BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2098c
Length=434
Score E
Sequences producing significant alignments: (Bits) Value
gi|7442083|pir||E70768 hypothetical glycine-rich protein Rv2098c... 712 0.0
gi|306780127|ref|ZP_07418464.1| PE family protein [Mycobacterium... 184 2e-44
gi|289745374|ref|ZP_06504752.1| PE family protein [Mycobacterium... 184 4e-44
gi|323719340|gb|EGB28480.1| PE family protein [Mycobacterium tub... 183 4e-44
gi|289443603|ref|ZP_06433347.1| PE PGRS family protein [Mycobact... 183 5e-44
gi|289574779|ref|ZP_06455006.1| LOW QUALITY PROTEIN: PE-PGRS fam... 183 5e-44
gi|340627111|ref|YP_004745563.1| PE-PGRS family protein [Mycobac... 183 5e-44
gi|15841589|ref|NP_336626.1| PE family-related protein [Mycobact... 183 5e-44
gi|289447720|ref|ZP_06437464.1| PE-PGRS family protein [Mycobact... 183 5e-44
gi|306797954|ref|ZP_07436256.1| PE family protein [Mycobacterium... 183 5e-44
gi|148661913|ref|YP_001283436.1| PE-PGRS family protein [Mycobac... 138 2e-30
gi|183981609|ref|YP_001849900.1| PE-PGRS family protein [Mycobac... 101 3e-19
gi|339296212|gb|AEJ48323.1| hypothetical protein CCDC5079_3134 [... 100 5e-19
gi|340627170|ref|YP_004745622.1| PE-PGRS family protein [Mycobac... 100 5e-19
gi|339632193|ref|YP_004723835.1| PE-PGRS family protein [Mycobac... 100 6e-19
gi|289447790|ref|ZP_06437534.1| PE-PGRS family protein [Mycobact... 100 6e-19
gi|253797511|ref|YP_003030512.1| PE-PGRS family protein [Mycobac... 99.4 1e-18
gi|289552831|ref|ZP_06442041.1| LOW QUALITY PROTEIN: predicted p... 99.4 1e-18
gi|148824595|ref|YP_001289349.1| PE-PGRS family protein [Mycobac... 95.5 1e-17
gi|183982114|ref|YP_001850405.1| PE-PGRS family protein [Mycobac... 95.1 2e-17
gi|148663252|ref|YP_001284775.1| PE-PGRS family protein [Mycobac... 94.7 3e-17
gi|57117101|ref|YP_177968.1| PE-PGRS family protein [Mycobacteri... 94.0 4e-17
gi|15842981|ref|NP_338018.1| PE_PGRS family protein [Mycobacteri... 94.0 5e-17
gi|339633393|ref|YP_004725035.1| PE-PGRS family protein [Mycobac... 93.6 5e-17
gi|254232261|ref|ZP_04925588.1| PE-PGRS family protein [Mycobact... 92.8 1e-16
gi|297731668|ref|ZP_06960786.1| hypothetical protein MtubKR_1129... 92.4 1e-16
gi|297634680|ref|ZP_06952460.1| hypothetical protein MtubK4_1118... 92.4 1e-16
gi|313659003|ref|ZP_07815883.1| hypothetical protein MtubKV_1130... 92.4 1e-16
gi|289762260|ref|ZP_06521638.1| PE-PGRS family protein [Mycobact... 92.0 2e-16
gi|148823312|ref|YP_001288066.1| PE-PGRS family protein [Mycobac... 91.7 2e-16
gi|340626466|ref|YP_004744918.1| PE-PGRS family protein [Mycobac... 89.0 2e-15
gi|340626464|ref|YP_004744916.1| PE-PGRS family protein [Mycobac... 88.6 2e-15
gi|340627846|ref|YP_004746298.1| PE-PGRS family protein [Mycobac... 88.2 3e-15
gi|339294426|gb|AEJ46537.1| putative PE family protein [Mycobact... 86.7 8e-15
gi|339298064|gb|AEJ50174.1| putative PE family protein [Mycobact... 86.7 8e-15
gi|183982606|ref|YP_001850897.1| PE-PGRS family protein [Mycobac... 86.7 8e-15
gi|57116865|ref|YP_177812.1| PE-PGRS family protein [Mycobacteri... 86.3 9e-15
gi|339631822|ref|YP_004723464.1| PE-PGRS family protein [Mycobac... 86.3 1e-14
gi|253799501|ref|YP_003032502.1| hypothetical protein TBMG_02531... 86.3 1e-14
gi|339631517|ref|YP_004723159.1| PE-PGRS family protein [Mycobac... 86.3 1e-14
gi|121637380|ref|YP_977603.1| PE-PGRS family protein [Mycobacter... 85.9 1e-14
gi|339631519|ref|YP_004723161.1| PE-PGRS family protein [Mycobac... 85.9 1e-14
gi|15840909|ref|NP_335946.1| PE_PGRS family protein [Mycobacteri... 85.9 1e-14
gi|339294428|gb|AEJ46539.1| hypothetical protein CCDC5079_1349 [... 85.9 1e-14
gi|339298066|gb|AEJ50176.1| hypothetical protein CCDC5180_1339 [... 85.9 1e-14
gi|57116866|ref|YP_177813.1| PE-PGRS family protein [Mycobacteri... 85.9 1e-14
gi|148661242|ref|YP_001282765.1| PE-PGRS family protein [Mycobac... 85.9 1e-14
gi|148822669|ref|YP_001287423.1| PE-PGRS family protein [Mycobac... 85.9 1e-14
gi|31792646|ref|NP_855139.1| PE-PGRS family protein [Mycobacteri... 85.9 1e-14
gi|31792644|ref|NP_855137.1| PE-PGRS family protein [Mycobacteri... 85.9 1e-14
>gi|7442083|pir||E70768 hypothetical glycine-rich protein Rv2098c - Mycobacterium tuberculosis
(strain H37RV)
gi|38490308|emb|CAE55452.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=434
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/434 (100%), Positives = 434/434 (100%), Gaps = 0/434 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGSAGLIGNGGRGGNGAPGGAG 120
GADGASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGSAGLIGNGGRGGNGAPGGAG
Sbjct 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGSAGLIGNGGRGGNGAPGGAG 120
Query 121 GNGGLGGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGAGGNGGDGG 180
GNGGLGGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGAGGNGGDGG
Sbjct 121 GNGGLGGLLLGNGGAGGVGGTGDNGVGDLGAGGGGGDGGLGGRAGLIGHGGAGGNGGDGG 180
Query 181 HGGSGKAGGSGGSGGFGQFGGAGGLLYGNGGAAGSGGNGGDAGTGVSSDGFAGLGGSGGR 240
HGGSGKAGGSGGSGGFGQFGGAGGLLYGNGGAAGSGGNGGDAGTGVSSDGFAGLGGSGGR
Sbjct 181 HGGSGKAGGSGGSGGFGQFGGAGGLLYGNGGAAGSGGNGGDAGTGVSSDGFAGLGGSGGR 240
Query 241 GGDAGLIGVGGGGGGNGGDPGLGARLFQVGSRGGDGGVGGWLYGDGGGGGDGGNGGLPFI 300
GGDAGLIGVGGGGGGNGGDPGLGARLFQVGSRGGDGGVGGWLYGDGGGGGDGGNGGLPFI
Sbjct 241 GGDAGLIGVGGGGGGNGGDPGLGARLFQVGSRGGDGGVGGWLYGDGGGGGDGGNGGLPFI 300
Query 301 GSTNAGNGGSARLIGNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGG 360
GSTNAGNGGSARLIGNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGG
Sbjct 301 GSTNAGNGGSARLIGNGGAGGSGGSGAPGSVSSGGVGGAGNPGGSGGNGGVWYGNGGAGG 360
Query 361 AAGQGGPGMNTTSPGGPGGVGGHGGTAILFGDGGAGGAGAAGGPGTPDGAAGPGGSGGTG 420
AAGQGGPGMNTTSPGGPGGVGGHGGTAILFGDGGAGGAGAAGGPGTPDGAAGPGGSGGTG
Sbjct 361 AAGQGGPGMNTTSPGGPGGVGGHGGTAILFGDGGAGGAGAAGGPGTPDGAAGPGGSGGTG 420
Query 421 GLLFGVPGPSGPDG 434
GLLFGVPGPSGPDG
Sbjct 421 GLLFGVPGPSGPDG 434
>gi|306780127|ref|ZP_07418464.1| PE family protein [Mycobacterium tuberculosis SUMu002]
gi|308326955|gb|EFP15806.1| PE family protein [Mycobacterium tuberculosis SUMu002]
Length=295
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|289745374|ref|ZP_06504752.1| PE family protein [Mycobacterium tuberculosis 02_1987]
gi|289685902|gb|EFD53390.1| PE family protein [Mycobacterium tuberculosis 02_1987]
Length=366
Score = 184 bits (466), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|323719340|gb|EGB28480.1| PE family protein [Mycobacterium tuberculosis CDC1551A]
Length=326
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|289443603|ref|ZP_06433347.1| PE PGRS family protein [Mycobacterium tuberculosis T46]
gi|289416522|gb|EFD13762.1| PE PGRS family protein [Mycobacterium tuberculosis T46]
Length=491
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|289574779|ref|ZP_06455006.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis
K85]
gi|289539210|gb|EFD43788.1| LOW QUALITY PROTEIN: PE-PGRS family protein [Mycobacterium tuberculosis
K85]
Length=490
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|340627111|ref|YP_004745563.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
gi|340005301|emb|CCC44457.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=489
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|15841589|ref|NP_336626.1| PE family-related protein [Mycobacterium tuberculosis CDC1551]
gi|31793281|ref|NP_855774.1| hypothetical protein Mb2125c [Mycobacterium bovis AF2122/97]
gi|121637983|ref|YP_978207.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
16 more sequence titles
Length=491
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|289447720|ref|ZP_06437464.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
gi|289420678|gb|EFD17879.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
Length=304
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|306797954|ref|ZP_07436256.1| PE family protein [Mycobacterium tuberculosis SUMu006]
gi|308341734|gb|EFP30585.1| PE family protein [Mycobacterium tuberculosis SUMu006]
Length=350
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 91/92 (99%), Positives = 91/92 (99%), Gaps = 0/92 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
QSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD
Sbjct 59 AQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 118
Query 61 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
GADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 119 GADGASGPVGQPGGDGGILWGNGGNGGDSTSP 150
>gi|148661913|ref|YP_001283436.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
gi|148506065|gb|ABQ73874.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=349
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/72 (99%), Positives = 72/72 (100%), Gaps = 0/72 (0%)
Query 21 LLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILW 80
+LNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILW
Sbjct 1 MLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILW 60
Query 81 GNGGNGGDSTSP 92
GNGGNGGDSTSP
Sbjct 61 GNGGNGGDSTSP 72
>gi|183981609|ref|YP_001849900.1| PE-PGRS family protein [Mycobacterium marinum M]
gi|183174935|gb|ACC40045.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=3634
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 45/68 (67%), Positives = 51/68 (75%), Gaps = 1/68 (1%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
G YQA+SAQ A+FHDRFV LN G SY AE N +QNLLNAVNAP QTLLGRPL+G+
Sbjct 59 GVEYQAISAQIASFHDRFVAALNTGTSSYVWAEATNVEQNLLNAVNAPVQTLLGRPLIGN 118
Query 61 GADGASGP 68
GA A+ P
Sbjct 119 GA-NATTP 125
>gi|339296212|gb|AEJ48323.1| hypothetical protein CCDC5079_3134 [Mycobacterium tuberculosis
CCDC5079]
Length=731
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/106 (63%), Positives = 77/106 (73%), Gaps = 4/106 (3%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q+YQA+SAQA FHD+FVQ L +GG YA+AE +Q +LNA+NAPTQTL GRPL+GD
Sbjct 59 AQAYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGD 118
Query 61 GADG-ASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGSAGLI 105
GA+G A P GQ GG GNGGNG T+ GVAGG GGSAGLI
Sbjct 119 GANGTAENPDGQNGGLLF---GNGGNGFTQTTAGVAGGNGGSAGLI 161
>gi|340627170|ref|YP_004745622.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
gi|340005360|emb|CCC44518.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=526
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q YQ +SAQ AA+H++FV+ LNAG GSYASAE AN QQ LLNA+NAPTQTLLGRPL+G+
Sbjct 59 AQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLIGN 118
Query 61 GAD 63
GAD
Sbjct 119 GAD 121
>gi|339632193|ref|YP_004723835.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
gi|339331549|emb|CCC27245.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=526
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q YQ +SAQ AA+H++FV+ LNAG GSYASAE AN QQ LLNA+NAPTQTLLGRPL+G+
Sbjct 59 AQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLIGN 118
Query 61 GAD 63
GAD
Sbjct 119 GAD 121
>gi|289447790|ref|ZP_06437534.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
gi|289420748|gb|EFD17949.1| PE-PGRS family protein [Mycobacterium tuberculosis CPHL_A]
Length=621
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 46/63 (74%), Positives = 54/63 (86%), Gaps = 0/63 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q YQ +SAQ AA+H++FV+ LNAG GSYASAE AN QQ LLNA+NAPTQTLLGRPL+G+
Sbjct 59 AQGYQTLSAQLAAYHNQFVRALNAGAGSYASAEAANVQQTLLNAINAPTQTLLGRPLIGN 118
Query 61 GAD 63
GAD
Sbjct 119 GAD 121
>gi|253797511|ref|YP_003030512.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
gi|253319014|gb|ACT23617.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
gi|328457295|gb|AEB02718.1| hypothetical protein TBSG_00589 [Mycobacterium tuberculosis KZN
4207]
gi|344218399|gb|AEM99029.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=1303
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/65 (65%), Positives = 49/65 (76%), Gaps = 0/65 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q YQ VSAQ A FHDRFVQ L+A SY +AE N +Q+LL AVNAPTQ L GRPL+G+
Sbjct 58 AQEYQTVSAQVATFHDRFVQTLSATASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGN 117
Query 61 GADGA 65
GADG+
Sbjct 118 GADGS 122
>gi|289552831|ref|ZP_06442041.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
KZN 605]
gi|289437463|gb|EFD19956.1| LOW QUALITY PROTEIN: predicted protein [Mycobacterium tuberculosis
KZN 605]
Length=998
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/65 (65%), Positives = 49/65 (76%), Gaps = 0/65 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q YQ VSAQ A FHDRFVQ L+A SY +AE N +Q+LL AVNAPTQ L GRPL+G+
Sbjct 58 AQEYQTVSAQVATFHDRFVQTLSATASSYVAAEAVNVEQSLLAAVNAPTQALFGRPLIGN 117
Query 61 GADGA 65
GADG+
Sbjct 118 GADGS 122
>gi|148824595|ref|YP_001289349.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
gi|148723122|gb|ABR07747.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
Length=731
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 73/102 (72%), Gaps = 4/102 (3%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q+YQA+SAQA FHD+FVQ L +GG YA+AE +Q +LNA+NAPTQTL GRPL+GD
Sbjct 59 AQAYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGD 118
Query 61 GADG-ASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGS 101
GA+G A P GQ GG GNGGNG T+ GVAGG GGS
Sbjct 119 GANGTAENPDGQNGGLLF---GNGGNGFTQTTAGVAGGNGGS 157
>gi|183982114|ref|YP_001850405.1| PE-PGRS family protein [Mycobacterium marinum M]
gi|183175440|gb|ACC40550.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=1397
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/63 (70%), Positives = 49/63 (78%), Gaps = 0/63 (0%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q YQA+SA+ AAFHDRFVQ LN G GSY AE ANA+Q LL VNAPTQ L GRPL+GD
Sbjct 59 AQQYQAISAELAAFHDRFVQSLNTGAGSYLRAEAANAEQGLLGLVNAPTQALFGRPLIGD 118
Query 61 GAD 63
GA+
Sbjct 119 GAN 121
>gi|148663252|ref|YP_001284775.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
gi|148507404|gb|ABQ75213.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=582
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 73/102 (72%), Gaps = 4/102 (3%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q+YQA+SAQA FHD+FVQ L +GG YA+AE +Q +LNA+NAPTQTL GRPL+GD
Sbjct 59 AQAYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGD 118
Query 61 GADG-ASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGS 101
GA+G A P GQ GG GNGGNG T+ GVAGG GGS
Sbjct 119 GANGTAENPDGQNGGLLF---GNGGNGFTQTTAGVAGGNGGS 157
>gi|57117101|ref|YP_177968.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
gi|253800434|ref|YP_003033435.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
gi|7441235|pir||C70974 hypothetical glycine-rich protein Rv3388 - Mycobacterium tuberculosis
(strain H37RV)
gi|38490366|emb|CAE55593.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|253321937|gb|ACT26540.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
gi|328460166|gb|AEB05589.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
gi|344221227|gb|AEN01858.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=731
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 73/102 (72%), Gaps = 4/102 (3%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q+YQA+SAQA FHD+FVQ L +GG YA+AE +Q +LNA+NAPTQTL GRPL+GD
Sbjct 59 AQAYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGD 118
Query 61 GADG-ASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGS 101
GA+G A P GQ GG GNGGNG T+ GVAGG GGS
Sbjct 119 GANGTAENPDGQNGGLLF---GNGGNGFTQTTAGVAGGNGGS 157
>gi|15842981|ref|NP_338018.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
gi|13883320|gb|AAK47832.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
Length=775
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 73/102 (72%), Gaps = 4/102 (3%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q+YQA+SAQA FHD+FVQ L +GG YA+AE +Q +LNA+NAPTQTL GRPL+GD
Sbjct 103 AQAYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGD 162
Query 61 GADG-ASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGS 101
GA+G A P GQ GG GNGGNG T+ GVAGG GGS
Sbjct 163 GANGTAENPDGQNGGLLF---GNGGNGFTQTTAGVAGGNGGS 201
>gi|339633393|ref|YP_004725035.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
gi|339332749|emb|CCC28470.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=724
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/102 (61%), Positives = 73/102 (72%), Gaps = 4/102 (3%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQQNLLNAVNAPTQTLLGRPLVGD 60
Q+YQA+SAQA FHD+FVQ L +GG YA+AE +Q +LNA+NAPTQTL GRPL+GD
Sbjct 59 AQAYQALSAQATIFHDQFVQALTSGGNLYAAAESHTVEQMVLNAINAPTQTLFGRPLIGD 118
Query 61 GADG-ASGPVGQPGGDGGILWGNGGNGGDSTSPGVAGGAGGS 101
GA+G A P GQ GG GNGGNG T+ GVAGG GGS
Sbjct 119 GANGTAENPDGQNGGLLF---GNGGNGFTQTTAGVAGGNGGS 157
>gi|254232261|ref|ZP_04925588.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
gi|124601320|gb|EAY60330.1| PE-PGRS family protein [Mycobacterium tuberculosis C]
Length=385
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)
Query 45 VNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
+NAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 1 MNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 48
>gi|297731668|ref|ZP_06960786.1| hypothetical protein MtubKR_11291 [Mycobacterium tuberculosis
KZN R506]
Length=321
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)
Query 45 VNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
+NAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 1 MNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 48
>gi|297634680|ref|ZP_06952460.1| hypothetical protein MtubK4_11186 [Mycobacterium tuberculosis
KZN 4207]
Length=318
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)
Query 45 VNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
+NAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 1 MNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 48
>gi|313659003|ref|ZP_07815883.1| hypothetical protein MtubKV_11306 [Mycobacterium tuberculosis
KZN V2475]
Length=309
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)
Query 45 VNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
+NAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 1 MNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 48
>gi|289762260|ref|ZP_06521638.1| PE-PGRS family protein [Mycobacterium tuberculosis GM 1503]
gi|289709766|gb|EFD73782.1| PE-PGRS family protein [Mycobacterium tuberculosis GM 1503]
Length=235
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)
Query 45 VNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
+NAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 1 MNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 48
>gi|148823312|ref|YP_001288066.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
gi|253798843|ref|YP_003031844.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
gi|254551131|ref|ZP_05141578.1| hypothetical protein Mtube_11816 [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
gi|339632133|ref|YP_004723775.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
gi|148721839|gb|ABR06464.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
gi|253320346|gb|ACT24949.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
gi|328458602|gb|AEB04025.1| hypothetical protein TBSG_01896 [Mycobacterium tuberculosis KZN
4207]
gi|339331489|emb|CCC27182.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=389
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/48 (98%), Positives = 48/48 (100%), Gaps = 0/48 (0%)
Query 45 VNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 92
+NAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP
Sbjct 1 MNAPTQTLLGRPLVGDGADGASGPVGQPGGDGGILWGNGGNGGDSTSP 48
>gi|340626466|ref|YP_004744918.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
gi|340004656|emb|CCC43800.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=1006
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 46/64 (72%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAE------IANAQQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRFVQ L+A GSY SAE +A + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFVQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|340626464|ref|YP_004744916.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
gi|340004654|emb|CCC43798.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=1408
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 46/64 (72%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAE------IANAQQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRFVQ L+A GSY SAE +A + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFVQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|340627846|ref|YP_004746298.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
gi|340006036|emb|CCC45206.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=615
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/68 (61%), Positives = 49/68 (73%), Gaps = 2/68 (2%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANAQ--QNLLNAVNAPTQTLLGRPLV 58
+SYQ +S QAAAFH RFVQ L SYAS E ANA Q L+ +NAP QTLLGRPL+
Sbjct 59 ARSYQTLSTQAAAFHSRFVQALTTAAASYASVEAANASPLQVALDVINAPAQTLLGRPLI 118
Query 59 GDGADGAS 66
G+GADG++
Sbjct 119 GNGADGST 126
>gi|339294426|gb|AEJ46537.1| putative PE family protein [Mycobacterium tuberculosis CCDC5079]
Length=1330
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 60 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 119
Query 55 RPLV 58
RPL+
Sbjct 120 RPLI 123
>gi|339298064|gb|AEJ50174.1| putative PE family protein [Mycobacterium tuberculosis CCDC5180]
Length=1330
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 60 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 119
Query 55 RPLV 58
RPL+
Sbjct 120 RPLI 123
>gi|183982606|ref|YP_001850897.1| PE-PGRS family protein [Mycobacterium marinum M]
gi|183175932|gb|ACC41042.1| PE-PGRS family protein [Mycobacterium marinum M]
Length=506
Score = 86.7 bits (213), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/73 (62%), Positives = 52/73 (72%), Gaps = 6/73 (8%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
G YQA+SAQ A FH +F Q L+A SYA AE ANA +Q LL A+NAPTQTLLG
Sbjct 59 GVQYQAISAQMAQFHRQFAQALSAANRSYALAEAANASPLQAIEQQLLAAINAPTQTLLG 118
Query 55 RPLVGDGADGASG 67
RPL+G+GADGA G
Sbjct 119 RPLIGNGADGAPG 131
>gi|57116865|ref|YP_177812.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
gi|7441217|pir||E70917 hypothetical glycine-rich protein Rv1450c - Mycobacterium tuberculosis
(strain H37RV)
gi|38490271|emb|CAE55390.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
Length=1329
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|339631822|ref|YP_004723464.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
gi|339331178|emb|CCC26860.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=632
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/67 (65%), Positives = 54/67 (81%), Gaps = 3/67 (4%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA---QQNLLNAVNAPTQTLLGRPL 57
++YQA+SAQAA FH++FV+ L AGG SYA AE A A QQ+LLN +NAPTQ LLGRPL
Sbjct 59 ARAYQALSAQAAMFHEQFVRALAAGGNSYAVAEAATAQSVQQDLLNLINAPTQALLGRPL 118
Query 58 VGDGADG 64
+G+GA+G
Sbjct 119 IGNGANG 125
>gi|253799501|ref|YP_003032502.1| hypothetical protein TBMG_02531 [Mycobacterium tuberculosis KZN
1435]
gi|253321004|gb|ACT25607.1| predicted protein [Mycobacterium tuberculosis KZN 1435]
gi|328459249|gb|AEB04672.1| hypothetical protein TBSG_02543 [Mycobacterium tuberculosis KZN
4207]
Length=1408
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 60 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 119
Query 55 RPLV 58
RPL+
Sbjct 120 RPLI 123
>gi|339631517|ref|YP_004723159.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
gi|339330873|emb|CCC26544.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=1389
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|121637380|ref|YP_977603.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224989855|ref|YP_002644542.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|121493027|emb|CAL71498.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224772968|dbj|BAH25774.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
gi|341601399|emb|CCC64072.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
Length=1399
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|339631519|ref|YP_004723161.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
gi|339330875|emb|CCC26546.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
Length=805
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|15840909|ref|NP_335946.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
gi|13881112|gb|AAK45760.1| PE_PGRS family protein [Mycobacterium tuberculosis CDC1551]
Length=1408
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 60 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 119
Query 55 RPLV 58
RPL+
Sbjct 120 RPLI 123
>gi|339294428|gb|AEJ46539.1| hypothetical protein CCDC5079_1349 [Mycobacterium tuberculosis
CCDC5079]
Length=742
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 60 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 119
Query 55 RPLV 58
RPL+
Sbjct 120 RPLI 123
>gi|339298066|gb|AEJ50176.1| hypothetical protein CCDC5180_1339 [Mycobacterium tuberculosis
CCDC5180]
Length=742
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 60 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 119
Query 55 RPLV 58
RPL+
Sbjct 120 RPLI 123
>gi|57116866|ref|YP_177813.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
gi|148661244|ref|YP_001282767.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
gi|7441232|pir||G70917 hypothetical glycine-rich protein Rv1452c - Mycobacterium tuberculosis
(strain H37RV)
gi|38490272|emb|CAE55391.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
gi|148505396|gb|ABQ73205.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=741
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|148661242|ref|YP_001282765.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
gi|148505394|gb|ABQ73203.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
Length=1398
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|148822669|ref|YP_001287423.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
gi|148721196|gb|ABR05821.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
gi|344219280|gb|AEM99910.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=1407
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|31792646|ref|NP_855139.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
gi|31618236|emb|CAD96154.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=795
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
>gi|31792644|ref|NP_855137.1| PE-PGRS family protein [Mycobacterium bovis AF2122/97]
gi|31618234|emb|CAD96152.1| PE-PGRS FAMILY PROTEIN [Mycobacterium bovis AF2122/97]
Length=1408
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/64 (60%), Positives = 45/64 (71%), Gaps = 6/64 (9%)
Query 1 GQSYQAVSAQAAAFHDRFVQLLNAGGGSYASAEIANA------QQNLLNAVNAPTQTLLG 54
+ YQA+S Q AAFHDRF Q L+A GSY SAE NA + N+LNA+NAPTQ LLG
Sbjct 59 AREYQAISTQVAAFHDRFAQTLSAAVGSYVSAEATNAAPLATLEHNVLNALNAPTQALLG 118
Query 55 RPLV 58
RPL+
Sbjct 119 RPLI 122
Lambda K H
0.308 0.145 0.457
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 885232741974
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40