BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2110c
Length=291
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609247|ref|NP_216626.1| proteasome (beta subunit) PrcB [Myc... 577 7e-163
gi|296863655|pdb|3MKA|C Chain C, Crystal Structure Of Mycobacter... 575 2e-162
gi|340627120|ref|YP_004745572.1| proteasome subunit beta PrcB [M... 574 6e-162
gi|240171537|ref|ZP_04750196.1| proteasome (beta subunit) PrcB [... 504 7e-141
gi|118617841|ref|YP_906173.1| proteasome (beta subunit) PrcB [My... 498 6e-139
gi|118466114|ref|YP_881603.1| PcrB protein [Mycobacterium avium ... 484 7e-135
gi|41407933|ref|NP_960769.1| PrcB [Mycobacterium avium subsp. pa... 483 1e-134
gi|296165182|ref|ZP_06847729.1| proteasome [Mycobacterium parasc... 483 2e-134
gi|254819642|ref|ZP_05224643.1| PrcB [Mycobacterium intracellula... 478 6e-133
gi|90109362|pdb|2FHG|H Chain H, Crystal Structure Of Mycobacteri... 464 1e-128
gi|258588387|pdb|3H6F|C Chain C, Crystal Structure Of Mycobacter... 462 3e-128
gi|333990435|ref|YP_004523049.1| proteasome (beta subunit) PrcB ... 447 1e-123
gi|342859803|ref|ZP_08716456.1| proteasome subunit beta [Mycobac... 435 4e-120
gi|259535829|sp|A0QZ47.2|PSB_MYCS2 RecName: Full=Proteasome subu... 427 9e-118
gi|118468051|ref|YP_888185.1| proteasome subunit beta [Mycobacte... 425 5e-117
gi|108800096|ref|YP_640293.1| proteasome subunit beta [Mycobacte... 425 5e-117
gi|15827687|ref|NP_301950.1| proteasome [beta]-type subunit 2 [M... 422 3e-116
gi|145223664|ref|YP_001134342.1| 20S proteasome, A and B subunit... 416 2e-114
gi|120404421|ref|YP_954250.1| 20S proteasome, A and B subunits [... 409 4e-112
gi|169629258|ref|YP_001702907.1| proteasome (subunit beta) PrcB ... 348 4e-94
gi|312139722|ref|YP_004007058.1| 20S proteasome beta subunit prc... 335 5e-90
gi|325676828|ref|ZP_08156501.1| proteasome, beta subunit [Rhodoc... 335 6e-90
gi|75491633|sp|Q53079.1|PSB1_RHOER RecName: Full=Proteasome subu... 333 2e-89
gi|40889405|pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome W... 330 1e-88
gi|226359996|ref|YP_002777774.1| 20S proteasome beta-type subuni... 330 2e-88
gi|112491166|pdb|2H6J|H Chain H, Crystal Structure Of The Beta F... 329 2e-88
gi|302595915|sp|Q0SIF9.2|PSB_RHOSR RecName: Full=Proteasome subu... 329 4e-88
gi|229493495|ref|ZP_04387280.1| proteasome, beta subunit [Rhodoc... 327 2e-87
gi|226306661|ref|YP_002766621.1| 20S proteasome beta-type subuni... 325 4e-87
gi|343927937|ref|ZP_08767403.1| 20S proteasome beta-type subunit... 323 3e-86
gi|262202389|ref|YP_003273597.1| 20S proteasome A and subunit Bs... 322 4e-86
gi|333919677|ref|YP_004493258.1| proteasome [Amycolicicoccus sub... 322 6e-86
gi|54025141|ref|YP_119383.1| putative proteasome subunit beta [N... 313 2e-83
gi|111017863|ref|YP_700835.1| proteasome beta subunit [Rhodococc... 307 2e-81
gi|256376367|ref|YP_003100027.1| 20S proteasome subunits A and B... 306 3e-81
gi|134098820|ref|YP_001104481.1| 20S proteasome beta-subunit pre... 302 4e-80
gi|291005825|ref|ZP_06563798.1| proteasome subunit beta [Sacchar... 302 4e-80
gi|40889391|pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome >... 301 7e-80
gi|257056206|ref|YP_003134038.1| proteasome endopeptidase comple... 292 4e-77
gi|302527206|ref|ZP_07279548.1| proteasome endopeptidase complex... 290 2e-76
gi|296394010|ref|YP_003658894.1| 20S proteasome subunits AB [Seg... 288 5e-76
gi|317507302|ref|ZP_07965044.1| proteasome A-type and B-type [Se... 288 7e-76
gi|300786771|ref|YP_003767062.1| proteasome beta subunit [Amycol... 286 3e-75
gi|326382282|ref|ZP_08203974.1| 20S proteasome A and subunit Bs ... 283 2e-74
gi|324999221|ref|ZP_08120333.1| proteasome subunit beta [Pseudon... 278 8e-73
gi|117928395|ref|YP_872946.1| proteasome subunit beta [Acidother... 275 7e-72
gi|291301921|ref|YP_003513199.1| 20S proteasome subunits A/B [St... 273 3e-71
gi|145593571|ref|YP_001157868.1| 20S proteasome subunits A and B... 271 7e-71
gi|145559628|gb|ABP73653.1| SalI [Salinispora tropica] 271 7e-71
gi|296139866|ref|YP_003647109.1| 20S proteasome subunits A and B... 270 1e-70
>gi|15609247|ref|NP_216626.1| proteasome (beta subunit) PrcB [Mycobacterium tuberculosis H37Rv]
gi|15841602|ref|NP_336639.1| proteasome, beta subunit [Mycobacterium tuberculosis CDC1551]
gi|31793290|ref|NP_855783.1| proteasome (beta subunit) PrcB [Mycobacterium bovis AF2122/97]
85 more sequence titles
Length=291
Score = 577 bits (1487), Expect = 7e-163, Method: Compositional matrix adjust.
Identities = 290/291 (99%), Positives = 291/291 (100%), Gaps = 0/291 (0%)
Query 1 VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
+TWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI
Sbjct 1 MTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
Query 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
Query 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF
Sbjct 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
Query 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG
Sbjct 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
Query 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
>gi|296863655|pdb|3MKA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863657|pdb|3MKA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863659|pdb|3MKA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
11 more sequence titles
gi|296863660|pdb|3MKA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863662|pdb|3MKA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863664|pdb|3MKA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863666|pdb|3MKA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863668|pdb|3MKA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863670|pdb|3MKA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863672|pdb|3MKA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863674|pdb|3MKA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863676|pdb|3MKA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863678|pdb|3MKA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
gi|296863680|pdb|3MKA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
With Propetide And An T1a Mutation At Beta-Subunit
Length=291
Score = 575 bits (1482), Expect = 2e-162, Method: Compositional matrix adjust.
Identities = 289/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%)
Query 1 VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
+TWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHG TI
Sbjct 1 MTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGATI 60
Query 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
Query 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF
Sbjct 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
Query 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG
Sbjct 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
Query 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
>gi|340627120|ref|YP_004745572.1| proteasome subunit beta PrcB [Mycobacterium canettii CIPT 140010059]
gi|340005310|emb|CCC44466.1| proteasome (beta subunit) PrcB [Mycobacterium canettii CIPT 140010059]
Length=291
Score = 574 bits (1479), Expect = 6e-162, Method: Compositional matrix adjust.
Identities = 288/291 (99%), Positives = 290/291 (99%), Gaps = 0/291 (0%)
Query 1 VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
+TWPLPDRLSINSLSGTPAVDLSSF DFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI
Sbjct 1 MTWPLPDRLSINSLSGTPAVDLSSFADFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
Query 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
Query 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL+ALPLLAGYDIHASDPQSAGRIVSF
Sbjct 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLVALPLLAGYDIHASDPQSAGRIVSF 180
Query 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG
Sbjct 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
Query 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
>gi|240171537|ref|ZP_04750196.1| proteasome (beta subunit) PrcB [Mycobacterium kansasii ATCC 12478]
Length=288
Score = 504 bits (1298), Expect = 7e-141, Method: Compositional matrix adjust.
Identities = 255/291 (88%), Positives = 269/291 (93%), Gaps = 3/291 (1%)
Query 1 VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
+TWPLPDRLS S AVDLSSF DFLRRQAPELLPA + GGA + QLPHGTTI
Sbjct 1 MTWPLPDRLSPKSALSGSAVDLSSFADFLRRQAPELLPAGVGGGAQPSD---QLPHGTTI 57
Query 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
VALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAAVAVEFARLYAVEL
Sbjct 58 VALKYPGGVVIAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAVAVEFARLYAVEL 117
Query 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
EHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDIHA+DPQ+AGRIVSF
Sbjct 118 EHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLIALPLLAGYDIHAADPQTAGRIVSF 177
Query 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
DAAGGWNIEEEGYQ+VGSGSLFAKSSMKKLYSQVTDGDS LRVAVEALYDAADDDSATGG
Sbjct 178 DAAGGWNIEEEGYQSVGSGSLFAKSSMKKLYSQVTDGDSALRVAVEALYDAADDDSATGG 237
Query 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
PDLVRGI+PTAV IDADGAVD+PESRIAELAR +I SRS ADTFG DGGEK
Sbjct 238 PDLVRGIYPTAVAIDADGAVDIPESRIAELARDVIGSRSRADTFGPDGGEK 288
>gi|118617841|ref|YP_906173.1| proteasome (beta subunit) PrcB [Mycobacterium ulcerans Agy99]
gi|183983084|ref|YP_001851375.1| proteasome (beta subunit) PrcB [Mycobacterium marinum M]
gi|302595767|sp|B2HFV6.1|PSB_MYCMM RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|302595774|sp|A0PQT3.1|PSB_MYCUA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|118569951|gb|ABL04702.1| proteasome (beta subunit) PrcB [Mycobacterium ulcerans Agy99]
gi|183176410|gb|ACC41520.1| proteasome (beta subunit) PrcB [Mycobacterium marinum M]
Length=289
Score = 498 bits (1281), Expect = 6e-139, Method: Compositional matrix adjust.
Identities = 251/291 (87%), Positives = 266/291 (92%), Gaps = 2/291 (0%)
Query 1 VTWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTI 60
+TWPLPDRLSINS AVDLSSF +FLRRQAPELLPASI G G QLPH TTI
Sbjct 1 MTWPLPDRLSINSAISGSAVDLSSFAEFLRRQAPELLPASIKHGGGAVGD--QLPHATTI 58
Query 61 VALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVEL 120
VALKYPGGV++AGDRRSTQGNMI+GRDVRKVYITDDYTATGIAGTAA+AVEFARLYAVEL
Sbjct 59 VALKYPGGVLIAGDRRSTQGNMIAGRDVRKVYITDDYTATGIAGTAAIAVEFARLYAVEL 118
Query 121 EHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSF 180
EHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLA YDIHASDP+SAGRIVSF
Sbjct 119 EHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLASYDIHASDPRSAGRIVSF 178
Query 181 DAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGG 240
DAAGGWNIEEEGYQAVGSGS+FAKSS+KKLY+QVTD DS LRVAVEALYDAADDDSATGG
Sbjct 179 DAAGGWNIEEEGYQAVGSGSIFAKSSIKKLYAQVTDADSALRVAVEALYDAADDDSATGG 238
Query 241 PDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
PDLVRGI+PTAV I+ADGAVDVPE RIAELAR +I SRS ADTFG DGGEK
Sbjct 239 PDLVRGIYPTAVTINADGAVDVPEVRIAELAREVIGSRSRADTFGPDGGEK 289
>gi|118466114|ref|YP_881603.1| PcrB protein [Mycobacterium avium 104]
gi|302595761|sp|A0QFB5.1|PSB_MYCA1 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|118167401|gb|ABK68298.1| PcrB protein [Mycobacterium avium 104]
Length=303
Score = 484 bits (1246), Expect = 7e-135, Method: Compositional matrix adjust.
Identities = 246/303 (82%), Positives = 269/303 (89%), Gaps = 12/303 (3%)
Query 1 VTWPLPDRLSINS------LSGTPAVDLSSFTDFLRRQAPELLPASI----SGGAPLAGG 50
+TW PDRLS NS SG PAVDLSSF DFLRRQAPELLPA++ SG A +GG
Sbjct 1 MTWQFPDRLSTNSALPGPAFSGQPAVDLSSFADFLRRQAPELLPAALGGAQSGPASSSGG 60
Query 51 DAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAV 110
QLPHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AV
Sbjct 61 TGQLPHGTTIVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAIAV 120
Query 111 EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD 170
EFARLYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDI A D
Sbjct 121 EFARLYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLAGYDIDARD 180
Query 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD 230
P+ AGRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYSQV D DS +RVA+EALYD
Sbjct 181 PEGAGRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSQVVDADSAVRVAIEALYD 240
Query 231 AADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD--G 288
AADDDSATGGPDLVRGI+PTAV I A+GA++VPESRIAELAR +I+SRS ADTFG D G
Sbjct 241 AADDDSATGGPDLVRGIYPTAVTIGAEGALEVPESRIAELAREVIQSRSRADTFGPDAAG 300
Query 289 GEK 291
G+K
Sbjct 301 GDK 303
>gi|41407933|ref|NP_960769.1| PrcB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|254775073|ref|ZP_05216589.1| PrcB [Mycobacterium avium subsp. avium ATCC 25291]
gi|81571311|sp|Q73YW8.1|PSB_MYCPA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|41396287|gb|AAS04152.1| PrcB [Mycobacterium avium subsp. paratuberculosis K-10]
gi|336461987|gb|EGO40836.1| proteasome, beta subunit, bacterial type [Mycobacterium avium
subsp. paratuberculosis S397]
Length=303
Score = 483 bits (1244), Expect = 1e-134, Method: Compositional matrix adjust.
Identities = 246/303 (82%), Positives = 269/303 (89%), Gaps = 12/303 (3%)
Query 1 VTWPLPDRLSINS------LSGTPAVDLSSFTDFLRRQAPELLPASI----SGGAPLAGG 50
+TW PDRLS NS SG PAVDLSSF DFLRRQAPELLPA++ SG A +GG
Sbjct 1 MTWQFPDRLSTNSALPGPAFSGQPAVDLSSFADFLRRQAPELLPAALGGAQSGPASSSGG 60
Query 51 DAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAV 110
QLPHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AV
Sbjct 61 TGQLPHGTTIVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAIAV 120
Query 111 EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD 170
EFARLYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDI A D
Sbjct 121 EFARLYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLAGYDIDAPD 180
Query 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD 230
P+ AGRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYSQV D DS +RVA+EALYD
Sbjct 181 PEGAGRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSQVVDADSAVRVAIEALYD 240
Query 231 AADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD--G 288
AADDDSATGGPDLVRGI+PTAV I A+GA++VPESRIAELAR +I+SRS ADTFG D G
Sbjct 241 AADDDSATGGPDLVRGIYPTAVTIGAEGALEVPESRIAELAREVIQSRSRADTFGPDAAG 300
Query 289 GEK 291
G+K
Sbjct 301 GDK 303
>gi|296165182|ref|ZP_06847729.1| proteasome [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295899371|gb|EFG78830.1| proteasome [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=297
Score = 483 bits (1242), Expect = 2e-134, Method: Compositional matrix adjust.
Identities = 247/297 (84%), Positives = 267/297 (90%), Gaps = 6/297 (2%)
Query 1 VTWPLPDRLSINS------LSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQL 54
+TWP DRLS NS LS PAVDLSSF DFLRRQAP+LLPAS+ GGA G AQL
Sbjct 1 MTWPFSDRLSTNSALPGSALSRNPAVDLSSFADFLRRQAPDLLPASLGGGAHGDGAGAQL 60
Query 55 PHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFAR 114
PHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVY+TDDYTATGIAGTAA+AVEFAR
Sbjct 61 PHGTTIVALKYPGGVVIAGDRRSTQGNMIAGRDVKKVYVTDDYTATGIAGTAAIAVEFAR 120
Query 115 LYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSA 174
LYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLLAGYDI A DP+ A
Sbjct 121 LYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLAGYDIGAPDPEGA 180
Query 175 GRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADD 234
GRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYS+V D DS +RVAVEALYDAADD
Sbjct 181 GRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSRVVDADSAVRVAVEALYDAADD 240
Query 235 DSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
DSATGGPDLVRGI+PTAV I A+GA +VPESRIAELAR +IESRS ADTFG DGGEK
Sbjct 241 DSATGGPDLVRGIYPTAVTIGAEGAAEVPESRIAELAREVIESRSRADTFGPDGGEK 297
>gi|254819642|ref|ZP_05224643.1| PrcB [Mycobacterium intracellulare ATCC 13950]
Length=292
Score = 478 bits (1229), Expect = 6e-133, Method: Compositional matrix adjust.
Identities = 243/293 (83%), Positives = 261/293 (90%), Gaps = 3/293 (1%)
Query 1 VTWPLPDRLSINS-LSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTT 59
+TW DRL INS L G PAVDLSSF DFLRRQAPELLPAS G AQLPHGTT
Sbjct 1 MTWQFSDRLPINSALPGNPAVDLSSFADFLRRQAPELLPASF-GAVQSESAGAQLPHGTT 59
Query 60 IVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVE 119
IVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVE
Sbjct 60 IVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITDDYTATGIAGTAAIAVEFARLYAVE 119
Query 120 LEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS 179
LEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL+ALPLL GYDI A DP+ AGRIVS
Sbjct 120 LEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGLVALPLLVGYDIDAPDPEGAGRIVS 179
Query 180 FDAAGGWNI-EEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT 238
FDAAGGWN+ EEEGYQ+VGSGS+FAKSSMKKLYSQVTD DS +RVA+EALYDAADDDSAT
Sbjct 180 FDAAGGWNLEEEEGYQSVGSGSIFAKSSMKKLYSQVTDADSAVRVAIEALYDAADDDSAT 239
Query 239 GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
GGPDLVRGI+PTAV I +GA+DVPE RIAELAR +I+SRS ADTFG DGGEK
Sbjct 240 GGPDLVRGIYPTAVTIGPEGALDVPEGRIAELAREVIQSRSRADTFGPDGGEK 292
>gi|90109362|pdb|2FHG|H Chain H, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109364|pdb|2FHG|C Chain C, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109366|pdb|2FHG|E Chain E, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
69 more sequence titles
gi|90109368|pdb|2FHG|G Chain G, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109370|pdb|2FHG|J Chain J, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109372|pdb|2FHG|L Chain L, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109374|pdb|2FHG|N Chain N, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109376|pdb|2FHG|P Chain P, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109378|pdb|2FHG|R Chain R, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109380|pdb|2FHG|T Chain T, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109382|pdb|2FHG|V Chain V, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109384|pdb|2FHG|X Chain X, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109386|pdb|2FHG|Z Chain Z, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109388|pdb|2FHG|2 Chain 2, Crystal Structure Of Mycobacterial Tuberculosis Proteasome
gi|90109390|pdb|2FHH|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109392|pdb|2FHH|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109394|pdb|2FHH|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109396|pdb|2FHH|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109398|pdb|2FHH|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109400|pdb|2FHH|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109402|pdb|2FHH|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109404|pdb|2FHH|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109406|pdb|2FHH|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109408|pdb|2FHH|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109410|pdb|2FHH|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109412|pdb|2FHH|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109414|pdb|2FHH|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|90109416|pdb|2FHH|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With A Peptidyl Boronate Inhibitor Mln-273
gi|258588506|pdb|3HFA|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588507|pdb|3HFA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588508|pdb|3HFA|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588509|pdb|3HFA|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588510|pdb|3HFA|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588511|pdb|3HFA|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588512|pdb|3HFA|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588513|pdb|3HFA|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588514|pdb|3HFA|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588515|pdb|3HFA|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588516|pdb|3HFA|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588517|pdb|3HFA|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588518|pdb|3HFA|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|258588519|pdb|3HFA|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant
gi|299689167|pdb|3MFE|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689174|pdb|3MFE|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689210|pdb|3MI0|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689212|pdb|3MI0|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689214|pdb|3MI0|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689215|pdb|3MI0|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689217|pdb|3MI0|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689219|pdb|3MI0|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689221|pdb|3MI0|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689223|pdb|3MI0|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689225|pdb|3MI0|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689227|pdb|3MI0|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689229|pdb|3MI0|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689231|pdb|3MI0|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689233|pdb|3MI0|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|299689235|pdb|3MI0|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
At 2.2 A
gi|307776450|pdb|3KRD|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776452|pdb|3KRD|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776454|pdb|3KRD|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776455|pdb|3KRD|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776457|pdb|3KRD|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776459|pdb|3KRD|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776461|pdb|3KRD|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776463|pdb|3KRD|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776465|pdb|3KRD|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776467|pdb|3KRD|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776469|pdb|3KRD|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776471|pdb|3KRD|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776473|pdb|3KRD|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
gi|307776475|pdb|3KRD|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
In Complex With Fellutamide B
Length=240
Score = 464 bits (1193), Expect = 1e-128, Method: Compositional matrix adjust.
Identities = 234/234 (100%), Positives = 234/234 (100%), Gaps = 0/234 (0%)
Query 58 TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA 117
TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA
Sbjct 1 TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA 60
Query 118 VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI 177
VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI
Sbjct 61 VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI 120
Query 178 VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA 237
VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA
Sbjct 121 VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA 180
Query 238 TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct 181 TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 234
>gi|258588387|pdb|3H6F|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588389|pdb|3H6F|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588391|pdb|3H6F|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
65 more sequence titles
gi|258588392|pdb|3H6F|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588394|pdb|3H6F|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588396|pdb|3H6F|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588398|pdb|3H6F|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588400|pdb|3H6F|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588402|pdb|3H6F|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588404|pdb|3H6F|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588406|pdb|3H6F|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588408|pdb|3H6F|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588410|pdb|3H6F|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588412|pdb|3H6F|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Ht1171
gi|258588415|pdb|3H6I|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588417|pdb|3H6I|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588419|pdb|3H6I|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588420|pdb|3H6I|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588422|pdb|3H6I|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588424|pdb|3H6I|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588426|pdb|3H6I|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588428|pdb|3H6I|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588430|pdb|3H6I|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588432|pdb|3H6I|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588434|pdb|3H6I|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588436|pdb|3H6I|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588438|pdb|3H6I|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588440|pdb|3H6I|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Modified By Inhibitor Gl1
gi|258588478|pdb|3HF9|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588479|pdb|3HF9|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588480|pdb|3HF9|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588481|pdb|3HF9|G Chain G, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588482|pdb|3HF9|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588483|pdb|3HF9|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588484|pdb|3HF9|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588485|pdb|3HF9|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588486|pdb|3HF9|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588487|pdb|3HF9|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588488|pdb|3HF9|V Chain V, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588489|pdb|3HF9|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588490|pdb|3HF9|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588491|pdb|3HF9|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588492|pdb|3HF9|HH Chain h, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588493|pdb|3HF9|CC Chain c, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588494|pdb|3HF9|EE Chain e, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588495|pdb|3HF9|GG Chain g, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588496|pdb|3HF9|JJ Chain j, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588497|pdb|3HF9|LL Chain l, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588498|pdb|3HF9|NN Chain n, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588499|pdb|3HF9|PP Chain p, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588500|pdb|3HF9|RR Chain r, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588501|pdb|3HF9|TT Chain t, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588502|pdb|3HF9|VV Chain v, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588503|pdb|3HF9|XX Chain x, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588504|pdb|3HF9|ZZ Chain z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|258588505|pdb|3HF9|4 Chain 4, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant Modified By Inhibitor Gl1
gi|299689164|pdb|3MFE|H Chain H, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689165|pdb|3MFE|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689166|pdb|3MFE|E Chain E, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689168|pdb|3MFE|J Chain J, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689169|pdb|3MFE|L Chain L, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689170|pdb|3MFE|N Chain N, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689171|pdb|3MFE|P Chain P, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689172|pdb|3MFE|R Chain R, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689173|pdb|3MFE|T Chain T, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689175|pdb|3MFE|X Chain X, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689176|pdb|3MFE|Z Chain Z, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
gi|299689177|pdb|3MFE|2 Chain 2, Crystal Structure Of Mycobacterium Tuberculosis Proteasome
Open-Gate Mutant With H0 Movement
Length=240
Score = 462 bits (1188), Expect = 3e-128, Method: Compositional matrix adjust.
Identities = 233/233 (100%), Positives = 233/233 (100%), Gaps = 0/233 (0%)
Query 59 TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV 118
TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV
Sbjct 2 TIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAV 61
Query 119 ELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIV 178
ELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIV
Sbjct 62 ELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIV 121
Query 179 SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT 238
SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT
Sbjct 122 SFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSAT 181
Query 239 GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK
Sbjct 182 GGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 234
>gi|333990435|ref|YP_004523049.1| proteasome (beta subunit) PrcB [Mycobacterium sp. JDM601]
gi|333486403|gb|AEF35795.1| proteasome (beta subunit) PrcB [Mycobacterium sp. JDM601]
Length=277
Score = 447 bits (1149), Expect = 1e-123, Method: Compositional matrix adjust.
Identities = 226/260 (87%), Positives = 240/260 (93%), Gaps = 2/260 (0%)
Query 20 VDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQ 79
VDLSSF+DFLRRQAP+LLPA +G + + G A+LPHGTTIVALKYPGGVVMAGDRRSTQ
Sbjct 6 VDLSSFSDFLRRQAPDLLPAGSAGLS--SAGTAELPHGTTIVALKYPGGVVMAGDRRSTQ 63
Query 80 GNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINR 139
GNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVELEHYEKLEGVPLTFAGK+NR
Sbjct 64 GNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVPLTFAGKVNR 123
Query 140 LAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG 199
LAIMVRGNL AAMQGLLALPLL YDI D Q AGRIVSFDAAGGWN+EEEGYQAVGSG
Sbjct 124 LAIMVRGNLGAAMQGLLALPLLVAYDIDDPDGQHAGRIVSFDAAGGWNVEEEGYQAVGSG 183
Query 200 SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGA 259
SLFAKSSMKKLY+QV D DS LRVAVEALYDAADDDSATGGPDLVRGI+PTAV IDADGA
Sbjct 184 SLFAKSSMKKLYAQVADADSALRVAVEALYDAADDDSATGGPDLVRGIYPTAVSIDADGA 243
Query 260 VDVPESRIAELARAIIESRS 279
VDVPESRIAELAR IIESR+
Sbjct 244 VDVPESRIAELAREIIESRT 263
>gi|342859803|ref|ZP_08716456.1| proteasome subunit beta [Mycobacterium colombiense CECT 3035]
gi|342132935|gb|EGT86155.1| proteasome subunit beta [Mycobacterium colombiense CECT 3035]
Length=255
Score = 435 bits (1118), Expect = 4e-120, Method: Compositional matrix adjust.
Identities = 216/256 (85%), Positives = 238/256 (93%), Gaps = 1/256 (0%)
Query 36 LLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITD 95
+LPAS+SG A QLPHGTTIVALKYPGGVV+AGDRRSTQGNMI+GRDV+KVYITD
Sbjct 1 MLPASLSGTQSDAA-TGQLPHGTTIVALKYPGGVVLAGDRRSTQGNMIAGRDVKKVYITD 59
Query 96 DYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL 155
DYTATGIAGTAA+AVEFARLYAVELEHYEKLEGVPLTFAGK+NRLAIMVRGNLAAAMQGL
Sbjct 60 DYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVPLTFAGKVNRLAIMVRGNLAAAMQGL 119
Query 156 LALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVT 215
+ALPLL GYDI A+DP+ AGRIVSFDAAGGWN+EEEGYQ+VGSGS+FAKSSMKKLYSQVT
Sbjct 120 VALPLLVGYDIDAADPEGAGRIVSFDAAGGWNLEEEGYQSVGSGSIFAKSSMKKLYSQVT 179
Query 216 DGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAII 275
D DS +RVA+EALYDAADDDSATGGPDLVRGI+PTAV I A+GA++VPE+RIAELAR +I
Sbjct 180 DADSAVRVAIEALYDAADDDSATGGPDLVRGIYPTAVTIGAEGALEVPEARIAELAREVI 239
Query 276 ESRSGADTFGSDGGEK 291
+SRS ADTFG DGGEK
Sbjct 240 QSRSRADTFGPDGGEK 255
>gi|259535829|sp|A0QZ47.2|PSB_MYCS2 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|2293463|gb|AAC45614.1| proteasome beta subunit [Mycobacterium smegmatis str. MC2 155]
Length=303
Score = 427 bits (1098), Expect = 9e-118, Method: Compositional matrix adjust.
Identities = 219/288 (77%), Positives = 247/288 (86%), Gaps = 5/288 (1%)
Query 2 TWPLPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTT 59
++P P L+ + P VDLSSF++ L RQAPELLP + G P+ DA +PHGTT
Sbjct 8 SFPQP-TLNTTGIPSVP-VDLSSFSELLSRQAPELLPVNRVAYGTTPVGPTDA-VPHGTT 64
Query 60 IVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVE 119
IVALKYPGGV++AGDRRSTQGNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVE
Sbjct 65 IVALKYPGGVLIAGDRRSTQGNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLYAVE 124
Query 120 LEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS 179
LEHYEKLEGVPLTF GK+NRLAIMVRGNL AA+QG +ALPLL GYD+ P+ AGRIVS
Sbjct 125 LEHYEKLEGVPLTFRGKVNRLAIMVRGNLGAALQGFVALPLLVGYDLDDPHPEGAGRIVS 184
Query 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATG 239
FDAAGGWNIEEEGYQ+VGSGS+FAKSSMKKLYSQV+D DS L+VAVEALYDAADDDSATG
Sbjct 185 FDAAGGWNIEEEGYQSVGSGSIFAKSSMKKLYSQVSDADSALKVAVEALYDAADDDSATG 244
Query 240 GPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD 287
GPDLVRGI+PTAV I A+GA +VPE+RIAELAR +IESRS DTFG D
Sbjct 245 GPDLVRGIYPTAVTIGAEGAEEVPETRIAELAREVIESRSRTDTFGPD 292
>gi|118468051|ref|YP_888185.1| proteasome subunit beta [Mycobacterium smegmatis str. MC2 155]
gi|118169338|gb|ABK70234.1| proteasome beta subunit [Mycobacterium smegmatis str. MC2 155]
Length=280
Score = 425 bits (1092), Expect = 5e-117, Method: Compositional matrix adjust.
Identities = 214/270 (80%), Positives = 239/270 (89%), Gaps = 3/270 (1%)
Query 20 VDLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRS 77
+DLSSF++ L RQAPELLP + G P+ DA +PHGTTIVALKYPGGV++AGDRRS
Sbjct 1 MDLSSFSELLSRQAPELLPVNRVAYGTTPVGPTDA-VPHGTTIVALKYPGGVLIAGDRRS 59
Query 78 TQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKI 137
TQGNMI+GRDV+KVYITDDYTATGIAGTAA+AVEFARLYAVELEHYEKLEGVPLTF GK+
Sbjct 60 TQGNMIAGRDVQKVYITDDYTATGIAGTAAIAVEFARLYAVELEHYEKLEGVPLTFRGKV 119
Query 138 NRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVG 197
NRLAIMVRGNL AA+QG +ALPLL GYD+ P+ AGRIVSFDAAGGWNIEEEGYQ+VG
Sbjct 120 NRLAIMVRGNLGAALQGFVALPLLVGYDLDDPHPEGAGRIVSFDAAGGWNIEEEGYQSVG 179
Query 198 SGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD 257
SGS+FAKSSMKKLYSQV+D DS L+VAVEALYDAADDDSATGGPDLVRGI+PTAV I A+
Sbjct 180 SGSIFAKSSMKKLYSQVSDADSALKVAVEALYDAADDDSATGGPDLVRGIYPTAVTIGAE 239
Query 258 GAVDVPESRIAELARAIIESRSGADTFGSD 287
GA +VPE+RIAELAR +IESRS DTFG D
Sbjct 240 GAEEVPETRIAELAREVIESRSRTDTFGPD 269
>gi|108800096|ref|YP_640293.1| proteasome subunit beta [Mycobacterium sp. MCS]
gi|119869223|ref|YP_939175.1| proteasome subunit beta [Mycobacterium sp. KMS]
gi|126435720|ref|YP_001071411.1| proteasome subunit beta [Mycobacterium sp. JLS]
6 more sequence titles
gi|123070021|sp|Q1B797.1|PSB_MYCSS RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|302595769|sp|A3Q193.1|PSB_MYCSJ RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|302595770|sp|A1UHS7.1|PSB_MYCSK RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|108770515|gb|ABG09237.1| proteasome endopeptidase complex, beta component, Threonine peptidase,
MEROPS family T01B [Mycobacterium sp. MCS]
gi|119695312|gb|ABL92385.1| proteasome endopeptidase complex, beta component, Threonine peptidase,
MEROPS family T01B [Mycobacterium sp. KMS]
gi|126235520|gb|ABN98920.1| proteasome endopeptidase complex, beta component, Threonine peptidase,
MEROPS family T01B [Mycobacterium sp. JLS]
Length=304
Score = 425 bits (1092), Expect = 5e-117, Method: Compositional matrix adjust.
Identities = 221/298 (75%), Positives = 249/298 (84%), Gaps = 14/298 (4%)
Query 1 VTWPLPDRLSINSLS---------GTPAV--DLSSFTDFLRRQAPELLPASISGGAPLAG 49
+TWP ++L+ LS G P+V DLSSF+D LRRQAP LLP G A L
Sbjct 1 MTWPHFEQLAFPDLSRHSSHSTTRGVPSVPMDLSSFSDMLRRQAPHLLP--FRGDASLTP 58
Query 50 GDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA 109
DA +PHGTTIVALK+PGGVVMAGDRR+TQGNMI+ RDV+KVYITDDYTATGIAGTAA+A
Sbjct 59 TDA-VPHGTTIVALKFPGGVVMAGDRRATQGNMIASRDVQKVYITDDYTATGIAGTAAIA 117
Query 110 VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHAS 169
VEFARLYAVELEHYEKLEGV LTFAGK+NRLA MVRGNL AA+QG +ALPLLAG+D+
Sbjct 118 VEFARLYAVELEHYEKLEGVALTFAGKVNRLATMVRGNLGAALQGFVALPLLAGFDLDDP 177
Query 170 DPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY 229
DPQ+AGRIVSFDAAGG N+EEEG+Q+VGSGS+FAKSSMKKLY QVTD DS LRVAVEALY
Sbjct 178 DPQAAGRIVSFDAAGGHNLEEEGFQSVGSGSIFAKSSMKKLYHQVTDADSALRVAVEALY 237
Query 230 DAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD 287
DAADDDSATGGPDLVRGIFPTAV+I ADGA +V + RIA LAR +I++RS ADTFG D
Sbjct 238 DAADDDSATGGPDLVRGIFPTAVLITADGAEEVTQERIAGLAREVIQNRSRADTFGPD 295
>gi|15827687|ref|NP_301950.1| proteasome [beta]-type subunit 2 [Mycobacterium leprae TN]
gi|221230164|ref|YP_002503580.1| proteasome beta-type subunit 2 [Mycobacterium leprae Br4923]
gi|81346071|sp|Q49780.1|PSB_MYCLE RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|302595766|sp|B8ZRF3.1|PSB_MYCLB RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|467003|gb|AAA17188.1| prcB [Mycobacterium leprae]
gi|4200274|emb|CAA22933.1| putative proteasome beta-type subunit 2 [Mycobacterium leprae]
gi|13093238|emb|CAC31703.1| proteasome [beta]-type subunit 2 [Mycobacterium leprae]
gi|219933271|emb|CAR71417.1| proteasome [beta]-type subunit 2 [Mycobacterium leprae Br4923]
Length=291
Score = 422 bits (1085), Expect = 3e-116, Method: Compositional matrix adjust.
Identities = 234/292 (81%), Positives = 252/292 (87%), Gaps = 3/292 (1%)
Query 1 VTWPLPDRLSIN-SLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTT 59
+T PDRL N + G ++ SSF D LRRQAPELLP +S G +GG QL HGTT
Sbjct 1 MTRSFPDRLPTNLAFPGISVINQSSFVDLLRRQAPELLP--VSLGGGQSGGGQQLSHGTT 58
Query 60 IVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVE 119
IV LKYPGGVV+AGDRRSTQGNMI+GRDVRKVYITDDYTATGIAG AAVAVEFARLYAVE
Sbjct 59 IVVLKYPGGVVIAGDRRSTQGNMIAGRDVRKVYITDDYTATGIAGIAAVAVEFARLYAVE 118
Query 120 LEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVS 179
LEHYEKLEGVPLTFAGK+NRLAIMVR NL AAMQGLLALPLLAGYDIHA DPQSAGRIVS
Sbjct 119 LEHYEKLEGVPLTFAGKVNRLAIMVRSNLTAAMQGLLALPLLAGYDIHAPDPQSAGRIVS 178
Query 180 FDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATG 239
FDAAGGWNIEEEGYQ+VGSGS+FAKSS+KKLYSQV+D DS LRVA+EALYDAADDDSATG
Sbjct 179 FDAAGGWNIEEEGYQSVGSGSIFAKSSIKKLYSQVSDADSALRVAIEALYDAADDDSATG 238
Query 240 GPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSDGGEK 291
GPDLVRGI+PTAV I A+GA +V ESRIAELAR IIESRS A T GS GG +
Sbjct 239 GPDLVRGIYPTAVTIGAEGAAEVTESRIAELAREIIESRSRAYTLGSFGGSE 290
>gi|145223664|ref|YP_001134342.1| 20S proteasome, A and B subunits [Mycobacterium gilvum PYR-GCK]
gi|315443990|ref|YP_004076869.1| proteasome endopeptidase complex, beta component [Mycobacterium
sp. Spyr1]
gi|302595765|sp|A4TB64.1|PSB_MYCGI RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|145216150|gb|ABP45554.1| proteasome endopeptidase complex, beta component. Threonine peptidase.
MEROPS family T01B [Mycobacterium gilvum PYR-GCK]
gi|315262293|gb|ADT99034.1| proteasome endopeptidase complex, beta component [Mycobacterium
sp. Spyr1]
Length=303
Score = 416 bits (1070), Expect = 2e-114, Method: Compositional matrix adjust.
Identities = 212/297 (72%), Positives = 242/297 (82%), Gaps = 13/297 (4%)
Query 1 VTWP----------LPDRLSINSLSGTPAVDLSSFTDFLRRQAPELLPASISGGAPLAGG 50
+TWP LP +S V+LSSF+DFLR QAP LLP S G+P
Sbjct 1 MTWPDRDTSAFPSALPGAFDASSAMSRGVVNLSSFSDFLRTQAPHLLPVS---GSPGVTP 57
Query 51 DAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAV 110
+PHGTTIVALK+PGGVVMAGDRR+TQG+MI+ RDV+KVYITDDYT TGIAGTAA+AV
Sbjct 58 SDAVPHGTTIVALKFPGGVVMAGDRRATQGHMIASRDVQKVYITDDYTVTGIAGTAAIAV 117
Query 111 EFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASD 170
EFARLYAVELEHYEKLEGV LTF GK+NRLA MVRGNL AA+QG +ALPLLAGYD+ +
Sbjct 118 EFARLYAVELEHYEKLEGVALTFPGKVNRLATMVRGNLGAALQGFVALPLLAGYDLDDPN 177
Query 171 PQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYD 230
P+ AGRIVSFDAAGG N+EEEGYQ+VGSGS+FAKSSMKKLYSQVTD DS LRVA+EALYD
Sbjct 178 PEGAGRIVSFDAAGGHNLEEEGYQSVGSGSIFAKSSMKKLYSQVTDADSALRVAIEALYD 237
Query 231 AADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD 287
AADDDSATGGPDLVRGIFPTAV+I ADGAV++ E +IA++ R II++RS ADTFG D
Sbjct 238 AADDDSATGGPDLVRGIFPTAVVITADGAVEIAEQQIADMCREIIQNRSRADTFGPD 294
>gi|120404421|ref|YP_954250.1| 20S proteasome, A and B subunits [Mycobacterium vanbaalenii PYR-1]
gi|302595775|sp|A1TAP4.1|PSB_MYCVP RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|119957239|gb|ABM14244.1| proteasome endopeptidase complex, beta component, Threonine peptidase,
MEROPS family T01B [Mycobacterium vanbaalenii PYR-1]
Length=306
Score = 409 bits (1050), Expect = 4e-112, Method: Compositional matrix adjust.
Identities = 213/298 (72%), Positives = 243/298 (82%), Gaps = 12/298 (4%)
Query 1 VTWPLPDRLSINS-----LSGTP------AVDLSSFTDFLRRQAPELLPASISGGAPLAG 49
+TWP D+ + S S P V+LSSF+DFLR QAP LLP + G
Sbjct 1 MTWPNRDQPAFPSSSSGAFSALPQGVSHGGVNLSSFSDFLRHQAPHLLPGAPGPGPTGLP 60
Query 50 GDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVA 109
DA +PHGTTIVALK PGGVVMAGDRR+TQGNMI+ RDV+KVYITDDYT TGIAGTAA+A
Sbjct 61 TDA-VPHGTTIVALKCPGGVVMAGDRRATQGNMIASRDVQKVYITDDYTVTGIAGTAAIA 119
Query 110 VEFARLYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHAS 169
VEFARLYAVELEHYEKLEGV LTF GK+NRLA MVRGNL AA+QG +ALPLLAGYD+
Sbjct 120 VEFARLYAVELEHYEKLEGVALTFPGKVNRLATMVRGNLGAALQGFVALPLLAGYDLDDP 179
Query 170 DPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALY 229
+P++AGRIVSFDAAGGWN EEEGYQ+VGSGS+FAKSSMKKLYSQVTD +S LRVAVEALY
Sbjct 180 NPEAAGRIVSFDAAGGWNFEEEGYQSVGSGSIFAKSSMKKLYSQVTDAESALRVAVEALY 239
Query 230 DAADDDSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRSGADTFGSD 287
DAADDDSATGGPDLVRGIFPTAV+I ADGA +VPE++I+ L R ++E+RS +TFG D
Sbjct 240 DAADDDSATGGPDLVRGIFPTAVVIGADGAHEVPEAKISSLCREVVENRSRTETFGPD 297
>gi|169629258|ref|YP_001702907.1| proteasome (subunit beta) PrcB [Mycobacterium abscessus ATCC
19977]
gi|302595762|sp|B1MAI2.1|PSB_MYCA9 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|169241225|emb|CAM62253.1| Proteasome (beta subunit) PrcB [Mycobacterium abscessus]
Length=292
Score = 348 bits (894), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 179/260 (69%), Positives = 212/260 (82%), Gaps = 3/260 (1%)
Query 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN 81
LSSF+++LR QAPELLPA A + G LPHGTTIVAL Y GGV++AGDRR+TQGN
Sbjct 22 LSSFSEYLRAQAPELLPALGKASADVIG---NLPHGTTIVALTYRGGVLIAGDRRATQGN 78
Query 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA 141
I+ RD+ KV ITD+Y+ATGIAGTAA+AVEFARLYAVELEHYEKLEGV LTF GK NRL+
Sbjct 79 YIANRDIDKVQITDNYSATGIAGTAAIAVEFARLYAVELEHYEKLEGVQLTFNGKANRLS 138
Query 142 IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201
+VRGNLAAAMQGL+A+PLL GYD+ + ++AGRIVSFD AGGW++E +GYQAVGSGS+
Sbjct 139 ALVRGNLAAAMQGLVAVPLLVGYDLDDPNGETAGRIVSFDVAGGWHVESDGYQAVGSGSV 198
Query 202 FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261
FAKSS+KKLY D + L VAVEALYDAADDDSATGGPDLVR +FPTA+ ID+ GAV
Sbjct 199 FAKSSIKKLYRPGGDALTALAVAVEALYDAADDDSATGGPDLVRRVFPTAIRIDSGGAVR 258
Query 262 VPESRIAELARAIIESRSGA 281
VPE+ I +AR +I R+ A
Sbjct 259 VPEADIERIAREVIAKRTEA 278
>gi|312139722|ref|YP_004007058.1| 20S proteasome beta subunit prcb [Rhodococcus equi 103S]
gi|311889061|emb|CBH48374.1| putative 20S proteasome beta subunit PrcB [Rhodococcus equi 103S]
Length=284
Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 172/264 (66%), Positives = 206/264 (79%), Gaps = 6/264 (2%)
Query 19 AVDLSSFTDFLRRQAPELLPAS---ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDR 75
A +LSSFT++LR APE+LP + ++G P GD PHGTTIVAL + GGVV+AGDR
Sbjct 17 ASNLSSFTEYLRLNAPEMLPGNRIDMNGNGP--DGDVA-PHGTTIVALTFAGGVVIAGDR 73
Query 76 RSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAG 135
R+T GN+I+ RDV KV++TDDY+A GIAGTA VA+E RL+AVELEHYEK+EGV LTF G
Sbjct 74 RATMGNLIASRDVEKVFVTDDYSAAGIAGTAGVAIELVRLFAVELEHYEKIEGVQLTFDG 133
Query 136 KINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQA 195
K NRL+ MVRGNL AAMQGL +PLL G+D+ A DP+ AGRIVS+D GG E GY A
Sbjct 134 KANRLSSMVRGNLGAAMQGLAVVPLLVGFDLDAPDPERAGRIVSYDVVGGRYEERAGYHA 193
Query 196 VGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID 255
VGSGSLFAKSS+KKLY + D DS LR+A+EALYDAADDDSATGGPDLVR I+PTAV I
Sbjct 194 VGSGSLFAKSSLKKLYREGADEDSALRMAIEALYDAADDDSATGGPDLVRSIYPTAVSIT 253
Query 256 ADGAVDVPESRIAELARAIIESRS 279
+ GAV+VP R AELAR ++ R+
Sbjct 254 SAGAVNVPAERTAELARTVVAGRT 277
>gi|325676828|ref|ZP_08156501.1| proteasome, beta subunit [Rhodococcus equi ATCC 33707]
gi|325552376|gb|EGD22065.1| proteasome, beta subunit [Rhodococcus equi ATCC 33707]
Length=284
Score = 335 bits (858), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 172/264 (66%), Positives = 206/264 (79%), Gaps = 6/264 (2%)
Query 19 AVDLSSFTDFLRRQAPELLPAS---ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDR 75
A +LSSFT++LR APE+LP + ++G P GD PHGTTIVAL + GGVV+AGDR
Sbjct 17 ASNLSSFTEYLRLHAPEMLPGNRIDMNGNGP--DGDVA-PHGTTIVALTFAGGVVIAGDR 73
Query 76 RSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAG 135
R+T GN+I+ RDV KV++TDDY+A GIAGTA VA+E RL+AVELEHYEK+EGV LTF G
Sbjct 74 RATMGNLIASRDVEKVFVTDDYSAAGIAGTAGVAIELVRLFAVELEHYEKIEGVQLTFDG 133
Query 136 KINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQA 195
K NRL+ MVRGNL AAMQGL +PLL G+D+ A DP+ AGRIVS+D GG E GY A
Sbjct 134 KANRLSSMVRGNLGAAMQGLAVVPLLVGFDLDAPDPERAGRIVSYDVVGGRYEERAGYHA 193
Query 196 VGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID 255
VGSGSLFAKSS+KKLY + D DS LR+A+EALYDAADDDSATGGPDLVR I+PTAV I
Sbjct 194 VGSGSLFAKSSLKKLYREGADEDSALRMAIEALYDAADDDSATGGPDLVRSIYPTAVSIT 253
Query 256 ADGAVDVPESRIAELARAIIESRS 279
+ GAV+VP R AELAR ++ R+
Sbjct 254 SAGAVNVPAERTAELARTVVAGRT 277
>gi|75491633|sp|Q53079.1|PSB1_RHOER RecName: Full=Proteasome subunit beta 1; AltName: Full=20S proteasome
beta subunit 1; AltName: Full=Proteasome core protein
PrcB 1; Flags: Precursor
gi|847769|gb|AAC45740.1| proteasome beta-type subunit 1 [Rhodococcus erythropolis]
Length=294
Score = 333 bits (854), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/267 (65%), Positives = 201/267 (76%), Gaps = 9/267 (3%)
Query 21 DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA 72
+LSSFTD+LR APELLP S GG + GD PHGTTIVAL Y GGV++A
Sbjct 22 NLSSFTDYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA 80
Query 73 GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT 132
GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E RL+AVELEHYEK+EGVPLT
Sbjct 81 GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140
Query 133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192
F GK NRLA MVRGNL AAMQGL +PLL GYD+ A D AGRIVS+D GG E G
Sbjct 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 200
Query 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252
Y AVGSGSLFAKS++KK+YS +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct 201 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260
Query 253 IIDADGAVDVPESRIAELARAIIESRS 279
I GAV V E +ELAR I+ R+
Sbjct 261 TITQAGAVHVSEETTSELARRIVAERT 287
>gi|40889405|pdb|1Q5R|H Chain H, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
gi|40889406|pdb|1Q5R|I Chain I, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
gi|40889407|pdb|1Q5R|J Chain J, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
gi|40889408|pdb|1Q5R|K Chain K, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
gi|40889409|pdb|1Q5R|L Chain L, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
gi|40889410|pdb|1Q5R|M Chain M, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
gi|40889411|pdb|1Q5R|N Chain N, The Rhodococcus 20s Proteasome With Unprocessed Pro-Peptides
Length=294
Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 170/267 (64%), Positives = 200/267 (75%), Gaps = 9/267 (3%)
Query 21 DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA 72
+LSSFTD+LR APELLP S GG + GD PHGTTIVAL Y GGV++A
Sbjct 22 NLSSFTDYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA 80
Query 73 GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT 132
GDRR+TQGN+I+ RDV VY+TD+Y+A GIAGTA +A+E RL+AVELEHYEK+EGVPLT
Sbjct 81 GDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140
Query 133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192
F GK NRLA MVRGNL AAMQGL +PLL GYD+ A D AGRIVS+D GG E G
Sbjct 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 200
Query 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252
Y AVGSGSLFAKS++KK+YS +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct 201 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260
Query 253 IIDADGAVDVPESRIAELARAIIESRS 279
I GAV V E +ELAR I+ R+
Sbjct 261 TITQAGAVHVSEETTSELARRIVAERT 287
>gi|226359996|ref|YP_002777774.1| 20S proteasome beta-type subunit [Rhodococcus opacus B4]
gi|302595781|sp|C1ASP7.1|PSB_RHOOB RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|226238481|dbj|BAH48829.1| 20S proteasome beta-type subunit [Rhodococcus opacus B4]
Length=294
Score = 330 bits (845), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 169/267 (64%), Positives = 201/267 (76%), Gaps = 9/267 (3%)
Query 21 DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA 72
+LSSFT++LR APELLP S GG + GD PHGTTIVAL Y GGV++A
Sbjct 22 NLSSFTEYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA 80
Query 73 GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT 132
GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E RL+AVELEHYEK+EGVPLT
Sbjct 81 GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140
Query 133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192
F GK NRLA MVRGNL AAMQGL +PLL GYD+ A + AGRIVS+D GG E G
Sbjct 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADEEARAGRIVSYDVVGGRYEERAG 200
Query 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252
Y AVGSGSLFAKS++KK+YS +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct 201 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260
Query 253 IIDADGAVDVPESRIAELARAIIESRS 279
I GAV V E +ELAR I+ R+
Sbjct 261 TITQAGAVHVSEETTSELARRIVAERT 287
>gi|112491166|pdb|2H6J|H Chain H, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
gi|112491167|pdb|2H6J|I Chain I, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
gi|112491168|pdb|2H6J|J Chain J, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
gi|112491169|pdb|2H6J|K Chain K, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
gi|112491170|pdb|2H6J|L Chain L, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
gi|112491171|pdb|2H6J|M Chain M, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
gi|112491172|pdb|2H6J|N Chain N, Crystal Structure Of The Beta F145a Rhodococcus Proteasome
(Casp Target)
Length=294
Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/267 (64%), Positives = 200/267 (75%), Gaps = 9/267 (3%)
Query 21 DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA 72
+LSSFTD+LR APELLP S GG + GD PHGTTIVAL Y GGV++A
Sbjct 22 NLSSFTDYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA 80
Query 73 GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT 132
GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E RL+AVELEHYEK+EGVPLT
Sbjct 81 GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLT 140
Query 133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192
F GK NRLA MVRGNL AAMQGL +PLL GYD+ A D AGRIVS+D GG E G
Sbjct 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAG 200
Query 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252
Y AVGSGSL AKS++KK+YS +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct 201 YHAVGSGSLAAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260
Query 253 IIDADGAVDVPESRIAELARAIIESRS 279
I GAV V E +ELAR I+ R+
Sbjct 261 TITQAGAVHVSEETTSELARRIVAERT 287
>gi|302595915|sp|Q0SIF9.2|PSB_RHOSR RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
Length=294
Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 169/267 (64%), Positives = 200/267 (75%), Gaps = 9/267 (3%)
Query 21 DLSSFTDFLRRQAPELLPA--------SISGGAPLAGGDAQLPHGTTIVALKYPGGVVMA 72
+LSSFT++LR APELLP S GG + GD PHGTTIVAL Y GGV++A
Sbjct 22 NLSSFTEYLRGHAPELLPENRIGHRSHSTRGGDGMESGDLA-PHGTTIVALTYKGGVLLA 80
Query 73 GDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLT 132
GDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E RL+AVELEHYEK+EGV LT
Sbjct 81 GDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVQLT 140
Query 133 FAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEG 192
F GK NRLA MVRGNL AAMQGL +PLL GYD+ A D AGRIVS+D GG E G
Sbjct 141 FDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDEAHAGRIVSYDVVGGRYEERAG 200
Query 193 YQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAV 252
Y AVGSGSLFAKS++KK+YS +D ++ LR A+E+LYDAADDDSATGGPDL RGI+PTAV
Sbjct 201 YHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAV 260
Query 253 IIDADGAVDVPESRIAELARAIIESRS 279
I GAV V E +ELAR I+ R+
Sbjct 261 TITQAGAVHVSEETTSELARRIVAERT 287
>gi|229493495|ref|ZP_04387280.1| proteasome, beta subunit [Rhodococcus erythropolis SK121]
gi|229319456|gb|EEN85292.1| proteasome, beta subunit [Rhodococcus erythropolis SK121]
Length=277
Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/261 (65%), Positives = 204/261 (79%), Gaps = 2/261 (0%)
Query 21 DLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRST 78
+LSSF+++LR APE LP + G + GG PHGTTIVA+ Y GGV++AGDRR+T
Sbjct 6 NLSSFSEYLRVHAPEHLPQNRFADTGGVVMGGGDVAPHGTTIVAISYAGGVLLAGDRRAT 65
Query 79 QGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKIN 138
GN+I+ RDV+KVY+TDDY+A GIAGTA +A+E RL+AVELEHYEK+EGVPLTF GK N
Sbjct 66 MGNLIASRDVQKVYVTDDYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKAN 125
Query 139 RLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGS 198
RL+ MVRGNL AAMQGL +PLL GYD+ A DP +AGRIVS+D GG E GY AVGS
Sbjct 126 RLSSMVRGNLGAAMQGLAVVPLLVGYDLDAVDPSTAGRIVSYDVVGGRYEERAGYHAVGS 185
Query 199 GSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG 258
GSLFAKS++KKLYS D D+ LR AVEALYDAADDDSATGGPDL RGI+PTAV I + G
Sbjct 186 GSLFAKSALKKLYSPGIDEDTALRFAVEALYDAADDDSATGGPDLTRGIYPTAVTITSAG 245
Query 259 AVDVPESRIAELARAIIESRS 279
AV++ +R AE+AR I+ +R+
Sbjct 246 AVELLPTRAAEIAREIVAART 266
>gi|226306661|ref|YP_002766621.1| 20S proteasome beta-type subunit [Rhodococcus erythropolis PR4]
gi|75491637|sp|Q53083.1|PSB2_RHOER RecName: Full=Proteasome subunit beta 2; AltName: Full=20S proteasome
beta subunit 2; AltName: Full=Proteasome core protein
PrcB 2; Flags: Precursor
gi|302595780|sp|C0ZZU7.1|PSB_RHOE4 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|847774|gb|AAC45736.1| proteasome beta-type subunit 2 [Rhodococcus erythropolis]
gi|226185778|dbj|BAH33882.1| 20S proteasome beta-type subunit [Rhodococcus erythropolis PR4]
Length=292
Score = 325 bits (834), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 167/261 (64%), Positives = 203/261 (78%), Gaps = 2/261 (0%)
Query 21 DLSSFTDFLRRQAPELLPAS--ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRST 78
+LSSF+++LR APE LP + G + GG PHGTTIVA+ Y GGV++AGDRR+T
Sbjct 21 NLSSFSEYLRVHAPEHLPQNRFADTGGVVMGGGDVAPHGTTIVAISYAGGVLLAGDRRAT 80
Query 79 QGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKIN 138
GN+I+ RDV+KVY+TDDY+A GIAGTA +A+E RL+AVELEHYEK+EGVPLTF GK N
Sbjct 81 MGNLIASRDVQKVYVTDDYSAAGIAGTAGIAIELVRLFAVELEHYEKIEGVPLTFDGKAN 140
Query 139 RLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGS 198
RL+ MVRGNL AAMQGL +PLL GYD+ A DP AGRIVS+D GG E GY AVGS
Sbjct 141 RLSSMVRGNLGAAMQGLAVVPLLVGYDLDAVDPSRAGRIVSYDVVGGRYEERAGYHAVGS 200
Query 199 GSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG 258
GSLFAKS++KKLYS D D+ LR AVEALYDAADDDSATGGPDL RGI+PTAV I + G
Sbjct 201 GSLFAKSALKKLYSPGIDEDTALRFAVEALYDAADDDSATGGPDLTRGIYPTAVTITSAG 260
Query 259 AVDVPESRIAELARAIIESRS 279
AV++ ++ AE+AR I+ +R+
Sbjct 261 AVELSTAKAAEIAREIVAART 281
>gi|343927937|ref|ZP_08767403.1| 20S proteasome beta-type subunit [Gordonia alkanivorans NBRC
16433]
gi|343762160|dbj|GAA14329.1| 20S proteasome beta-type subunit [Gordonia alkanivorans NBRC
16433]
Length=293
Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 166/266 (63%), Positives = 200/266 (76%), Gaps = 10/266 (3%)
Query 21 DLSSFTDFLRRQAPELLP-------ASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAG 73
D+SSFT+FLR APE LP S +GGA AG +PHGTTIVA+ YPGGVV+AG
Sbjct 23 DISSFTEFLRLHAPEQLPQAQVDRVGSFAGGADGAG---DIPHGTTIVAVSYPGGVVLAG 79
Query 74 DRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTF 133
DRR+T GN+I+ RDV+KVYITD+Y+A GIAGTA +A+E RL+AVELEHYEK+EGVPLT
Sbjct 80 DRRATMGNLIATRDVKKVYITDEYSAAGIAGTAGIAIEMVRLFAVELEHYEKIEGVPLTL 139
Query 134 AGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGY 193
GK++RLA MVRGNL AA+QGL A+PLL GYDI DP GRI SFD AG + E GY
Sbjct 140 DGKVSRLASMVRGNLGAALQGLAAIPLLVGYDIDHDDPTERGRIFSFDVAGDRHEEFGGY 199
Query 194 QAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVI 253
A+GSGS+FAKSS+KKLY D + +AVE+LYDAADDDSATGGPDLVR IFP A +
Sbjct 200 TAIGSGSVFAKSSLKKLYRSDLTADEAIAIAVESLYDAADDDSATGGPDLVRKIFPMAAV 259
Query 254 IDADGAVDVPESRIAELARAIIESRS 279
+DA GA +V + I ARA++E R+
Sbjct 260 VDAQGAREVDAAEIESAARAVVERRA 285
>gi|262202389|ref|YP_003273597.1| 20S proteasome A and subunit Bs [Gordonia bronchialis DSM 43247]
gi|302595826|sp|D0LDT1.1|PSB_GORB4 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|262085736|gb|ACY21704.1| 20S proteasome A and B subunits [Gordonia bronchialis DSM 43247]
Length=292
Score = 322 bits (826), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 163/259 (63%), Positives = 197/259 (77%), Gaps = 0/259 (0%)
Query 21 DLSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQG 80
D+SSFT++LR AP+ LP + + L +PHGTTIVA+ YPGGV++AGDRR+T G
Sbjct 26 DISSFTEYLRAHAPDQLPQARAEAMGLHRAADDIPHGTTIVAVSYPGGVILAGDRRATMG 85
Query 81 NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL 140
N+I+ RDV+KVYITD+Y+A GIAGTA +A+E RL+AVELEHYEKLEGVPLT GK++RL
Sbjct 86 NLIATRDVKKVYITDEYSAAGIAGTAGIAIEMVRLFAVELEHYEKLEGVPLTLDGKVSRL 145
Query 141 AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS 200
A MVRGNL AA+QGL A+PLL GYDI DP GRI SFD AG + E GYQA+GSGS
Sbjct 146 ASMVRGNLGAALQGLAAVPLLVGYDIDHDDPTERGRIFSFDVAGDRHEEFGGYQAIGSGS 205
Query 201 LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV 260
+FAKSS+KKLY D S L +AVEALYDAADDDSATGGPD+VR IFP A ++DA GA
Sbjct 206 VFAKSSLKKLYRHDLDEASALAIAVEALYDAADDDSATGGPDIVRKIFPLAAVVDAGGAR 265
Query 261 DVPESRIAELARAIIESRS 279
+V I ARAI+E R+
Sbjct 266 EVDAESIEAAARAIVERRA 284
>gi|333919677|ref|YP_004493258.1| proteasome [Amycolicicoccus subflavus DQS3-9A1]
gi|333481898|gb|AEF40458.1| Proteasome [Amycolicicoccus subflavus DQS3-9A1]
Length=290
Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 167/268 (63%), Positives = 200/268 (75%), Gaps = 4/268 (1%)
Query 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN 81
LSSFTD+LR+ APELLP + G ++ A PHGTTI AL + GGVVMAGDRR+T GN
Sbjct 23 LSSFTDYLRQNAPELLPGNRPGALQVSSDVA--PHGTTITALTFEGGVVMAGDRRATMGN 80
Query 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA 141
+I+ RD+ KV+ITD+Y+A GIAGTA VAVE RL+AVELEHYEKLEGV LT GK NRLA
Sbjct 81 LIASRDIEKVFITDEYSAVGIAGTAGVAVELVRLFAVELEHYEKLEGVSLTLDGKANRLA 140
Query 142 IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201
MVRGNL AA+QGL +PL AGY+I A +P+ GRIVSFD GG E GY AVGSGSL
Sbjct 141 SMVRGNLGAALQGLAVIPLFAGYEIDAPEPERGGRIVSFDVTGGRYEEHTGYFAVGSGSL 200
Query 202 FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261
FA+S++KKLY + +R AVEALYDA+DDD+ATGGPD+VRG+FPT V+I ADGA
Sbjct 201 FARSALKKLYRRGLGQQDAVRCAVEALYDASDDDTATGGPDMVRGLFPTVVVITADGAER 260
Query 262 VPESRIAELARAIIESRSGADTFGSDGG 289
VPE + ++AR II R +T DGG
Sbjct 261 VPEEAVGDIARTIIAERD--ETTSPDGG 286
>gi|54025141|ref|YP_119383.1| putative proteasome subunit beta [Nocardia farcinica IFM 10152]
gi|81374566|sp|Q5YUX2.1|PSB_NOCFA RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|54016649|dbj|BAD58019.1| putative proteasome beta subunit [Nocardia farcinica IFM 10152]
Length=288
Score = 313 bits (803), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/276 (60%), Positives = 204/276 (74%), Gaps = 17/276 (6%)
Query 18 PAVDLSSFTDFLRRQAPELLPASISGGAPLAGGDAQL------------PHGTTIVALKY 65
P LSSFT+ LR APELL G A D PHGTTIVA+ Y
Sbjct 11 PGHALSSFTEHLRALAPELL-----GPNRFAALDGATGSSGGTGAKDIAPHGTTIVAVSY 65
Query 66 PGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEK 125
GGV++AGDRR+TQGN+++ RD+ KVYITD ++A GIAGTA +AVE RL+AVELEHYEK
Sbjct 66 RGGVLIAGDRRATQGNLLASRDMDKVYITDTFSAAGIAGTAGMAVELVRLFAVELEHYEK 125
Query 126 LEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGG 185
+EGVPLTF GK N+L+ MVR NL AA+QGL +P+L GYD A DP AGRIVS+D GG
Sbjct 126 IEGVPLTFDGKANKLSKMVRDNLPAALQGLAVVPVLVGYDERAGDPDRAGRIVSYDVVGG 185
Query 186 WNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVR 245
+ E GY AVGSGS+FAK+S+KKLY++ D LR+A+E+LYDA+DDD+ATGGPDL+R
Sbjct 186 RSEERFGYTAVGSGSMFAKTSLKKLYAKGIDQARALRIALESLYDASDDDTATGGPDLLR 245
Query 246 GIFPTAVIIDADGAVDVPESRIAELARAIIESRSGA 281
GI+PTAV+IDA+GA++VPESR+ E+AR I+ R+ A
Sbjct 246 GIYPTAVVIDAEGALEVPESRLEEIARGIVADRTAA 281
>gi|111017863|ref|YP_700835.1| proteasome beta subunit [Rhodococcus jostii RHA1]
gi|110817393|gb|ABG92677.1| proteasome beta subunit [Rhodococcus jostii RHA1]
Length=239
Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 151/225 (68%), Positives = 178/225 (80%), Gaps = 0/225 (0%)
Query 55 PHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFAR 114
PHGTTIVAL Y GGV++AGDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E R
Sbjct 8 PHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVR 67
Query 115 LYAVELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSA 174
L+AVELEHYEK+EGV LTF GK NRLA MVRGNL AAMQGL +PLL GYD+ A D A
Sbjct 68 LFAVELEHYEKIEGVQLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDEAHA 127
Query 175 GRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADD 234
GRIVS+D GG E GY AVGSGSLFAKS++KK+YS +D ++ LR A+E+LYDAADD
Sbjct 128 GRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADD 187
Query 235 DSATGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRS 279
DSATGGPDL RGI+PTAV I GAV V E +ELAR I+ R+
Sbjct 188 DSATGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERT 232
>gi|256376367|ref|YP_003100027.1| 20S proteasome subunits A and B [Actinosynnema mirum DSM 43827]
gi|302595817|sp|C6WID8.1|PSB_ACTMD RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|255920670|gb|ACU36181.1| 20S proteasome A and B subunits [Actinosynnema mirum DSM 43827]
Length=282
Score = 306 bits (783), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 156/256 (61%), Positives = 190/256 (75%), Gaps = 3/256 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM 82
SSFTDFLR QAPELLP + S G Q HGTTIVAL + GGVV+AGDRR+T GN+
Sbjct 24 SSFTDFLRAQAPELLPTARSFPE---GSVVQAAHGTTIVALTFKGGVVIAGDRRATMGNV 80
Query 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI 142
I+ RD++KV++TDDY+A GIAGTA +A+E RL+AVEL HYEK+EGV L+ GK NRL+
Sbjct 81 IAQRDMKKVFVTDDYSAVGIAGTAGIAIEIVRLFAVELRHYEKIEGVSLSLDGKANRLSG 140
Query 143 MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF 202
MV+GNL AA+ GL +PL GYD A+DP AGRIVS+D G E GYQ+VGSGSLF
Sbjct 141 MVKGNLDAALAGLAVVPLFVGYDTDAADPDRAGRIVSYDVTGARFEETLGYQSVGSGSLF 200
Query 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV 262
AKS++KKLY D + +R AVEALYDAADDDSATGGPDLVR IFP V + A+GAV +
Sbjct 201 AKSALKKLYDPDADAEGAVRAAVEALYDAADDDSATGGPDLVRRIFPVVVTVTAEGAVHL 260
Query 263 PESRIAELARAIIESR 278
PE R + +A ++E R
Sbjct 261 PEERTSAIAETVVEGR 276
>gi|134098820|ref|YP_001104481.1| 20S proteasome beta-subunit precursor [Saccharopolyspora erythraea
NRRL 2338]
gi|302595782|sp|A4FBY1.1|PSB_SACEN RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|133911443|emb|CAM01556.1| 20S proteasome beta-subunit precursor [Saccharopolyspora erythraea
NRRL 2338]
Length=284
Score = 302 bits (774), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/257 (61%), Positives = 189/257 (74%), Gaps = 5/257 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM 82
SSFTDFLR APEL+P G P+ G + PHGTTIVAL + GGV++AGDRR+T GN+
Sbjct 26 SSFTDFLRVAAPELMP----GSRPVPDGAVEAPHGTTIVALTFRGGVLLAGDRRATMGNL 81
Query 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI 142
I+ RD+ K+Y+TDDY+A GIAGTA +A+E RLYA+ELEHYEKLEGV L+ GK N+LA
Sbjct 82 IAQRDMEKLYVTDDYSAVGIAGTAGIALEMVRLYAIELEHYEKLEGVSLSLDGKANKLAT 141
Query 143 MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF 202
M+RGNL AM GL LPL AG+D+ A DP AGRIVS+D GG E GY AVGSGSLF
Sbjct 142 MLRGNLQGAMAGLAVLPLFAGFDVDADDPDRAGRIVSYDITGGRYNELGGYYAVGSGSLF 201
Query 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID-ADGAVD 261
AKS++KK + D D+ +R AVEALYDAADDD+ATGGPDL R I+P+ + I DGA
Sbjct 202 AKSALKKRFDPDADVDTAVRAAVEALYDAADDDTATGGPDLSRRIYPSIITITGTDGATR 261
Query 262 VPESRIAELARAIIESR 278
VPE R AE+A ++ R
Sbjct 262 VPEERAAEIATEVVNGR 278
>gi|291005825|ref|ZP_06563798.1| proteasome subunit beta [Saccharopolyspora erythraea NRRL 2338]
Length=281
Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 155/257 (61%), Positives = 189/257 (74%), Gaps = 5/257 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM 82
SSFTDFLR APEL+P G P+ G + PHGTTIVAL + GGV++AGDRR+T GN+
Sbjct 23 SSFTDFLRVAAPELMP----GSRPVPDGAVEAPHGTTIVALTFRGGVLLAGDRRATMGNL 78
Query 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI 142
I+ RD+ K+Y+TDDY+A GIAGTA +A+E RLYA+ELEHYEKLEGV L+ GK N+LA
Sbjct 79 IAQRDMEKLYVTDDYSAVGIAGTAGIALEMVRLYAIELEHYEKLEGVSLSLDGKANKLAT 138
Query 143 MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF 202
M+RGNL AM GL LPL AG+D+ A DP AGRIVS+D GG E GY AVGSGSLF
Sbjct 139 MLRGNLQGAMAGLAVLPLFAGFDVDADDPDRAGRIVSYDITGGRYNELGGYYAVGSGSLF 198
Query 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIID-ADGAVD 261
AKS++KK + D D+ +R AVEALYDAADDD+ATGGPDL R I+P+ + I DGA
Sbjct 199 AKSALKKRFDPDADVDTAVRAAVEALYDAADDDTATGGPDLSRRIYPSIITITGTDGATR 258
Query 262 VPESRIAELARAIIESR 278
VPE R AE+A ++ R
Sbjct 259 VPEERAAEIATEVVNGR 275
>gi|40889391|pdb|1Q5Q|H Chain H, The Rhodococcus 20s Proteasome
gi|40889392|pdb|1Q5Q|I Chain I, The Rhodococcus 20s Proteasome
gi|40889393|pdb|1Q5Q|J Chain J, The Rhodococcus 20s Proteasome
gi|40889394|pdb|1Q5Q|K Chain K, The Rhodococcus 20s Proteasome
gi|40889395|pdb|1Q5Q|L Chain L, The Rhodococcus 20s Proteasome
gi|40889396|pdb|1Q5Q|M Chain M, The Rhodococcus 20s Proteasome
gi|40889397|pdb|1Q5Q|N Chain N, The Rhodococcus 20s Proteasome
Length=235
Score = 301 bits (771), Expect = 7e-80, Method: Compositional matrix adjust.
Identities = 149/222 (68%), Positives = 176/222 (80%), Gaps = 0/222 (0%)
Query 58 TTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYA 117
TTIVAL Y GGV++AGDRR+TQGN+I+ RDV KVY+TD+Y+A GIAGTA +A+E RL+A
Sbjct 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query 118 VELEHYEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRI 177
VELEHYEK+EGVPLTF GK NRLA MVRGNL AAMQGL +PLL GYD+ A D AGRI
Sbjct 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120
Query 178 VSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSA 237
VS+D GG E GY AVGSGSLFAKS++KK+YS +D ++ LR A+E+LYDAADDDSA
Sbjct 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 180
Query 238 TGGPDLVRGIFPTAVIIDADGAVDVPESRIAELARAIIESRS 279
TGGPDL RGI+PTAV I GAV V E +ELAR I+ R+
Sbjct 181 TGGPDLTRGIYPTAVTITQAGAVHVSEETTSELARRIVAERT 222
>gi|257056206|ref|YP_003134038.1| proteasome endopeptidase complex, beta component [Saccharomonospora
viridis DSM 43017]
gi|302595783|sp|C7MWV7.1|PSB_SACVD RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|256586078|gb|ACU97211.1| proteasome endopeptidase complex, beta component [Saccharomonospora
viridis DSM 43017]
Length=289
Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 151/261 (58%), Positives = 189/261 (73%), Gaps = 4/261 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLA--GGDA-QLPHGTTIVALKYPGGVVMAGDRRSTQ 79
SSF DFL+ +AP+LLP + P GG A + PHGTTIVA + GGV++AGDRR+T
Sbjct 22 SSFIDFLKAEAPDLLPRARVENMPAVPGGGSAFEPPHGTTIVASTFNGGVLIAGDRRATT 81
Query 80 GNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINR 139
GN I+ RD+ KVY+TD Y+A GIAGTA +A+E RLY VEL HYEK+EGV L+ GK N+
Sbjct 82 GNTIASRDLEKVYVTDAYSAVGIAGTAGIALELVRLYTVELAHYEKIEGVSLSLDGKANK 141
Query 140 LAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSG 199
LA MV+GNL A+ GL LPL GYDI A DP+ AGRIVSFD GG E GY A+GSG
Sbjct 142 LANMVKGNLDGALAGLAVLPLFVGYDIDADDPKRAGRIVSFDVTGGRYEENAGYHAIGSG 201
Query 200 SLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD-G 258
+++AKSS+KKLY D D+ +R A+EALYDAADDD+ATGGPDLVR I+PT V I A+ G
Sbjct 202 AVYAKSSLKKLYDPEADADTAVRTAIEALYDAADDDTATGGPDLVRRIYPTVVTITAEHG 261
Query 259 AVDVPESRIAELARAIIESRS 279
AV +P+ A +A +++ RS
Sbjct 262 AVMLPQEETASIAESVVRERS 282
>gi|302527206|ref|ZP_07279548.1| proteasome endopeptidase complex beta subunit [Streptomyces sp.
AA4]
gi|302436101|gb|EFL07917.1| proteasome endopeptidase complex beta subunit [Streptomyces sp.
AA4]
Length=287
Score = 290 bits (741), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/258 (59%), Positives = 187/258 (73%), Gaps = 4/258 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM 82
SSF DF+R APELLPA P + PHGTTIVA+ + GGV++AGDRR+T GN+
Sbjct 25 SSFADFVRATAPELLPAR---RVPAGAAELDAPHGTTIVAVAFAGGVLIAGDRRATSGNL 81
Query 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI 142
I+ RD+ KV++TD+Y+A GIAGTA +AVE RLYAVEL HYEK+EGV L+ GK N+LA
Sbjct 82 IASRDIEKVHVTDEYSAVGIAGTAGLAVEMVRLYAVELAHYEKIEGVSLSLDGKTNKLAG 141
Query 143 MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF 202
MV+ NL AM GL +PL GYD+ A D + AGRIVS+DAAGG E GY +VGSGSLF
Sbjct 142 MVKANLEMAMAGLAVVPLFVGYDLEAEDAKHAGRIVSYDAAGGRYEEHAGYASVGSGSLF 201
Query 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA-DGAVD 261
AKSS+KKLY D D+ +R A+EALYDAADDD+A+GGPDLVR IFP + I A DGAV
Sbjct 202 AKSSLKKLYDPDADADAAVRTALEALYDAADDDTASGGPDLVRRIFPNVITITAEDGAVV 261
Query 262 VPESRIAELARAIIESRS 279
+P R +A A++ R+
Sbjct 262 LPAERTGAVAEAVVAGRA 279
>gi|296394010|ref|YP_003658894.1| 20S proteasome subunits AB [Segniliparus rotundus DSM 44985]
gi|296181157|gb|ADG98063.1| 20S proteasome A and B subunits [Segniliparus rotundus DSM 44985]
Length=275
Score = 288 bits (738), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 150/257 (59%), Positives = 187/257 (73%), Gaps = 3/257 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGAPL-AGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN 81
SSFT+ LR AP+LLP L G LPH TTIVAL Y GGV++AGDRR+T GN
Sbjct 17 SSFTEHLRASAPQLLPYRQETAMELPVSGTGSLPHATTIVALTYAGGVLIAGDRRATSGN 76
Query 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA 141
+IS +++KVY+TD+Y+A GIAGT A+A E RL+ VELEHYEK+EGV LTF+GK NRLA
Sbjct 77 LISHDEMQKVYLTDEYSAAGIAGTVAIAFELVRLFTVELEHYEKVEGVALTFSGKANRLA 136
Query 142 IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201
MVRGNL AAMQGL A+PLL G D DP+ GRIVS+DAAGG E GY +GSG L
Sbjct 137 AMVRGNLDAAMQGLAAVPLLIGLD--PQDPEPKGRIVSYDAAGGRFEESSGYHCIGSGGL 194
Query 202 FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261
FA+S++K+L+ D + LR AVEAL DA + DSAT GP+ V+ I+PTA+ I+A G +
Sbjct 195 FARSTLKRLHDPDADRATALRSAVEALADAGEADSATAGPNFVKRIWPTAIRIEASGGEE 254
Query 262 VPESRIAELARAIIESR 278
VPES IAE+A A++E+R
Sbjct 255 VPESEIAEVAEAVLEAR 271
>gi|317507302|ref|ZP_07965044.1| proteasome A-type and B-type [Segniliparus rugosus ATCC BAA-974]
gi|316254405|gb|EFV13733.1| proteasome A-type and B-type [Segniliparus rugosus ATCC BAA-974]
Length=279
Score = 288 bits (737), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 149/258 (58%), Positives = 194/258 (76%), Gaps = 5/258 (1%)
Query 23 SSFTDFLRRQAPELLPASISGGA--PLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQG 80
SSFT+ LR AP LLP P+AG + LPHGTTIVAL Y GGV++AGDRR+T G
Sbjct 21 SSFTEHLRANAPHLLPFREDRAVEFPVAGAGS-LPHGTTIVALTYAGGVLIAGDRRATSG 79
Query 81 NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL 140
N+IS +++KVY+TD+Y+A GIAGT A+A E RL+AVELEHYEK+EGV LTF+GK NRL
Sbjct 80 NLISHDEMQKVYLTDEYSAAGIAGTVAIAFELVRLFAVELEHYEKVEGVALTFSGKANRL 139
Query 141 AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS 200
A MVRGNL AAMQGL A+PLL G D ++P+ GRIVS+DAAGG E+ GY ++GSG
Sbjct 140 AAMVRGNLEAAMQGLAAVPLLVGLDPDDAEPK--GRIVSYDAAGGRFEEQSGYHSIGSGG 197
Query 201 LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV 260
LFA+S++K+L+ D + LR AVEAL DA ++DSAT GP+ V+ ++PTA+ I+A G
Sbjct 198 LFARSTLKRLHDPQADRTAALRAAVEALADAGEEDSATAGPNFVKRVWPTAIRIEASGGE 257
Query 261 DVPESRIAELARAIIESR 278
+VPE+ I E+A A++E+R
Sbjct 258 EVPEAEIGEVAEAVLEAR 275
>gi|300786771|ref|YP_003767062.1| proteasome beta subunit [Amycolatopsis mediterranei U32]
gi|299796285|gb|ADJ46660.1| proteasome beta subunit [Amycolatopsis mediterranei U32]
gi|340528255|gb|AEK43460.1| proteasome subunit beta [Amycolatopsis mediterranei S699]
Length=284
Score = 286 bits (731), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 150/245 (62%), Positives = 184/245 (76%), Gaps = 6/245 (2%)
Query 23 SSFTDFLRRQAPELLPAS-ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN 81
SSF+DFLR QAPELLP +S GA G +PHGTTIVA + GV++AGDRR+T GN
Sbjct 22 SSFSDFLRVQAPELLPERRVSPGAAELG----IPHGTTIVACTFASGVLIAGDRRATSGN 77
Query 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA 141
+I+ RD+ KV++TD+Y+A GIAGTA +AVE RLYAVEL HYEK+EGV L+ GK N+LA
Sbjct 78 LIASRDIEKVHVTDEYSAVGIAGTAGLAVEMVRLYAVELAHYEKIEGVSLSLDGKTNKLA 137
Query 142 IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201
MV+ NL AM GL A+PL GYD+ A D + AGRIVS+DAAGG E GY +GSGSL
Sbjct 138 GMVKANLEMAMAGLAAIPLFVGYDLEAEDAKHAGRIVSYDAAGGRYEENGGYAGIGSGSL 197
Query 202 FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDAD-GAV 260
FAKS++KKL+ D + +RVAVEALYDAADDD+A+GGPDLVR IFP+ V I A+ GAV
Sbjct 198 FAKSALKKLHDPDADVEGAVRVAVEALYDAADDDTASGGPDLVRRIFPSVVTITAERGAV 257
Query 261 DVPES 265
+ ES
Sbjct 258 QLSES 262
>gi|326382282|ref|ZP_08203974.1| 20S proteasome A and subunit Bs [Gordonia neofelifaecis NRRL
B-59395]
gi|326199012|gb|EGD56194.1| 20S proteasome A and subunit Bs [Gordonia neofelifaecis NRRL
B-59395]
Length=285
Score = 283 bits (724), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 160/265 (61%), Positives = 194/265 (74%), Gaps = 6/265 (2%)
Query 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDA-QLPHGTTIVALKYPGGVVMAGDRRSTQG 80
+SSFT++LR AP+ LP +++ +A G Q+PHGTTIVA+ YPGGV++AGDRR+T G
Sbjct 18 ISSFTEYLRVHAPDRLPQNMT----VANGSVEQIPHGTTIVAVGYPGGVILAGDRRATMG 73
Query 81 NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL 140
N+I+ RDV+KVY+TD++TA GIAGTA +A+E RL+AVELEHYEK+EGVPLT GK+ RL
Sbjct 74 NLIATRDVQKVYVTDEFTAAGIAGTAGIAIEMVRLFAVELEHYEKIEGVPLTLDGKVARL 133
Query 141 AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS 200
A MVR NL AAMQGL A+PLL G+D DP GRI SFD AG + E GY A+GSGS
Sbjct 134 ATMVRSNLGAAMQGLAAVPLLVGFDAEG-DPDDRGRIFSFDVAGSRHEETAGYDAIGSGS 192
Query 201 LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV 260
+FAKSS+KKLY L AVEALYDAADDDSATGGPDLVR IFPTA + ADGA
Sbjct 193 VFAKSSLKKLYRGDLTAAEALATAVEALYDAADDDSATGGPDLVRRIFPTAARVTADGAD 252
Query 261 DVPESRIAELARAIIESRSGADTFG 285
V ES I A +++ R A T G
Sbjct 253 MVAESEIEAAAESVVARRRDAATSG 277
>gi|324999221|ref|ZP_08120333.1| proteasome subunit beta [Pseudonocardia sp. P1]
Length=298
Score = 278 bits (710), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 145/262 (56%), Positives = 184/262 (71%), Gaps = 6/262 (2%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLA--GGDAQ----LPHGTTIVALKYPGGVVMAGDRR 76
SF++F+ AP L+P + P++ GG A +PHGTTIVAL + GGVV+AGDRR
Sbjct 28 QSFSEFVGATAPHLMPGAGVTPQPVSAPGGSAADALGVPHGTTIVALTFSGGVVIAGDRR 87
Query 77 STQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGK 136
+T GN+I+ RD+ KV++TD ++A GIAG+A +A+E RL+ V+LEHYEKLEGVPL+ GK
Sbjct 88 ATAGNVIAQRDIEKVFVTDHHSAVGIAGSAGIALEMVRLFGVDLEHYEKLEGVPLSLDGK 147
Query 137 INRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAV 196
N+LA M+R NL AAMQG + +PL AG+D DP AGRIV+FD GG E G+ AV
Sbjct 148 ANKLAGMIRQNLGAAMQGFVVVPLFAGFDPTVDDPGRAGRIVTFDPTGGRYDENLGFHAV 207
Query 197 GSGSLFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDA 256
GSGS+FAKSS+KKLY D D +R A+EALYDAADDD+ATGGPD VR I+P V I A
Sbjct 208 GSGSVFAKSSLKKLYDPAADLDGAVRTAIEALYDAADDDTATGGPDTVRRIYPVVVGITA 267
Query 257 DGAVDVPESRIAELARAIIESR 278
DGA ES IA + +I R
Sbjct 268 DGAARREESEIASVVERVIAGR 289
>gi|117928395|ref|YP_872946.1| proteasome subunit beta [Acidothermus cellulolyticus 11B]
gi|302595815|sp|A0LU50.1|PSB_ACIC1 RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|117648858|gb|ABK52960.1| proteasome endopeptidase complex, beta component [Acidothermus
cellulolyticus 11B]
Length=290
Score = 275 bits (703), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 135/257 (53%), Positives = 179/257 (70%), Gaps = 3/257 (1%)
Query 22 LSSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGN 81
++SF +FL QAP+LLP + P G ++PHGTTIVA+ Y GGVVMAGDRR+T GN
Sbjct 25 ITSFVEFLALQAPDLLPGRLQ--MPAGGQPPEVPHGTTIVAVAYQGGVVMAGDRRATMGN 82
Query 82 MISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLA 141
+I+ RD+ KV+ TD+++ GIAG+A +A+E RL+ VELEHYEKL+G L+ GK NRLA
Sbjct 83 VIAQRDIEKVFQTDEHSCVGIAGSAGIALEVVRLFQVELEHYEKLQGTTLSLEGKANRLA 142
Query 142 IMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSL 201
+M+R NL A+QGL +PL AGYD+ A DPQ AGRI SFD GG EE + AVGSGS
Sbjct 143 MMIRANLPMALQGLAVVPLFAGYDLFADDPQRAGRIFSFDVTGG-RYEEHSFHAVGSGST 201
Query 202 FAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVD 261
FA+ ++KKL+ D +R +EALYDAADDDSATGGPDL R I+P ++DA+G
Sbjct 202 FARGALKKLFRDDFDEPHAVRTCIEALYDAADDDSATGGPDLTRRIYPVVAVVDANGFRR 261
Query 262 VPESRIAELARAIIESR 278
+ + + + +I +R
Sbjct 262 LADDTVGGVVEQVIAAR 278
>gi|291301921|ref|YP_003513199.1| 20S proteasome subunits A/B [Stackebrandtia nassauensis DSM 44728]
gi|302595786|sp|D3Q557.1|PSB_STANL RecName: Full=Proteasome subunit beta; AltName: Full=20S proteasome
beta subunit; AltName: Full=Proteasome core protein PrcB;
Flags: Precursor
gi|290571141|gb|ADD44106.1| 20S proteasome A and B subunits [Stackebrandtia nassauensis DSM
44728]
Length=279
Score = 273 bits (697), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 147/258 (57%), Positives = 177/258 (69%), Gaps = 7/258 (2%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDA--QLPHGTTIVALKYPGGVVMAGDRRSTQG 80
SSF + L APELLP G PL GD PHGTTIVAL+ GVVMAGDRR+TQG
Sbjct 21 SSFVELLGSVAPELLP----GRRPLPPGDMGDAAPHGTTIVALRCNEGVVMAGDRRATQG 76
Query 81 NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL 140
NMIS RD++KV+ D Y+ GIAGTA + VE RL+ ELEH+EKLEG L+ GK N+L
Sbjct 77 NMISLRDIQKVFPADAYSLIGIAGTAGLGVEMIRLFQAELEHFEKLEGNALSLHGKANKL 136
Query 141 AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS 200
A M+RGNL AMQGL LPL AG+D A D SAGRI S+D GG EE Y A+GSGS
Sbjct 137 ANMIRGNLGIAMQGLAVLPLFAGFDTDAPDAASAGRIFSYDVVGGI-YEEREYDAIGSGS 195
Query 201 LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV 260
+FAKS++KK + D R+A+EALYDAADDDSATGGPDL R +FPT ADGA
Sbjct 196 IFAKSALKKRFQSEVDATEATRLAIEALYDAADDDSATGGPDLTRKLFPTVFTATADGAK 255
Query 261 DVPESRIAELARAIIESR 278
VP++ I ++RA++ +R
Sbjct 256 RVPDAEIEAVSRAVVAAR 273
>gi|145593571|ref|YP_001157868.1| 20S proteasome subunits A and B [Salinispora tropica CNB-440]
gi|302595708|sp|A4X3P0.1|PSB1_SALTO RecName: Full=Proteasome subunit beta 1; AltName: Full=20S proteasome
beta subunit 1; AltName: Full=Proteasome core protein
PrcB 1; Flags: Precursor
gi|145302908|gb|ABP53490.1| 20S proteasome, A and B subunits [Salinispora tropica CNB-440]
Length=282
Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 138/245 (57%), Positives = 176/245 (72%), Gaps = 5/245 (2%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM 82
SSF + L+ P LLPA + A + PHGTTIVA + GGV++AGDRR+T GN+
Sbjct 19 SSFVELLKEYDPTLLPAKRA-----AETFGEAPHGTTIVAATFAGGVLLAGDRRTTMGNL 73
Query 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI 142
I+GRDV K+ ITDDY+A G AGT ++++ RL+ VELEHYEK+EGVPL+ GK NRLA
Sbjct 74 IAGRDVDKLTITDDYSAVGFAGTVGISIDMTRLFVVELEHYEKIEGVPLSLEGKSNRLAA 133
Query 143 MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF 202
+V+GNL A G++++PL GYD+ ASDP AGRIVSFDA G E+ GYQ++GSGS F
Sbjct 134 IVKGNLPMANAGMVSIPLFIGYDLEASDPARAGRIVSFDAIGARYEEKSGYQSIGSGSPF 193
Query 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV 262
AKSS+KKL+ +D + L +EALYDAADDDSATGGPD+VR IFPTA+ I A+GA
Sbjct 194 AKSSLKKLHDPGSDDAATLSALIEALYDAADDDSATGGPDMVRRIFPTAIRITAEGAYRY 253
Query 263 PESRI 267
E +
Sbjct 254 TEEEL 258
>gi|145559628|gb|ABP73653.1| SalI [Salinispora tropica]
Length=278
Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 138/245 (57%), Positives = 176/245 (72%), Gaps = 5/245 (2%)
Query 23 SSFTDFLRRQAPELLPASISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNM 82
SSF + L+ P LLPA + A + PHGTTIVA + GGV++AGDRR+T GN+
Sbjct 15 SSFVELLKEYDPTLLPAKRA-----AETFGEAPHGTTIVAATFAGGVLLAGDRRTTMGNL 69
Query 83 ISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRLAI 142
I+GRDV K+ ITDDY+A G AGT ++++ RL+ VELEHYEK+EGVPL+ GK NRLA
Sbjct 70 IAGRDVDKLTITDDYSAVGFAGTVGISIDMTRLFVVELEHYEKIEGVPLSLEGKSNRLAA 129
Query 143 MVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLF 202
+V+GNL A G++++PL GYD+ ASDP AGRIVSFDA G E+ GYQ++GSGS F
Sbjct 130 IVKGNLPMANAGMVSIPLFIGYDLEASDPARAGRIVSFDAIGARYEEKSGYQSIGSGSPF 189
Query 203 AKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAVDV 262
AKSS+KKL+ +D + L +EALYDAADDDSATGGPD+VR IFPTA+ I A+GA
Sbjct 190 AKSSLKKLHDPGSDDAATLSALIEALYDAADDDSATGGPDMVRRIFPTAIRITAEGAYRY 249
Query 263 PESRI 267
E +
Sbjct 250 TEEEL 254
>gi|296139866|ref|YP_003647109.1| 20S proteasome subunits A and B [Tsukamurella paurometabola DSM
20162]
gi|296028000|gb|ADG78770.1| 20S proteasome A and B subunits [Tsukamurella paurometabola DSM
20162]
Length=273
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 140/262 (54%), Positives = 187/262 (72%), Gaps = 13/262 (4%)
Query 23 SSFTDFLRRQAPELLPASISG--GAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQG 80
SSF + L APE LP ++G GAP +PHGTTIVA+K+ GGV++AGDRR+T G
Sbjct 17 SSFVEHLAAVAPEALPGRVAGFDGAP------DVPHGTTIVAIKFDGGVLIAGDRRATMG 70
Query 81 NMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYEKLEGVPLTFAGKINRL 140
++I+ RD+ K ++TDD TA GIAGTA +A + +L+ VELEHYEK+EGVPLTF GK NRL
Sbjct 71 HLIAQRDITKTFVTDDLTAVGIAGTAGIAKQIVKLFTVELEHYEKIEGVPLTFDGKANRL 130
Query 141 AIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGS 200
MVR N AA+QGL+A+PLL G+D D + GRIVS+D G W+ +E Y ++GSGS
Sbjct 131 GGMVRSNFGAALQGLVAVPLLVGFD----DADARGRIVSYDVTGDWH-DEVDYHSIGSGS 185
Query 201 LFAKSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADGAV 260
+AKSS+KK + D D L VA EAL+DAADDD+ATGGPD++R ++PTA+ I +DGAV
Sbjct 186 AWAKSSIKKRFRHGLDADGALDVAAEALFDAADDDTATGGPDVLRNLYPTAIAITSDGAV 245
Query 261 DVPESRIAELARAIIESRSGAD 282
+V E+ ++ +I RS A+
Sbjct 246 EVAEASVSAATERVIARRSEAN 267
Lambda K H
0.315 0.134 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 477082076112
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40