 0.0 gi|145223676|ref|YP_001134354.1| hypothetical protein Mflv_3089 ... 893 0.0 gi|15827689|ref|NP_301952.1| DNA-binding protein [Mycobacterium ... 893 0.0 gi|169629269|ref|YP_001702918.1| hypothetical protein MAB_2183 [... 892 0.0 gi|108799434|ref|YP_639631.1| hypothetical protein Mmcs_2467 [My... 889 0.0 gi|118470135|ref|YP_888180.1| proteasome component [Mycobacteriu... 886 0.0 gi|315444003|ref|YP_004076882.1| hypothetical protein Mspyr1_240... 885 0.0 gi|119868547|ref|YP_938499.1| hypothetical protein Mkms_2512 [My... 881 0.0 gi|333990760|ref|YP_004523374.1| hypothetical protein JDM601_212... 880 0.0 gi|302425213|sp|Q5YUX4.2|PAFA_NOCFA RecName: Full=Pup--protein l... 864 0.0 gi|312139725|ref|YP_004007061.1| 20S proteasome component [Rhodo... 859 0.0 gi|226359993|ref|YP_002777771.1| proteasome accessory factor A [... 857 0.0 gi|302425225|sp|P72263.2|PAFA1_RHOER RecName: Full=Pup--protein ... 856 0.0 gi|54025139|ref|YP_119381.1| putative proteasome component [Noca... 856 0.0 gi|226306658|ref|YP_002766618.1| proteasome accessory factor A [... 848 0.0 gi|1666181|emb|CAB04762.1| ORF9(1) [Rhodococcus erythropolis] 848 0.0 gi|111017860|ref|YP_700832.1| hypothetical protein RHA1_ro00841 ... 847 0.0 gi|229493446|ref|ZP_04387231.1| proteasome accessory factor PafA... 845 0.0 gi|302425223|sp|D0LDT3.2|PAFA_GORB4 RecName: Full=Pup--protein l... 843 0.0 gi|343927935|ref|ZP_08767401.1| proteasome accessory factor A [G... 843 0.0 gi|75345056|sp|P72270.1|PAFA2_RHOER RecName: Full=Pup--protein l... 840 0.0 gi|262202391|ref|YP_003273599.1| hypothetical protein Gbro_2465 ... 836 0.0 gi|333919680|ref|YP_004493261.1| Pup--protein ligase [Amycolicic... 830 0.0 gi|296139872|ref|YP_003647115.1| hypothetical protein Tpau_2166 ... 822 0.0 gi|256376373|ref|YP_003100033.1| hypothetical protein Amir_2247 ... 791 0.0 gi|300786767|ref|YP_003767058.1| hypothetical protein AMED_4890 ... 788 0.0 gi|326382284|ref|ZP_08203976.1| hypothetical protein SCNU_05061 ... 786 0.0 gi|302527212|ref|ZP_07279554.1| proteasome accessory factor A [S... 785 0.0 gi|331697097|ref|YP_004333336.1| proteasome accessory factor Paf... 783 0.0 gi|325002968|ref|ZP_08124080.1| hypothetical protein PseP1_29575... 781 0.0 gi|134098823|ref|YP_001104484.1| hypothetical protein SACE_2254 ... 776 0.0 gi|257056202|ref|YP_003134034.1| putative proteasome component/h... 775 0.0 gi|296394012|ref|YP_003658896.1| hypothetical protein Srot_1603 ... 769 0.0 gi|317507300|ref|ZP_07965042.1| hypothetical protein HMPREF9336_... 763 0.0 gi|289443602|ref|ZP_06433346.1| LOW QUALITY PROTEIN: conserved h... 761 0.0 gi|258653131|ref|YP_003202287.1| hypothetical protein Namu_2960 ... 724 0.0 gi|238064539|ref|ZP_04609248.1| hypothetical protein MCAG_05505 ... 718 0.0 gi|302867421|ref|YP_003836058.1| hypothetical protein Micau_2951... 714 0.0 gi|145594778|ref|YP_001159075.1| hypothetical protein Strop_2247... 713 0.0 gi|159037960|ref|YP_001537213.1| hypothetical protein Sare_2364 ... 712 0.0 >gi|15609234|ref|NP_216613.1| hypothetical protein Rv2097c [Mycobacterium tuberculosis H37Rv] gi|15841588|ref|NP_336625.1| hypothetical protein MT2158 [Mycobacterium tuberculosis CDC1551] gi|31793280|ref|NP_855773.1| hypothetical protein Mb2124c [Mycobacterium bovis AF2122/97] 77 more sequence titles Length=452 Score = 930 bits (2403), Expect = 0.0, Method: Compositional matrix adjust. Identities = 451/452 (99%), Positives = 452/452 (100%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE Sbjct 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI Sbjct 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV Sbjct 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 >gi|167967036|ref|ZP_02549313.1| hypothetical protein MtubH3_02833 [Mycobacterium tuberculosis H37Ra] gi|254551130|ref|ZP_05141577.1| hypothetical protein Mtube_11811 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294997041|ref|ZP_06802732.1| hypothetical protein Mtub2_21683 [Mycobacterium tuberculosis 210] gi|297634678|ref|ZP_06952458.1| hypothetical protein MtubK4_11176 [Mycobacterium tuberculosis KZN 4207] gi|297731666|ref|ZP_06960784.1| hypothetical protein MtubKR_11281 [Mycobacterium tuberculosis KZN R506] gi|313659001|ref|ZP_07815881.1| hypothetical protein MtubKV_11296 [Mycobacterium tuberculosis KZN V2475] gi|326903711|gb|EGE50644.1| proteasome component [Mycobacterium tuberculosis W-148] Length=447 Score = 921 bits (2381), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/447 (100%), Positives = 447/447 (100%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL Sbjct 241 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN Sbjct 361 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRAVDERVKRLIASM 447 >gi|342859801|ref|ZP_08716454.1| hypothetical protein MCOL_13018 [Mycobacterium colombiense CECT 3035] gi|342132933|gb|EGT86153.1| hypothetical protein MCOL_13018 [Mycobacterium colombiense CECT 3035] Length=452 Score = 911 bits (2354), Expect = 0.0, Method: Compositional matrix adjust. Identities = 440/452 (98%), Positives = 447/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAALVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYY+RAVEHLQTREPNAQIE Sbjct 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYSRAVEHLQTREPNAQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 Q+VDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDI Sbjct 301 QIVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAARVTTDEEIAEAVD PPQTTRARLRGEFISAAQ AGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARVTTDEEIAEAVDNPPQTTRARLRGEFISAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 >gi|41407931|ref|NP_960767.1| hypothetical protein MAP1833c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118464998|ref|YP_881605.1| proteasome component [Mycobacterium avium 104] gi|81414120|sp|Q73YX0.1|PAFA_MYCPA RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|302425153|sp|A0QFB7.1|PAFA_MYCA1 RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|41396285|gb|AAS04150.1| hypothetical protein MAP_1833c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118166285|gb|ABK67182.1| proteasome component [Mycobacterium avium 104] Length=452 Score = 907 bits (2344), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/452 (97%), Positives = 447/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+LVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAALVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAVEHLQTREPNAQIE Sbjct 241 RDFSLDNPIRAIREVSHDITGRRPVRLAGGRQASALDIQREYYSRAVEHLQTREPNAQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 Q+VDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDI Sbjct 301 QIVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAARVTTDE+IAEAVD PPQTTRARLRGEFISAAQ AGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARVTTDEDIAEAVDTPPQTTRARLRGEFISAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 >gi|118617839|ref|YP_906171.1| hypothetical protein MUL_2329 [Mycobacterium ulcerans Agy99] gi|183983082|ref|YP_001851373.1| hypothetical protein MMAR_3083 [Mycobacterium marinum M] gi|302425158|sp|B2HFV4.1|PAFA_MYCMM RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|302425163|sp|A0PQT1.1|PAFA_MYCUA RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|118569949|gb|ABL04700.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] gi|183176408|gb|ACC41518.1| conserved hypothetical protein [Mycobacterium marinum M] Length=452 Score = 907 bits (2343), Expect = 0.0, Method: Compositional matrix adjust. Identities = 437/452 (97%), Positives = 446/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTA+LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTASLVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYY+RAVEHLQTREPNAQ+E Sbjct 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYSRAVEHLQTREPNAQVE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDI Sbjct 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLA RVTTDEEIA+AVD PPQTTRARLRGEFISAAQ AGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLATRVTTDEEIADAVDNPPQTTRARLRGEFISAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 >gi|296165180|ref|ZP_06847727.1| proteasome accessory factor PafA [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899369|gb|EFG78828.1| proteasome accessory factor PafA [Mycobacterium parascrofulaceum ATCC BAA-614] Length=447 Score = 903 bits (2334), Expect = 0.0, Method: Compositional matrix adjust. Identities = 436/447 (98%), Positives = 442/447 (99%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSLVQLVTHDRAGEWVLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLVQLVTHDRAGEWVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAALVLEMIE+GV FRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALVLEMIEAGVPFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYY+RAVEHLQTREPNAQIEQVVDL Sbjct 241 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYSRAVEHLQTREPNAQIEQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLAARVTTDEEIAEAVD PPQTTRARLRGEFISAAQ AGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAARVTTDEEIAEAVDHPPQTTRARLRGEFISAAQAAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRAVDERVKRLIASM 447 >gi|254819640|ref|ZP_05224641.1| proteasome component [Mycobacterium intracellulare ATCC 13950] Length=447 Score = 900 bits (2327), Expect = 0.0, Method: Compositional matrix adjust. Identities = 434/447 (98%), Positives = 441/447 (99%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAALVLEMIE+GV FRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALVLEMIEAGVPFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAVEHLQTREPNAQIEQ+VDL Sbjct 241 DNPIRAIREVSHDITGRRPVRLAGGRQASALDIQREYYSRAVEHLQTREPNAQIEQIVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY MELS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYSMELSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLAARVTTDE+IAEAVD PPQTTRARLRGEFISAAQ AGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAARVTTDEDIAEAVDNPPQTTRARLRGEFISAAQAAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRAVDERVKRLIASM 447 >gi|254775075|ref|ZP_05216591.1| proteasome component [Mycobacterium avium subsp. avium ATCC 25291] gi|336461985|gb|EGO40834.1| proteasome accessory factor PafA [Mycobacterium avium subsp. paratuberculosis S397] Length=447 Score = 899 bits (2323), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/447 (97%), Positives = 442/447 (99%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECD+LVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDNLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAALVLEMIE+GV FRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALVLEMIEAGVPFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAVEHLQTREPNAQIEQ+VDL Sbjct 241 DNPIRAIREVSHDITGRRPVRLAGGRQASALDIQREYYSRAVEHLQTREPNAQIEQIVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLAARVTTDE+IAEAVD PPQTTRARLRGEFISAAQ AGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAARVTTDEDIAEAVDTPPQTTRARLRGEFISAAQAAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRAVDERVKRLIASM 447 >gi|120404417|ref|YP_954246.1| hypothetical protein Mvan_3445 [Mycobacterium vanbaalenii PYR-1] gi|119957235|gb|ABM14240.1| protein of unknown function DUF245 domain protein [Mycobacterium vanbaalenii PYR-1] Length=462 Score = 896 bits (2315), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/452 (95%), Positives = 444/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 11 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 70 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 71 HPEYATAECDSLTQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSY 130 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 131 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 190 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVG+A+LVLEMIE+GVAF Sbjct 191 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGSASLVLEMIEAGVAF 250 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY RAVE+LQTREPN QIE Sbjct 251 RDFSLDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYARAVEYLQTREPNTQIE 310 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDI Sbjct 311 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDI 370 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAAR+TTDEEI AV+ PPQTTRA+LRGEFISAAQEAGRDFTVDWV Sbjct 371 KRGRGVFDLLQRKGLAARITTDEEIEAAVNTPPQTTRAKLRGEFISAAQEAGRDFTVDWV 430 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 431 HLKLNDQAQRTVLCKDPFRSVDERVKRLIASM 462 >gi|302425220|sp|A1TAP0.2|PAFA_MYCVP RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme Length=452 Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust. Identities = 428/452 (95%), Positives = 444/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLTQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVG+A+LVLEMIE+GVAF Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGSASLVLEMIEAGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY RAVE+LQTREPN QIE Sbjct 241 RDFSLDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYARAVEYLQTREPNTQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDI Sbjct 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAAR+TTDEEI AV+ PPQTTRA+LRGEFISAAQEAGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARITTDEEIEAAVNTPPQTTRAKLRGEFISAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVKRLIASM 452 >gi|240173417|ref|ZP_04752075.1| hypothetical protein MkanA1_29151 [Mycobacterium kansasii ATCC 12478] Length=447 Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust. Identities = 431/447 (97%), Positives = 440/447 (99%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSLVQLVTHDRAGEWVLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLVQLVTHDRAGEWVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAALVLEMIE+GVAFRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALVLEMIEAGVAFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREY+ RAV+HLQ REPN QIEQVVDL Sbjct 241 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYHARAVDHLQNREPNPQIEQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLAARVTTDEEIA+AVD PPQTTRARLRGEFISAAQ AGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAARVTTDEEIADAVDHPPQTTRARLRGEFISAAQAAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVKRLIASM 447 >gi|145223676|ref|YP_001134354.1| hypothetical protein Mflv_3089 [Mycobacterium gilvum PYR-GCK] gi|302425156|sp|A4TB47.1|PAFA_MYCGI RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|145216162|gb|ABP45566.1| protein of unknown function DUF245 domain protein [Mycobacterium gilvum PYR-GCK] Length=452 Score = 893 bits (2308), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/452 (95%), Positives = 445/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL+QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLIQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVG+A+LVLEMIE+GVAF Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGSASLVLEMIEAGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY RAVE+LQ+REPN QIE Sbjct 241 RDFSLDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYARAVEYLQSREPNTQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDI Sbjct 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAAR+TTDEEI AV+ PPQTTRA+LRGEFISAAQEAGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARITTDEEIEAAVNTPPQTTRAKLRGEFISAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVKRLIASM 452 >gi|15827689|ref|NP_301952.1| DNA-binding protein [Mycobacterium leprae TN] gi|221230166|ref|YP_002503582.1| putative DNA-binding protein [Mycobacterium leprae Br4923] gi|13432265|sp|P54077.2|PAFA_MYCLE RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|302425157|sp|B8ZRF5.1|PAFA_MYCLB RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|4200277|emb|CAA22938.1| hypothetical protein MLCB2533.24 [Mycobacterium leprae] gi|13093240|emb|CAC31709.1| possible DNA-binding protein [Mycobacterium leprae] gi|219933273|emb|CAR71423.1| possible DNA-binding protein [Mycobacterium leprae Br4923] Length=452 Score = 893 bits (2307), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/452 (95%), Positives = 443/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+LVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM ETTTMLKVGTAAL+LEM+E+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMCETTTMLKVGTAALMLEMVETGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYYTRA EHLQTREPN Q E Sbjct 241 RDFSLDNPIRAIREVSHDITGRRPVRLAGGRQASALDIQREYYTRAFEHLQTREPNVQFE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDA+ESQDFAKVDTEIDWVIKRKLFQRYQDR +MEL+ PKIAQLDLAYHDI Sbjct 301 QVVDLWGRQLDAIESQDFAKVDTEIDWVIKRKLFQRYQDRDNMELTDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAARVTTDE+IA+AV+ PPQTTRARLRGEFISAAQ AGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARVTTDEDIADAVNHPPQTTRARLRGEFISAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 >gi|169629269|ref|YP_001702918.1| hypothetical protein MAB_2183 [Mycobacterium abscessus ATCC 19977] gi|302425154|sp|B1MAJ3.1|PAFA_MYCA9 RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|169241236|emb|CAM62264.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=452 Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/452 (95%), Positives = 444/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSLVQLVTHDRAGE VLEDLLVDAEQRL+DEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLVQLVTHDRAGERVLEDLLVDAEQRLSDEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM+ETTTMLKVGTAALVLEMIESGVAF Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMAETTTMLKVGTAALVLEMIESGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREY+ RAVEHL TREPN Q+E Sbjct 241 RDFSLDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYHARAVEHLNTREPNEQVE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVV+LWGR LDAVESQDF+KVDTEIDWVIKRKLFQRYQDRY+MELS PKIAQLDLAYHDI Sbjct 301 QVVELWGRTLDAVESQDFSKVDTEIDWVIKRKLFQRYQDRYNMELSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAARVTTDEEI AVDQPPQTTRA+LRG+FI+AAQEAGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARVTTDEEIKAAVDQPPQTTRAKLRGDFITAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLIASM 452 >gi|108799434|ref|YP_639631.1| hypothetical protein Mmcs_2467 [Mycobacterium sp. MCS] gi|122976984|sp|Q1B959.1|PAFA_MYCSS RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|302425221|sp|A3PZG1.2|PAFA_MYCSJ RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|302425222|sp|A1UFV1.2|PAFA_MYCSK RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|108769853|gb|ABG08575.1| protein of unknown function DUF245-like protein [Mycobacterium sp. MCS] Length=452 Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 426/452 (95%), Positives = 445/452 (99%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+L+QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLIQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM E+TTMLKVGTA+LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMCESTTMLKVGTASLVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAV++LQTREPN+QIE Sbjct 241 RDFSLDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYSRAVDYLQTREPNSQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDI Sbjct 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAAR+TTDEEI AVD PPQTTRA+LRGEFISAAQEAGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARITTDEEIDAAVDTPPQTTRAKLRGEFISAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVKRLIASM 452 >gi|118470135|ref|YP_888180.1| proteasome component [Mycobacterium smegmatis str. MC2 155] gi|302425159|sp|A0QZ42.1|PAFA_MYCS2 RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|118171422|gb|ABK72318.1| proteasome component [Mycobacterium smegmatis str. MC2 155] Length=452 Score = 886 bits (2290), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/452 (95%), Positives = 442/452 (98%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+L+QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLIQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM E TTMLKVGTA+LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMCEATTMLKVGTASLVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAVE+LQ+REPN QIE Sbjct 241 RDFSLDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYSRAVEYLQSREPNTQIE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDI Sbjct 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAAR+TTDEEI AV PPQTTRA+LRGEFISAAQEAGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARITTDEEIDAAVTTPPQTTRAKLRGEFISAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVKRLIASM 452 >gi|315444003|ref|YP_004076882.1| hypothetical protein Mspyr1_24050 [Mycobacterium sp. Spyr1] gi|315262306|gb|ADT99047.1| putative proteasome component/protein of unknown function, DUF275 [Mycobacterium sp. Spyr1] Length=447 Score = 885 bits (2286), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/447 (95%), Positives = 440/447 (99%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSL+QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLIQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVG+A+LVLEMIE+GVAFRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGSASLVLEMIEAGVAFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY RAVE+LQ+REPN QIEQVVDL Sbjct 241 DNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYARAVEYLQSREPNTQIEQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLAAR+TTDEEI AV+ PPQTTRA+LRGEFISAAQEAGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAARITTDEEIEAAVNTPPQTTRAKLRGEFISAAQEAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVKRLIASM 447 >gi|119868547|ref|YP_938499.1| hypothetical protein Mkms_2512 [Mycobacterium sp. KMS] gi|126435088|ref|YP_001070779.1| hypothetical protein Mjls_2504 [Mycobacterium sp. JLS] gi|119694636|gb|ABL91709.1| protein of unknown function DUF245 domain protein [Mycobacterium sp. KMS] gi|126234888|gb|ABN98288.1| protein of unknown function DUF245 domain protein [Mycobacterium sp. JLS] Length=447 Score = 881 bits (2277), Expect = 0.0, Method: Compositional matrix adjust. Identities = 422/447 (95%), Positives = 440/447 (99%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECD+L+QLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDNLIQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNM E+TTMLKVGTA+LVLEMIE+GV FRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMCESTTMLKVGTASLVLEMIEAGVPFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAV++LQTREPN+QIEQVVDL Sbjct 241 DNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYSRAVDYLQTREPNSQIEQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRY+MELS PKI+QLDLAYHDIKRGRG Sbjct 301 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYNMELSDPKISQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLAAR+TTDEEI AVD PPQTTRA+LRGEFISAAQEAGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAARITTDEEIDAAVDTPPQTTRAKLRGEFISAAQEAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVKRLIASM 447 >gi|333990760|ref|YP_004523374.1| hypothetical protein JDM601_2120 [Mycobacterium sp. JDM601] gi|333486728|gb|AEF36120.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=452 Score = 880 bits (2275), Expect = 0.0, Method: Compositional matrix adjust. Identities = 423/452 (94%), Positives = 441/452 (98%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+LVQLVTHDRAGE VLEDLL+DAEQRLADEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLVQLVTHDRAGERVLEDLLIDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSET+T+LKVG+AALVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETSTLLKVGSAALVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQA ALDIQREYY RAV+++QTR N Q+E Sbjct 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQAGALDIQREYYGRAVDYVQTRASNPQLE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QV+DLWGRQLDAVE+QDFAKVDTEIDWVIKRKLFQRYQDRYDMELS PKIAQLDLAYHDI Sbjct 301 QVIDLWGRQLDAVETQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLAARVTTDEE+ EAVD PPQTTRA+LRGEFISAAQ AGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAARVTTDEEVDEAVDTPPQTTRAKLRGEFISAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERVKRLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVKRLIASM 452 >gi|302425213|sp|Q5YUX4.2|PAFA_NOCFA RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme Length=452 Score = 864 bits (2233), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/452 (92%), Positives = 437/452 (97%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QLVTHDRAGE VLE+LL+DAEQRLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLHQLVTHDRAGERVLEELLIDAEQRLAEEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+L+VRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENFLVVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIE+GVAF Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIEAGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY RAVEHL+ R+ + QI+ Sbjct 241 RDFALDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYARAVEHLRNRDRDPQID 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDRYDMELS PKIAQLDLAYHDI Sbjct 301 QVVDLWGRALDAVEAQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLA R+T DE + AVD PPQTTRA+LRG+FI+AAQEAGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAKRITEDEAVDAAVDTPPQTTRAKLRGDFITAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVDRLIASM 452 >gi|312139725|ref|YP_004007061.1| 20S proteasome component [Rhodococcus equi 103S] gi|325676825|ref|ZP_08156498.1| proteasome accessory factor PafA [Rhodococcus equi ATCC 33707] gi|311889064|emb|CBH48377.1| putative 20S proteasome component [Rhodococcus equi 103S] gi|325552373|gb|EGD22062.1| proteasome accessory factor PafA [Rhodococcus equi ATCC 33707] Length=452 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/452 (91%), Positives = 437/452 (97%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL+QLV HDRAGE VLEDLLVDAEQRLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLLQLVNHDRAGERVLEDLLVDAEQRLAEEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+L+VRAGEFSRISDVLLPFLVTRQLICGAGK+LQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENFLVVRAGEFSRISDVLLPFLVTRQLICGAGKILQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM+ETTTMLKVGTAALVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMAETTTMLKVGTAALVLEMIEAGVPF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY+RAV+HL+TRE + Q++ Sbjct 241 RDFALDNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYSRAVDHLRTRERDPQVD 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGR LDAVESQDFAKVDTEIDWVIKRKLFQRYQD+Y M+L+ PKIAQLDLAYHDI Sbjct 301 QVVDLWGRTLDAVESQDFAKVDTEIDWVIKRKLFQRYQDKYGMDLADPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FDLLQRKGLA RVT DE I AV PPQTTRA+LRGEFI+AAQ+AGRDFTVDWV Sbjct 361 KRGRGVFDLLQRKGLAKRVTEDETIEAAVQTPPQTTRAKLRGEFIAAAQDAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLIASM 452 >gi|226359993|ref|YP_002777771.1| proteasome accessory factor A [Rhodococcus opacus B4] gi|302425167|sp|C1ASP4.1|PAFA_RHOOB RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|302425219|sp|Q0SIG2.2|PAFA_RHOSR RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|226238478|dbj|BAH48826.1| proteasome accessory factor A [Rhodococcus opacus B4] Length=452 Score = 857 bits (2213), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/452 (91%), Positives = 434/452 (97%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+L+QLV HDRAGE VLE+LL+DAEQRLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLIQLVNHDRAGERVLEELLIDAEQRLAEEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENFLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVGTAALVLEMIE+GV+F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGTAALVLEMIEAGVSF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREY+ RAVEHLQ R+P+ Q+ Sbjct 241 RDFALDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYHARAVEHLQNRDPDPQVT 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ EL+ PKIAQLDLAYHDI Sbjct 301 QVVDLWGRMLDAVETQDFAKVDTEIDWVIKRKLFQRYQDRHGFELADPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+LQRKGL R+T DE I AVD PPQTTRA+LRGEFI+AAQEAGRDFTVDWV Sbjct 361 KRGRGVFDVLQRKGLVKRITEDETIEAAVDTPPQTTRAKLRGEFITAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLIASM 452 >gi|302425225|sp|P72263.2|PAFA1_RHOER RecName: Full=Pup--protein ligase 1; AltName: Full=Proteasome accessory factor A 1; AltName: Full=Pup-conjugating enzyme 1 Length=452 Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/452 (91%), Positives = 434/452 (97%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD+L+QLV HDRAGE VLE+LL+DAEQRLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDNLIQLVNHDRAGERVLEELLIDAEQRLAEEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENFLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVGTAALVLEMIE+GV+F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGTAALVLEMIEAGVSF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREY+ RAVEHLQ REP+ Q+ Sbjct 241 RDFALDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYHARAVEHLQNREPDPQVT 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVV+LWGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ EL+ PKIAQLDLAYHDI Sbjct 301 QVVELWGRMLDAVETQDFAKVDTEIDWVIKRKLFQRYQDRHGFELADPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+LQRKGL R+T DE I AVD PPQTTRA+LRGEFI+AAQEAGRDFTVDWV Sbjct 361 KRGRGVFDVLQRKGLVKRITEDETIEAAVDTPPQTTRAKLRGEFITAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLIASM 452 >gi|54025139|ref|YP_119381.1| putative proteasome component [Nocardia farcinica IFM 10152] gi|54016647|dbj|BAD58017.1| putative proteasome component [Nocardia farcinica IFM 10152] Length=447 Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/447 (92%), Positives = 432/447 (97%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSL QLVTHDRAGE VLE+LL+DAEQRLA+EGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLHQLVTHDRAGERVLEELLIDAEQRLAEEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 +L+VRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 FLVVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIE+GVAFRDF+L Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIEAGVAFRDFAL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD+TGRRPVRLAGGRQASALDIQREYY RAVEHL+ R+ + QI+QVVDL Sbjct 241 DNPIRAIREVSHDLTGRRPVRLAGGRQASALDIQREYYARAVEHLRNRDRDPQIDQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDRYDMELS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRALDAVEAQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQRKGLA R+T DE + AVD PPQTTRA+LRG+FI+AAQEAGRDFTVDWVHLKLN Sbjct 361 VFDLLQRKGLAKRITEDEAVDAAVDTPPQTTRAKLRGDFITAAQEAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERV RLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVDRLIASM 447 >gi|226306658|ref|YP_002766618.1| proteasome accessory factor A [Rhodococcus erythropolis PR4] gi|302425166|sp|C0ZZU4.1|PAFA_RHOE4 RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|226185775|dbj|BAH33879.1| proteasome accessory factor A [Rhodococcus erythropolis PR4] Length=452 Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/452 (89%), Positives = 434/452 (97%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL+QLV HDRAGE VLE+LL+DAE RLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLIQLVNHDRAGERVLEELLIDAEARLAEEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENFLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM+ETTTMLKVG+AALVLEMIE+GV+F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMAETTTMLKVGSAALVLEMIEAGVSF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIREVSHDVTG++PVRLAGGRQASALDIQREY+ +AVEHL+ REP+ Q+E Sbjct 241 RDFALDNPIRAIREVSHDVTGKKPVRLAGGRQASALDIQREYHAKAVEHLRNREPDPQVE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ +LS PKIAQLDLAYHDI Sbjct 301 QVVDLWGRTLDAVEAQDFAKVDTEIDWVIKRKLFQRYQDRHGFDLSDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+LQRKGL RVT DE I +AV+ PPQTTRA+LRG+FI+AAQ AGRDFTVDWV Sbjct 361 KRGRGVFDVLQRKGLVKRVTEDETIDDAVENPPQTTRAKLRGDFITAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLIASM 452 >gi|1666181|emb|CAB04762.1| ORF9(1) [Rhodococcus erythropolis] Length=447 Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/447 (91%), Positives = 429/447 (96%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECD+L+QLV HDRAGE VLE+LL+DAEQRLA+EGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDNLIQLVNHDRAGERVLEELLIDAEQRLAEEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 +L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 FLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVGTAALVLEMIE+GV+FRDF+L Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGTAALVLEMIEAGVSFRDFAL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREY+ RAVEHLQ REP+ Q+ QVV+L Sbjct 241 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYHARAVEHLQNREPDPQVTQVVEL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ EL+ PKIAQLDLAYHDIKRGRG Sbjct 301 WGRMLDAVETQDFAKVDTEIDWVIKRKLFQRYQDRHGFELADPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FD+LQRKGL R+T DE I AVD PPQTTRA+LRGEFI+AAQEAGRDFTVDWVHLKLN Sbjct 361 VFDVLQRKGLVKRITEDETIEAAVDTPPQTTRAKLRGEFITAAQEAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVERLIASM 447 >gi|111017860|ref|YP_700832.1| hypothetical protein RHA1_ro00841 [Rhodococcus jostii RHA1] gi|110817390|gb|ABG92674.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=447 Score = 847 bits (2189), Expect = 0.0, Method: Compositional matrix adjust. Identities = 403/447 (91%), Positives = 429/447 (96%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECD+L+QLV HDRAGE VLE+LL+DAEQRLA+EGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDNLIQLVNHDRAGERVLEELLIDAEQRLAEEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 +L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 FLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSE+TTMLKVGTAALVLEMIE+GV+FRDF+L Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSESTTMLKVGTAALVLEMIEAGVSFRDFAL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREY+ RAVEHLQ R+P+ Q+ QVVDL Sbjct 241 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYHARAVEHLQNRDPDPQVTQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ EL+ PKIAQLDLAYHDIKRGRG Sbjct 301 WGRMLDAVETQDFAKVDTEIDWVIKRKLFQRYQDRHGFELADPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FD+LQRKGL R+T DE I AVD PPQTTRA+LRGEFI+AAQEAGRDFTVDWVHLKLN Sbjct 361 VFDVLQRKGLVKRITEDETIEAAVDTPPQTTRAKLRGEFITAAQEAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVERLIASM 447 >gi|229493446|ref|ZP_04387231.1| proteasome accessory factor PafA [Rhodococcus erythropolis SK121] gi|229319407|gb|EEN85243.1| proteasome accessory factor PafA [Rhodococcus erythropolis SK121] Length=463 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/452 (89%), Positives = 433/452 (96%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 12 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 71 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL+QLV HDRAGE VLE+LL+DAE RLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 72 HPEYATAECDSLIQLVNHDRAGERVLEELLIDAEARLAEEGIGGDIYLFKNNTDSAGNSY 131 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 132 GCHENFLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 191 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM+ETTTMLKVG+AALVLEMIE+GV+F Sbjct 192 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMAETTTMLKVGSAALVLEMIEAGVSF 251 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIREVSHDVTG++PVRLAGGRQASALDIQREY+ +AVEHL+ REP+ Q+E Sbjct 252 RDFALDNPIRAIREVSHDVTGKKPVRLAGGRQASALDIQREYHAKAVEHLRNREPDPQVE 311 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ +LS PKIAQLDLAYHDI Sbjct 312 QVVDLWGRTLDAVEAQDFAKVDTEIDWVIKRKLFQRYQDRHGFDLSDPKIAQLDLAYHDI 371 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KR RG+FD+LQRKGL RVT DE I +AV+ PPQTTRA+LRG+FI+AAQ AGRDFTVDWV Sbjct 372 KRDRGVFDVLQRKGLVKRVTEDETIDDAVENPPQTTRAKLRGDFITAAQAAGRDFTVDWV 431 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 432 HLKLNDQAQRTVLCKDPFRSVDERVERLIASM 463 >gi|302425223|sp|D0LDT3.2|PAFA_GORB4 RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme Length=452 Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust. Identities = 399/452 (89%), Positives = 428/452 (95%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFL+NGARLYLDVGS Sbjct 1 MQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLQNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL+QL+ HDRAGE VLEDLLVDAEQRL+DEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLIQLINHDRAGELVLEDLLVDAEQRLSDEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+VRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVS Sbjct 121 GCHENYLVVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSE TT+LKVG+AALVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSEMTTLLKVGSAALVLEMIEAGVVF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIRE SHD TGRRPVRLAGGRQASALDIQREY+ RAVEH+ R P+ +++ Sbjct 241 RDFALDNPIRAIREASHDPTGRRPVRLAGGRQASALDIQREYHARAVEHMTNRRPDPEMD 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 VVDLWGR LDAVE DF+KVDTE+DWVIKRKLFQRYQD+Y MELS PKIAQLDLA+HDI Sbjct 301 MVVDLWGRMLDAVERDDFSKVDTEVDWVIKRKLFQRYQDKYSMELSDPKIAQLDLAFHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+L RKGL R TTDE IA AV++PPQTTRA+LRG+FISAAQ+AGRDFTVDWV Sbjct 361 KRGRGVFDVLSRKGLVTRATTDEAIATAVNEPPQTTRAKLRGDFISAAQKAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVDRLIASM 452 >gi|343927935|ref|ZP_08767401.1| proteasome accessory factor A [Gordonia alkanivorans NBRC 16433] gi|343762158|dbj|GAA14327.1| proteasome accessory factor A [Gordonia alkanivorans NBRC 16433] Length=447 Score = 843 bits (2178), Expect = 0.0, Method: Compositional matrix adjust. Identities = 401/447 (90%), Positives = 426/447 (96%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFL+NGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLQNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSL+QL+ HDRAGE VLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLIQLINHDRAGELVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YL+VRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLVVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSE TT+LKVG+AALVLEMIE+GVAFRDF+L Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSEMTTLLKVGSAALVLEMIEAGVAFRDFAL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD TGRRPVRLAGGRQASALDIQREY+ RAVEHL R P+ +++ VVDL Sbjct 241 DNPIRAIREVSHDPTGRRPVRLAGGRQASALDIQREYHARAVEHLTNRRPDPEMDMVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE+ DFAKVDTEIDWVIKRKLFQRYQD+Y MELS PKIAQLDLA+HDIKRGRG Sbjct 301 WGRMLDAVEADDFAKVDTEIDWVIKRKLFQRYQDKYSMELSDPKIAQLDLAFHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FD+L RKGL AR TTDE I AV++PPQTTRA+LRG+FISAAQ+AGRDFTVDWVHLKLN Sbjct 361 VFDVLMRKGLVARATTDEAIKTAVNEPPQTTRAKLRGDFISAAQKAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERV RLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVDRLIASM 447 >gi|75345056|sp|P72270.1|PAFA2_RHOER RecName: Full=Pup--protein ligase 2; AltName: Full=Proteasome accessory factor A 2; AltName: Full=Pup-conjugating enzyme 2 gi|1666189|emb|CAB04769.1| ORF9(2) [Rhodococcus erythropolis] Length=447 Score = 840 bits (2171), Expect = 0.0, Method: Compositional matrix adjust. Identities = 398/447 (90%), Positives = 429/447 (96%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSL+QLV HDRAGE VLE+LL+DAE RLA+EGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLIQLVNHDRAGERVLEELLIDAEARLAEEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 +L+ RAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 FLVARAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNM+ETTTMLKVG+AALVLEMIE+GV+FRDF+L Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMAETTTMLKVGSAALVLEMIEAGVSFRDFAL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHDVTG++PVRLAGGRQASALDIQREY+ +AVEHL+ REP+ Q+EQVVDL Sbjct 241 DNPIRAIREVSHDVTGKKPVRLAGGRQASALDIQREYHAKAVEHLRNREPDPQVEQVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE+QDFAKVDTEIDWVIKRKLFQRYQDR+ +LS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRTLDAVEAQDFAKVDTEIDWVIKRKLFQRYQDRHGFDLSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FD+LQRKGL RVT DE I +AV+ PPQTTRA+LRG+FI+AAQ AGRDFTVDWVHLKLN Sbjct 361 VFDVLQRKGLVKRVTEDETIDDAVENPPQTTRAKLRGDFITAAQAAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERV+RLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVERLIASM 447 >gi|262202391|ref|YP_003273599.1| hypothetical protein Gbro_2465 [Gordonia bronchialis DSM 43247] gi|262085738|gb|ACY21706.1| protein of unknown function DUF245 domain protein [Gordonia bronchialis DSM 43247] Length=447 Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/447 (89%), Positives = 423/447 (95%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFL+NGARLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLQNGARLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDSL+QL+ HDRAGE VLEDLLVDAEQRL+DEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSLIQLINHDRAGELVLEDLLVDAEQRLSDEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 YL+VRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAAT+CLSQRAEHIWEGVSSATTR Sbjct 121 YLVVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATFCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSE TT+LKVG+AALVLEMIE+GV FRDF+L Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSEMTTLLKVGSAALVLEMIEAGVVFRDFAL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIRE SHD TGRRPVRLAGGRQASALDIQREY+ RAVEH+ R P+ +++ VVDL Sbjct 241 DNPIRAIREASHDPTGRRPVRLAGGRQASALDIQREYHARAVEHMTNRRPDPEMDMVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE DF+KVDTE+DWVIKRKLFQRYQD+Y MELS PKIAQLDLA+HDIKRGRG Sbjct 301 WGRMLDAVERDDFSKVDTEVDWVIKRKLFQRYQDKYSMELSDPKIAQLDLAFHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FD+L RKGL R TTDE IA AV++PPQTTRA+LRG+FISAAQ+AGRDFTVDWVHLKLN Sbjct 361 VFDVLSRKGLVTRATTDEAIATAVNEPPQTTRAKLRGDFISAAQKAGRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR+VDERV RLIASM Sbjct 421 DQAQRTVLCKDPFRSVDERVDRLIASM 447 >gi|333919680|ref|YP_004493261.1| Pup--protein ligase [Amycolicicoccus subflavus DQS3-9A1] gi|333481901|gb|AEF40461.1| Pup--protein ligase [Amycolicicoccus subflavus DQS3-9A1] Length=455 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 391/452 (87%), Positives = 429/452 (95%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 V+RRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 4 VRRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 63 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD L QLVTHDRAGEW+LEDLL+DAE+RLADEGIGGDIYLFKNNTDSAGNSY Sbjct 64 HPEYATAECDGLRQLVTHDRAGEWILEDLLIDAERRLADEGIGGDIYLFKNNTDSAGNSY 123 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+LIVRAGEFSRISDVLLPFLVTRQL+ GAGKVL T KAAT+CLSQRAEHIWEGVS Sbjct 124 GCHENFLIVRAGEFSRISDVLLPFLVTRQLMVGAGKVLNTAKAATFCLSQRAEHIWEGVS 183 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNM+E TT+LKVG+AALVLEMIE+GV+F Sbjct 184 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMAEPTTLLKVGSAALVLEMIEAGVSF 243 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIRE+SHD TGR+PVRLAGGRQASAL+IQREYY+RAV+ + +R+P+ ++ Sbjct 244 RDFALDNPIRAIREISHDTTGRKPVRLAGGRQASALNIQREYYSRAVDFMASRDPDPDMD 303 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QVVDLWGR LDAVE+QDF+KVDTEIDWVIKRKLFQRY+DR+ M L PKIAQ+DLAYHDI Sbjct 304 QVVDLWGRMLDAVEAQDFSKVDTEIDWVIKRKLFQRYEDRFGMSLGDPKIAQIDLAYHDI 363 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+LQRKGL +RVT D +I A+D PPQTTRA+LRGEFI+AAQ AGRDFTVDWV Sbjct 364 KRGRGVFDVLQRKGLVSRVTEDGDIKAAMDTPPQTTRAKLRGEFIAAAQAAGRDFTVDWV 423 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERV+RLIA+M Sbjct 424 HLKLNDQAQRTVLCKDPFRAVDERVERLIAAM 455 >gi|296139872|ref|YP_003647115.1| hypothetical protein Tpau_2166 [Tsukamurella paurometabola DSM 20162] gi|296028006|gb|ADG78776.1| protein of unknown function DUF245 domain protein [Tsukamurella paurometabola DSM 20162] Length=447 Score = 822 bits (2124), Expect = 0.0, Method: Compositional matrix adjust. Identities = 390/447 (88%), Positives = 419/447 (94%), Gaps = 0/447 (0%) Query 6 MGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGSHPEYA 65 MGIETEFGVTCTFHGHRRLSPDE+ARYLFRRVVSWGRSSNVFL+NG+RLYLDVGSHPEYA Sbjct 1 MGIETEFGVTCTFHGHRRLSPDEIARYLFRRVVSWGRSSNVFLQNGSRLYLDVGSHPEYA 60 Query 66 TAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHEN 125 TAECDS++QLVTHD+AGE VLEDLL+DAEQRL DEGIGGDIYLFKNNTDSAGNSYGCHEN Sbjct 61 TAECDSVLQLVTHDKAGERVLEDLLLDAEQRLQDEGIGGDIYLFKNNTDSAGNSYGCHEN 120 Query 126 YLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTR 185 +L+ R GEFSRI+DVLLPFLVTRQLICGAGKVL TPK ATYCLSQRAEHIWEGVSSATTR Sbjct 121 FLVGRVGEFSRIADVLLPFLVTRQLICGAGKVLLTPKTATYCLSQRAEHIWEGVSSATTR 180 Query 186 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSL 245 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTA LVLEMIE+GV FRDFSL Sbjct 181 SRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTATLVLEMIEAGVQFRDFSL 240 Query 246 DNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDL 305 DNPIRAIREVSHD TGR VRLAGGRQA ALDIQREYY +AVE+L TREP+ Q+ +VVDL Sbjct 241 DNPIRAIREVSHDTTGRHEVRLAGGRQAGALDIQREYYAKAVEYLATREPDEQLARVVDL 300 Query 306 WGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRG 365 WGR LDAVE+QDF+ +DTEIDWVIKRKLFQRYQD+Y M+LS PKIAQLDLAYHDIKRGRG Sbjct 301 WGRTLDAVETQDFSGIDTEIDWVIKRKLFQRYQDKYSMDLSDPKIAQLDLAYHDIKRGRG 360 Query 366 IFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLN 425 +FDLLQR+GLA R+TTDE + EAV PPQTTRA+LRG+FI+AAQ A RDFTVDWVHLKLN Sbjct 361 VFDLLQRRGLATRITTDEAVDEAVKSPPQTTRAKLRGDFITAAQAANRDFTVDWVHLKLN 420 Query 426 DQAQRTVLCKDPFRAVDERVKRLIASM 452 DQAQRTVLCKDPFR VDERV+RLIASM Sbjct 421 DQAQRTVLCKDPFRNVDERVERLIASM 447 >gi|256376373|ref|YP_003100033.1| hypothetical protein Amir_2247 [Actinosynnema mirum DSM 43827] gi|302425126|sp|C6WIE4.1|PAFA_ACTMD RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|255920676|gb|ACU36187.1| protein of unknown function DUF245 domain protein [Actinosynnema mirum DSM 43827] Length=452 Score = 791 bits (2044), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/452 (83%), Positives = 414/452 (92%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI GIETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFLRNG+RLYLDVGS Sbjct 1 MQRRIFGIETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD L QLV+HD+AGE +LEDLLVDAE+RLADEGIGGDI+LFKNNTDSAGNSY Sbjct 61 HPEYATAECDDLAQLVSHDKAGERILEDLLVDAERRLADEGIGGDIFLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ RAGEFSRI+DVLLPFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVARAGEFSRIADVLLPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNMSE TT+LKVG+A LVLEMIE GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSEVTTLLKVGSANLVLEMIEQGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIRE+SHD+TGRR V+LAGG++ASALDIQREYY RAVEH+ R P+ E Sbjct 241 RDFSLDNPIRAIREISHDLTGRRTVKLAGGKEASALDIQREYYERAVEHVAKRSPDPMAE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +V++LWGR LDA+ +QD +K+D EIDW IK +L +RYQ ++DM+LS+P+IAQLDLAYHDI Sbjct 301 RVLELWGRTLDAIAAQDLSKIDREIDWAIKHRLLERYQAKHDMDLSNPRIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG+FDLLQRKG RVT D EI A D PPQTTRA+LRG+FI+AAQ AGRDFTVDWV Sbjct 361 RRGRGVFDLLQRKGQVERVTDDGEIEAAKDTPPQTTRAKLRGDFIAAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERV+RLIAS+ Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVERLIASL 452 >gi|300786767|ref|YP_003767058.1| hypothetical protein AMED_4890 [Amycolatopsis mediterranei U32] gi|299796281|gb|ADJ46656.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] gi|340528251|gb|AEK43456.1| hypothetical protein RAM_24890 [Amycolatopsis mediterranei S699] Length=452 Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/452 (83%), Positives = 415/452 (92%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI GIETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFL NG+RLYLDVGS Sbjct 1 MQRRIFGIETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLSNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD LVQLVTHD+AGE +LEDLLVDAE+RLADEGIGGDI+LFKNNTDSAGNSY Sbjct 61 HPEYATAECDDLVQLVTHDKAGERILEDLLVDAERRLADEGIGGDIFLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ RAGEFSRI+DVLLPFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVTRAGEFSRIADVLLPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TTMLKVG+A LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMAEPTTMLKVGSANLVLEMIEAGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIRE+SHD+TGRR VRLAGGR+ASALDIQREY+ RAV+H++ A E Sbjct 241 RDFTLDNPIRAIREISHDLTGRRQVRLAGGREASALDIQREYHARAVQHIKDNGTTAANE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VV+LWGR L+AVE QDF K+DTEIDW IK +L +RY+ ++D++LS P+IAQLDLAYHDI Sbjct 301 RVVELWGRALEAVEQQDFGKIDTEIDWAIKHRLVERYRHKHDLDLSSPRIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRGIFDLLQRKGL RVT D EI A D PPQTTRA+LRG+FI+AAQ AGRDFTVDWV Sbjct 361 RRGRGIFDLLQRKGLVRRVTDDGEIEAAKDTPPQTTRAKLRGDFIAAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLI+S+ Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLISSL 452 >gi|326382284|ref|ZP_08203976.1| hypothetical protein SCNU_05061 [Gordonia neofelifaecis NRRL B-59395] gi|326199014|gb|EGD56196.1| hypothetical protein SCNU_05061 [Gordonia neofelifaecis NRRL B-59395] Length=452 Score = 786 bits (2031), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/452 (83%), Positives = 410/452 (91%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRIMGIETEFGVTCTF G RRLSPDEVARYLFRRVV+WGRSSNVFL NGARLYLDVGS Sbjct 1 MERRIMGIETEFGVTCTFKGQRRLSPDEVARYLFRRVVAWGRSSNVFLTNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDS+ QL+ HDRAGE +LE+LLVDAE+RLA EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSVAQLIAHDRAGERILEELLVDAEERLAAEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEF R+SDVLLPFLVTRQLICGAGKVL A YCLSQRA+HIWEGVS Sbjct 121 GCHENYLVSRVGEFGRVSDVLLPFLVTRQLICGAGKVLTVGHEARYCLSQRADHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVG+A LVLEMIESG++F Sbjct 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGSALLVLEMIESGISF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 DF+LDNPIRAIR++SHD +GRR +RLAGGR A+AL +QREY+ RAV+HL TR P+ ++ Sbjct 241 HDFALDNPIRAIRDISHDPSGRREIRLAGGRTATALAVQREYHARAVQHLATRTPDPTLD 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VVDLWGR LDAVES D++ VDTEIDWVIKRKL QRYQDRY MEL+ PKIAQLDLAYHDI Sbjct 301 RVVDLWGRVLDAVESDDYSGVDTEIDWVIKRKLLQRYQDRYSMELTDPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG+FDLL RKGLAARVTTDEEI A PPQTTRA+LRG+FI+AAQ+AGRDFTVDWV Sbjct 361 RRGRGVFDLLSRKGLAARVTTDEEIDAATSTPPQTTRAKLRGDFITAAQKAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLK+NDQAQR VLCKDPFR VDERV RLIASM Sbjct 421 HLKINDQAQRNVLCKDPFRNVDERVDRLIASM 452 >gi|302527212|ref|ZP_07279554.1| proteasome accessory factor A [Streptomyces sp. AA4] gi|302436107|gb|EFL07923.1| proteasome accessory factor A [Streptomyces sp. AA4] Length=452 Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/452 (83%), Positives = 413/452 (92%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI GIETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFL NG+RLYLDVGS Sbjct 1 MQRRIFGIETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLSNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD L QLVTHD+AGE +LEDLLVDAE+RLADEGIGGDI+LFKNNTDSAGNSY Sbjct 61 HPEYATAECDDLTQLVTHDKAGERILEDLLVDAERRLADEGIGGDIFLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ RAGEFSRI+DVLLPFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVTRAGEFSRIADVLLPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TTMLK+G+A LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMAEPTTMLKIGSANLVLEMIEAGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIRE+SHD+TGRR VRLAGGR+ASALDIQREY+ RAV+HL+ E Sbjct 241 RDFTLDNPIRAIREISHDLTGRRQVRLAGGREASALDIQREYHARAVQHLKENGSTPANE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VV+LWGR L+AVE QDF+K+DTEIDW IK +L +RY+ ++D++LS P++AQLDLAYHDI Sbjct 301 RVVELWGRALEAVEEQDFSKIDTEIDWAIKHRLVERYRAKHDLDLSSPRVAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRGIFDLLQRKGL RVT D EI A D PPQTTRA+LRG+FI+AAQ AGRDFTVDWV Sbjct 361 RRGRGIFDLLQRKGLVRRVTDDGEIEAAKDTPPQTTRAKLRGDFIAAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLI S+ Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLIGSL 452 >gi|331697097|ref|YP_004333336.1| proteasome accessory factor PafA [Pseudonocardia dioxanivorans CB1190] gi|326951786|gb|AEA25483.1| proteasome accessory factor PafA [Pseudonocardia dioxanivorans CB1190] Length=453 Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/453 (83%), Positives = 412/453 (91%), Gaps = 1/453 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI G+ETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIYGVETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QLV HD+AGE +LEDLLVDAE+RL DEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLTQLVAHDKAGERILEDLLVDAERRLVDEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEFSRI+DVLLPFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVARQGEFSRIADVLLPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNMSE TT+LKVG+A LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSEVTTLLKVGSATLVLEMIEAGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTR-EPNAQI 299 RDF+LDNPIRAIRE+SHD+TGRR VRLAGGR+ASALDIQREY+ RAVEHLQ R + + Sbjct 241 RDFTLDNPIRAIREISHDLTGRRTVRLAGGREASALDIQREYHARAVEHLQARGSEDRTM 300 Query 300 EQVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHD 359 E+VV+LWGR LDAVE+Q+ + +D EIDW IK +L +RY+ R+D++L+H +IAQLDLAYHD Sbjct 301 ERVVELWGRVLDAVETQNLSLIDREIDWAIKHRLVERYRQRHDLDLAHARIAQLDLAYHD 360 Query 360 IKRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDW 419 I+RGRG+FDLLQRKG RVT D EI A D PPQTTRA+LRG+FI+AAQ AGRDFTVDW Sbjct 361 IRRGRGLFDLLQRKGTVERVTDDGEIEAAKDTPPQTTRAKLRGDFIAAAQAAGRDFTVDW 420 Query 420 VHLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 VHLKLNDQAQRTVLCKDPFRAVDERV RLIAS+ Sbjct 421 VHLKLNDQAQRTVLCKDPFRAVDERVDRLIASL 453 >gi|325002968|ref|ZP_08124080.1| hypothetical protein PseP1_29575 [Pseudonocardia sp. P1] Length=453 Score = 781 bits (2016), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/453 (82%), Positives = 413/453 (92%), Gaps = 1/453 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI G+ETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIFGVETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QLV HD+AGE +LEDLLVDAE+RL DEGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDSLTQLVAHDKAGERILEDLLVDAERRLVDEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEFSRI+DVLLPFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVARQGEFSRIADVLLPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNMSE TT+LKVGTA LVLEMIE+GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSEVTTLLKVGTATLVLEMIEAGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTR-EPNAQI 299 RDF+LDNPIRAIRE+SHD+TGRRPVR+AGGR+ASALDIQREY+ RAVE LQ+R + + Sbjct 241 RDFTLDNPIRAIREISHDLTGRRPVRMAGGREASALDIQREYHARAVEFLQSRGHEDKVM 300 Query 300 EQVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHD 359 E+VV+LWGR LDAVESQ+ + +D EIDW IK +L +RY++++D+ELS +IAQLDLAYHD Sbjct 301 ERVVELWGRTLDAVESQNLSLIDREIDWAIKHRLVERYREKHDLELSSARIAQLDLAYHD 360 Query 360 IKRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDW 419 ++RGRG+FD+LQRK L RVT D EI A D PPQ+TRA+LRG+FI+AAQ AGRDFTVDW Sbjct 361 VRRGRGLFDMLQRKDLVDRVTDDGEIEAAKDTPPQSTRAKLRGDFIAAAQAAGRDFTVDW 420 Query 420 VHLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 VHLKLNDQAQRTVLCKDPFRAVDERV RLIAS+ Sbjct 421 VHLKLNDQAQRTVLCKDPFRAVDERVDRLIASL 453 >gi|134098823|ref|YP_001104484.1| hypothetical protein SACE_2254 [Saccharopolyspora erythraea NRRL 2338] gi|291005820|ref|ZP_06563793.1| hypothetical protein SeryN2_14968 [Saccharopolyspora erythraea NRRL 2338] gi|302425169|sp|A4FBY4.1|PAFA_SACEN RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|133911446|emb|CAM01559.1| hypothetical protein SACE_2254 [Saccharopolyspora erythraea NRRL 2338] Length=452 Score = 776 bits (2003), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/452 (81%), Positives = 411/452 (91%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI GIETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MQRRIFGIETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD LVQLVTHD+AGE +LEDLL+DAE+RL+DEGIGGDI+LFKNNTDSAGNSY Sbjct 61 HPEYATAECDDLVQLVTHDKAGERILEDLLIDAERRLSDEGIGGDIFLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R+GEFSRI+DVLLPFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVGRSGEFSRIADVLLPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNMSE TT+LKVG A LVLEM+E GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSEVTTLLKVGAANLVLEMVEQGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDFSLDNPIRAIRE+SHD+TGRR VRLAGGR+ASALDIQREYY RAV+H+ R + E Sbjct 241 RDFSLDNPIRAIREISHDLTGRRTVRLAGGREASALDIQREYYGRAVDHVARRGSDPMSE 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +++DLWGR LDAVE QD++ +D E+DW IK +L +RY++++ +ELS P+IAQLDLAYHDI Sbjct 301 RILDLWGRALDAVEHQDYSLIDREVDWAIKLRLLERYRNKHGLELSSPRIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG+FD+LQRK L R T D EI A D PPQ+TRA+LRG+FI+AAQ AGRDFTVDWV Sbjct 361 RRGRGLFDMLQRKDLVDRATEDGEIEAAKDTPPQSTRAKLRGDFIAAAQAAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRAVDERV+RLI+S+ Sbjct 421 HLKLNDQAQRTVLCKDPFRAVDERVERLISSL 452 >gi|257056202|ref|YP_003134034.1| putative proteasome component/hypothetical protein [Saccharomonospora viridis DSM 43017] gi|302425170|sp|C7MWV3.1|PAFA_SACVD RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|256586074|gb|ACU97207.1| putative proteasome component/protein of unknown function, DUF275 [Saccharomonospora viridis DSM 43017] Length=452 Score = 775 bits (2001), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/452 (80%), Positives = 412/452 (92%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRI GIETEFGVTCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFL NG+RLYLDVGS Sbjct 1 MQRRIFGIETEFGVTCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLSNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD L QLVTHD+AGE +LEDLL+DAE+RLA+EGIGGDI+LFKNNTDSAGNSY Sbjct 61 HPEYATAECDDLAQLVTHDKAGERILEDLLIDAERRLAEEGIGGDIFLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ RAGEFSR++DVLLPFLVTRQL+CGAGKVLQTP+ YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVTRAGEFSRVADVLLPFLVTRQLVCGAGKVLQTPRGGVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TT+LKVG+ LVL+MIE GV F Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMAEPTTLLKVGSVHLVLQMIEEGVQF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+LDNPIRAIRE+SHD+TGRR VRLAGGR+ASAL+IQREYY RAV+H+++ +P+ + Sbjct 241 RDFTLDNPIRAIREISHDLTGRRQVRLAGGREASALEIQREYYARAVQHVESGDPSPTTQ 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 ++DLWGR LDAVE QDF+ +DTEIDW IK +L +RY+ ++++ LS P++AQLDLAYHDI Sbjct 301 YLIDLWGRALDAVEQQDFSSIDTEIDWAIKHRLVERYRSKHNLTLSDPRVAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG+FDLLQRKG+ R+T D EI A D PPQTTRA+LRG+FI+AAQEAGRDFTVDWV Sbjct 361 RRGRGVFDLLQRKGMVRRITDDGEIELAKDSPPQTTRAKLRGDFIAAAQEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFR+VDERV+RLI S+ Sbjct 421 HLKLNDQAQRTVLCKDPFRSVDERVERLINSL 452 >gi|296394012|ref|YP_003658896.1| hypothetical protein Srot_1603 [Segniliparus rotundus DSM 44985] gi|296181159|gb|ADG98065.1| protein of unknown function DUF245 domain protein [Segniliparus rotundus DSM 44985] Length=465 Score = 769 bits (1987), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/452 (81%), Positives = 409/452 (91%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRIMGIETE+GVTC F GHRRLSPDEVARYLFR+VV WGRSSNVFL NG+RLYLDVGS Sbjct 1 MRRRIMGIETEYGVTCMFKGHRRLSPDEVARYLFRKVVCWGRSSNVFLPNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QL+ HDRAGE +LE LL++AE LA+EGIGGD+YLFKNNTDS GNSY Sbjct 61 HPEYATAECDSLRQLLAHDRAGERILEGLLLEAEASLAEEGIGGDVYLFKNNTDSTGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+VRAGEFSR+SDVLLPFLVTRQLICGAGKVL TPK A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVVRAGEFSRVSDVLLPFLVTRQLICGAGKVLSTPKEARYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE YRRLHVIVGDSNM+E TT LKVG+ AL+LEMIE+GVAF Sbjct 181 SATTRSRPIINTRDEPHADAELYRRLHVIVGDSNMAEPTTFLKVGSTALILEMIEAGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RD++LDNPIRAIREVSHD TGRR VRL GGR ASAL+IQREY+ +AVE+L + EP+ ++ Sbjct 241 RDYALDNPIRAIREVSHDTTGRRQVRLVGGRHASALEIQREYHGKAVEYLHSTEPSTELA 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 VVDLWGR LDAVESQDFAKVDTEIDW+IKRKLFQRY++++ +L HPKIAQLDLAYHDI Sbjct 301 SVVDLWGRVLDAVESQDFAKVDTEIDWIIKRKLFQRYEEKHGFDLLHPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+L+ +GL + V ++EI +A + PQTTRARLRGEFI+AA +AGRDFTVDWV Sbjct 361 KRGRGVFDILRSRGLVSTVVGEDEIEKAKEVAPQTTRARLRGEFITAATQAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPF+AVDERV R+IAS+ Sbjct 421 HLKLNDQAQRTVLCKDPFKAVDERVDRMIASL 452 >gi|317507300|ref|ZP_07965042.1| hypothetical protein HMPREF9336_01414 [Segniliparus rugosus ATCC BAA-974] gi|316254403|gb|EFV13731.1| hypothetical protein HMPREF9336_01414 [Segniliparus rugosus ATCC BAA-974] Length=457 Score = 763 bits (1970), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/452 (81%), Positives = 410/452 (91%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRIMGIETE+GVTC F GHRRLSPDEVARYLFR+VV WGRSSNVFL NG+RLYLDVGS Sbjct 1 MRRRIMGIETEYGVTCMFKGHRRLSPDEVARYLFRKVVCWGRSSNVFLPNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECDSL QLV HDR+GE +LE LL++AE LA+EGIGGD+YLFKNNTDS GNSY Sbjct 61 HPEYATAECDSLRQLVAHDRSGERILEGLLLEAEASLAEEGIGGDVYLFKNNTDSTGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+VRAGEFSR+SDVLLPFLVTRQLICGAGKVL TPK A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVVRAGEFSRVSDVLLPFLVTRQLICGAGKVLSTPKEARYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE YRRLHVIVGDSNM+E TT+LKVG+ AL+LEMIE+GVAF Sbjct 181 SATTRSRPIINTRDEPHADAELYRRLHVIVGDSNMAEPTTLLKVGSTALILEMIEAGVAF 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RD++LDNPIRAIREVSHD TG R VRL GGR ASAL+IQREY+ +AVE+L + E ++++ Sbjct 241 RDYALDNPIRAIREVSHDTTGMRQVRLVGGRHASALEIQREYHNKAVEYLNSTESSSELS 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 VVDLWGR LDAVESQDFAKVDTEIDW+IKRKLFQRY++++ +L+HPKIAQLDLAYHDI Sbjct 301 SVVDLWGRVLDAVESQDFAKVDTEIDWIIKRKLFQRYEEKHGFDLTHPKIAQLDLAYHDI 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 KRGRG+FD+L+++GL + V D+E+ A + PQTTRARLRGEFI+AA EAGRDFTVDWV Sbjct 361 KRGRGVFDILRKRGLVSTVVDDDEVETAKEVAPQTTRARLRGEFITAATEAGRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPF+AVDERV RLIAS+ Sbjct 421 HLKLNDQAQRTVLCKDPFKAVDERVDRLIASL 452 >gi|289443602|ref|ZP_06433346.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289416521|gb|EFD13761.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Mycobacterium tuberculosis T46] Length=374 Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/371 (100%), Positives = 371/371 (100%), Gaps = 0/371 (0%) Query 82 GEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHENYLIVRAGEFSRISDVL 141 GEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHENYLIVRAGEFSRISDVL Sbjct 4 GEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSYGCHENYLIVRAGEFSRISDVL 63 Query 142 LPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTRSRPIINTRDEPHADAE 201 LPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTRSRPIINTRDEPHADAE Sbjct 64 LPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVSSATTRSRPIINTRDEPHADAE 123 Query 202 KYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSLDNPIRAIREVSHDVTG 261 KYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSLDNPIRAIREVSHDVTG Sbjct 124 KYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAFRDFSLDNPIRAIREVSHDVTG 183 Query 262 RRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDLWGRQLDAVESQDFAKV 321 RRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDLWGRQLDAVESQDFAKV Sbjct 184 RRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIEQVVDLWGRQLDAVESQDFAKV 243 Query 322 DTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRGIFDLLQRKGLAARVTT 381 DTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRGIFDLLQRKGLAARVTT Sbjct 244 DTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDIKRGRGIFDLLQRKGLAARVTT 303 Query 382 DEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLNDQAQRTVLCKDPFRAV 441 DEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLNDQAQRTVLCKDPFRAV Sbjct 304 DEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWVHLKLNDQAQRTVLCKDPFRAV 363 Query 442 DERVKRLIASM 452 DERVKRLIASM Sbjct 364 DERVKRLIASM 374 >gi|258653131|ref|YP_003202287.1| hypothetical protein Namu_2960 [Nakamurella multipartita DSM 44233] gi|302425212|sp|C8XAP5.1|PAFA_NAKMY RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|258556356|gb|ACV79298.1| protein of unknown function DUF245 domain protein [Nakamurella multipartita DSM 44233] Length=452 Score = 724 bits (1869), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/452 (75%), Positives = 392/452 (87%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 +QRRIMGIETEFG+TCTFHG RRLSPDEVARYLFRRVVSWGRSSNVFLRNG+RLYLDVGS Sbjct 1 MQRRIMGIETEFGITCTFHGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGSRLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYATAECD L L+ HD+AGE +L+DL+VDAE RLA+EGIGGDIYLFKNNTDSAGNSY Sbjct 61 HPEYATAECDELPVLIAHDKAGERILQDLVVDAETRLAEEGIGGDIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHEN+LI R GEF++I+D L+PFLVTRQLI GAGKVLQ+P+ A+YCLSQRA+HIWEGVS Sbjct 121 GCHENFLIARGGEFAKIADGLIPFLVTRQLIAGAGKVLQSPRGASYCLSQRADHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNMSETTT+LKVGTAALVLEMIESGV Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMSETTTLLKVGTAALVLEMIESGVPM 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RDF+ +NPIRAIRE+SHD TGR+ VRLAGG SALD Q EYY +A + R + Sbjct 241 RDFTFENPIRAIREISHDTTGRKAVRLAGGGDISALDAQTEYYEKAAAFVANRGTDPVTH 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 QV+DLW R L+AV++QDF KVDTEIDW+IK+KL Y ++ ++L+HP+IAQLDL YHD+ Sbjct 301 QVLDLWRRTLEAVQTQDFTKVDTEIDWIIKKKLIDAYAAKHGLDLTHPRIAQLDLTYHDV 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 + GRG+ LL +G AARV TD +I A+ PPQTTRARLRGEF++AAQ+AGRD+TVDWV Sbjct 361 RPGRGLHSLLAARGRAARVVTDGQITTAMTVPPQTTRARLRGEFVAAAQDAGRDYTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVL KDPFR+ D+RV +LI +M Sbjct 421 HLKLNDQAQRTVLLKDPFRSTDDRVTKLIEAM 452 >gi|238064539|ref|ZP_04609248.1| hypothetical protein MCAG_05505 [Micromonospora sp. ATCC 39149] gi|237886350|gb|EEP75178.1| hypothetical protein MCAG_05505 [Micromonospora sp. ATCC 39149] Length=452 Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/452 (76%), Positives = 391/452 (87%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRI G+ETE+GVTCT+ G RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MERRIFGLETEYGVTCTYRGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYAT ECDS+V LV HDRAGE +LE LLVDAE+RL DEGI G+IYLFKNNTDSAGNSY Sbjct 61 HPEYATPECDSVVDLVAHDRAGERILEGLLVDAEKRLHDEGIAGEIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEF R++DVL+PFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVSRHGEFGRLADVLIPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TT+LKVG+A +VL MIE+GV Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMNEVTTLLKVGSADIVLRMIEAGVVM 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RD SL+NPIRAIREVSHD+TGRR VRLA G++ SAL+IQ+EY +A E ++ R + + Sbjct 241 RDLSLENPIRAIREVSHDITGRRKVRLASGKEVSALEIQQEYLAKATEFVERRGGDQTAK 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VV+LWGR L AVE+ D V EIDWV K +L +RYQ ++D+ LSHP++AQ+DLAYHD+ Sbjct 301 RVVELWGRVLRAVETGDLEPVSREIDWVSKLRLIERYQRKHDLPLSHPRVAQMDLAYHDL 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG++ LL+R+G RV TD EI EA + PPQTTRARLRGEFI AQE RDFTVDWV Sbjct 361 RRGRGLYGLLERRGQVDRVATDPEIFEAKETPPQTTRARLRGEFIRHAQEKRRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRA DERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAYDERVERLIASM 452 >gi|302867421|ref|YP_003836058.1| hypothetical protein Micau_2951 [Micromonospora aurantiaca ATCC 27029] gi|315506169|ref|YP_004085056.1| hypothetical protein ML5_5437 [Micromonospora sp. L5] gi|302570280|gb|ADL46482.1| protein of unknown function DUF245 domain protein [Micromonospora aurantiaca ATCC 27029] gi|315412788|gb|ADU10905.1| protein of unknown function DUF245 domain protein [Micromonospora sp. L5] Length=452 Score = 714 bits (1844), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/452 (76%), Positives = 389/452 (87%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRI G+ETE+GVTCT+ G RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MERRIFGLETEYGVTCTYRGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYAT ECDS+ LV HDRAGE +LE LLVDAE+RL DEGI G+IYLFKNNTDSAGNSY Sbjct 61 HPEYATPECDSVTDLVAHDRAGERILEGLLVDAEKRLHDEGIAGEIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEF R++DVL+PFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVSRHGEFGRLADVLIPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TT+LKVGTA +VL MIE+GV Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMNEVTTLLKVGTADIVLRMIEAGVVM 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RD +L+NPIRAIREVSHD+TGRR VRLA G++ SAL+IQ+EY +A E ++ R + + Sbjct 241 RDLTLENPIRAIREVSHDITGRRKVRLASGKEVSALEIQQEYLAKATEFVERRGGDQTAK 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VVDLWGR L AVE+ D V EIDWV K KL +RYQ ++D+ LSHP++AQ+DLAYHD+ Sbjct 301 RVVDLWGRVLRAVETGDLDPVAREIDWVTKLKLIERYQRKHDLPLSHPRVAQMDLAYHDL 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG++ LL+R+ RV TD EI EA + PPQTTRARLRGEFI AQE RDFTVDWV Sbjct 361 RRGRGLYGLLERRREVDRVATDPEIFEAKETPPQTTRARLRGEFIRHAQEKRRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRA DERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAYDERVERLIASM 452 >gi|145594778|ref|YP_001159075.1| hypothetical protein Strop_2247 [Salinispora tropica CNB-440] gi|302425172|sp|A4X747.1|PAFA_SALTO RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|145304115|gb|ABP54697.1| protein of unknown function DUF245 domain protein [Salinispora tropica CNB-440] Length=452 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/452 (75%), Positives = 388/452 (86%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRI G+ETE+GVTCT+ G RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MERRIFGLETEYGVTCTYRGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYAT ECDS+ LV HDRAGE +LE LLVDAE+RL DEGI G+IYLFKNNTDSAGNSY Sbjct 61 HPEYATPECDSVADLVAHDRAGERILEGLLVDAEKRLHDEGIAGEIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEF R++DVL+PFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVSRHGEFGRLADVLIPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TT+LKVG A +VL MIESGV Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMNEVTTLLKVGAADIVLRMIESGVVM 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RD +L+NPIRAIREVSHD+TGRR VRLA G++ SAL+IQ+EY +A E ++ R + + Sbjct 241 RDLTLENPIRAIREVSHDITGRRKVRLASGKEISALEIQQEYLAKATEFVERRGGDQTAK 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VV+LWGR L AVE+ D V EIDWV K +L +RYQ ++D+ LSHP++AQ+DLAYHD+ Sbjct 301 RVVELWGRVLSAVETGDLEPVAREIDWVTKLRLIERYQRKHDLPLSHPRVAQMDLAYHDL 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG++ LL+R+G R TD EI EA + PPQTTRARLRGEFI AQE RDFTVDWV Sbjct 361 RRGRGLYGLLERRGQVDRAATDPEIFEAKETPPQTTRARLRGEFIRHAQEKRRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRA DERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAYDERVERLIASM 452 >gi|159037960|ref|YP_001537213.1| hypothetical protein Sare_2364 [Salinispora arenicola CNS-205] gi|302425171|sp|A8M2A6.1|PAFA_SALAI RecName: Full=Pup--protein ligase; AltName: Full=Proteasome accessory factor A; AltName: Full=Pup-conjugating enzyme gi|157916795|gb|ABV98222.1| protein of unknown function DUF245 domain protein [Salinispora arenicola CNS-205] Length=452 Score = 712 bits (1839), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/452 (75%), Positives = 388/452 (86%), Gaps = 0/452 (0%) Query 1 VQRRIMGIETEFGVTCTFHGHRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 ++RRI G+ETE+GVTCT+ G RRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS Sbjct 1 MERRIFGLETEYGVTCTYRGQRRLSPDEVARYLFRRVVSWGRSSNVFLRNGARLYLDVGS 60 Query 61 HPEYATAECDSLVQLVTHDRAGEWVLEDLLVDAEQRLADEGIGGDIYLFKNNTDSAGNSY 120 HPEYAT ECDS+ LV HDRAGE +LE LLVDAE+RL DEGI G+IYLFKNNTDSAGNSY Sbjct 61 HPEYATPECDSVADLVAHDRAGERILEGLLVDAEKRLHDEGIAGEIYLFKNNTDSAGNSY 120 Query 121 GCHENYLIVRAGEFSRISDVLLPFLVTRQLICGAGKVLQTPKAATYCLSQRAEHIWEGVS 180 GCHENYL+ R GEF R++DVL+PFLVTRQLICGAGKVLQTP+ A YCLSQRAEHIWEGVS Sbjct 121 GCHENYLVSRHGEFGRLADVLIPFLVTRQLICGAGKVLQTPRGAVYCLSQRAEHIWEGVS 180 Query 181 SATTRSRPIINTRDEPHADAEKYRRLHVIVGDSNMSETTTMLKVGTAALVLEMIESGVAF 240 SATTRSRPIINTRDEPHADAE+YRRLHVIVGDSNM+E TT+LKVG A +VL MIESGV Sbjct 181 SATTRSRPIINTRDEPHADAERYRRLHVIVGDSNMNEVTTLLKVGAADIVLRMIESGVVM 240 Query 241 RDFSLDNPIRAIREVSHDVTGRRPVRLAGGRQASALDIQREYYTRAVEHLQTREPNAQIE 300 RD +L+NPIRAIREVSHD+TGRR VRLA G++ SAL+IQ+EY +A E ++ R + + Sbjct 241 RDLTLENPIRAIREVSHDITGRRKVRLASGKEISALEIQQEYLAKATEFVERRGGDQTAK 300 Query 301 QVVDLWGRQLDAVESQDFAKVDTEIDWVIKRKLFQRYQDRYDMELSHPKIAQLDLAYHDI 360 +VV+LWGR L AVE+ D V EIDWV K +L +RYQ ++D+ LSHP++AQ+DLAYHD+ Sbjct 301 RVVELWGRVLRAVETGDLDPVAREIDWVTKLRLIERYQGKHDLPLSHPRVAQMDLAYHDL 360 Query 361 KRGRGIFDLLQRKGLAARVTTDEEIAEAVDQPPQTTRARLRGEFISAAQEAGRDFTVDWV 420 +RGRG++ LL+R+G R TD EI EA + PPQTTRARLRGEFI AQE RDFTVDWV Sbjct 361 RRGRGLYGLLERRGQVDRAATDPEIFEAKETPPQTTRARLRGEFIRHAQEKRRDFTVDWV 420 Query 421 HLKLNDQAQRTVLCKDPFRAVDERVKRLIASM 452 HLKLNDQAQRTVLCKDPFRA DERV+RLIASM Sbjct 421 HLKLNDQAQRTVLCKDPFRAYDERVERLIASM 452 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 939989406426 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40