BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2110c

Length=291
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609247|ref|NP_216626.1|  proteasome (beta subunit) PrcB [Myc...   577    7e-163
gi|296863655|pdb|3MKA|C  Chain C, Crystal Structure Of Mycobacter...   575    2e-162
gi|340627120|ref|YP_004745572.1|  proteasome subunit beta PrcB [M...   574    6e-162
gi|240171537|ref|ZP_04750196.1|  proteasome (beta subunit) PrcB [...   504    7e-141
gi|118617841|ref|YP_906173.1|  proteasome (beta subunit) PrcB [My...   498    6e-139
gi|118466114|ref|YP_881603.1|  PcrB protein [Mycobacterium avium ...   484    7e-135
gi|41407933|ref|NP_960769.1|  PrcB [Mycobacterium avium subsp. pa...   483    1e-134
gi|296165182|ref|ZP_06847729.1|  proteasome [Mycobacterium parasc...   483    2e-134
gi|254819642|ref|ZP_05224643.1|  PrcB [Mycobacterium intracellula...   478    6e-133
gi|90109362|pdb|2FHG|H  Chain H, Crystal Structure Of Mycobacteri...   464    1e-128
gi|258588387|pdb|3H6F|C  Chain C, Crystal Structure Of Mycobacter...   462    3e-128
gi|333990435|ref|YP_004523049.1|  proteasome (beta subunit) PrcB ...   447    1e-123
gi|342859803|ref|ZP_08716456.1|  proteasome subunit beta [Mycobac...   435    4e-120
gi|259535829|sp|A0QZ47.2|PSB_MYCS2  RecName: Full=Proteasome subu...   427    9e-118
gi|118468051|ref|YP_888185.1|  proteasome subunit beta [Mycobacte...   425    5e-117
gi|108800096|ref|YP_640293.1|  proteasome subunit beta [Mycobacte...   425    5e-117
gi|15827687|ref|NP_301950.1|  proteasome [beta]-type subunit 2 [M...   422    3e-116
gi|145223664|ref|YP_001134342.1|  20S proteasome, A and B subunit...   416    2e-114
gi|120404421|ref|YP_954250.1|  20S proteasome, A and B subunits [...   409    4e-112
gi|169629258|ref|YP_001702907.1|  proteasome (subunit beta) PrcB ...   348    4e-94 
gi|312139722|ref|YP_004007058.1|  20S proteasome beta subunit prc...   335    5e-90 
gi|325676828|ref|ZP_08156501.1|  proteasome, beta subunit [Rhodoc...   335    6e-90 
gi|75491633|sp|Q53079.1|PSB1_RHOER  RecName: Full=Proteasome subu...   333    2e-89 
gi|40889405|pdb|1Q5R|H  Chain H, The Rhodococcus 20s Proteasome W...   330    1e-88 
gi|226359996|ref|YP_002777774.1|  20S proteasome beta-type subuni...   330    2e-88 
gi|112491166|pdb|2H6J|H  Chain H, Crystal Structure Of The Beta F...   329    2e-88 
gi|302595915|sp|Q0SIF9.2|PSB_RHOSR  RecName: Full=Proteasome subu...   329    4e-88 
gi|229493495|ref|ZP_04387280.1|  proteasome, beta subunit [Rhodoc...   327    2e-87 
gi|226306661|ref|YP_002766621.1|  20S proteasome beta-type subuni...   325    4e-87 
gi|343927937|ref|ZP_08767403.1|  20S proteasome beta-type subunit...   323    3e-86 
gi|262202389|ref|YP_003273597.1|  20S proteasome A and subunit Bs...   322    4e-86 
gi|333919677|ref|YP_004493258.1|  proteasome [Amycolicicoccus sub...   322    6e-86 
gi|54025141|ref|YP_119383.1|  putative proteasome subunit beta [N...   313    2e-83 
gi|111017863|ref|YP_700835.1|  proteasome beta subunit [Rhodococc...   307    2e-81 
gi|256376367|ref|YP_003100027.1|  20S proteasome subunits A and B...   306    3e-81 
gi|134098820|ref|YP_001104481.1|  20S proteasome beta-subunit pre...   302    4e-80 
gi|291005825|ref|ZP_06563798.1|  proteasome subunit beta [Sacchar...   302    4e-80 
gi|40889391|pdb|1Q5Q|H  Chain H, The Rhodococcus 20s Proteasome >...   301    7e-80 
gi|257056206|ref|YP_003134038.1|  proteasome endopeptidase comple...   292    4e-77 
gi|302527206|ref|ZP_07279548.1|  proteasome endopeptidase complex...   290    2e-76 
gi|296394010|ref|YP_003658894.1|  20S proteasome subunits AB [Seg...   288    5e-76 
gi|317507302|ref|ZP_07965044.1|  proteasome A-type and B-type [Se...   288    7e-76 
gi|300786771|ref|YP_003767062.1|  proteasome beta subunit [Amycol...   286    3e-75 
gi|326382282|ref|ZP_08203974.1|  20S proteasome A and subunit Bs ...   283    2e-74 
gi|324999221|ref|ZP_08120333.1|  proteasome subunit beta [Pseudon...   278    8e-73 
gi|117928395|ref|YP_872946.1|  proteasome subunit beta [Acidother...   275    7e-72 
gi|291301921|ref|YP_003513199.1|  20S proteasome subunits A/B [St...   273    3e-71 
gi|145593571|ref|YP_001157868.1|  20S proteasome subunits A and B...   271    7e-71 
gi|145559628|gb|ABP73653.1|  SalI [Salinispora tropica]                271    7e-71 
gi|296139866|ref|YP_003647109.1|  20S proteasome subunits A and B...   270    1e-70 


>gi|15609247|ref|NP_216626.1| proteasome (beta subunit) PrcB [Mycobacterium tuberculosis H37Rv]
 gi|15841602|ref|NP_336639.1| proteasome, beta subunit [Mycobacterium tuberculosis CDC1551]
 gi|31793290|ref|NP_855783.1| proteasome (beta subunit) PrcB [Mycobacterium bovis AF2122/97]
 85 more sequence titles
 Length=291

 Score =  577 bits (1487),  Expect = 7e-163, Method: Compositional matrix adjust.
 Identities = 290/291 (99%), Positives = 291/291 (100%), Gaps = 0/291 (0%)

Query  1    VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60
            +TWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI
Sbjct  1    MTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60

Query  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120
            VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120

Query  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180
            EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF
Sbjct  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180

Query  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240
            DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG
Sbjct  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240

Query  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291


>gi|296863655|pdb|3MKA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome 
With Propetide And An T1a Mutation At Beta-Subunit
 gi|296863657|pdb|3MKA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome 
With Propetide And An T1a Mutation At Beta-Subunit
 gi|296863659|pdb|3MKA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome 
With Propetide And An T1a Mutation At Beta-Subunit
 11 more sequence titles
 Length=291

 Score =  575 bits (1482),  Expect = 2e-162, Method: Compositional matrix adjust.
 Identities = 289/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%)

Query  1    VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60
            +TWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHG TI
Sbjct  1    MTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGATI  60

Query  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120
            VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120

Query  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180
            EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF
Sbjct  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180

Query  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240
            DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG
Sbjct  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240

Query  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291


>gi|340627120|ref|YP_004745572.1| proteasome subunit beta PrcB [Mycobacterium canettii CIPT 140010059]
 gi|340005310|emb|CCC44466.1| proteasome (beta subunit) PrcB [Mycobacterium canettii CIPT 140010059]
Length=291

 Score =  574 bits (1479),  Expect = 6e-162, Method: Compositional matrix adjust.
 Identities = 288/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%)

Query  1    VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60
            +TWPLPDRLSINSLSGTPAVDLSSF DFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI
Sbjct  1    MTWPLPDRLSINSLSGTPAVDLSSFADFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60

Query  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120
            VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120

Query  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180
            EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL+ALPLLAGYDIHASDPQSAGRIVSF
Sbjct  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLVALPLLAGYDIHASDPQSAGRIVSF  180

Query  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240
            DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG
Sbjct  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240

Query  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291


>gi|240171537|ref|ZP_04750196.1| proteasome (beta subunit) PrcB [Mycobacterium kansasii ATCC 12478]
Length=288

 Score =  504 bits (1298),  Expect = 7e-141, Method: Compositional matrix adjust.
 Identities = 255/291 (88%), Positives = 269/291 (93%), Gaps = 3/291 (1%)

Query  1    VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60
            +TWPLPDRLS  S     AVDLSSF DFLRRQAPELLPA + GGA  +    QLPHGTTI
Sbjct  1    MTWPLPDRLSPKSALSGSAVDLSSFADFLRRQAPELLPAGVGGGAQPSD---QLPHGTTI  57

Query  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120
            VALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct  58   VALKYPGGVVIAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAVAVEFARLYAVEL  117

Query  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180
            EHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDIHA+DPQ+AGRIVSF
Sbjct  118  EHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLIALPLLAGYDIHAADPQTAGRIVSF  177

Query  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240
            DAAGGWNIEEEGYQ+VGSGSLFAKSSMKKLYSQVTDGDS LRVAVEALYDAADDDSATGG
Sbjct  178  DAAGGWNIEEEGYQSVGSGSLFAKSSMKKLYSQVTDGDSALRVAVEALYDAADDDSATGG  237

Query  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            PDLVRGI+PTAV IDADGAVD+PESRIAELAR +I SRS ADTFG DGGEK
Sbjct  238  PDLVRGIYPTAVAIDADGAVDIPESRIAELARDVIGSRSRADTFGPDGGEK  288


>gi|118617841|ref|YP_906173.1| proteasome (beta subunit) PrcB [Mycobacterium ulcerans Agy99]
 gi|183983084|ref|YP_001851375.1| proteasome (beta subunit) PrcB [Mycobacterium marinum M]
 gi|302595767|sp|B2HFV6.1|PSB_MYCMM RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|302595774|sp|A0PQT3.1|PSB_MYCUA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|118569951|gb|ABL04702.1| proteasome (beta subunit) PrcB [Mycobacterium ulcerans Agy99]
 gi|183176410|gb|ACC41520.1| proteasome (beta subunit) PrcB [Mycobacterium marinum M]
Length=289

 Score =  498 bits (1281),  Expect = 6e-139, Method: Compositional matrix adjust.
 Identities = 251/291 (87%), Positives = 266/291 (92%), Gaps = 2/291 (0%)

Query  1    VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI  60
            +TWPLPDRLSINS     AVDLSSF +FLRRQAPELLPASI  G    G   QLPH TTI
Sbjct  1    MTWPLPDRLSINSAISGSAVDLSSFAEFLRRQAPELLPASIKHGGGAVGD--QLPHATTI  58

Query  61   VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL  120
            VALKYPGGV++AGDRRSTQGNMI+GRDVRKVYITDDYTATGIAGTAA+AVEFARLYAVEL
Sbjct  59   VALKYPGGVLIAGDRRSTQGNMIAGRDVRKVYITDDYTATGIAGTAAIAVEFARLYAVEL  118

Query  121  EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF  180
            EHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLA YDIHASDP+SAGRIVSF
Sbjct  119  EHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLASYDIHASDPRSAGRIVSF  178

Query  181  DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG  240
            DAAGGWNIEEEGYQAVGSGS+FAKSS+KKLY+QVTD DS LRVAVEALYDAADDDSATGG
Sbjct  179  DAAGGWNIEEEGYQAVGSGSIFAKSSIKKLYAQVTDADSALRVAVEALYDAADDDSATGG  238

Query  241  PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            PDLVRGI+PTAV I+ADGAVDVPE RIAELAR +I SRS ADTFG DGGEK
Sbjct  239  PDLVRGIYPTAVTINADGAVDVPEVRIAELAREVIGSRSRADTFGPDGGEK  289


>gi|118466114|ref|YP_881603.1| PcrB protein [Mycobacterium avium 104]
 gi|302595761|sp|A0QFB5.1|PSB_MYCA1 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|118167401|gb|ABK68298.1| PcrB protein [Mycobacterium avium 104]
Length=303

 Score =  484 bits (1246),  Expect = 7e-135, Method: Compositional matrix adjust.
 Identities = 246/303 (82%), Positives = 269/303 (89%), Gaps = 12/303 (3%)

Query  1    VTWPLPDRLSINS------LSGTPAVDLSSFTDFLRRQAPELLPASI----SGGAPLAGG  50
            +TW  PDRLS NS       SG PAVDLSSF DFLRRQAPELLPA++    SG A  +GG
Sbjct  1    MTWQFPDRLSTNSALPGPAFSGQPAVDLSSFADFLRRQAPELLPAALGGAQSGPASSSGG  60

Query  51   DAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAV  110
              QLPHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AV
Sbjct  61   TGQLPHGTTIVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAIAV  120

Query  111  EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD  170
            EFARLYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDI A D
Sbjct  121  EFARLYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLAGYDIDARD  180

Query  171  PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD  230
            P+ AGRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYSQV D DS +RVA+EALYD
Sbjct  181  PEGAGRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSQVVDADSAVRVAIEALYD  240

Query  231  AADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD--G  288
            AADDDSATGGPDLVRGI+PTAV I A+GA++VPESRIAELAR +I+SRS ADTFG D  G
Sbjct  241  AADDDSATGGPDLVRGIYPTAVTIGAEGALEVPESRIAELAREVIQSRSRADTFGPDAAG  300

Query  289  GEK  291
            G+K
Sbjct  301  GDK  303


>gi|41407933|ref|NP_960769.1| PrcB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|254775073|ref|ZP_05216589.1| PrcB [Mycobacterium avium subsp. avium ATCC 25291]
 gi|81571311|sp|Q73YW8.1|PSB_MYCPA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|41396287|gb|AAS04152.1| PrcB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|336461987|gb|EGO40836.1| proteasome, beta subunit, bacterial type [Mycobacterium avium 
subsp. paratuberculosis S397]
Length=303

 Score =  483 bits (1244),  Expect = 1e-134, Method: Compositional matrix adjust.
 Identities = 246/303 (82%), Positives = 269/303 (89%), Gaps = 12/303 (3%)

Query  1    VTWPLPDRLSINS------LSGTPAVDLSSFTDFLRRQAPELLPASI----SGGAPLAGG  50
            +TW  PDRLS NS       SG PAVDLSSF DFLRRQAPELLPA++    SG A  +GG
Sbjct  1    MTWQFPDRLSTNSALPGPAFSGQPAVDLSSFADFLRRQAPELLPAALGGAQSGPASSSGG  60

Query  51   DAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAV  110
              QLPHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AV
Sbjct  61   TGQLPHGTTIVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAIAV  120

Query  111  EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD  170
            EFARLYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDI A D
Sbjct  121  EFARLYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLAGYDIDAPD  180

Query  171  PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD  230
            P+ AGRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYSQV D DS +RVA+EALYD
Sbjct  181  PEGAGRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSQVVDADSAVRVAIEALYD  240

Query  231  AADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD--G  288
            AADDDSATGGPDLVRGI+PTAV I A+GA++VPESRIAELAR +I+SRS ADTFG D  G
Sbjct  241  AADDDSATGGPDLVRGIYPTAVTIGAEGALEVPESRIAELAREVIQSRSRADTFGPDAAG  300

Query  289  GEK  291
            G+K
Sbjct  301  GDK  303


>gi|296165182|ref|ZP_06847729.1| proteasome [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295899371|gb|EFG78830.1| proteasome [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=297

 Score =  483 bits (1242),  Expect = 2e-134, Method: Compositional matrix adjust.
 Identities = 247/297 (84%), Positives = 267/297 (90%), Gaps = 6/297 (2%)

Query  1    VTWPLPDRLSINS------LSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQL  54
            +TWP  DRLS NS      LS  PAVDLSSF DFLRRQAP+LLPAS+ GGA   G  AQL
Sbjct  1    MTWPFSDRLSTNSALPGSALSRNPAVDLSSFADFLRRQAPDLLPASLGGGAHGDGAGAQL  60

Query  55   PHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFAR  114
            PHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVY+TDDYTATGIAGTAA+AVEFAR
Sbjct  61   PHGTTIVALKYPGGVVIAGDRRSTQGNMIAGRDVKKVYVTDDYTATGIAGTAAIAVEFAR  120

Query  115  LYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSA  174
            LYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDI A DP+ A
Sbjct  121  LYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLAGYDIGAPDPEGA  180

Query  175  GRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADD  234
            GRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYS+V D DS +RVAVEALYDAADD
Sbjct  181  GRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSRVVDADSAVRVAVEALYDAADD  240

Query  235  DSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            DSATGGPDLVRGI+PTAV I A+GA +VPESRIAELAR +IESRS ADTFG DGGEK
Sbjct  241  DSATGGPDLVRGIYPTAVTIGAEGAAEVPESRIAELAREVIESRSRADTFGPDGGEK  297


>gi|254819642|ref|ZP_05224643.1| PrcB [Mycobacterium intracellulare ATCC 13950]
Length=292

 Score =  478 bits (1229),  Expect = 6e-133, Method: Compositional matrix adjust.
 Identities = 243/293 (83%), Positives = 261/293 (90%), Gaps = 3/293 (1%)

Query  1    VTWPLPDRLSINS-LSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTT  59
            +TW   DRL INS L G PAVDLSSF DFLRRQAPELLPAS  G        AQLPHGTT
Sbjct  1    MTWQFSDRLPINSALPGNPAVDLSSFADFLRRQAPELLPASF-GAVQSESAGAQLPHGTT  59

Query  60   IVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVE  119
            IVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVE
Sbjct  60   IVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAIAVEFARLYAVE  119

Query  120  LEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS  179
            LEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLL GYDI A DP+ AGRIVS
Sbjct  120  LEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLVGYDIDAPDPEGAGRIVS  179

Query  180  FDAAGGWNI-EEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT  238
            FDAAGGWN+ EEEGYQ+VGSGS+FAKSSMKKLYSQVTD DS +RVA+EALYDAADDDSAT
Sbjct  180  FDAAGGWNLEEEEGYQSVGSGSIFAKSSMKKLYSQVTDADSAVRVAIEALYDAADDDSAT  239

Query  239  GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            GGPDLVRGI+PTAV I  +GA+DVPE RIAELAR +I+SRS ADTFG DGGEK
Sbjct  240  GGPDLVRGIYPTAVTIGPEGALDVPEGRIAELAREVIQSRSRADTFGPDGGEK  292


>gi|90109362|pdb|2FHG|H Chain H, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
 gi|90109364|pdb|2FHG|C Chain C, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
 gi|90109366|pdb|2FHG|E Chain E, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
 69 more sequence titles
 Length=240

 Score =  464 bits (1193),  Expect = 1e-128, Method: Compositional matrix adjust.
 Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)

Query  58   TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA  117
            TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA
Sbjct  1    TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA  60

Query  118  VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI  177
            VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI
Sbjct  61   VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI  120

Query  178  VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA  237
            VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA
Sbjct  121  VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA  180

Query  238  TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct  181  TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  234


>gi|258588387|pdb|3H6F|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome 
Modified By Inhibitor Ht1171
 gi|258588389|pdb|3H6F|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome 
Modified By Inhibitor Ht1171
 gi|258588391|pdb|3H6F|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome 
Modified By Inhibitor Ht1171
 65 more sequence titles
 Length=240

 Score =  462 bits (1188),  Expect = 3e-128, Method: Compositional matrix adjust.
 Identities = 233/233 (100%), Positives = 233/233 (100%), Gaps = 0/233 (0%)

Query  59   TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV  118
            TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV
Sbjct  2    TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV  61

Query  119  ELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIV  178
            ELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIV
Sbjct  62   ELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIV  121

Query  179  SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT  238
            SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT
Sbjct  122  SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT  181

Query  239  GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct  182  GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  234


>gi|333990435|ref|YP_004523049.1| proteasome (beta subunit) PrcB [Mycobacterium sp. JDM601]
 gi|333486403|gb|AEF35795.1| proteasome (beta subunit) PrcB [Mycobacterium sp. JDM601]
Length=277

 Score =  447 bits (1149),  Expect = 1e-123, Method: Compositional matrix adjust.
 Identities = 226/260 (87%), Positives = 240/260 (93%), Gaps = 2/260 (0%)

Query  20   VDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQ  79
            VDLSSF+DFLRRQAP+LLPA  +G +  + G A+LPHGTTIVALKYPGGVVMAGDRRSTQ
Sbjct  6    VDLSSFSDFLRRQAPDLLPAGSAGLS--SAGTAELPHGTTIVALKYPGGVVMAGDRRSTQ  63

Query  80   GNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINR  139
            GNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVELEHYEKLEGVPLTFAGK+NR
Sbjct  64   GNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVPLTFAGKVNR  123

Query  140  LAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG  199
            LAIMVRGNL AAMQGLLALPLL  YDI   D Q AGRIVSFDAAGGWN+EEEGYQAVGSG
Sbjct  124  LAIMVRGNLGAAMQGLLALPLLVAYDIDDPDGQHAGRIVSFDAAGGWNVEEEGYQAVGSG  183

Query  200  SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGA  259
            SLFAKSSMKKLY+QV D DS LRVAVEALYDAADDDSATGGPDLVRGI+PTAV IDADGA
Sbjct  184  SLFAKSSMKKLYAQVADADSALRVAVEALYDAADDDSATGGPDLVRGIYPTAVSIDADGA  243

Query  260  VDVPESRIAELARAIIESRS  279
            VDVPESRIAELAR IIESR+
Sbjct  244  VDVPESRIAELAREIIESRT  263


>gi|342859803|ref|ZP_08716456.1| proteasome subunit beta [Mycobacterium colombiense CECT 3035]
 gi|342132935|gb|EGT86155.1| proteasome subunit beta [Mycobacterium colombiense CECT 3035]
Length=255

 Score =  435 bits (1118),  Expect = 4e-120, Method: Compositional matrix adjust.
 Identities = 216/256 (85%), Positives = 238/256 (93%), Gaps = 1/256 (0%)

Query  36   LLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITD  95
            +LPAS+SG    A    QLPHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITD
Sbjct  1    MLPASLSGTQSDAA-TGQLPHGTTIVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITD  59

Query  96   DYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL  155
            DYTATGIAGTAA+AVEFARLYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL
Sbjct  60   DYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGL  119

Query  156  LALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVT  215
            +ALPLL GYDI A+DP+ AGRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYSQVT
Sbjct  120  VALPLLVGYDIDAADPEGAGRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSQVT  179

Query  216  DGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAII  275
            D DS +RVA+EALYDAADDDSATGGPDLVRGI+PTAV I A+GA++VPE+RIAELAR +I
Sbjct  180  DADSAVRVAIEALYDAADDDSATGGPDLVRGIYPTAVTIGAEGALEVPEARIAELAREVI  239

Query  276  ESRSGADTFGSDGGEK  291
            +SRS ADTFG DGGEK
Sbjct  240  QSRSRADTFGPDGGEK  255


>gi|259535829|sp|A0QZ47.2|PSB_MYCS2 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|2293463|gb|AAC45614.1| proteasome beta subunit [Mycobacterium smegmatis str. MC2 155]
Length=303

 Score =  427 bits (1098),  Expect = 9e-118, Method: Compositional matrix adjust.
 Identities = 219/288 (77%), Positives = 247/288 (86%), Gaps = 5/288 (1%)

Query  2    TWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTT  59
            ++P P  L+   +   P VDLSSF++ L RQAPELLP +    G  P+   DA +PHGTT
Sbjct  8    SFPQP-TLNTTGIPSVP-VDLSSFSELLSRQAPELLPVNRVAYGTTPVGPTDA-VPHGTT  64

Query  60   IVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVE  119
            IVALKYPGGV++AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVE
Sbjct  65   IVALKYPGGVLIAGDRRSTQGNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLYAVE  124

Query  120  LEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS  179
            LEHYEKLEGVPLTF GK+NRLAIMVRGNL AA+QG +ALPLL GYD+    P+ AGRIVS
Sbjct  125  LEHYEKLEGVPLTFRGKVNRLAIMVRGNLGAALQGFVALPLLVGYDLDDPHPEGAGRIVS  184

Query  180  FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATG  239
            FDAAGGWNIEEEGYQ+VGSGS+FAKSSMKKLYSQV+D DS L+VAVEALYDAADDDSATG
Sbjct  185  FDAAGGWNIEEEGYQSVGSGSIFAKSSMKKLYSQVSDADSALKVAVEALYDAADDDSATG  244

Query  240  GPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD  287
            GPDLVRGI+PTAV I A+GA +VPE+RIAELAR +IESRS  DTFG D
Sbjct  245  GPDLVRGIYPTAVTIGAEGAEEVPETRIAELAREVIESRSRTDTFGPD  292


>gi|118468051|ref|YP_888185.1| proteasome subunit beta [Mycobacterium smegmatis str. MC2 155]
 gi|118169338|gb|ABK70234.1| proteasome beta subunit [Mycobacterium smegmatis str. MC2 155]
Length=280

 Score =  425 bits (1092),  Expect = 5e-117, Method: Compositional matrix adjust.
 Identities = 214/270 (80%), Positives = 239/270 (89%), Gaps = 3/270 (1%)

Query  20   VDLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRS  77
            +DLSSF++ L RQAPELLP +    G  P+   DA +PHGTTIVALKYPGGV++AGDRRS
Sbjct  1    MDLSSFSELLSRQAPELLPVNRVAYGTTPVGPTDA-VPHGTTIVALKYPGGVLIAGDRRS  59

Query  78   TQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKI  137
            TQGNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVELEHYEKLEGVPLTF GK+
Sbjct  60   TQGNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVPLTFRGKV  119

Query  138  NRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVG  197
            NRLAIMVRGNL AA+QG +ALPLL GYD+    P+ AGRIVSFDAAGGWNIEEEGYQ+VG
Sbjct  120  NRLAIMVRGNLGAALQGFVALPLLVGYDLDDPHPEGAGRIVSFDAAGGWNIEEEGYQSVG  179

Query  198  SGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD  257
            SGS+FAKSSMKKLYSQV+D DS L+VAVEALYDAADDDSATGGPDLVRGI+PTAV I A+
Sbjct  180  SGSIFAKSSMKKLYSQVSDADSALKVAVEALYDAADDDSATGGPDLVRGIYPTAVTIGAE  239

Query  258  GAVDVPESRIAELARAIIESRSGADTFGSD  287
            GA +VPE+RIAELAR +IESRS  DTFG D
Sbjct  240  GAEEVPETRIAELAREVIESRSRTDTFGPD  269


>gi|108800096|ref|YP_640293.1| proteasome subunit beta [Mycobacterium sp. MCS]
 gi|119869223|ref|YP_939175.1| proteasome subunit beta [Mycobacterium sp. KMS]
 gi|126435720|ref|YP_001071411.1| proteasome subunit beta [Mycobacterium sp. JLS]
 6 more sequence titles
 Length=304

 Score =  425 bits (1092),  Expect = 5e-117, Method: Compositional matrix adjust.
 Identities = 221/298 (75%), Positives = 249/298 (84%), Gaps = 14/298 (4%)

Query  1    VTWPLPDRLSINSLS---------GTPAV--DLSSFTDFLRRQAPELLPASISGGAPLAG  49
            +TWP  ++L+   LS         G P+V  DLSSF+D LRRQAP LLP    G A L  
Sbjct  1    MTWPHFEQLAFPDLSRHSSHSTTRGVPSVPMDLSSFSDMLRRQAPHLLP--FRGDASLTP  58

Query  50   GDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA  109
             DA +PHGTTIVALK+PGGVVMAGDRR+TQGNMI+ RDV+KVYITDDYTATGIAGTAA+A
Sbjct  59   TDA-VPHGTTIVALKFPGGVVMAGDRRATQGNMIASRDVQKVYITDDYTATGIAGTAAIA  117

Query  110  VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHAS  169
            VEFARLYAVELEHYEKLEGV LTFAGK+NRLA MVRGNL AA+QG +ALPLLAG+D+   
Sbjct  118  VEFARLYAVELEHYEKLEGVALTFAGKVNRLATMVRGNLGAALQGFVALPLLAGFDLDDP  177

Query  170  DPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY  229
            DPQ+AGRIVSFDAAGG N+EEEG+Q+VGSGS+FAKSSMKKLY QVTD DS LRVAVEALY
Sbjct  178  DPQAAGRIVSFDAAGGHNLEEEGFQSVGSGSIFAKSSMKKLYHQVTDADSALRVAVEALY  237

Query  230  DAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD  287
            DAADDDSATGGPDLVRGIFPTAV+I ADGA +V + RIA LAR +I++RS ADTFG D
Sbjct  238  DAADDDSATGGPDLVRGIFPTAVLITADGAEEVTQERIAGLAREVIQNRSRADTFGPD  295


>gi|15827687|ref|NP_301950.1| proteasome [beta]-type subunit 2 [Mycobacterium leprae TN]
 gi|221230164|ref|YP_002503580.1| proteasome beta-type subunit 2 [Mycobacterium leprae Br4923]
 gi|81346071|sp|Q49780.1|PSB_MYCLE RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|302595766|sp|B8ZRF3.1|PSB_MYCLB RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|467003|gb|AAA17188.1| prcB [Mycobacterium leprae]
 gi|4200274|emb|CAA22933.1| putative proteasome beta-type subunit 2 [Mycobacterium leprae]
 gi|13093238|emb|CAC31703.1| proteasome [beta]-type subunit 2 [Mycobacterium leprae]
 gi|219933271|emb|CAR71417.1| proteasome [beta]-type subunit 2 [Mycobacterium leprae Br4923]
Length=291

 Score =  422 bits (1085),  Expect = 3e-116, Method: Compositional matrix adjust.
 Identities = 234/292 (81%), Positives = 252/292 (87%), Gaps = 3/292 (1%)

Query  1    VTWPLPDRLSIN-SLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTT  59
            +T   PDRL  N +  G   ++ SSF D LRRQAPELLP  +S G   +GG  QL HGTT
Sbjct  1    MTRSFPDRLPTNLAFPGISVINQSSFVDLLRRQAPELLP--VSLGGGQSGGGQQLSHGTT  58

Query  60   IVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVE  119
            IV LKYPGGVV+AGDRRSTQGNMI+GRDVRKVYITDDYTATGIAG AAVAVEFARLYAVE
Sbjct  59   IVVLKYPGGVVIAGDRRSTQGNMIAGRDVRKVYITDDYTATGIAGIAAVAVEFARLYAVE  118

Query  120  LEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS  179
            LEHYEKLEGVPLTFAGK+NRLAIMVR NL AAMQGLLALPLLAGYDIHA DPQSAGRIVS
Sbjct  119  LEHYEKLEGVPLTFAGKVNRLAIMVRSNLTAAMQGLLALPLLAGYDIHAPDPQSAGRIVS  178

Query  180  FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATG  239
            FDAAGGWNIEEEGYQ+VGSGS+FAKSS+KKLYSQV+D DS LRVA+EALYDAADDDSATG
Sbjct  179  FDAAGGWNIEEEGYQSVGSGSIFAKSSIKKLYSQVSDADSALRVAIEALYDAADDDSATG  238

Query  240  GPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK  291
            GPDLVRGI+PTAV I A+GA +V ESRIAELAR IIESRS A T GS GG +
Sbjct  239  GPDLVRGIYPTAVTIGAEGAAEVTESRIAELAREIIESRSRAYTLGSFGGSE  290


>gi|145223664|ref|YP_001134342.1| 20S proteasome, A and B subunits [Mycobacterium gilvum PYR-GCK]
 gi|315443990|ref|YP_004076869.1| proteasome endopeptidase complex, beta component [Mycobacterium 
sp. Spyr1]
 gi|302595765|sp|A4TB64.1|PSB_MYCGI RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|145216150|gb|ABP45554.1| proteasome endopeptidase complex, beta component. Threonine peptidase. 
MEROPS family T01B [Mycobacterium gilvum PYR-GCK]
 gi|315262293|gb|ADT99034.1| proteasome endopeptidase complex, beta component [Mycobacterium 
sp. Spyr1]
Length=303

 Score =  416 bits (1070),  Expect = 2e-114, Method: Compositional matrix adjust.
 Identities = 212/297 (72%), Positives = 242/297 (82%), Gaps = 13/297 (4%)

Query  1    VTWP----------LPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGG  50
            +TWP          LP     +S      V+LSSF+DFLR QAP LLP S   G+P    
Sbjct  1    MTWPDRDTSAFPSALPGAFDASSAMSRGVVNLSSFSDFLRTQAPHLLPVS---GSPGVTP  57

Query  51   DAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAV  110
               +PHGTTIVALK+PGGVVMAGDRR+TQG+MI+ RDV+KVYITDDYT TGIAGTAA+AV
Sbjct  58   SDAVPHGTTIVALKFPGGVVMAGDRRATQGHMIASRDVQKVYITDDYTVTGIAGTAAIAV  117

Query  111  EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD  170
            EFARLYAVELEHYEKLEGV LTF GK+NRLA MVRGNL AA+QG +ALPLLAGYD+   +
Sbjct  118  EFARLYAVELEHYEKLEGVALTFPGKVNRLATMVRGNLGAALQGFVALPLLAGYDLDDPN  177

Query  171  PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD  230
            P+ AGRIVSFDAAGG N+EEEGYQ+VGSGS+FAKSSMKKLYSQVTD DS LRVA+EALYD
Sbjct  178  PEGAGRIVSFDAAGGHNLEEEGYQSVGSGSIFAKSSMKKLYSQVTDADSALRVAIEALYD  237

Query  231  AADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD  287
            AADDDSATGGPDLVRGIFPTAV+I ADGAV++ E +IA++ R II++RS ADTFG D
Sbjct  238  AADDDSATGGPDLVRGIFPTAVVITADGAVEIAEQQIADMCREIIQNRSRADTFGPD  294


>gi|120404421|ref|YP_954250.1| 20S proteasome, A and B subunits [Mycobacterium vanbaalenii PYR-1]
 gi|302595775|sp|A1TAP4.1|PSB_MYCVP RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|119957239|gb|ABM14244.1| proteasome endopeptidase complex, beta component, Threonine peptidase, 
MEROPS family T01B [Mycobacterium vanbaalenii PYR-1]
Length=306

 Score =  409 bits (1050),  Expect = 4e-112, Method: Compositional matrix adjust.
 Identities = 213/298 (72%), Positives = 243/298 (82%), Gaps = 12/298 (4%)

Query  1    VTWPLPDRLSINS-----LSGTP------AVDLSSFTDFLRRQAPELLPASISGGAPLAG  49
            +TWP  D+ +  S      S  P       V+LSSF+DFLR QAP LLP +   G     
Sbjct  1    MTWPNRDQPAFPSSSSGAFSALPQGVSHGGVNLSSFSDFLRHQAPHLLPGAPGPGPTGLP  60

Query  50   GDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA  109
             DA +PHGTTIVALK PGGVVMAGDRR+TQGNMI+ RDV+KVYITDDYT TGIAGTAA+A
Sbjct  61   TDA-VPHGTTIVALKCPGGVVMAGDRRATQGNMIASRDVQKVYITDDYTVTGIAGTAAIA  119

Query  110  VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHAS  169
            VEFARLYAVELEHYEKLEGV LTF GK+NRLA MVRGNL AA+QG +ALPLLAGYD+   
Sbjct  120  VEFARLYAVELEHYEKLEGVALTFPGKVNRLATMVRGNLGAALQGFVALPLLAGYDLDDP  179

Query  170  DPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY  229
            +P++AGRIVSFDAAGGWN EEEGYQ+VGSGS+FAKSSMKKLYSQVTD +S LRVAVEALY
Sbjct  180  NPEAAGRIVSFDAAGGWNFEEEGYQSVGSGSIFAKSSMKKLYSQVTDAESALRVAVEALY  239

Query  230  DAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD  287
            DAADDDSATGGPDLVRGIFPTAV+I ADGA +VPE++I+ L R ++E+RS  +TFG D
Sbjct  240  DAADDDSATGGPDLVRGIFPTAVVIGADGAHEVPEAKISSLCREVVENRSRTETFGPD  297


>gi|169629258|ref|YP_001702907.1| proteasome (subunit beta) PrcB [Mycobacterium abscessus ATCC 
19977]
 gi|302595762|sp|B1MAI2.1|PSB_MYCA9 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|169241225|emb|CAM62253.1| Proteasome (beta subunit) PrcB [Mycobacterium abscessus]
Length=292

 Score =  348 bits (894),  Expect = 4e-94, Method: Compositional matrix adjust.
 Identities = 179/260 (69%), Positives = 212/260 (82%), Gaps = 3/260 (1%)

Query  22   LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN  81
            LSSF+++LR QAPELLPA     A + G    LPHGTTIVAL Y GGV++AGDRR+TQGN
Sbjct  22   LSSFSEYLRAQAPELLPALGKASADVIG---NLPHGTTIVALTYRGGVLIAGDRRATQGN  78

Query  82   MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA  141
             I+ RD+ KV ITD+Y+ATGIAGTAA+AVEFARLYAVELEHYEKLEGV LTF GK NRL+
Sbjct  79   YIANRDIDKVQITDNYSATGIAGTAAIAVEFARLYAVELEHYEKLEGVQLTFNGKANRLS  138

Query  142  IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL  201
             +VRGNLAAAMQGL+A+PLL GYD+   + ++AGRIVSFD AGGW++E +GYQAVGSGS+
Sbjct  139  ALVRGNLAAAMQGLVAVPLLVGYDLDDPNGETAGRIVSFDVAGGWHVESDGYQAVGSGSV  198

Query  202  FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD  261
            FAKSS+KKLY    D  + L VAVEALYDAADDDSATGGPDLVR +FPTA+ ID+ GAV 
Sbjct  199  FAKSSIKKLYRPGGDALTALAVAVEALYDAADDDSATGGPDLVRRVFPTAIRIDSGGAVR  258

Query  262  VPESRIAELARAIIESRSGA  281
            VPE+ I  +AR +I  R+ A
Sbjct  259  VPEADIERIAREVIAKRTEA  278


>gi|312139722|ref|YP_004007058.1| 20S proteasome beta subunit prcb [Rhodococcus equi 103S]
 gi|311889061|emb|CBH48374.1| putative 20S proteasome beta subunit PrcB [Rhodococcus equi 103S]
Length=284

 Score =  335 bits (859),  Expect = 5e-90, Method: Compositional matrix adjust.
 Identities = 172/264 (66%), Positives = 206/264 (79%), Gaps = 6/264 (2%)

Query  19   AVDLSSFTDFLRRQAPELLPAS---ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDR  75
            A +LSSFT++LR  APE+LP +   ++G  P   GD   PHGTTIVAL + GGVV+AGDR
Sbjct  17   ASNLSSFTEYLRLNAPEMLPGNRIDMNGNGP--DGDVA-PHGTTIVALTFAGGVVIAGDR  73

Query  76   RSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAG  135
            R+T GN+I+ RDV KV++TDDY+A GIAGTA VA+E  RL+AVELEHYEK+EGV LTF G
Sbjct  74   RATMGNLIASRDVEKVFVTDDYSAAGIAGTAGVAIELVRLFAVELEHYEKIEGVQLTFDG  133

Query  136  KINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQA  195
            K NRL+ MVRGNL AAMQGL  +PLL G+D+ A DP+ AGRIVS+D  GG   E  GY A
Sbjct  134  KANRLSSMVRGNLGAAMQGLAVVPLLVGFDLDAPDPERAGRIVSYDVVGGRYEERAGYHA  193

Query  196  VGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID  255
            VGSGSLFAKSS+KKLY +  D DS LR+A+EALYDAADDDSATGGPDLVR I+PTAV I 
Sbjct  194  VGSGSLFAKSSLKKLYREGADEDSALRMAIEALYDAADDDSATGGPDLVRSIYPTAVSIT  253

Query  256  ADGAVDVPESRIAELARAIIESRS  279
            + GAV+VP  R AELAR ++  R+
Sbjct  254  SAGAVNVPAERTAELARTVVAGRT  277


>gi|325676828|ref|ZP_08156501.1| proteasome, beta subunit [Rhodococcus equi ATCC 33707]
 gi|325552376|gb|EGD22065.1| proteasome, beta subunit [Rhodococcus equi ATCC 33707]
Length=284

 Score =  335 bits (858),  Expect = 6e-90, Method: Compositional matrix adjust.
 Identities = 172/264 (66%), Positives = 206/264 (79%), Gaps = 6/264 (2%)

Query  19   AVDLSSFTDFLRRQAPELLPAS---ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDR  75
            A +LSSFT++LR  APE+LP +   ++G  P   GD   PHGTTIVAL + GGVV+AGDR
Sbjct  17   ASNLSSFTEYLRLHAPEMLPGNRIDMNGNGP--DGDVA-PHGTTIVALTFAGGVVIAGDR  73

Query  76   RSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAG  135
            R+T GN+I+ RDV KV++TDDY+A GIAGTA VA+E  RL+AVELEHYEK+EGV LTF G
Sbjct  74   RATMGNLIASRDVEKVFVTDDYSAAGIAGTAGVAIELVRLFAVELEHYEKIEGVQLTFDG  133

Query  136  KINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQA  195
            K NRL+ MVRGNL AAMQGL  +PLL G+D+ A DP+ AGRIVS+D  GG   E  GY A
Sbjct  134  KANRLSSMVRGNLGAAMQGLAVVPLLVGFDLDAPDPERAGRIVSYDVVGGRYEERAGYHA  193

Query  196  VGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID  255
            VGSGSLFAKSS+KKLY +  D DS LR+A+EALYDAADDDSATGGPDLVR I+PTAV I 
Sbjct  194  VGSGSLFAKSSLKKLYREGADEDSALRMAIEALYDAADDDSATGGPDLVRSIYPTAVSIT  253

Query  256  ADGAVDVPESRIAELARAIIESRS  279
            + GAV+VP  R AELAR ++  R+
Sbjct  254  SAGAVNVPAERTAELARTVVAGRT  277


>gi|75491633|sp|Q53079.1|PSB1_RHOER RecName: Full=Proteasome subunit beta 1; AltName: Full=20S proteasome 
beta subunit 1; AltName: Full=Proteasome core protein 
PrcB 1; Flags: Precursor
 gi|847769|gb|AAC45740.1| proteasome beta-type subunit 1 [Rhodococcus erythropolis]
Length=294

 Score =  333 bits (854),  Expect = 2e-89, Method: Compositional matrix adjust.
 Identities = 171/267 (65%), Positives = 201/267 (76%), Gaps = 9/267 (3%)

Query  21   DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA  72
            +LSSFTD+LR  APELLP         S  GG  +  GD   PHGTTIVAL Y GGV++A
Sbjct  22   NLSSFTDYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA  80

Query  73   GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT  132
            GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLT
Sbjct  81   GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT  140

Query  133  FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG  192
            F GK NRLA MVRGNL AAMQGL  +PLL GYD+ A D   AGRIVS+D  GG   E  G
Sbjct  141  FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG  200

Query  193  YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV  252
            Y AVGSGSLFAKS++KK+YS  +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct  201  YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV  260

Query  253  IIDADGAVDVPESRIAELARAIIESRS  279
             I   GAV V E   +ELAR I+  R+
Sbjct  261  TITQAGAVHVSEETTSELARRIVAERT  287


>gi|40889405|pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
 gi|40889406|pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
 gi|40889407|pdb|1Q5R|J Chain J, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
 gi|40889408|pdb|1Q5R|K Chain K, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
 gi|40889409|pdb|1Q5R|L Chain L, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
 gi|40889410|pdb|1Q5R|M Chain M, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
 gi|40889411|pdb|1Q5R|N Chain N, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
Length=294

 Score =  330 bits (847),  Expect = 1e-88, Method: Compositional matrix adjust.
 Identities = 170/267 (64%), Positives = 200/267 (75%), Gaps = 9/267 (3%)

Query  21   DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA  72
            +LSSFTD+LR  APELLP         S  GG  +  GD   PHGTTIVAL Y GGV++A
Sbjct  22   NLSSFTDYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA  80

Query  73   GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT  132
            GDRR+TQGN+I+ RDV  VY+TD+Y+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLT
Sbjct  81   GDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT  140

Query  133  FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG  192
            F GK NRLA MVRGNL AAMQGL  +PLL GYD+ A D   AGRIVS+D  GG   E  G
Sbjct  141  FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG  200

Query  193  YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV  252
            Y AVGSGSLFAKS++KK+YS  +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct  201  YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV  260

Query  253  IIDADGAVDVPESRIAELARAIIESRS  279
             I   GAV V E   +ELAR I+  R+
Sbjct  261  TITQAGAVHVSEETTSELARRIVAERT  287


>gi|226359996|ref|YP_002777774.1| 20S proteasome beta-type subunit [Rhodococcus opacus B4]
 gi|302595781|sp|C1ASP7.1|PSB_RHOOB RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|226238481|dbj|BAH48829.1| 20S proteasome beta-type subunit [Rhodococcus opacus B4]
Length=294

 Score =  330 bits (845),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 169/267 (64%), Positives = 201/267 (76%), Gaps = 9/267 (3%)

Query  21   DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA  72
            +LSSFT++LR  APELLP         S  GG  +  GD   PHGTTIVAL Y GGV++A
Sbjct  22   NLSSFTEYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA  80

Query  73   GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT  132
            GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLT
Sbjct  81   GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT  140

Query  133  FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG  192
            F GK NRLA MVRGNL AAMQGL  +PLL GYD+ A +   AGRIVS+D  GG   E  G
Sbjct  141  FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADEEARAGRIVSYDVVGGRYEERAG  200

Query  193  YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV  252
            Y AVGSGSLFAKS++KK+YS  +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct  201  YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV  260

Query  253  IIDADGAVDVPESRIAELARAIIESRS  279
             I   GAV V E   +ELAR I+  R+
Sbjct  261  TITQAGAVHVSEETTSELARRIVAERT  287


>gi|112491166|pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
 gi|112491167|pdb|2H6J|I Chain I, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
 gi|112491168|pdb|2H6J|J Chain J, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
 gi|112491169|pdb|2H6J|K Chain K, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
 gi|112491170|pdb|2H6J|L Chain L, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
 gi|112491171|pdb|2H6J|M Chain M, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
 gi|112491172|pdb|2H6J|N Chain N, Crystal Structure Of The Beta F145a Rhodococcus Proteasome 
(Casp Target)
Length=294

 Score =  329 bits (844),  Expect = 2e-88, Method: Compositional matrix adjust.
 Identities = 170/267 (64%), Positives = 200/267 (75%), Gaps = 9/267 (3%)

Query  21   DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA  72
            +LSSFTD+LR  APELLP         S  GG  +  GD   PHGTTIVAL Y GGV++A
Sbjct  22   NLSSFTDYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA  80

Query  73   GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT  132
            GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLT
Sbjct  81   GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT  140

Query  133  FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG  192
            F GK NRLA MVRGNL AAMQGL  +PLL GYD+ A D   AGRIVS+D  GG   E  G
Sbjct  141  FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG  200

Query  193  YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV  252
            Y AVGSGSL AKS++KK+YS  +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct  201  YHAVGSGSLAAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV  260

Query  253  IIDADGAVDVPESRIAELARAIIESRS  279
             I   GAV V E   +ELAR I+  R+
Sbjct  261  TITQAGAVHVSEETTSELARRIVAERT  287


>gi|302595915|sp|Q0SIF9.2|PSB_RHOSR RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
Length=294

 Score =  329 bits (843),  Expect = 4e-88, Method: Compositional matrix adjust.
 Identities = 169/267 (64%), Positives = 200/267 (75%), Gaps = 9/267 (3%)

Query  21   DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA  72
            +LSSFT++LR  APELLP         S  GG  +  GD   PHGTTIVAL Y GGV++A
Sbjct  22   NLSSFTEYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA  80

Query  73   GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT  132
            GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E  RL+AVELEHYEK+EGV LT
Sbjct  81   GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVQLT  140

Query  133  FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG  192
            F GK NRLA MVRGNL AAMQGL  +PLL GYD+ A D   AGRIVS+D  GG   E  G
Sbjct  141  FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDEAHAGRIVSYDVVGGRYEERAG  200

Query  193  YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV  252
            Y AVGSGSLFAKS++KK+YS  +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct  201  YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV  260

Query  253  IIDADGAVDVPESRIAELARAIIESRS  279
             I   GAV V E   +ELAR I+  R+
Sbjct  261  TITQAGAVHVSEETTSELARRIVAERT  287


>gi|229493495|ref|ZP_04387280.1| proteasome, beta subunit [Rhodococcus erythropolis SK121]
 gi|229319456|gb|EEN85292.1| proteasome, beta subunit [Rhodococcus erythropolis SK121]
Length=277

 Score =  327 bits (837),  Expect = 2e-87, Method: Compositional matrix adjust.
 Identities = 168/261 (65%), Positives = 204/261 (79%), Gaps = 2/261 (0%)

Query  21   DLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRST  78
            +LSSF+++LR  APE LP +     G  + GG    PHGTTIVA+ Y GGV++AGDRR+T
Sbjct  6    NLSSFSEYLRVHAPEHLPQNRFADTGGVVMGGGDVAPHGTTIVAISYAGGVLLAGDRRAT  65

Query  79   QGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKIN  138
             GN+I+ RDV+KVY+TDDY+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLTF GK N
Sbjct  66   MGNLIASRDVQKVYVTDDYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKAN  125

Query  139  RLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGS  198
            RL+ MVRGNL AAMQGL  +PLL GYD+ A DP +AGRIVS+D  GG   E  GY AVGS
Sbjct  126  RLSSMVRGNLGAAMQGLAVVPLLVGYDLDAVDPSTAGRIVSYDVVGGRYEERAGYHAVGS  185

Query  199  GSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG  258
            GSLFAKS++KKLYS   D D+ LR AVEALYDAADDDSATGGPDL RGI+PTAV I + G
Sbjct  186  GSLFAKSALKKLYSPGIDEDTALRFAVEALYDAADDDSATGGPDLTRGIYPTAVTITSAG  245

Query  259  AVDVPESRIAELARAIIESRS  279
            AV++  +R AE+AR I+ +R+
Sbjct  246  AVELLPTRAAEIAREIVAART  266


>gi|226306661|ref|YP_002766621.1| 20S proteasome beta-type subunit [Rhodococcus erythropolis PR4]
 gi|75491637|sp|Q53083.1|PSB2_RHOER RecName: Full=Proteasome subunit beta 2; AltName: Full=20S proteasome 
beta subunit 2; AltName: Full=Proteasome core protein 
PrcB 2; Flags: Precursor
 gi|302595780|sp|C0ZZU7.1|PSB_RHOE4 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|847774|gb|AAC45736.1| proteasome beta-type subunit 2 [Rhodococcus erythropolis]
 gi|226185778|dbj|BAH33882.1| 20S proteasome beta-type subunit [Rhodococcus erythropolis PR4]
Length=292

 Score =  325 bits (834),  Expect = 4e-87, Method: Compositional matrix adjust.
 Identities = 167/261 (64%), Positives = 203/261 (78%), Gaps = 2/261 (0%)

Query  21   DLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRST  78
            +LSSF+++LR  APE LP +     G  + GG    PHGTTIVA+ Y GGV++AGDRR+T
Sbjct  21   NLSSFSEYLRVHAPEHLPQNRFADTGGVVMGGGDVAPHGTTIVAISYAGGVLLAGDRRAT  80

Query  79   QGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKIN  138
             GN+I+ RDV+KVY+TDDY+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLTF GK N
Sbjct  81   MGNLIASRDVQKVYVTDDYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKAN  140

Query  139  RLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGS  198
            RL+ MVRGNL AAMQGL  +PLL GYD+ A DP  AGRIVS+D  GG   E  GY AVGS
Sbjct  141  RLSSMVRGNLGAAMQGLAVVPLLVGYDLDAVDPSRAGRIVSYDVVGGRYEERAGYHAVGS  200

Query  199  GSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG  258
            GSLFAKS++KKLYS   D D+ LR AVEALYDAADDDSATGGPDL RGI+PTAV I + G
Sbjct  201  GSLFAKSALKKLYSPGIDEDTALRFAVEALYDAADDDSATGGPDLTRGIYPTAVTITSAG  260

Query  259  AVDVPESRIAELARAIIESRS  279
            AV++  ++ AE+AR I+ +R+
Sbjct  261  AVELSTAKAAEIAREIVAART  281


>gi|343927937|ref|ZP_08767403.1| 20S proteasome beta-type subunit [Gordonia alkanivorans NBRC 
16433]
 gi|343762160|dbj|GAA14329.1| 20S proteasome beta-type subunit [Gordonia alkanivorans NBRC 
16433]
Length=293

 Score =  323 bits (827),  Expect = 3e-86, Method: Compositional matrix adjust.
 Identities = 166/266 (63%), Positives = 200/266 (76%), Gaps = 10/266 (3%)

Query  21   DLSSFTDFLRRQAPELLP-------ASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAG  73
            D+SSFT+FLR  APE LP        S +GGA  AG    +PHGTTIVA+ YPGGVV+AG
Sbjct  23   DISSFTEFLRLHAPEQLPQAQVDRVGSFAGGADGAG---DIPHGTTIVAVSYPGGVVLAG  79

Query  74   DRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF  133
            DRR+T GN+I+ RDV+KVYITD+Y+A GIAGTA +A+E  RL+AVELEHYEK+EGVPLT 
Sbjct  80   DRRATMGNLIATRDVKKVYITDEYSAAGIAGTAGIAIEMVRLFAVELEHYEKIEGVPLTL  139

Query  134  AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGY  193
             GK++RLA MVRGNL AA+QGL A+PLL GYDI   DP   GRI SFD AG  + E  GY
Sbjct  140  DGKVSRLASMVRGNLGAALQGLAAIPLLVGYDIDHDDPTERGRIFSFDVAGDRHEEFGGY  199

Query  194  QAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVI  253
             A+GSGS+FAKSS+KKLY      D  + +AVE+LYDAADDDSATGGPDLVR IFP A +
Sbjct  200  TAIGSGSVFAKSSLKKLYRSDLTADEAIAIAVESLYDAADDDSATGGPDLVRKIFPMAAV  259

Query  254  IDADGAVDVPESRIAELARAIIESRS  279
            +DA GA +V  + I   ARA++E R+
Sbjct  260  VDAQGAREVDAAEIESAARAVVERRA  285


>gi|262202389|ref|YP_003273597.1| 20S proteasome A and subunit Bs [Gordonia bronchialis DSM 43247]
 gi|302595826|sp|D0LDT1.1|PSB_GORB4 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|262085736|gb|ACY21704.1| 20S proteasome A and B subunits [Gordonia bronchialis DSM 43247]
Length=292

 Score =  322 bits (826),  Expect = 4e-86, Method: Compositional matrix adjust.
 Identities = 163/259 (63%), Positives = 197/259 (77%), Gaps = 0/259 (0%)

Query  21   DLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQG  80
            D+SSFT++LR  AP+ LP + +    L      +PHGTTIVA+ YPGGV++AGDRR+T G
Sbjct  26   DISSFTEYLRAHAPDQLPQARAEAMGLHRAADDIPHGTTIVAVSYPGGVILAGDRRATMG  85

Query  81   NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL  140
            N+I+ RDV+KVYITD+Y+A GIAGTA +A+E  RL+AVELEHYEKLEGVPLT  GK++RL
Sbjct  86   NLIATRDVKKVYITDEYSAAGIAGTAGIAIEMVRLFAVELEHYEKLEGVPLTLDGKVSRL  145

Query  141  AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS  200
            A MVRGNL AA+QGL A+PLL GYDI   DP   GRI SFD AG  + E  GYQA+GSGS
Sbjct  146  ASMVRGNLGAALQGLAAVPLLVGYDIDHDDPTERGRIFSFDVAGDRHEEFGGYQAIGSGS  205

Query  201  LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV  260
            +FAKSS+KKLY    D  S L +AVEALYDAADDDSATGGPD+VR IFP A ++DA GA 
Sbjct  206  VFAKSSLKKLYRHDLDEASALAIAVEALYDAADDDSATGGPDIVRKIFPLAAVVDAGGAR  265

Query  261  DVPESRIAELARAIIESRS  279
            +V    I   ARAI+E R+
Sbjct  266  EVDAESIEAAARAIVERRA  284


>gi|333919677|ref|YP_004493258.1| proteasome [Amycolicicoccus subflavus DQS3-9A1]
 gi|333481898|gb|AEF40458.1| Proteasome [Amycolicicoccus subflavus DQS3-9A1]
Length=290

 Score =  322 bits (824),  Expect = 6e-86, Method: Compositional matrix adjust.
 Identities = 167/268 (63%), Positives = 200/268 (75%), Gaps = 4/268 (1%)

Query  22   LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN  81
            LSSFTD+LR+ APELLP +  G   ++   A  PHGTTI AL + GGVVMAGDRR+T GN
Sbjct  23   LSSFTDYLRQNAPELLPGNRPGALQVSSDVA--PHGTTITALTFEGGVVMAGDRRATMGN  80

Query  82   MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA  141
            +I+ RD+ KV+ITD+Y+A GIAGTA VAVE  RL+AVELEHYEKLEGV LT  GK NRLA
Sbjct  81   LIASRDIEKVFITDEYSAVGIAGTAGVAVELVRLFAVELEHYEKLEGVSLTLDGKANRLA  140

Query  142  IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL  201
             MVRGNL AA+QGL  +PL AGY+I A +P+  GRIVSFD  GG   E  GY AVGSGSL
Sbjct  141  SMVRGNLGAALQGLAVIPLFAGYEIDAPEPERGGRIVSFDVTGGRYEEHTGYFAVGSGSL  200

Query  202  FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD  261
            FA+S++KKLY +       +R AVEALYDA+DDD+ATGGPD+VRG+FPT V+I ADGA  
Sbjct  201  FARSALKKLYRRGLGQQDAVRCAVEALYDASDDDTATGGPDMVRGLFPTVVVITADGAER  260

Query  262  VPESRIAELARAIIESRSGADTFGSDGG  289
            VPE  + ++AR II  R   +T   DGG
Sbjct  261  VPEEAVGDIARTIIAERD--ETTSPDGG  286


>gi|54025141|ref|YP_119383.1| putative proteasome subunit beta [Nocardia farcinica IFM 10152]
 gi|81374566|sp|Q5YUX2.1|PSB_NOCFA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|54016649|dbj|BAD58019.1| putative proteasome beta subunit [Nocardia farcinica IFM 10152]
Length=288

 Score =  313 bits (803),  Expect = 2e-83, Method: Compositional matrix adjust.
 Identities = 163/276 (60%), Positives = 204/276 (74%), Gaps = 17/276 (6%)

Query  18   PAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQL------------PHGTTIVALKY  65
            P   LSSFT+ LR  APELL     G    A  D               PHGTTIVA+ Y
Sbjct  11   PGHALSSFTEHLRALAPELL-----GPNRFAALDGATGSSGGTGAKDIAPHGTTIVAVSY  65

Query  66   PGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEK  125
             GGV++AGDRR+TQGN+++ RD+ KVYITD ++A GIAGTA +AVE  RL+AVELEHYEK
Sbjct  66   RGGVLIAGDRRATQGNLLASRDMDKVYITDTFSAAGIAGTAGMAVELVRLFAVELEHYEK  125

Query  126  LEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGG  185
            +EGVPLTF GK N+L+ MVR NL AA+QGL  +P+L GYD  A DP  AGRIVS+D  GG
Sbjct  126  IEGVPLTFDGKANKLSKMVRDNLPAALQGLAVVPVLVGYDERAGDPDRAGRIVSYDVVGG  185

Query  186  WNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVR  245
             + E  GY AVGSGS+FAK+S+KKLY++  D    LR+A+E+LYDA+DDD+ATGGPDL+R
Sbjct  186  RSEERFGYTAVGSGSMFAKTSLKKLYAKGIDQARALRIALESLYDASDDDTATGGPDLLR  245

Query  246  GIFPTAVIIDADGAVDVPESRIAELARAIIESRSGA  281
            GI+PTAV+IDA+GA++VPESR+ E+AR I+  R+ A
Sbjct  246  GIYPTAVVIDAEGALEVPESRLEEIARGIVADRTAA  281


>gi|111017863|ref|YP_700835.1| proteasome beta subunit [Rhodococcus jostii RHA1]
 gi|110817393|gb|ABG92677.1| proteasome beta subunit [Rhodococcus jostii RHA1]
Length=239

 Score =  307 bits (786),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 151/225 (68%), Positives = 178/225 (80%), Gaps = 0/225 (0%)

Query  55   PHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFAR  114
            PHGTTIVAL Y GGV++AGDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E  R
Sbjct  8    PHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVR  67

Query  115  LYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSA  174
            L+AVELEHYEK+EGV LTF GK NRLA MVRGNL AAMQGL  +PLL GYD+ A D   A
Sbjct  68   LFAVELEHYEKIEGVQLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDEAHA  127

Query  175  GRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADD  234
            GRIVS+D  GG   E  GY AVGSGSLFAKS++KK+YS  +D ++ LR A+E+LYDAADD
Sbjct  128  GRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADD  187

Query  235  DSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRS  279
            DSATGGPDL RGI+PTAV I   GAV V E   +ELAR I+  R+
Sbjct  188  DSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERT  232


>gi|256376367|ref|YP_003100027.1| 20S proteasome subunits A and B [Actinosynnema mirum DSM 43827]
 gi|302595817|sp|C6WID8.1|PSB_ACTMD RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|255920670|gb|ACU36181.1| 20S proteasome A and B subunits [Actinosynnema mirum DSM 43827]
Length=282

 Score =  306 bits (783),  Expect = 3e-81, Method: Compositional matrix adjust.
 Identities = 156/256 (61%), Positives = 190/256 (75%), Gaps = 3/256 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM  82
            SSFTDFLR QAPELLP + S      G   Q  HGTTIVAL + GGVV+AGDRR+T GN+
Sbjct  24   SSFTDFLRAQAPELLPTARSFPE---GSVVQAAHGTTIVALTFKGGVVIAGDRRATMGNV  80

Query  83   ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI  142
            I+ RD++KV++TDDY+A GIAGTA +A+E  RL+AVEL HYEK+EGV L+  GK NRL+ 
Sbjct  81   IAQRDMKKVFVTDDYSAVGIAGTAGIAIEIVRLFAVELRHYEKIEGVSLSLDGKANRLSG  140

Query  143  MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF  202
            MV+GNL AA+ GL  +PL  GYD  A+DP  AGRIVS+D  G    E  GYQ+VGSGSLF
Sbjct  141  MVKGNLDAALAGLAVVPLFVGYDTDAADPDRAGRIVSYDVTGARFEETLGYQSVGSGSLF  200

Query  203  AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV  262
            AKS++KKLY    D +  +R AVEALYDAADDDSATGGPDLVR IFP  V + A+GAV +
Sbjct  201  AKSALKKLYDPDADAEGAVRAAVEALYDAADDDSATGGPDLVRRIFPVVVTVTAEGAVHL  260

Query  263  PESRIAELARAIIESR  278
            PE R + +A  ++E R
Sbjct  261  PEERTSAIAETVVEGR  276


>gi|134098820|ref|YP_001104481.1| 20S proteasome beta-subunit precursor [Saccharopolyspora erythraea 
NRRL 2338]
 gi|302595782|sp|A4FBY1.1|PSB_SACEN RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|133911443|emb|CAM01556.1| 20S proteasome beta-subunit precursor [Saccharopolyspora erythraea 
NRRL 2338]
Length=284

 Score =  302 bits (774),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 155/257 (61%), Positives = 189/257 (74%), Gaps = 5/257 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM  82
            SSFTDFLR  APEL+P    G  P+  G  + PHGTTIVAL + GGV++AGDRR+T GN+
Sbjct  26   SSFTDFLRVAAPELMP----GSRPVPDGAVEAPHGTTIVALTFRGGVLLAGDRRATMGNL  81

Query  83   ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI  142
            I+ RD+ K+Y+TDDY+A GIAGTA +A+E  RLYA+ELEHYEKLEGV L+  GK N+LA 
Sbjct  82   IAQRDMEKLYVTDDYSAVGIAGTAGIALEMVRLYAIELEHYEKLEGVSLSLDGKANKLAT  141

Query  143  MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF  202
            M+RGNL  AM GL  LPL AG+D+ A DP  AGRIVS+D  GG   E  GY AVGSGSLF
Sbjct  142  MLRGNLQGAMAGLAVLPLFAGFDVDADDPDRAGRIVSYDITGGRYNELGGYYAVGSGSLF  201

Query  203  AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID-ADGAVD  261
            AKS++KK +    D D+ +R AVEALYDAADDD+ATGGPDL R I+P+ + I   DGA  
Sbjct  202  AKSALKKRFDPDADVDTAVRAAVEALYDAADDDTATGGPDLSRRIYPSIITITGTDGATR  261

Query  262  VPESRIAELARAIIESR  278
            VPE R AE+A  ++  R
Sbjct  262  VPEERAAEIATEVVNGR  278


>gi|291005825|ref|ZP_06563798.1| proteasome subunit beta [Saccharopolyspora erythraea NRRL 2338]
Length=281

 Score =  302 bits (773),  Expect = 4e-80, Method: Compositional matrix adjust.
 Identities = 155/257 (61%), Positives = 189/257 (74%), Gaps = 5/257 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM  82
            SSFTDFLR  APEL+P    G  P+  G  + PHGTTIVAL + GGV++AGDRR+T GN+
Sbjct  23   SSFTDFLRVAAPELMP----GSRPVPDGAVEAPHGTTIVALTFRGGVLLAGDRRATMGNL  78

Query  83   ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI  142
            I+ RD+ K+Y+TDDY+A GIAGTA +A+E  RLYA+ELEHYEKLEGV L+  GK N+LA 
Sbjct  79   IAQRDMEKLYVTDDYSAVGIAGTAGIALEMVRLYAIELEHYEKLEGVSLSLDGKANKLAT  138

Query  143  MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF  202
            M+RGNL  AM GL  LPL AG+D+ A DP  AGRIVS+D  GG   E  GY AVGSGSLF
Sbjct  139  MLRGNLQGAMAGLAVLPLFAGFDVDADDPDRAGRIVSYDITGGRYNELGGYYAVGSGSLF  198

Query  203  AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID-ADGAVD  261
            AKS++KK +    D D+ +R AVEALYDAADDD+ATGGPDL R I+P+ + I   DGA  
Sbjct  199  AKSALKKRFDPDADVDTAVRAAVEALYDAADDDTATGGPDLSRRIYPSIITITGTDGATR  258

Query  262  VPESRIAELARAIIESR  278
            VPE R AE+A  ++  R
Sbjct  259  VPEERAAEIATEVVNGR  275


>gi|40889391|pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome
 gi|40889392|pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome
 gi|40889393|pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome
 gi|40889394|pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome
 gi|40889395|pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome
 gi|40889396|pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome
 gi|40889397|pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome
Length=235

 Score =  301 bits (771),  Expect = 7e-80, Method: Compositional matrix adjust.
 Identities = 149/222 (68%), Positives = 176/222 (80%), Gaps = 0/222 (0%)

Query  58   TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA  117
            TTIVAL Y GGV++AGDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E  RL+A
Sbjct  1    TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA  60

Query  118  VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI  177
            VELEHYEK+EGVPLTF GK NRLA MVRGNL AAMQGL  +PLL GYD+ A D   AGRI
Sbjct  61   VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI  120

Query  178  VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA  237
            VS+D  GG   E  GY AVGSGSLFAKS++KK+YS  +D ++ LR A+E+LYDAADDDSA
Sbjct  121  VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA  180

Query  238  TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRS  279
            TGGPDL RGI+PTAV I   GAV V E   +ELAR I+  R+
Sbjct  181  TGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERT  222


>gi|257056206|ref|YP_003134038.1| proteasome endopeptidase complex, beta component [Saccharomonospora 
viridis DSM 43017]
 gi|302595783|sp|C7MWV7.1|PSB_SACVD RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|256586078|gb|ACU97211.1| proteasome endopeptidase complex, beta component [Saccharomonospora 
viridis DSM 43017]
Length=289

 Score =  292 bits (748),  Expect = 4e-77, Method: Compositional matrix adjust.
 Identities = 151/261 (58%), Positives = 189/261 (73%), Gaps = 4/261 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLA--GGDA-QLPHGTTIVALKYPGGVVMAGDRRSTQ  79
            SSF DFL+ +AP+LLP +     P    GG A + PHGTTIVA  + GGV++AGDRR+T 
Sbjct  22   SSFIDFLKAEAPDLLPRARVENMPAVPGGGSAFEPPHGTTIVASTFNGGVLIAGDRRATT  81

Query  80   GNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINR  139
            GN I+ RD+ KVY+TD Y+A GIAGTA +A+E  RLY VEL HYEK+EGV L+  GK N+
Sbjct  82   GNTIASRDLEKVYVTDAYSAVGIAGTAGIALELVRLYTVELAHYEKIEGVSLSLDGKANK  141

Query  140  LAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG  199
            LA MV+GNL  A+ GL  LPL  GYDI A DP+ AGRIVSFD  GG   E  GY A+GSG
Sbjct  142  LANMVKGNLDGALAGLAVLPLFVGYDIDADDPKRAGRIVSFDVTGGRYEENAGYHAIGSG  201

Query  200  SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD-G  258
            +++AKSS+KKLY    D D+ +R A+EALYDAADDD+ATGGPDLVR I+PT V I A+ G
Sbjct  202  AVYAKSSLKKLYDPEADADTAVRTAIEALYDAADDDTATGGPDLVRRIYPTVVTITAEHG  261

Query  259  AVDVPESRIAELARAIIESRS  279
            AV +P+   A +A +++  RS
Sbjct  262  AVMLPQEETASIAESVVRERS  282


>gi|302527206|ref|ZP_07279548.1| proteasome endopeptidase complex beta subunit [Streptomyces sp. 
AA4]
 gi|302436101|gb|EFL07917.1| proteasome endopeptidase complex beta subunit [Streptomyces sp. 
AA4]
Length=287

 Score =  290 bits (741),  Expect = 2e-76, Method: Compositional matrix adjust.
 Identities = 151/258 (59%), Positives = 187/258 (73%), Gaps = 4/258 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM  82
            SSF DF+R  APELLPA      P    +   PHGTTIVA+ + GGV++AGDRR+T GN+
Sbjct  25   SSFADFVRATAPELLPAR---RVPAGAAELDAPHGTTIVAVAFAGGVLIAGDRRATSGNL  81

Query  83   ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI  142
            I+ RD+ KV++TD+Y+A GIAGTA +AVE  RLYAVEL HYEK+EGV L+  GK N+LA 
Sbjct  82   IASRDIEKVHVTDEYSAVGIAGTAGLAVEMVRLYAVELAHYEKIEGVSLSLDGKTNKLAG  141

Query  143  MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF  202
            MV+ NL  AM GL  +PL  GYD+ A D + AGRIVS+DAAGG   E  GY +VGSGSLF
Sbjct  142  MVKANLEMAMAGLAVVPLFVGYDLEAEDAKHAGRIVSYDAAGGRYEEHAGYASVGSGSLF  201

Query  203  AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA-DGAVD  261
            AKSS+KKLY    D D+ +R A+EALYDAADDD+A+GGPDLVR IFP  + I A DGAV 
Sbjct  202  AKSSLKKLYDPDADADAAVRTALEALYDAADDDTASGGPDLVRRIFPNVITITAEDGAVV  261

Query  262  VPESRIAELARAIIESRS  279
            +P  R   +A A++  R+
Sbjct  262  LPAERTGAVAEAVVAGRA  279


>gi|296394010|ref|YP_003658894.1| 20S proteasome subunits AB [Segniliparus rotundus DSM 44985]
 gi|296181157|gb|ADG98063.1| 20S proteasome A and B subunits [Segniliparus rotundus DSM 44985]
Length=275

 Score =  288 bits (738),  Expect = 5e-76, Method: Compositional matrix adjust.
 Identities = 150/257 (59%), Positives = 187/257 (73%), Gaps = 3/257 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGAPL-AGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN  81
            SSFT+ LR  AP+LLP        L   G   LPH TTIVAL Y GGV++AGDRR+T GN
Sbjct  17   SSFTEHLRASAPQLLPYRQETAMELPVSGTGSLPHATTIVALTYAGGVLIAGDRRATSGN  76

Query  82   MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA  141
            +IS  +++KVY+TD+Y+A GIAGT A+A E  RL+ VELEHYEK+EGV LTF+GK NRLA
Sbjct  77   LISHDEMQKVYLTDEYSAAGIAGTVAIAFELVRLFTVELEHYEKVEGVALTFSGKANRLA  136

Query  142  IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL  201
             MVRGNL AAMQGL A+PLL G D    DP+  GRIVS+DAAGG   E  GY  +GSG L
Sbjct  137  AMVRGNLDAAMQGLAAVPLLIGLD--PQDPEPKGRIVSYDAAGGRFEESSGYHCIGSGGL  194

Query  202  FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD  261
            FA+S++K+L+    D  + LR AVEAL DA + DSAT GP+ V+ I+PTA+ I+A G  +
Sbjct  195  FARSTLKRLHDPDADRATALRSAVEALADAGEADSATAGPNFVKRIWPTAIRIEASGGEE  254

Query  262  VPESRIAELARAIIESR  278
            VPES IAE+A A++E+R
Sbjct  255  VPESEIAEVAEAVLEAR  271


>gi|317507302|ref|ZP_07965044.1| proteasome A-type and B-type [Segniliparus rugosus ATCC BAA-974]
 gi|316254405|gb|EFV13733.1| proteasome A-type and B-type [Segniliparus rugosus ATCC BAA-974]
Length=279

 Score =  288 bits (737),  Expect = 7e-76, Method: Compositional matrix adjust.
 Identities = 149/258 (58%), Positives = 194/258 (76%), Gaps = 5/258 (1%)

Query  23   SSFTDFLRRQAPELLPASISGGA--PLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQG  80
            SSFT+ LR  AP LLP         P+AG  + LPHGTTIVAL Y GGV++AGDRR+T G
Sbjct  21   SSFTEHLRANAPHLLPFREDRAVEFPVAGAGS-LPHGTTIVALTYAGGVLIAGDRRATSG  79

Query  81   NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL  140
            N+IS  +++KVY+TD+Y+A GIAGT A+A E  RL+AVELEHYEK+EGV LTF+GK NRL
Sbjct  80   NLISHDEMQKVYLTDEYSAAGIAGTVAIAFELVRLFAVELEHYEKVEGVALTFSGKANRL  139

Query  141  AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS  200
            A MVRGNL AAMQGL A+PLL G D   ++P+  GRIVS+DAAGG   E+ GY ++GSG 
Sbjct  140  AAMVRGNLEAAMQGLAAVPLLVGLDPDDAEPK--GRIVSYDAAGGRFEEQSGYHSIGSGG  197

Query  201  LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV  260
            LFA+S++K+L+    D  + LR AVEAL DA ++DSAT GP+ V+ ++PTA+ I+A G  
Sbjct  198  LFARSTLKRLHDPQADRTAALRAAVEALADAGEEDSATAGPNFVKRVWPTAIRIEASGGE  257

Query  261  DVPESRIAELARAIIESR  278
            +VPE+ I E+A A++E+R
Sbjct  258  EVPEAEIGEVAEAVLEAR  275


>gi|300786771|ref|YP_003767062.1| proteasome beta subunit [Amycolatopsis mediterranei U32]
 gi|299796285|gb|ADJ46660.1| proteasome beta subunit [Amycolatopsis mediterranei U32]
 gi|340528255|gb|AEK43460.1| proteasome subunit beta [Amycolatopsis mediterranei S699]
Length=284

 Score =  286 bits (731),  Expect = 3e-75, Method: Compositional matrix adjust.
 Identities = 150/245 (62%), Positives = 184/245 (76%), Gaps = 6/245 (2%)

Query  23   SSFTDFLRRQAPELLPAS-ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN  81
            SSF+DFLR QAPELLP   +S GA   G    +PHGTTIVA  +  GV++AGDRR+T GN
Sbjct  22   SSFSDFLRVQAPELLPERRVSPGAAELG----IPHGTTIVACTFASGVLIAGDRRATSGN  77

Query  82   MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA  141
            +I+ RD+ KV++TD+Y+A GIAGTA +AVE  RLYAVEL HYEK+EGV L+  GK N+LA
Sbjct  78   LIASRDIEKVHVTDEYSAVGIAGTAGLAVEMVRLYAVELAHYEKIEGVSLSLDGKTNKLA  137

Query  142  IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL  201
             MV+ NL  AM GL A+PL  GYD+ A D + AGRIVS+DAAGG   E  GY  +GSGSL
Sbjct  138  GMVKANLEMAMAGLAAIPLFVGYDLEAEDAKHAGRIVSYDAAGGRYEENGGYAGIGSGSL  197

Query  202  FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD-GAV  260
            FAKS++KKL+    D +  +RVAVEALYDAADDD+A+GGPDLVR IFP+ V I A+ GAV
Sbjct  198  FAKSALKKLHDPDADVEGAVRVAVEALYDAADDDTASGGPDLVRRIFPSVVTITAERGAV  257

Query  261  DVPES  265
             + ES
Sbjct  258  QLSES  262


>gi|326382282|ref|ZP_08203974.1| 20S proteasome A and subunit Bs [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326199012|gb|EGD56194.1| 20S proteasome A and subunit Bs [Gordonia neofelifaecis NRRL 
B-59395]
Length=285

 Score =  283 bits (724),  Expect = 2e-74, Method: Compositional matrix adjust.
 Identities = 160/265 (61%), Positives = 194/265 (74%), Gaps = 6/265 (2%)

Query  22   LSSFTDFLRRQAPELLPASISGGAPLAGGDA-QLPHGTTIVALKYPGGVVMAGDRRSTQG  80
            +SSFT++LR  AP+ LP +++    +A G   Q+PHGTTIVA+ YPGGV++AGDRR+T G
Sbjct  18   ISSFTEYLRVHAPDRLPQNMT----VANGSVEQIPHGTTIVAVGYPGGVILAGDRRATMG  73

Query  81   NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL  140
            N+I+ RDV+KVY+TD++TA GIAGTA +A+E  RL+AVELEHYEK+EGVPLT  GK+ RL
Sbjct  74   NLIATRDVQKVYVTDEFTAAGIAGTAGIAIEMVRLFAVELEHYEKIEGVPLTLDGKVARL  133

Query  141  AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS  200
            A MVR NL AAMQGL A+PLL G+D    DP   GRI SFD AG  + E  GY A+GSGS
Sbjct  134  ATMVRSNLGAAMQGLAAVPLLVGFDAEG-DPDDRGRIFSFDVAGSRHEETAGYDAIGSGS  192

Query  201  LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV  260
            +FAKSS+KKLY         L  AVEALYDAADDDSATGGPDLVR IFPTA  + ADGA 
Sbjct  193  VFAKSSLKKLYRGDLTAAEALATAVEALYDAADDDSATGGPDLVRRIFPTAARVTADGAD  252

Query  261  DVPESRIAELARAIIESRSGADTFG  285
             V ES I   A +++  R  A T G
Sbjct  253  MVAESEIEAAAESVVARRRDAATSG  277


>gi|324999221|ref|ZP_08120333.1| proteasome subunit beta [Pseudonocardia sp. P1]
Length=298

 Score =  278 bits (710),  Expect = 8e-73, Method: Compositional matrix adjust.
 Identities = 145/262 (56%), Positives = 184/262 (71%), Gaps = 6/262 (2%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLA--GGDAQ----LPHGTTIVALKYPGGVVMAGDRR  76
             SF++F+   AP L+P +     P++  GG A     +PHGTTIVAL + GGVV+AGDRR
Sbjct  28   QSFSEFVGATAPHLMPGAGVTPQPVSAPGGSAADALGVPHGTTIVALTFSGGVVIAGDRR  87

Query  77   STQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGK  136
            +T GN+I+ RD+ KV++TD ++A GIAG+A +A+E  RL+ V+LEHYEKLEGVPL+  GK
Sbjct  88   ATAGNVIAQRDIEKVFVTDHHSAVGIAGSAGIALEMVRLFGVDLEHYEKLEGVPLSLDGK  147

Query  137  INRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAV  196
             N+LA M+R NL AAMQG + +PL AG+D    DP  AGRIV+FD  GG   E  G+ AV
Sbjct  148  ANKLAGMIRQNLGAAMQGFVVVPLFAGFDPTVDDPGRAGRIVTFDPTGGRYDENLGFHAV  207

Query  197  GSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA  256
            GSGS+FAKSS+KKLY    D D  +R A+EALYDAADDD+ATGGPD VR I+P  V I A
Sbjct  208  GSGSVFAKSSLKKLYDPAADLDGAVRTAIEALYDAADDDTATGGPDTVRRIYPVVVGITA  267

Query  257  DGAVDVPESRIAELARAIIESR  278
            DGA    ES IA +   +I  R
Sbjct  268  DGAARREESEIASVVERVIAGR  289


>gi|117928395|ref|YP_872946.1| proteasome subunit beta [Acidothermus cellulolyticus 11B]
 gi|302595815|sp|A0LU50.1|PSB_ACIC1 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|117648858|gb|ABK52960.1| proteasome endopeptidase complex, beta component [Acidothermus 
cellulolyticus 11B]
Length=290

 Score =  275 bits (703),  Expect = 7e-72, Method: Compositional matrix adjust.
 Identities = 135/257 (53%), Positives = 179/257 (70%), Gaps = 3/257 (1%)

Query  22   LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN  81
            ++SF +FL  QAP+LLP  +    P  G   ++PHGTTIVA+ Y GGVVMAGDRR+T GN
Sbjct  25   ITSFVEFLALQAPDLLPGRLQ--MPAGGQPPEVPHGTTIVAVAYQGGVVMAGDRRATMGN  82

Query  82   MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA  141
            +I+ RD+ KV+ TD+++  GIAG+A +A+E  RL+ VELEHYEKL+G  L+  GK NRLA
Sbjct  83   VIAQRDIEKVFQTDEHSCVGIAGSAGIALEVVRLFQVELEHYEKLQGTTLSLEGKANRLA  142

Query  142  IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL  201
            +M+R NL  A+QGL  +PL AGYD+ A DPQ AGRI SFD  GG   EE  + AVGSGS 
Sbjct  143  MMIRANLPMALQGLAVVPLFAGYDLFADDPQRAGRIFSFDVTGG-RYEEHSFHAVGSGST  201

Query  202  FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD  261
            FA+ ++KKL+    D    +R  +EALYDAADDDSATGGPDL R I+P   ++DA+G   
Sbjct  202  FARGALKKLFRDDFDEPHAVRTCIEALYDAADDDSATGGPDLTRRIYPVVAVVDANGFRR  261

Query  262  VPESRIAELARAIIESR  278
            + +  +  +   +I +R
Sbjct  262  LADDTVGGVVEQVIAAR  278


>gi|291301921|ref|YP_003513199.1| 20S proteasome subunits A/B [Stackebrandtia nassauensis DSM 44728]
 gi|302595786|sp|D3Q557.1|PSB_STANL RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome 
beta subunit; AltName: Full=Proteasome core protein PrcB; 
Flags: Precursor
 gi|290571141|gb|ADD44106.1| 20S proteasome A and B subunits [Stackebrandtia nassauensis DSM 
44728]
Length=279

 Score =  273 bits (697),  Expect = 3e-71, Method: Compositional matrix adjust.
 Identities = 147/258 (57%), Positives = 177/258 (69%), Gaps = 7/258 (2%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDA--QLPHGTTIVALKYPGGVVMAGDRRSTQG  80
            SSF + L   APELLP    G  PL  GD     PHGTTIVAL+   GVVMAGDRR+TQG
Sbjct  21   SSFVELLGSVAPELLP----GRRPLPPGDMGDAAPHGTTIVALRCNEGVVMAGDRRATQG  76

Query  81   NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL  140
            NMIS RD++KV+  D Y+  GIAGTA + VE  RL+  ELEH+EKLEG  L+  GK N+L
Sbjct  77   NMISLRDIQKVFPADAYSLIGIAGTAGLGVEMIRLFQAELEHFEKLEGNALSLHGKANKL  136

Query  141  AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS  200
            A M+RGNL  AMQGL  LPL AG+D  A D  SAGRI S+D  GG   EE  Y A+GSGS
Sbjct  137  ANMIRGNLGIAMQGLAVLPLFAGFDTDAPDAASAGRIFSYDVVGGI-YEEREYDAIGSGS  195

Query  201  LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV  260
            +FAKS++KK +    D     R+A+EALYDAADDDSATGGPDL R +FPT     ADGA 
Sbjct  196  IFAKSALKKRFQSEVDATEATRLAIEALYDAADDDSATGGPDLTRKLFPTVFTATADGAK  255

Query  261  DVPESRIAELARAIIESR  278
             VP++ I  ++RA++ +R
Sbjct  256  RVPDAEIEAVSRAVVAAR  273


>gi|145593571|ref|YP_001157868.1| 20S proteasome subunits A and B [Salinispora tropica CNB-440]
 gi|302595708|sp|A4X3P0.1|PSB1_SALTO RecName: Full=Proteasome subunit beta 1; AltName: Full=20S proteasome 
beta subunit 1; AltName: Full=Proteasome core protein 
PrcB 1; Flags: Precursor
 gi|145302908|gb|ABP53490.1| 20S proteasome, A and B subunits [Salinispora tropica CNB-440]
Length=282

 Score =  271 bits (694),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 138/245 (57%), Positives = 176/245 (72%), Gaps = 5/245 (2%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM  82
            SSF + L+   P LLPA  +     A    + PHGTTIVA  + GGV++AGDRR+T GN+
Sbjct  19   SSFVELLKEYDPTLLPAKRA-----AETFGEAPHGTTIVAATFAGGVLLAGDRRTTMGNL  73

Query  83   ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI  142
            I+GRDV K+ ITDDY+A G AGT  ++++  RL+ VELEHYEK+EGVPL+  GK NRLA 
Sbjct  74   IAGRDVDKLTITDDYSAVGFAGTVGISIDMTRLFVVELEHYEKIEGVPLSLEGKSNRLAA  133

Query  143  MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF  202
            +V+GNL  A  G++++PL  GYD+ ASDP  AGRIVSFDA G    E+ GYQ++GSGS F
Sbjct  134  IVKGNLPMANAGMVSIPLFIGYDLEASDPARAGRIVSFDAIGARYEEKSGYQSIGSGSPF  193

Query  203  AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV  262
            AKSS+KKL+   +D  + L   +EALYDAADDDSATGGPD+VR IFPTA+ I A+GA   
Sbjct  194  AKSSLKKLHDPGSDDAATLSALIEALYDAADDDSATGGPDMVRRIFPTAIRITAEGAYRY  253

Query  263  PESRI  267
             E  +
Sbjct  254  TEEEL  258


>gi|145559628|gb|ABP73653.1| SalI [Salinispora tropica]
Length=278

 Score =  271 bits (694),  Expect = 7e-71, Method: Compositional matrix adjust.
 Identities = 138/245 (57%), Positives = 176/245 (72%), Gaps = 5/245 (2%)

Query  23   SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM  82
            SSF + L+   P LLPA  +     A    + PHGTTIVA  + GGV++AGDRR+T GN+
Sbjct  15   SSFVELLKEYDPTLLPAKRA-----AETFGEAPHGTTIVAATFAGGVLLAGDRRTTMGNL  69

Query  83   ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI  142
            I+GRDV K+ ITDDY+A G AGT  ++++  RL+ VELEHYEK+EGVPL+  GK NRLA 
Sbjct  70   IAGRDVDKLTITDDYSAVGFAGTVGISIDMTRLFVVELEHYEKIEGVPLSLEGKSNRLAA  129

Query  143  MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF  202
            +V+GNL  A  G++++PL  GYD+ ASDP  AGRIVSFDA G    E+ GYQ++GSGS F
Sbjct  130  IVKGNLPMANAGMVSIPLFIGYDLEASDPARAGRIVSFDAIGARYEEKSGYQSIGSGSPF  189

Query  203  AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV  262
            AKSS+KKL+   +D  + L   +EALYDAADDDSATGGPD+VR IFPTA+ I A+GA   
Sbjct  190  AKSSLKKLHDPGSDDAATLSALIEALYDAADDDSATGGPDMVRRIFPTAIRITAEGAYRY  249

Query  263  PESRI  267
             E  +
Sbjct  250  TEEEL  254


>gi|296139866|ref|YP_003647109.1| 20S proteasome subunits A and B [Tsukamurella paurometabola DSM 
20162]
 gi|296028000|gb|ADG78770.1| 20S proteasome A and B subunits [Tsukamurella paurometabola DSM 
20162]
Length=273

 Score =  270 bits (691),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 140/262 (54%), Positives = 187/262 (72%), Gaps = 13/262 (4%)

Query  23   SSFTDFLRRQAPELLPASISG--GAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQG  80
            SSF + L   APE LP  ++G  GAP       +PHGTTIVA+K+ GGV++AGDRR+T G
Sbjct  17   SSFVEHLAAVAPEALPGRVAGFDGAP------DVPHGTTIVAIKFDGGVLIAGDRRATMG  70

Query  81   NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL  140
            ++I+ RD+ K ++TDD TA GIAGTA +A +  +L+ VELEHYEK+EGVPLTF GK NRL
Sbjct  71   HLIAQRDITKTFVTDDLTAVGIAGTAGIAKQIVKLFTVELEHYEKIEGVPLTFDGKANRL  130

Query  141  AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS  200
              MVR N  AA+QGL+A+PLL G+D    D  + GRIVS+D  G W+ +E  Y ++GSGS
Sbjct  131  GGMVRSNFGAALQGLVAVPLLVGFD----DADARGRIVSYDVTGDWH-DEVDYHSIGSGS  185

Query  201  LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV  260
             +AKSS+KK +    D D  L VA EAL+DAADDD+ATGGPD++R ++PTA+ I +DGAV
Sbjct  186  AWAKSSIKKRFRHGLDADGALDVAAEALFDAADDDTATGGPDVLRNLYPTAIAITSDGAV  245

Query  261  DVPESRIAELARAIIESRSGAD  282
            +V E+ ++     +I  RS A+
Sbjct  246  EVAEASVSAATERVIARRSEAN  267



Lambda     K      H
   0.315    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 477082076112


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40