BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2108

Length=243
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841599|ref|NP_336636.1|  PPE family protein [Mycobacterium t...   504    3e-141
gi|289750701|ref|ZP_06510079.1|  PPE family protein [Mycobacteriu...   503    1e-140
gi|188523821|gb|ACD61709.1|  P27 [Mycobacterium bovis]                 502    2e-140
gi|340627118|ref|YP_004745570.1|  PPE family protein [Mycobacteri...   485    2e-135
gi|148823319|ref|YP_001288073.1|  PPE family protein [Mycobacteri...   418    3e-115
gi|221230076|ref|YP_002503492.1|  PPE-family protein [Mycobacteri...   173    2e-41 
gi|15827599|ref|NP_301862.1|  PPE-family protein [Mycobacterium l...   173    2e-41 
gi|699113|gb|AAA62879.1|  u1756z [Mycobacterium leprae]                165    5e-39 
gi|183981478|ref|YP_001849769.1|  PPE family protein [Mycobacteri...   139    5e-31 
gi|240169037|ref|ZP_04747696.1|  PPE family protein [Mycobacteriu...   137    2e-30 
gi|296167733|ref|ZP_06849950.1|  PPE family protein [Mycobacteriu...   131    9e-29 
gi|240168615|ref|ZP_04747274.1|  PPE family protein [Mycobacteriu...   127    2e-27 
gi|240171968|ref|ZP_04750627.1|  PPE family protein [Mycobacteriu...   124    1e-26 
gi|183981477|ref|YP_001849768.1|  PPE family protein [Mycobacteri...   124    1e-26 
gi|333989927|ref|YP_004522541.1|  PPE family protein PPE51_2 [Myc...   123    2e-26 
gi|15841271|ref|NP_336308.1|  PPE family protein [Mycobacterium t...   122    3e-26 
gi|339294738|gb|AEJ46849.1|  PPE family protein [Mycobacterium tu...   122    4e-26 
gi|289750372|ref|ZP_06509750.1|  PPE family protein [Mycobacteriu...   122    4e-26 
gi|118617327|ref|YP_905659.1|  PPE family protein [Mycobacterium ...   122    4e-26 
gi|289761951|ref|ZP_06521329.1|  PPE family protein [Mycobacteriu...   122    5e-26 
gi|289757904|ref|ZP_06517282.1|  PPE family protein [Mycobacteriu...   122    5e-26 
gi|254550809|ref|ZP_05141256.1|  PPE family protein [Mycobacteriu...   122    5e-26 
gi|289745767|ref|ZP_06505145.1|  PPE family protein [Mycobacteriu...   122    6e-26 
gi|289574478|ref|ZP_06454705.1|  PPE family protein [Mycobacteriu...   121    8e-26 
gi|339631855|ref|YP_004723497.1|  PPE family protein [Mycobacteri...   121    8e-26 
gi|289574372|ref|ZP_06454599.1|  PPE family protein [Mycobacteriu...   121    1e-25 
gi|289745858|ref|ZP_06505236.1|  PPE family protein [Mycobacteriu...   120    1e-25 
gi|307079711|ref|ZP_07488881.1|  PPE family protein [Mycobacteriu...   120    2e-25 
gi|340626711|ref|YP_004745163.1|  PPE family protein [Mycobacteri...   120    2e-25 
gi|31792891|ref|NP_855384.1|  PPE family protein [Mycobacterium b...   120    2e-25 
gi|254550715|ref|ZP_05141162.1|  PPE family protein [Mycobacteriu...   120    2e-25 
gi|57116898|ref|YP_177827.1|  PPE family protein [Mycobacterium t...   120    2e-25 
gi|340626811|ref|YP_004745263.1|  PPE family protein [Mycobacteri...   120    2e-25 
gi|15841163|ref|NP_336200.1|  PPE family protein [Mycobacterium t...   120    2e-25 
gi|289447416|ref|ZP_06437160.1|  PPE family protein [Mycobacteriu...   120    2e-25 
gi|240173124|ref|ZP_04751782.1|  PPE family protein [Mycobacteriu...   120    2e-25 
gi|121637612|ref|YP_977835.1|  PPE family protein [Mycobacterium ...   119    3e-25 
gi|167969175|ref|ZP_02551452.1|  PPE family protein [Mycobacteriu...   119    3e-25 
gi|342861296|ref|ZP_08717944.1|  PPE family protein [Mycobacteriu...   119    5e-25 
gi|289757814|ref|ZP_06517192.1|  predicted protein [Mycobacterium...   118    7e-25 
gi|183980708|ref|YP_001848999.1|  PPE family protein [Mycobacteri...   117    1e-24 
gi|306782177|ref|ZP_07420514.1|  PPE family protein [Mycobacteriu...   117    1e-24 
gi|167970194|ref|ZP_02552471.1|  PPE family protein [Mycobacteriu...   117    1e-24 
gi|15842710|ref|NP_337747.1|  PPE family protein [Mycobacterium t...   117    1e-24 
gi|240171262|ref|ZP_04749921.1|  PPE family protein [Mycobacteriu...   117    1e-24 
gi|289761860|ref|ZP_06521238.1|  PPE family protein [Mycobacteriu...   117    2e-24 
gi|240169713|ref|ZP_04748372.1|  PPE family protein [Mycobacteriu...   117    2e-24 
gi|240169716|ref|ZP_04748375.1|  PPE family protein [Mycobacteriu...   117    2e-24 
gi|240172861|ref|ZP_04751520.1|  PPE family protein, PPE31 [Mycob...   117    2e-24 
gi|183981528|ref|YP_001849819.1|  PPE family protein, PPE51 [Myco...   116    3e-24 


>gi|15841599|ref|NP_336636.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31793288|ref|NP_855781.1| PPE family protein [Mycobacterium bovis AF2122/97]
 gi|57116946|ref|YP_177859.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 74 more sequence titles
 Length=243

 Score =  504 bits (1299),  Expect = 3e-141, Method: Compositional matrix adjust.
 Identities = 243/243 (100%), Positives = 243/243 (100%), Gaps = 0/243 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ
Sbjct  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL
Sbjct  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE  180
            KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE
Sbjct  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE  180

Query  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240
            AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH
Sbjct  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240

Query  241  PKF  243
            PKF
Sbjct  241  PKF  243


>gi|289750701|ref|ZP_06510079.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289691288|gb|EFD58717.1| PPE family protein [Mycobacterium tuberculosis T92]
Length=243

 Score =  503 bits (1294),  Expect = 1e-140, Method: Compositional matrix adjust.
 Identities = 242/243 (99%), Positives = 242/243 (99%), Gaps = 0/243 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ
Sbjct  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL
Sbjct  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE  180
            KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYD 
Sbjct  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDA  180

Query  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240
            AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH
Sbjct  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240

Query  241  PKF  243
            PKF
Sbjct  241  PKF  243


>gi|188523821|gb|ACD61709.1| P27 [Mycobacterium bovis]
Length=243

 Score =  502 bits (1293),  Expect = 2e-140, Method: Compositional matrix adjust.
 Identities = 242/243 (99%), Positives = 242/243 (99%), Gaps = 0/243 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ
Sbjct  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            SSQALIQQTLPYVQWLTTTAEHAHK AIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL
Sbjct  61   SSQALIQQTLPYVQWLTTTAEHAHKIAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE  180
            KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE
Sbjct  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE  180

Query  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240
            AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH
Sbjct  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240

Query  241  PKF  243
            PKF
Sbjct  241  PKF  243


>gi|340627118|ref|YP_004745570.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005308|emb|CCC44464.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
Length=243

 Score =  485 bits (1249),  Expect = 2e-135, Method: Compositional matrix adjust.
 Identities = 232/243 (96%), Positives = 236/243 (98%), Gaps = 0/243 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ
Sbjct  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            SSQALIQQTLPYVQWLTTTAEHAH+TA QLTAAANAYEQARAAMVPPAMVRANRVQT  L
Sbjct  61   SSQALIQQTLPYVQWLTTTAEHAHRTATQLTAAANAYEQARAAMVPPAMVRANRVQTIAL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDE  180
            KA NWFGQFSTRIA+KEADYEQMWFQDALVME YWEAVQEAIQSTS FEDPP+MADDYDE
Sbjct  121  KAFNWFGQFSTRIAEKEADYEQMWFQDALVMETYWEAVQEAIQSTSQFEDPPKMADDYDE  180

Query  181  AWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDKEGTIRLVYDGEPTFSYKEH  240
            AWMLNTVFDYHNENAKEE IHLVPDVNKERGPIELVTK+DKEGTIRLVYDGEPTFSYKEH
Sbjct  181  AWMLNTVFDYHNENAKEETIHLVPDVNKERGPIELVTKLDKEGTIRLVYDGEPTFSYKEH  240

Query  241  PKF  243
            PKF
Sbjct  241  PKF  243


>gi|148823319|ref|YP_001288073.1| PPE family protein [Mycobacterium tuberculosis F11]
 gi|148721846|gb|ABR06471.1| PPE family protein [Mycobacterium tuberculosis F11]
Length=213

 Score =  418 bits (1075),  Expect = 3e-115, Method: Compositional matrix adjust.
 Identities = 201/202 (99%), Positives = 202/202 (100%), Gaps = 0/202 (0%)

Query  42   TKVGLQSALDTLLESYRGQSSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQAR  101
            +KVGLQSALDTLLESYRGQSSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQAR
Sbjct  12   SKVGLQSALDTLLESYRGQSSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQAR  71

Query  102  AAMVPPAMVRANRVQTTVLKAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEA  161
            AAMVPPAMVRANRVQTTVLKAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEA
Sbjct  72   AAMVPPAMVRANRVQTTVLKAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEA  131

Query  162  IQSTSHFEDPPEMADDYDEAWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDK  221
            IQSTSHFEDPPEMADDYDEAWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDK
Sbjct  132  IQSTSHFEDPPEMADDYDEAWMLNTVFDYHNENAKEEVIHLVPDVNKERGPIELVTKVDK  191

Query  222  EGTIRLVYDGEPTFSYKEHPKF  243
            EGTIRLVYDGEPTFSYKEHPKF
Sbjct  192  EGTIRLVYDGEPTFSYKEHPKF  213


>gi|221230076|ref|YP_002503492.1| PPE-family protein [Mycobacterium leprae Br4923]
 gi|219933183|emb|CAR71277.1| PPE-family protein [Mycobacterium leprae Br4923]
Length=417

 Score =  173 bits (438),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 91/172 (53%), Positives = 110/172 (64%), Gaps = 0/172 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            M +F AL PE NSTR+YLGPGS PIL AA  W  LA EL     GLQSA++ LL ++ G+
Sbjct  1    MFDFAALSPETNSTRMYLGPGSSPILTAAAAWVVLAKELTAAAQGLQSAVEALLTTFEGE  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            S+ AL ++  PY +WLT  A  A  TA QLT AANAYE A    VPP MV  NR Q  +L
Sbjct  61   SAAALAERVTPYEKWLTQNAASAELTATQLTVAANAYETAFTMTVPPLMVFVNRAQACLL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPP  172
               N FGQ ST IA+KEA+Y +MW QDA  M +Y  +V EA+ +T  F  PP
Sbjct  121  IMSNIFGQNSTAIAEKEAEYTEMWIQDAAAMTSYQASVLEAVGATKAFTAPP  172


>gi|15827599|ref|NP_301862.1| PPE-family protein [Mycobacterium leprae TN]
 gi|4493788|emb|CAB39148.1| putative PPE protein [Mycobacterium leprae]
 gi|13093150|emb|CAC31563.1| PPE-family protein [Mycobacterium leprae]
Length=421

 Score =  173 bits (438),  Expect = 2e-41, Method: Compositional matrix adjust.
 Identities = 91/172 (53%), Positives = 110/172 (64%), Gaps = 0/172 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            M +F AL PE NSTR+YLGPGS PIL AA  W  LA EL     GLQSA++ LL ++ G+
Sbjct  1    MFDFAALSPETNSTRMYLGPGSSPILTAAAAWVVLAKELTAAAQGLQSAVEALLTTFEGE  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            S+ AL ++  PY +WLT  A  A  TA QLT AANAYE A    VPP MV  NR Q  +L
Sbjct  61   SAAALAERVTPYEKWLTQNAASAELTATQLTVAANAYETAFTMTVPPLMVFVNRAQACLL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPP  172
               N FGQ ST IA+KEA+Y +MW QDA  M +Y  +V EA+ +T  F  PP
Sbjct  121  IMSNIFGQNSTAIAEKEAEYTEMWIQDAAAMTSYQASVLEAVGATKAFTAPP  172


>gi|699113|gb|AAA62879.1| u1756z [Mycobacterium leprae]
Length=204

 Score =  165 bits (418),  Expect = 5e-39, Method: Compositional matrix adjust.
 Identities = 88/165 (54%), Positives = 107/165 (65%), Gaps = 0/165 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQ  60
            M +F AL PE NSTR+YLGPGS PIL AA  W  LA EL     GLQSA++ LL ++ G+
Sbjct  1    MFDFAALSPETNSTRMYLGPGSSPILTAAAAWVVLAKELTAAAQGLQSAVEALLTTFEGE  60

Query  61   SSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVL  120
            S+ AL ++  PY +WLT  A  A  TA QLT AANAYE A    VPP MV  NR Q  +L
Sbjct  61   SAAALAERVTPYEKWLTQNAASAELTATQLTVAANAYETAFTMTVPPLMVFVNRAQACLL  120

Query  121  KAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQST  165
               N FGQ ST IA+KEA+Y +MW QDA  M +Y  +V EA+ +T
Sbjct  121  IMSNIFGQNSTAIAEKEAEYTEMWIQDATAMTSYQASVLEAVGAT  165


>gi|183981478|ref|YP_001849769.1| PPE family protein [Mycobacterium marinum M]
 gi|183174804|gb|ACC39914.1| PPE family protein [Mycobacterium marinum M]
Length=427

 Score =  139 bits (349),  Expect = 5e-31, Method: Compositional matrix adjust.
 Identities = 82/173 (48%), Positives = 103/173 (60%), Gaps = 2/173 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLE-SYRGQS  61
            +F ALPPEINS R+Y+GPGSGP+LAAA  W+ LA+EL  T  G +S LD L   S+RG +
Sbjct  2    DFGALPPEINSGRMYVGPGSGPMLAAAVVWDELAAELYATAAGYRSTLDGLTGGSWRGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S ++     PYV W+T TA  A     Q   AA+AYE A AA VPP ++ ANR     L 
Sbjct  62   SASMAAAAAPYVAWMTATAAQAELAGSQAKVAASAYETAFAATVPPPVIAANRALLMGLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEM  174
              N FGQ +  IA  EA Y +MW QDA  M  Y  +   A Q T  F +PP++
Sbjct  122  FTNIFGQNTPAIAATEAHYAEMWAQDAAAMYAYAGSSATATQVT-PFTEPPQI  173


>gi|240169037|ref|ZP_04747696.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=391

 Score =  137 bits (344),  Expect = 2e-30, Method: Compositional matrix adjust.
 Identities = 84/203 (42%), Positives = 115/203 (57%), Gaps = 1/203 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSAL-DTLLESYRGQS  61
            +F ALPPEINS R+Y GPGSG +LAAAQ W+ +A +L      +QS +   L+  +RG S
Sbjct  2    DFGALPPEINSARMYTGPGSGSLLAAAQVWDGVAIDLYNAASAVQSVIWGLLVGPWRGTS  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            +  ++    PYV WL TTA  A  TA Q+  AA AYE A A  VPPA++  NR+Q   L 
Sbjct  62   AGLMVAAASPYVTWLGTTAAQAELTADQVRTAATAYEAAFATTVPPAVIAGNRIQLLTLI  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
            A N FGQ +  IA  EADY +MW QDA  M  Y  +   A ++ + F++ PE+ +     
Sbjct  122  ASNLFGQNTPAIAVTEADYGEMWAQDAAAMYGYAGSAAVAAETLTPFDESPEITNAGGLV  181

Query  182  WMLNTVFDYHNENAKEEVIHLVP  204
                 V +  +  A  ++I  VP
Sbjct  182  QQAGAVEEATDTAAANQLISTVP  204


>gi|296167733|ref|ZP_06849950.1| PPE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295897076|gb|EFG76691.1| PPE family protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=406

 Score =  131 bits (329),  Expect = 9e-29, Method: Compositional matrix adjust.
 Identities = 81/200 (41%), Positives = 105/200 (53%), Gaps = 2/200 (1%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLL-ESYRG  59
            M +F A PPE NS R+Y GPG   + AAA  WN LA+EL  T +G    +  L  E + G
Sbjct  1    MIDFGAAPPEYNSARMYTGPGPEALTAAASAWNGLAAELNSTALGYDKVITALSGEEWLG  60

Query  60   QSSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTV  119
             +S ++ Q   PYV W+ TTA  A +TA Q+ AAA AYE A AA VPP +V ANR QT  
Sbjct  61   PASASMAQAVAPYVAWMRTTAAQAEQTANQMHAAATAYETALAATVPPPLVAANRAQTAQ  120

Query  120  LKAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYD  179
            L A N  G  +  IA  EA Y +MW QDA  M +Y      A    + F   P++A+   
Sbjct  121  LLATNVLGLNTPAIAQLEAQYGEMWAQDASTMYSY-AGQSAAATKVAPFTAAPQIANPSA  179

Query  180  EAWMLNTVFDYHNENAKEEV  199
            +A     V +    +A    
Sbjct  180  QATQGTAVANATGNSAASST  199


>gi|240168615|ref|ZP_04747274.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=379

 Score =  127 bits (318),  Expect = 2e-27, Method: Compositional matrix adjust.
 Identities = 82/174 (48%), Positives = 108/174 (63%), Gaps = 3/174 (1%)

Query  7    LPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYR-GQSSQAL  65
            LPPEINS RIY GPG G +LAAA+GW+A+A+EL    VG +S + +L   Y  G +S ++
Sbjct  6    LPPEINSARIYSGPGPGSLLAAARGWDAVATELTSAAVGYRSVISSLTAMYWWGPASVSM  65

Query  66   IQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKAINW  125
            +    P+V+WL TTA  A ++A Q  AAA A+EQA A  VPPA+V ANR Q   L A N+
Sbjct  66   LATAGPFVEWLETTAAQAKESADQSRAAAAAFEQAHAMTVPPAVVAANRTQLKALIASNF  125

Query  126  FGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYD  179
            FGQ +  IA  EA Y +MW QDA  M  Y  +   A  + + F   PE++ D D
Sbjct  126  FGQNTAAIAATEAQYAEMWAQDAAAMYGY-ASNSAAATALTPFSS-PELSVDPD  177


>gi|240171968|ref|ZP_04750627.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=414

 Score =  124 bits (312),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 78/176 (45%), Positives = 99/176 (57%), Gaps = 2/176 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLES-YRGQS  61
            +F A+PPEINS RIY GPGSGP++AAA  W+AL +EL     G  S +  L  S + G +
Sbjct  25   DFGAIPPEINSARIYSGPGSGPLIAAATAWDALTAELTAASAGYVSVISELTSSQWLGPA  84

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S A++   +P+  W++ TA  A  T IQ  AAA A+E A A  VPP +V ANR     L 
Sbjct  85   SMAMVATIVPHQVWISATARSAELTGIQARAAAAAFETAHAMTVPPPVVAANRSLLLTLI  144

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADD  177
            A N+FGQ +  IA  E  Y +MW QDA  M  Y  +   A   T  F  PP  AD 
Sbjct  145  ATNFFGQNTPAIASTEFHYAEMWAQDAAAMYGYAASCASASMLTP-FTAPPRTADS  199


>gi|183981477|ref|YP_001849768.1| PPE family protein [Mycobacterium marinum M]
 gi|183174803|gb|ACC39913.1| PPE family protein [Mycobacterium marinum M]
Length=469

 Score =  124 bits (311),  Expect = 1e-26, Method: Compositional matrix adjust.
 Identities = 82/174 (48%), Positives = 104/174 (60%), Gaps = 2/174 (1%)

Query  4    FWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLE-SYRGQSS  62
            + A PPEINS R+Y GPGSGP+LAAA  WN LA+EL+ T     S +  L+  S+ G S+
Sbjct  3    YAAFPPEINSGRMYTGPGSGPMLAAAVAWNGLAAELQSTAASYSSVISGLISGSWVGPSA  62

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             A+     PYV W+ +TA  A + A Q TAAA AYE A AA VPP ++  NR Q   L A
Sbjct  63   LAMAAAAGPYVTWVNSTAAQATQAADQATAAAGAYEIAFAAHVPPPVIATNRSQLAALVA  122

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMAD  176
             N  GQ +  IA  EA Y +MW QDA+ M+ Y  A   A Q T  F +PP++ D
Sbjct  123  SNLVGQNTAAIAATEAQYAEMWVQDAIAMDTYASASAAASQVTP-FSEPPQIVD  175


>gi|333989927|ref|YP_004522541.1| PPE family protein PPE51_2 [Mycobacterium sp. JDM601]
 gi|333485895|gb|AEF35287.1| PPE family protein PPE51_2 [Mycobacterium sp. JDM601]
Length=373

 Score =  123 bits (309),  Expect = 2e-26, Method: Compositional matrix adjust.
 Identities = 88/230 (39%), Positives = 120/230 (53%), Gaps = 10/230 (4%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLL-ESYRG  59
            M +F  LPPE+ ST++Y GPGSGP+LA+A  W+AL+ +L    +G  + L  L  E + G
Sbjct  1    MLDFGILPPEVISTQMYTGPGSGPLLASAAAWDALSGQLNAFALGYSTTLTGLQDEGWTG  60

Query  60   QSSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTV  119
             SSQA++    PY+ W++ TA  A   A Q  AAA AYE ARAA VPPA+V  NR Q   
Sbjct  61   ASSQAMLAAAAPYIAWVSQTATQAEHAATQSRAAAAAYESARAATVPPAVVTTNRTQLAN  120

Query  120  LKAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYD  179
            L A N FGQ +  I+  EA Y QMW QDA  M  Y      A Q  + F++PP+  +   
Sbjct  121  LVATNIFGQNTALISALEAAYAQMWAQDAAAMHGYATTAYTATQ-LAPFQEPPQTTNSAA  179

Query  180  EAWMLNTVFDY--------HNENAKEEVIHLVPDVNKERGPIELVTKVDK  221
             A                  +++A + VI      N   GP+   T + +
Sbjct  180  AASQALAPAAALGTAAASQGSQSAADGVIDGASTFNTLSGPVGFATAMSR  229


>gi|15841271|ref|NP_336308.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31792989|ref|NP_855482.1| PPE family protein [Mycobacterium bovis AF2122/97]
 gi|57116916|ref|YP_177840.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 57 more sequence titles
 Length=423

 Score =  122 bits (307),  Expect = 3e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|339294738|gb|AEJ46849.1| PPE family protein [Mycobacterium tuberculosis CCDC5079]
Length=423

 Score =  122 bits (307),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|289750372|ref|ZP_06509750.1| PPE family protein [Mycobacterium tuberculosis T92]
 gi|289690959|gb|EFD58388.1| PPE family protein [Mycobacterium tuberculosis T92]
Length=333

 Score =  122 bits (307),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|118617327|ref|YP_905659.1| PPE family protein [Mycobacterium ulcerans Agy99]
 gi|118569437|gb|ABL04188.1| PPE family protein [Mycobacterium ulcerans Agy99]
Length=392

 Score =  122 bits (306),  Expect = 4e-26, Method: Compositional matrix adjust.
 Identities = 75/180 (42%), Positives = 105/180 (59%), Gaps = 2/180 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLL-ESYRGQS  61
            +F ALPPE+NS R+Y GPGS P+++AA  WN LASEL  T  G +  +  L  E + G +
Sbjct  2    DFGALPPEVNSGRMYTGPGSTPMVSAASAWNRLASELSFTADGYERVIKALSGEEWFGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+ +TA  A + A Q  AA  A+E A   +VPP ++ +NR+Q   L 
Sbjct  62   SAMMLEAITPYVTWMRSTAVQAERAAKQAEAAVAAFEAAFTGVVPPPLIASNRMQLMTLM  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
            A N +GQ++  IA  EA Y +MW QDA  M  Y  +   A + T+ F  PPE A+    A
Sbjct  122  ARNIYGQYTAEIASLEAQYAEMWAQDARAMYTYAGSSASATKITA-FTPPPETANPAASA  180


>gi|289761951|ref|ZP_06521329.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289709457|gb|EFD73473.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
Length=423

 Score =  122 bits (306),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|289757904|ref|ZP_06517282.1| PPE family protein [Mycobacterium tuberculosis T85]
 gi|289713468|gb|EFD77480.1| PPE family protein [Mycobacterium tuberculosis T85]
Length=305

 Score =  122 bits (306),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|254550809|ref|ZP_05141256.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=284

 Score =  122 bits (306),  Expect = 5e-26, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|289745767|ref|ZP_06505145.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289686295|gb|EFD53783.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
Length=418

 Score =  122 bits (305),  Expect = 6e-26, Method: Compositional matrix adjust.
 Identities = 78/174 (45%), Positives = 98/174 (57%), Gaps = 1/174 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMAD  176
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+  +
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQTTN  174


>gi|289574478|ref|ZP_06454705.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|289538909|gb|EFD43487.1| PPE family protein [Mycobacterium tuberculosis K85]
Length=423

 Score =  121 bits (304),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 77/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QD+  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDSAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|339631855|ref|YP_004723497.1| PPE family protein [Mycobacterium africanum GM041182]
 gi|339331211|emb|CCC26893.1| PPE family protein [Mycobacterium africanum GM041182]
Length=423

 Score =  121 bits (304),  Expect = 8e-26, Method: Compositional matrix adjust.
 Identities = 77/171 (46%), Positives = 97/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QD+  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDSAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|289574372|ref|ZP_06454599.1| PPE family protein [Mycobacterium tuberculosis K85]
 gi|289538803|gb|EFD43381.1| PPE family protein [Mycobacterium tuberculosis K85]
Length=384

 Score =  121 bits (303),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|289745858|ref|ZP_06505236.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
 gi|289686386|gb|EFD53874.1| PPE family protein [Mycobacterium tuberculosis 02_1987]
Length=385

 Score =  120 bits (302),  Expect = 1e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMHGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|307079711|ref|ZP_07488881.1| PPE family protein [Mycobacterium tuberculosis SUMu011]
 gi|308362459|gb|EFP51310.1| PPE family protein [Mycobacterium tuberculosis SUMu011]
Length=376

 Score =  120 bits (301),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|340626711|ref|YP_004745163.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340004901|emb|CCC44047.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
Length=385

 Score =  120 bits (301),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|31792891|ref|NP_855384.1| PPE family protein [Mycobacterium bovis AF2122/97]
 gi|224990087|ref|YP_002644774.1| PPE family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|289443162|ref|ZP_06432906.1| PPE family protein [Mycobacterium tuberculosis T46]
 18 more sequence titles
 Length=385

 Score =  120 bits (301),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|254550715|ref|ZP_05141162.1| PPE family protein [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=385

 Score =  120 bits (301),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|57116898|ref|YP_177827.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 gi|148661502|ref|YP_001283025.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
 gi|148822911|ref|YP_001287665.1| PPE family protein [Mycobacterium tuberculosis F11]
 39 more sequence titles
 Length=385

 Score =  120 bits (300),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|340626811|ref|YP_004745263.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005001|emb|CCC44149.1| PPE family protein [Mycobacterium canettii CIPT 140010059]
Length=423

 Score =  120 bits (300),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 79/171 (47%), Positives = 98/171 (58%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA   A Q   A  AYE A AA VPP ++ ANR Q  VL A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAAAQARLAVAAYEAAFAATVPPPVIAANRAQLMVLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|15841163|ref|NP_336200.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|13881383|gb|AAK46014.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|323719795|gb|EGB28909.1| PPE family protein [Mycobacterium tuberculosis CDC1551A]
Length=385

 Score =  120 bits (300),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 85/208 (41%), Positives = 112/208 (54%), Gaps = 9/208 (4%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHNENAK-------EEVIHL  202
              L+ V      +A        E + HL
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|289447416|ref|ZP_06437160.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420374|gb|EFD17575.1| PPE family protein [Mycobacterium tuberculosis CPHL_A]
Length=423

 Score =  120 bits (300),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 77/171 (46%), Positives = 96/171 (57%), Gaps = 1/171 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F  LPPEINS R+Y GPG GP+LAAA  W+ LA EL  T  G  S L  L  ++ G SS
Sbjct  2    DFGLLPPEINSGRMYTGPGPGPMLAAATAWDGLAVELHATAAGYASELSALTGAWSGPSS  61

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
             ++     PYV W++ TA HA     Q   A  AYE A AA VPP ++ ANR Q   L A
Sbjct  62   TSMASAAAPYVAWMSATAVHAELAGAQARLAIAAYEAAFAATVPPPVIAANRAQLMGLIA  121

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPE  173
             N FGQ +  I   EA Y +MW QDA  M  Y  +   A + T+ F +PP+
Sbjct  122  TNIFGQNTPAIMMTEAQYMEMWAQDAAAMYGYAGSSATASRMTA-FTEPPQ  171


>gi|240173124|ref|ZP_04751782.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=255

 Score =  120 bits (300),  Expect = 2e-25, Method: Compositional matrix adjust.
 Identities = 82/189 (44%), Positives = 109/189 (58%), Gaps = 2/189 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLE-SYRGQS  61
            +F ALPPEINS R+Y GPGSGP++AAA  W  LA +LE       S +  L    +RG +
Sbjct  26   DFTALPPEINSGRMYSGPGSGPLMAAAAAWGRLADDLETAATAYSSLILELTGLPWRGPA  85

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            + A++   LP+V WL+TTA  A + AIQ +AAA A+E A A  VPP ++ ANR     L 
Sbjct  86   ADAMVASVLPFVSWLSTTAALAEQAAIQASAAAAAFELAFALTVPPPVIVANRALLMTLV  145

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
            A NWFGQ +  IA  EA Y +MW QDA  M  Y  A        + F  PP++ + Y  +
Sbjct  146  ATNWFGQNTPAIATAEAHYAEMWVQDATAMHEY-AAAAAVASVLTPFTPPPKVTNPYPAS  204

Query  182  WMLNTVFDY  190
               +TV +Y
Sbjct  205  IPWDTVLEY  213


>gi|121637612|ref|YP_977835.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
 gi|121493259|emb|CAL71730.1| PPE family protein [Mycobacterium bovis BCG str. Pasteur 1173P2]
Length=385

 Score =  119 bits (299),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 85/207 (42%), Positives = 111/207 (54%), Gaps = 9/207 (4%)

Query  4    FWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQSS  62
            F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +S
Sbjct  3    FGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPAS  62

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
              +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L  
Sbjct  63   TLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLVT  122

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEAW  182
             N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A 
Sbjct  123  HNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAAT  181

Query  183  MLNTVFDYHNENAK-------EEVIHL  202
             L+ V      +A        E + HL
Sbjct  182  QLSAVAKAAGTSAGAAQSAIAELIAHL  208


>gi|167969175|ref|ZP_02551452.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
Length=356

 Score =  119 bits (299),  Expect = 3e-25, Method: Compositional matrix adjust.
 Identities = 85/210 (41%), Positives = 115/210 (55%), Gaps = 8/210 (3%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEA  181
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP        A
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVT-PFAPPPNTTSPSAAA  180

Query  182  WMLNTVFDYHN------ENAKEEVIHLVPD  205
              L+ V           ++A  E+I  +P+
Sbjct  181  TQLSAVAKAAGTSAGAAQSAIAELIAHLPN  210


>gi|342861296|ref|ZP_08717944.1| PPE family protein [Mycobacterium colombiense CECT 3035]
 gi|342131196|gb|EGT84477.1| PPE family protein [Mycobacterium colombiense CECT 3035]
Length=395

 Score =  119 bits (297),  Expect = 5e-25, Method: Compositional matrix adjust.
 Identities = 79/166 (48%), Positives = 96/166 (58%), Gaps = 1/166 (0%)

Query  1    MPNFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLL-ESYRG  59
            M +F ALPPEINS R+Y GPGSGP+LAAA  WN +A+E+        S +  L  E + G
Sbjct  1    MLDFAALPPEINSARMYSGPGSGPMLAAAAAWNTMAAEMRAAAASYGSVVTELSSEGWLG  60

Query  60   QSSQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTV  119
             SS +++    PY+ WL  TA  A +   Q  AAA AYE A A  VPPA+V ANR Q  +
Sbjct  61   PSSMSMLAAAAPYLAWLDGTATQAEEVGSQAFAAATAYESAFAMTVPPAVVAANRAQLAM  120

Query  120  LKAINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQST  165
            L A N FGQ +  IA  EA Y +MW QDA  M  Y  A   A Q T
Sbjct  121  LVATNIFGQNTPAIAATEAQYAEMWAQDAGAMNGYATASSAAAQFT  166


>gi|289757814|ref|ZP_06517192.1| predicted protein [Mycobacterium tuberculosis T85]
 gi|289713378|gb|EFD77390.1| predicted protein [Mycobacterium tuberculosis T85]
Length=298

 Score =  118 bits (296),  Expect = 7e-25, Method: Compositional matrix adjust.
 Identities = 78/171 (46%), Positives = 102/171 (60%), Gaps = 2/171 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPP  172
              N FGQ +  IA  EA Y +MW QDA+ M  Y  +   A + T  F  PP
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGYAGSSATATKVTP-FAPPP  171


>gi|183980708|ref|YP_001848999.1| PPE family protein [Mycobacterium marinum M]
 gi|183174034|gb|ACC39144.1| PPE family protein [Mycobacterium marinum M]
Length=444

 Score =  117 bits (294),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 73/171 (43%), Positives = 97/171 (57%), Gaps = 2/171 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLES-YRGQS  61
            +F ALPPEINS R+Y GPGS P++ AA+ W  LA+EL  T     S +  L  + ++G S
Sbjct  2    DFGALPPEINSARMYAGPGSAPLVQAARAWGRLANELNATAASYSSVIAGLGAADWQGPS  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            + ++     PYV W+ +TA  A + A Q  +AANAYE A AA+VPP  + ANR     L 
Sbjct  62   ALSMAAAAAPYVAWMRSTAAQAEQAAAQAISAANAYESAHAAIVPPGQIAANRSTMLSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPP  172
              N FGQ +  IA  EADY +MW QD + M+ Y      A    + F  PP
Sbjct  122  RSNIFGQNTPAIATSEADYSEMWAQDIVAMDGY-AGTSAAATDLAPFTSPP  171


>gi|306782177|ref|ZP_07420514.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|306790362|ref|ZP_07428684.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|306794889|ref|ZP_07433191.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
 gi|308325139|gb|EFP13990.1| PPE family protein [Mycobacterium tuberculosis SUMu002]
 gi|308333218|gb|EFP22069.1| PPE family protein [Mycobacterium tuberculosis SUMu004]
 gi|308336675|gb|EFP25526.1| PPE family protein [Mycobacterium tuberculosis SUMu005]
Length=380

 Score =  117 bits (294),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 74/153 (49%), Positives = 97/153 (64%), Gaps = 1/153 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESY-RGQS  61
            +F  LPPE+NS R+Y GPG+G +LAAA GW++LA+EL  T     S L  L   + RG +
Sbjct  2    DFALLPPEVNSARMYTGPGAGSLLAAAGGWDSLAAELATTAEAYGSVLSGLAALHWRGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            ++++     PY+ WL TTAE   +TAIQ  AAA A+EQA A  +PP +V ANR+Q   L 
Sbjct  62   AESMAVTAAPYIGWLYTTAEKTQQTAIQARAAALAFEQAYAMTLPPPVVAANRIQLLALI  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENY  154
            A N+FGQ +  IA  EA Y +MW QDA  M  Y
Sbjct  122  ATNFFGQNTAAIAATEAQYAEMWAQDAAAMYGY  154


>gi|167970194|ref|ZP_02552471.1| PPE family protein [Mycobacterium tuberculosis H37Ra]
Length=480

 Score =  117 bits (294),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 74/153 (49%), Positives = 97/153 (64%), Gaps = 1/153 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESY-RGQS  61
            +F  LPPE+NS R+Y GPG+G +LAAA GW++LA+EL  T     S L  L   + RG +
Sbjct  2    DFALLPPEVNSARMYTGPGAGSLLAAAGGWDSLAAELATTAEAYGSVLSGLAALHWRGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            ++++     PY+ WL TTAE   +TAIQ  AAA A+EQA A  +PP +V ANR+Q   L 
Sbjct  62   AESMAVTAAPYIGWLYTTAEKTQQTAIQARAAALAFEQAYAMTLPPPVVAANRIQLLALI  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENY  154
            A N+FGQ +  IA  EA Y +MW QDA  M  Y
Sbjct  122  ATNFFGQNTAAIAATEAQYAEMWAQDAAAMYGY  154


>gi|15842710|ref|NP_337747.1| PPE family protein [Mycobacterium tuberculosis CDC1551]
 gi|31794312|ref|NP_856805.1| PPE family protein [Mycobacterium bovis AF2122/97]
 gi|57117065|ref|YP_177935.1| PPE family protein [Mycobacterium tuberculosis H37Rv]
 69 more sequence titles
 Length=380

 Score =  117 bits (294),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 74/153 (49%), Positives = 97/153 (64%), Gaps = 1/153 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESY-RGQS  61
            +F  LPPE+NS R+Y GPG+G +LAAA GW++LA+EL  T     S L  L   + RG +
Sbjct  2    DFALLPPEVNSARMYTGPGAGSLLAAAGGWDSLAAELATTAEAYGSVLSGLAALHWRGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            ++++     PY+ WL TTAE   +TAIQ  AAA A+EQA A  +PP +V ANR+Q   L 
Sbjct  62   AESMAVTAAPYIGWLYTTAEKTQQTAIQARAAALAFEQAYAMTLPPPVVAANRIQLLALI  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENY  154
            A N+FGQ +  IA  EA Y +MW QDA  M  Y
Sbjct  122  ATNFFGQNTAAIAATEAQYAEMWAQDAAAMYGY  154


>gi|240171262|ref|ZP_04749921.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=415

 Score =  117 bits (293),  Expect = 1e-24, Method: Compositional matrix adjust.
 Identities = 78/180 (44%), Positives = 103/180 (58%), Gaps = 1/180 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSS  62
            +F ALPPEINS R+Y+GPGSGP+LAAA  W++LA+ L  T     S +  L   ++G +S
Sbjct  4    DFGALPPEINSGRMYIGPGSGPMLAAAAAWDSLAAGLHSTAASYSSVISGLTAGWQGPAS  63

Query  63   QALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKA  122
              +     PY  W+  TA  A +TA Q   AA A+E A AA VPP  V ANR Q   L A
Sbjct  64   ITMAAAAAPYTAWINATAAQAEQTATQARVAAVAFETAFAATVPPPAVTANRAQLMALIA  123

Query  123  INWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDPPEMADDYDEAW  182
             N+FGQ +  I   +A+Y +MW QDA  M  Y  +   A Q T  F +PP++A+     W
Sbjct  124  TNFFGQNTPAIMGTQAEYIEMWAQDAAAMYGYAGSSATASQVT-PFSEPPQIANPAGTEW  182


>gi|289761860|ref|ZP_06521238.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
 gi|289709366|gb|EFD73382.1| PPE family protein [Mycobacterium tuberculosis GM 1503]
Length=198

 Score =  117 bits (293),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 73/153 (48%), Positives = 95/153 (63%), Gaps = 1/153 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTL-LESYRGQS  61
            +F ALPPE+NS R+Y GPGS P++AAA  WN LA+EL    VG +  + TL  E + G +
Sbjct  2    DFGALPPEVNSGRMYCGPGSAPMVAAASAWNGLAAELSVAAVGYERVITTLQTEEWLGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S  +++   PYV W+  TA  A + A Q  AAA AYE A AA+VPP ++ ANR + T L 
Sbjct  62   STLMVEAVAPYVAWMRATAIQAEQAASQARAAAAAYETAFAAIVPPPLIAANRARLTSLV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENY  154
              N FGQ +  IA  EA Y +MW QDA+ M  Y
Sbjct  122  THNVFGQNTASIAATEAQYAEMWAQDAMAMYGY  154


>gi|240169713|ref|ZP_04748372.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=445

 Score =  117 bits (293),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 70/151 (47%), Positives = 90/151 (60%), Gaps = 0/151 (0%)

Query  4    FWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLESYRGQSSQ  63
            F  LPPE+NS R+Y GPG GP+LAAA  W+ LAS+L+      QS +  L   + G +S 
Sbjct  3    FAMLPPEVNSGRMYAGPGPGPMLAAAAAWDGLASDLDSAADACQSVVSQLTSGWLGPAST  62

Query  64   ALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLKAI  123
            ++      Y+ WL T+A  A +TA Q  AAA AYE+A A  VPP+++ ANR Q   L A 
Sbjct  63   SMATAASGYLAWLRTSAGQAEQTARQAMAAATAYEEAFATTVPPSVIAANRAQLAALMAT  122

Query  124  NWFGQFSTRIADKEADYEQMWFQDALVMENY  154
            N  GQ +  IA  EADY +MW QDA  M  Y
Sbjct  123  NLLGQNTPAIAATEADYAEMWAQDAAAMYGY  153


>gi|240169716|ref|ZP_04748375.1| PPE family protein [Mycobacterium kansasii ATCC 12478]
Length=453

 Score =  117 bits (292),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 69/153 (46%), Positives = 93/153 (61%), Gaps = 1/153 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLL-ESYRGQS  61
            +F ALPPEINS R+Y GPGSGP++AAA  W+ +A+EL       Q+ +  L  + +RG +
Sbjct  2    DFGALPPEINSGRMYAGPGSGPMMAAATSWDMIAAELRSMGTVYQAVISALTSQGWRGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S A++    PY+ WL+ T+  A +TA Q  AAA A+E A    VPP ++ ANR Q   L 
Sbjct  62   SAAMLGAAEPYIAWLSATSAQAEQTATQAKAAAAAFETAFMMTVPPPVIAANRAQLAALV  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENY  154
              N+FGQ +  IA  EA Y +MW QDA  M  Y
Sbjct  122  TTNFFGQNTAAIAATEAQYGEMWAQDATAMYGY  154


>gi|240172861|ref|ZP_04751520.1| PPE family protein, PPE31 [Mycobacterium kansasii ATCC 12478]
Length=401

 Score =  117 bits (292),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 81/170 (48%), Positives = 100/170 (59%), Gaps = 2/170 (1%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLL-ESYRGQS  61
            +F  LPPEINS R+Y GPGSGP+LAAA  W +LA+EL  T +   S L  L  E + G +
Sbjct  6    DFAMLPPEINSARMYSGPGSGPMLAAASAWKSLAAELRATALSYHSVLAALTGEEWYGPA  65

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S ++     PYV WL TTA  A +TA+Q  AAA AYE A  A VPP ++ ANR Q   L 
Sbjct  66   SASMAAAAAPYVAWLNTTAVQAEQTAVQAEAAAGAYEAAFGATVPPPVIAANRAQLMALI  125

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENYWEAVQEAIQSTSHFEDP  171
            A N  GQ +  IA  EA Y +MW QDA+ M  Y  +   A Q  S F +P
Sbjct  126  ATNILGQNTPAIAATEAQYTEMWAQDAMAMYGYAGSSAAATQ-LSPFVEP  174


>gi|183981528|ref|YP_001849819.1| PPE family protein, PPE51 [Mycobacterium marinum M]
 gi|183174854|gb|ACC39964.1| PPE family protein, PPE51 [Mycobacterium marinum M]
Length=382

 Score =  116 bits (291),  Expect = 3e-24, Method: Compositional matrix adjust.
 Identities = 77/153 (51%), Positives = 96/153 (63%), Gaps = 1/153 (0%)

Query  3    NFWALPPEINSTRIYLGPGSGPILAAAQGWNALASELEKTKVGLQSALDTLLE-SYRGQS  61
            +F  LPPE+NS R+Y GPGSG +LAAA  W+ALA+EL  T     S L  L + S+RG +
Sbjct  2    DFSLLPPEVNSARMYTGPGSGSLLAAAASWDALAAELGTTAETCGSILTGLTDLSWRGPA  61

Query  62   SQALIQQTLPYVQWLTTTAEHAHKTAIQLTAAANAYEQARAAMVPPAMVRANRVQTTVLK  121
            S+++     PYV WL  TAE   + AIQ   AA A+EQA A  VPP +V ANR Q  VL 
Sbjct  62   SESMAASAAPYVGWLYRTAEQTQQAAIQARTAALAFEQAYAMTVPPPLVAANRAQLLVLI  121

Query  122  AINWFGQFSTRIADKEADYEQMWFQDALVMENY  154
            A N+FGQ ++ IA  EA Y +MW QDA  M  Y
Sbjct  122  ATNFFGQNTSAIAANEAQYAEMWAQDAAAMYGY  154



Lambda     K      H
   0.315    0.129    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 336904708980


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40