BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2104c Length=84 Score E Sequences producing significant alignments: (Bits) Value gi|15609241|ref|NP_216620.1| hypothetical protein Rv2104c [Mycob... 166 1e-39 gi|289745379|ref|ZP_06504757.1| conserved hypothetical protein [... 165 3e-39 gi|333990438|ref|YP_004523052.1| hypothetical protein JDM601_179... 141 4e-32 gi|145221523|ref|YP_001132201.1| CopG/DNA-binding domain-contain... 127 5e-28 gi|467012|gb|AAA17197.1| B2126_C2_217 [Mycobacterium leprae] >gi... 65.5 3e-09 gi|116624724|ref|YP_826880.1| hypothetical protein Acid_5648 [Ca... 63.2 1e-08 gi|297623634|ref|YP_003705068.1| hypothetical protein Trad_1403 ... 53.9 8e-06 gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [d... 47.4 8e-04 gi|289447758|ref|ZP_06437502.1| CopG family DNA-binding protein ... 46.2 0.002 gi|15609269|ref|NP_216648.1| hypothetical protein Rv2132 [Mycoba... 45.8 0.002 gi|229822545|ref|YP_002884071.1| CopG family DNA-binding protein... 45.4 0.003 gi|15841623|ref|NP_336660.1| CopG family DNA-binding protein [My... 45.4 0.003 gi|336177809|ref|YP_004583184.1| CopG/DNA-binding domain-contain... 43.5 0.011 gi|308270135|emb|CBX26747.1| hypothetical protein N47_A07760 [un... 43.1 0.015 gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Sy... 42.4 0.026 gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 ... 42.0 0.034 gi|320105316|ref|YP_004180906.1| hypothetical protein AciPR4_007... 40.0 0.11 gi|298529362|ref|ZP_07016765.1| conserved hypothetical protein [... 40.0 0.13 gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycoba... 35.4 3.0 gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [... 35.4 3.1 gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycoba... 35.0 3.3 gi|322435686|ref|YP_004217898.1| hypothetical protein AciX9_2073... 34.3 7.2 gi|210617505|ref|ZP_03291608.1| hypothetical protein CLONEX_0383... 33.9 9.0 gi|331245804|ref|XP_003335537.1| hypothetical protein PGTG_16863... 33.5 9.8 >gi|15609241|ref|NP_216620.1| hypothetical protein Rv2104c [Mycobacterium tuberculosis H37Rv] gi|15841595|ref|NP_336632.1| hypothetical protein MT2164 [Mycobacterium tuberculosis CDC1551] gi|31793286|ref|NP_855779.1| hypothetical protein Mb2130c [Mycobacterium bovis AF2122/97] 73 more sequence titles Length=84 Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 84/84 (100%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN 60 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN Sbjct 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN 60 Query 61 LDRALQLAADLEDEELVRRQRRGS 84 LDRALQLAADLEDEELVRRQRRGS Sbjct 61 LDRALQLAADLEDEELVRRQRRGS 84 >gi|289745379|ref|ZP_06504757.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289685907|gb|EFD53395.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] Length=84 Score = 165 bits (417), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/84 (99%), Positives = 84/84 (100%), Gaps = 0/84 (0%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN 60 MRTTV+LDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN Sbjct 1 MRTTVSLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN 60 Query 61 LDRALQLAADLEDEELVRRQRRGS 84 LDRALQLAADLEDEELVRRQRRGS Sbjct 61 LDRALQLAADLEDEELVRRQRRGS 84 >gi|333990438|ref|YP_004523052.1| hypothetical protein JDM601_1798 [Mycobacterium sp. JDM601] gi|333486406|gb|AEF35798.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=83 Score = 141 bits (355), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 70/84 (84%), Positives = 79/84 (95%), Gaps = 1/84 (1%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN 60 MRTTVTLDDDVEQL+RRRMAERQ+SFK+ALN+AIRDG++GR P F TRTADLGVP+VN Sbjct 1 MRTTVTLDDDVEQLIRRRMAERQLSFKQALNEAIRDGSAGRATP-QFQTRTADLGVPSVN 59 Query 61 LDRALQLAADLEDEELVRRQRRGS 84 LDRALQLAADLEDEEL+RRQRRG+ Sbjct 60 LDRALQLAADLEDEELIRRQRRGA 83 >gi|145221523|ref|YP_001132201.1| CopG/DNA-binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145214009|gb|ABP43413.1| CopG domain protein DNA-binding domain protein [Mycobacterium gilvum PYR-GCK] Length=84 Score = 127 bits (320), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 62/84 (74%), Positives = 76/84 (91%), Gaps = 0/84 (0%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVN 60 MRTTVTLDDD L+RRRMAE+ +SFK+ALN+AIRDGA+ RPAP+ FSTR ADLGVP+V+ Sbjct 1 MRTTVTLDDDTVALIRRRMAEQGISFKEALNNAIRDGAAQRPAPAAFSTRVADLGVPSVS 60 Query 61 LDRALQLAADLEDEELVRRQRRGS 84 LDRALQLAA+LED+EL+RR R+G+ Sbjct 61 LDRALQLAAELEDDELIRRLRQGT 84 >gi|467012|gb|AAA17197.1| B2126_C2_217 [Mycobacterium leprae] gi|4200276|emb|CAA22935.1| hypothetical protein MLCB2533.21 [Mycobacterium leprae] Length=97 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 32/56 (58%), Positives = 37/56 (67%), Gaps = 0/56 (0%) Query 24 VSFKKALNDAIRDGASGRPAPSHFSTRTADLGVPAVNLDRALQLAADLEDEELVRR 79 +SFKK ND IRD GR P F+ DL + AVNLD AL +AA+ EDEELVRR Sbjct 1 MSFKKVFNDVIRDSVLGRFEPHRFTACITDLALSAVNLDWALPIAAEFEDEELVRR 56 >gi|116624724|ref|YP_826880.1| hypothetical protein Acid_5648 [Candidatus Solibacter usitatus Ellin6076] gi|116227886|gb|ABJ86595.1| conserved hypothetical protein [Candidatus Solibacter usitatus Ellin6076] Length=87 Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/82 (47%), Positives = 50/82 (61%), Gaps = 3/82 (3%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDG--ASGRPAPSHFSTRTADLGVPA 58 MRTTVTLD DVE+ ++ M R VSFK+ALNDAIR G G F +T LG Sbjct 1 MRTTVTLDPDVERALKATMRTRGVSFKQALNDAIRTGLLKPGSKTRRRFVQKTYSLGAEQ 60 Query 59 -VNLDRALQLAADLEDEELVRR 79 ++AL +A +EDEE++R+ Sbjct 61 NFRWEKALAIADAIEDEEIIRK 82 >gi|297623634|ref|YP_003705068.1| hypothetical protein Trad_1403 [Truepera radiovictrix DSM 17093] gi|297164814|gb|ADI14525.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093] Length=80 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 32/65 (50%), Positives = 39/65 (60%), Gaps = 3/65 (4%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAP---SHFSTRTADLGVP 57 MRTT+TLDDDVE+ +RR ER SFK +N A+R+G P F T+T LG Sbjct 1 MRTTLTLDDDVEKRLRRLQKERGESFKSLVNRALREGLVALEQPRATDAFRTQTVSLGRA 60 Query 58 AVNLD 62 VNLD Sbjct 61 LVNLD 65 >gi|94265939|ref|ZP_01289665.1| conserved hypothetical protein [delta proteobacterium MLMS-1] gi|93453525|gb|EAT03933.1| conserved hypothetical protein [delta proteobacterium MLMS-1] Length=94 Score = 47.4 bits (111), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 28/81 (35%), Positives = 45/81 (56%), Gaps = 4/81 (4%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--RPAPSHFSTRTADLGV-- 56 MRTT+T+DD + +R FK+ +N+A+R G + P + +++ LG Sbjct 7 MRTTLTIDDQLSVELREAANRSGKPFKQIVNEALRKGLNALEHPPGRPYRIKSSSLGKVR 66 Query 57 PAVNLDRALQLAADLEDEELV 77 P +NLD+AL LA LED ++ Sbjct 67 PGINLDKALGLADGLEDSAIM 87 >gi|289447758|ref|ZP_06437502.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CPHL_A] gi|289420716|gb|EFD17917.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CPHL_A] Length=59 Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 0/55 (0%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLG 55 MRTTV+L DDV V+R ER + +A+N+ IR G + R + F +T D+G Sbjct 1 MRTTVSLADDVAAAVQRLRKERSIGLSEAVNELIRAGLTKRQVANRFQQQTYDMG 55 >gi|15609269|ref|NP_216648.1| hypothetical protein Rv2132 [Mycobacterium tuberculosis H37Rv] gi|31793312|ref|NP_855805.1| hypothetical protein Mb2156 [Mycobacterium bovis AF2122/97] gi|121638014|ref|YP_978238.1| hypothetical protein BCG_2149 [Mycobacterium bovis BCG str. Pasteur 1173P2] 58 more sequence titles Length=76 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 0/55 (0%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLG 55 MRTTV+L DDV V+R ER + +A+N+ IR G + R + F +T D+G Sbjct 1 MRTTVSLADDVAAAVQRLRKERSIGLSEAVNELIRAGLTKRQVANRFQQQTYDMG 55 >gi|229822545|ref|YP_002884071.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333] gi|229568458|gb|ACQ82309.1| CopG family DNA-binding protein [Beutenbergia cavernae DSM 12333] Length=80 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 29/70 (42%), Positives = 38/70 (55%), Gaps = 3/70 (4%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGAS-GRPAPSHFSTRTADLG--VP 57 MRTT+ LDDDV R ER + +A+N+ R G G PA + RTADLG + Sbjct 1 MRTTIRLDDDVAAAAERLRRERHIGLGEAVNELARAGLHRGAPAERRYRQRTADLGLRID 60 Query 58 AVNLDRALQL 67 N+ AL+L Sbjct 61 VSNVAEALEL 70 >gi|15841623|ref|NP_336660.1| CopG family DNA-binding protein [Mycobacterium tuberculosis CDC1551] gi|308232042|ref|ZP_07663980.1| hypothetical protein TMAG_00318 [Mycobacterium tuberculosis SUMu001] gi|308372148|ref|ZP_07667308.1| hypothetical protein TMDG_00609 [Mycobacterium tuberculosis SUMu004] 11 more sequence titles Length=82 Score = 45.4 bits (106), Expect = 0.003, Method: Compositional matrix adjust. Identities = 23/55 (42%), Positives = 33/55 (60%), Gaps = 0/55 (0%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSHFSTRTADLG 55 MRTTV+L DDV V+R ER + +A+N+ IR G + R + F +T D+G Sbjct 7 MRTTVSLADDVAAAVQRLRKERSIGLSEAVNELIRAGLTKRQVANRFQQQTYDMG 61 >gi|336177809|ref|YP_004583184.1| CopG/DNA-binding domain-containing protein [Frankia symbiont of Datisca glomerata] gi|334858789|gb|AEH09263.1| CopG/DNA-binding domain-containing protein [Frankia symbiont of Datisca glomerata] Length=82 Score = 43.5 bits (101), Expect = 0.011, Method: Compositional matrix adjust. Identities = 26/76 (35%), Positives = 49/76 (65%), Gaps = 4/76 (5%) Query 5 VTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGR---PAPSHFSTRTADLGVPAVNL 61 +TLD DV +++ + E+ +SF++ALN +R G + R P R+ L + ++L Sbjct 1 MTLDPDVAAALQKEVREQGMSFEEALNTLVRAGLANRRQDTPPCRTPARSLGLRL-DIDL 59 Query 62 DRALQLAADLEDEELV 77 D+AL+L+++LED+E++ Sbjct 60 DKALRLSSELEDDEII 75 >gi|308270135|emb|CBX26747.1| hypothetical protein N47_A07760 [uncultured Desulfobacterium sp.] Length=81 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 27/79 (35%), Positives = 44/79 (56%), Gaps = 4/79 (5%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSH---FSTRTADLGVP 57 MRTT+T+D+DV + R A+ + FK +N+A+R G P+ + T+ +GV Sbjct 1 MRTTITIDNDVLERARAISAKLRTPFKTVINEALRTGLDHVQQPAKCRRYKTKPHAMGVK 60 Query 58 AV-NLDRALQLAADLEDEE 75 A N+D +L A +E E+ Sbjct 61 AGRNIDNIQELLAQIEGED 79 >gi|116748339|ref|YP_845026.1| hypothetical protein Sfum_0895 [Syntrophobacter fumaroxidans MPOB] gi|116697403|gb|ABK16591.1| conserved hypothetical protein [Syntrophobacter fumaroxidans MPOB] Length=88 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 27/77 (36%), Positives = 42/77 (55%), Gaps = 4/77 (5%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--RPAPSHFSTRTADLGV-- 56 MRTT+T+DD++ ++ SF++ +NDA+R GA P + LG+ Sbjct 1 MRTTLTIDDEIAVSLKDLAHRSGKSFRQVVNDALRKGAHALENPEARPYRLSPTSLGLLR 60 Query 57 PAVNLDRALQLAADLED 73 +NLD+AL LA + ED Sbjct 61 SNINLDKALNLADERED 77 >gi|88810688|ref|ZP_01125945.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231] gi|88792318|gb|EAR23428.1| hypothetical protein NB231_16448 [Nitrococcus mobilis Nb-231] Length=92 Score = 42.0 bits (97), Expect = 0.034, Method: Compositional matrix adjust. Identities = 30/82 (37%), Positives = 42/82 (52%), Gaps = 8/82 (9%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDG-----ASGRPAPSHFSTRTADLG 55 MRTTVTL+ DV ++ R+ SFK+ LND +R G +GR P F + G Sbjct 5 MRTTVTLEPDVAAKLKELAHRRRASFKETLNDVLRKGLTSQAKAGRSEP--FVVKPHSGG 62 Query 56 V-PAVNLDRALQLAADLEDEEL 76 P ++ D+ QL LE E+ Sbjct 63 FRPGIDPDKLNQLLDQLEVEDF 84 >gi|320105316|ref|YP_004180906.1| hypothetical protein AciPR4_0071 [Terriglobus saanensis SP1PR4] gi|319923837|gb|ADV80912.1| hypothetical protein AciPR4_0071 [Terriglobus saanensis SP1PR4] Length=80 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 25/66 (38%), Positives = 37/66 (57%), Gaps = 5/66 (7%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDG---ASGRPAPSHFSTRTADLG-V 56 MRTT+T+DDDV L++R M K+A+N +R S PAP F ++ LG + Sbjct 1 MRTTLTIDDDVAALLKREMRRSGEPMKQAINRCLRTALAVKSTEPAP-KFKVQSRKLGLL 59 Query 57 PAVNLD 62 P ++ D Sbjct 60 PGMSYD 65 >gi|298529362|ref|ZP_07016765.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510798|gb|EFI34701.1| conserved hypothetical protein [Desulfonatronospira thiodismutans ASO3-1] Length=81 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 26/79 (33%), Positives = 43/79 (55%), Gaps = 4/79 (5%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPS---HFSTRTADLGVP 57 MRTT+ +D+DV + R A R++ FK +N+A+R G P+ ++T +G+ Sbjct 1 MRTTLAIDNDVLEKARALAARRKIPFKTVINEALRAGLREVEKPALQQDYTTMPQPMGLK 60 Query 58 -AVNLDRALQLAADLEDEE 75 NLD +L A +E E+ Sbjct 61 QGRNLDNIQELLAQVEGED 79 >gi|15840686|ref|NP_335723.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551] gi|13880873|gb|AAK45537.1| hypothetical protein MT1279 [Mycobacterium tuberculosis CDC1551] Length=98 Score = 35.4 bits (80), Expect = 3.0, Method: Compositional matrix adjust. Identities = 31/91 (35%), Positives = 45/91 (50%), Gaps = 14/91 (15%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--------RPAPSHFSTRTA 52 MRTT+TLDDDV +LV + + K+ +NDA+R + R P + R+ Sbjct 13 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 72 Query 53 DLGVPAVNLDRALQLAADLEDEELVRRQRRG 83 L + N +LA +LEDE L+ RR Sbjct 73 -LDLAGFN-----KLADELEDEALLDATRRA 97 >gi|254364141|ref|ZP_04980187.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|289554970|ref|ZP_06444180.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289744986|ref|ZP_06504364.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|134149655|gb|EBA41700.1| conserved hypothetical protein [Mycobacterium tuberculosis str. Haarlem] gi|289439602|gb|EFD22095.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 605] gi|289685514|gb|EFD53002.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|328459460|gb|AEB04883.1| conserved hypothetical protein [Mycobacterium tuberculosis KZN 4207] Length=90 Score = 35.4 bits (80), Expect = 3.1, Method: Compositional matrix adjust. Identities = 31/91 (35%), Positives = 45/91 (50%), Gaps = 14/91 (15%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--------RPAPSHFSTRTA 52 MRTT+TLDDDV +LV + + K+ +NDA+R + R P + R+ Sbjct 5 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 64 Query 53 DLGVPAVNLDRALQLAADLEDEELVRRQRRG 83 L + N +LA +LEDE L+ RR Sbjct 65 -LDLAGFN-----KLADELEDEALLDATRRA 89 >gi|15608381|ref|NP_215757.1| hypothetical protein Rv1241 [Mycobacterium tuberculosis H37Rv] gi|31792434|ref|NP_854927.1| hypothetical protein Mb1273 [Mycobacterium bovis AF2122/97] gi|121637170|ref|YP_977393.1| hypothetical protein BCG_1301 [Mycobacterium bovis BCG str. Pasteur 1173P2] 68 more sequence titles Length=86 Score = 35.0 bits (79), Expect = 3.3, Method: Compositional matrix adjust. Identities = 31/91 (35%), Positives = 45/91 (50%), Gaps = 14/91 (15%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASG--------RPAPSHFSTRTA 52 MRTT+TLDDDV +LV + + K+ +NDA+R + R P + R+ Sbjct 1 MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSG 60 Query 53 DLGVPAVNLDRALQLAADLEDEELVRRQRRG 83 L + N +LA +LEDE L+ RR Sbjct 61 -LDLAGFN-----KLADELEDEALLDATRRA 85 >gi|322435686|ref|YP_004217898.1| hypothetical protein AciX9_2073 [Acidobacterium sp. MP5ACTX9] gi|321163413|gb|ADW69118.1| hypothetical protein AciX9_2073 [Acidobacterium sp. MP5ACTX9] Length=81 Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust. Identities = 22/76 (29%), Positives = 36/76 (48%), Gaps = 3/76 (3%) Query 1 MRTTVTLDDDVEQLVRRRMAERQVSFKKALNDAIRDGASGRPAPSH---FSTRTADLGVP 57 MRTT+T+DDDV L+++ + K+A+N +R G P F R D +P Sbjct 1 MRTTLTIDDDVAALLQKELRRSGEPLKQAVNRLLRAGLYQAATPMKSKPFKVRPFDASLP 60 Query 58 AVNLDRALQLAADLED 73 ++Q D+ + Sbjct 61 TEWTSGSIQQLLDIAE 76 >gi|210617505|ref|ZP_03291608.1| hypothetical protein CLONEX_03830 [Clostridium nexile DSM 1787] gi|210149292|gb|EEA80301.1| hypothetical protein CLONEX_03830 [Clostridium nexile DSM 1787] Length=430 Score = 33.9 bits (76), Expect = 9.0, Method: Composition-based stats. Identities = 20/73 (28%), Positives = 35/73 (48%), Gaps = 2/73 (2%) Query 8 DDDVEQLVRRRMAERQVSFKKALN--DAIRDGASGRPAPSHFSTRTADLGVPAVNLDRAL 65 D + +V++ + Q+ ++K +N D G G A + RT DLGVP + + + Sbjct 350 DSEAVGIVQQICEKEQIPYQKFVNRSDVTGGGTLGSIASAMLPVRTVDLGVPLLAMHSSR 409 Query 66 QLAADLEDEELVR 78 +L + E L R Sbjct 410 ELMGAKDQESLTR 422 >gi|331245804|ref|XP_003335537.1| hypothetical protein PGTG_16863 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309314527|gb|EFP91118.1| hypothetical protein PGTG_16863 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length=544 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 18/51 (36%), Positives = 24/51 (48%), Gaps = 0/51 (0%) Query 31 NDAIRDGASGRPAPSHFSTRTADLGVPAVNLDRALQLAADLEDEELVRRQR 81 N A + P P+ F+ T G P N D L LA L++EE R +R Sbjct 443 NSAPNQTSHSNPTPNQFNQSTHSTGPPRSNTDTDLNLAHQLQEEEYERVRR 493 Lambda K H 0.318 0.131 0.355 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131923386480 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40