BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2111c
Length=64
Score E
Sequences producing significant alignments: (Bits) Value
gi|167967478|ref|ZP_02549755.1| hypothetical protein MtubH3_0536... 124 4e-27
gi|15609248|ref|NP_216627.1| hypothetical protein Rv2111c [Mycob... 123 7e-27
gi|310689793|pdb|3M9D|G Chain G, Crystal Structure Of The Prokar... 122 1e-26
gi|254819643|ref|ZP_05224644.1| hypothetical protein MintA_06959... 107 4e-22
gi|15827686|ref|NP_301949.1| hypothetical protein ML1321 [Mycoba... 107 5e-22
gi|145223663|ref|YP_001134341.1| hypothetical protein Mflv_3076 ... 107 6e-22
gi|120404422|ref|YP_954251.1| hypothetical protein Mvan_3450 [My... 107 7e-22
gi|118472672|ref|YP_888186.1| hypothetical protein MSMEG_3896 [M... 106 1e-21
gi|312139721|ref|YP_004007057.1| hypothetical protein REQ_23270 ... 103 9e-21
gi|326382281|ref|ZP_08203973.1| hypothetical protein SCNU_05046 ... 103 1e-20
gi|54025142|ref|YP_119384.1| hypothetical protein nfa31730 [Noca... 102 2e-20
gi|226359997|ref|YP_002777775.1| proteasome accessory factor [Rh... 101 4e-20
gi|240171538|ref|ZP_04750197.1| hypothetical protein MkanA1_1964... 100 6e-20
gi|333990434|ref|YP_004523048.1| hypothetical protein JDM601_179... 100 8e-20
gi|111017864|ref|YP_700836.1| hypothetical protein RHA1_ro00845 ... 99.4 1e-19
gi|226306662|ref|YP_002766622.1| proteasome accessory factor [Rh... 99.4 2e-19
gi|342859804|ref|ZP_08716457.1| Prokaryotic ubiquitin-like prote... 99.0 2e-19
gi|296139865|ref|YP_003647108.1| hypothetical protein Tpau_2158 ... 99.0 2e-19
gi|183983085|ref|YP_001851376.1| hypothetical protein MMAR_3086 ... 99.0 2e-19
gi|333919676|ref|YP_004493257.1| ubiquitin-like protein Pup [Amy... 97.8 4e-19
gi|41407934|ref|NP_960770.1| hypothetical protein MAP1836c [Myco... 97.8 5e-19
gi|254775072|ref|ZP_05216588.1| hypothetical protein MaviaA2_104... 97.4 5e-19
gi|118617842|ref|YP_906174.1| hypothetical protein MUL_2332 [Myc... 97.4 6e-19
gi|296165183|ref|ZP_06847730.1| conserved hypothetical protein [... 96.7 1e-18
gi|119869224|ref|YP_939176.1| hypothetical protein Mkms_3192 [My... 89.0 2e-16
gi|169629257|ref|YP_001702906.1| hypothetical protein MAB_2171 [... 88.2 4e-16
gi|310689772|pdb|3M91|B Chain B, Crystal Structure Of The Prokar... 85.5 2e-15
gi|257056207|ref|YP_003134039.1| hypothetical protein Svir_22040... 85.5 3e-15
gi|300786772|ref|YP_003767063.1| hypothetical protein AMED_4895 ... 84.7 4e-15
gi|343927938|ref|ZP_08767404.1| prokaryotic ubiquitin-like prote... 84.3 5e-15
gi|262202388|ref|YP_003273596.1| hypothetical protein Gbro_2462 ... 84.0 6e-15
gi|302527205|ref|ZP_07279547.1| conserved hypothetical protein [... 80.9 6e-14
gi|258653141|ref|YP_003202297.1| hypothetical protein Namu_2970 ... 75.5 3e-12
gi|134098819|ref|YP_001104480.1| hypothetical protein SACE_2250 ... 73.6 9e-12
gi|324999222|ref|ZP_08120334.1| Prokaryotic ubiquitin-like prote... 73.6 1e-11
gi|256376366|ref|YP_003100026.1| hypothetical protein Amir_2240 ... 71.2 4e-11
gi|331697109|ref|YP_004333348.1| Ubiquitin-like protein pup [Pse... 69.7 1e-10
gi|317507303|ref|ZP_07965045.1| hypothetical protein HMPREF9336_... 65.9 2e-09
gi|302561548|ref|ZP_07313890.1| conserved hypothetical protein [... 65.1 3e-09
gi|145594774|ref|YP_001159071.1| hypothetical protein Strop_2243... 65.1 4e-09
gi|117928394|ref|YP_872945.1| hypothetical protein Acel_1187 [Ac... 63.9 7e-09
gi|288917496|ref|ZP_06411861.1| protein of unknown function DUF7... 63.9 8e-09
gi|284022116|sp|A4X743.2|PUP_SALTO RecName: Full=Prokaryotic ubi... 63.5 9e-09
gi|289772641|ref|ZP_06532019.1| predicted protein [Streptomyces ... 63.5 9e-09
gi|302550297|ref|ZP_07302639.1| predicted protein [Streptomyces ... 63.5 9e-09
gi|86741319|ref|YP_481719.1| hypothetical protein Francci3_2628 ... 63.5 1e-08
gi|302533524|ref|ZP_07285866.1| conserved hypothetical protein [... 63.5 1e-08
gi|345013959|ref|YP_004816313.1| Ubiquitin-like protein pup [Str... 63.2 1e-08
gi|182439651|ref|YP_001827370.1| hypothetical protein SGR_5858 [... 63.2 1e-08
gi|158316643|ref|YP_001509151.1| hypothetical protein Franean1_4... 63.2 1e-08
>gi|167967478|ref|ZP_02549755.1| hypothetical protein MtubH3_05362 [Mycobacterium tuberculosis
H37Ra]
gi|253798827|ref|YP_003031828.1| hypothetical protein TBMG_01869 [Mycobacterium tuberculosis KZN
1435]
gi|254232271|ref|ZP_04925598.1| conserved hypothetical protein [Mycobacterium tuberculosis C]
18 more sequence titles
Length=71
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 8 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 67
Query 61 KGGQ 64
KGGQ
Sbjct 68 KGGQ 71
>gi|15609248|ref|NP_216627.1| hypothetical protein Rv2111c [Mycobacterium tuberculosis H37Rv]
gi|15841603|ref|NP_336640.1| hypothetical protein MT2171 [Mycobacterium tuberculosis CDC1551]
gi|31793291|ref|NP_855784.1| hypothetical protein Mb2135c [Mycobacterium bovis AF2122/97]
63 more sequence titles
Length=64
Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 64/64 (100%), Positives = 64/64 (100%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|310689793|pdb|3M9D|G Chain G, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal Atpase
Mpa Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
gi|310689794|pdb|3M9D|H Chain H, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal Atpase
Mpa Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
gi|310689795|pdb|3M9D|I Chain I, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal Atpase
Mpa Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
gi|310689802|pdb|3M9D|P Chain P, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal Atpase
Mpa Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
gi|310689803|pdb|3M9D|Q Chain Q, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal Atpase
Mpa Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
gi|310689804|pdb|3M9D|R Chain R, Crystal Structure Of The Prokaryotic Ubiquintin-Like
Protein Pup Complexed With The Hexameric Proteasomal Atpase
Mpa Which Includes The Amino Terminal Coiled Coil Domain And
The Inter Domain
Length=68
Score = 122 bits (307), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/64 (99%), Positives = 64/64 (100%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 5 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 64
Query 61 KGGQ 64
KGG+
Sbjct 65 KGGE 68
>gi|254819643|ref|ZP_05224644.1| hypothetical protein MintA_06959 [Mycobacterium intracellulare
ATCC 13950]
Length=64
Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 61/64 (96%), Positives = 62/64 (97%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGD+DD AGSTAAGQERREKL EETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDEDDFAGSTAAGQERREKLAEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|15827686|ref|NP_301949.1| hypothetical protein ML1321 [Mycobacterium leprae TN]
gi|221230163|ref|YP_002503579.1| hypothetical protein MLBr_01321 [Mycobacterium leprae Br4923]
gi|81554632|sp|Q9ZBE0.1|PUP_MYCLE RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|284022052|sp|B8ZRF2.1|PUP_MYCLB RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|4200273|emb|CAA22932.1| hypothetical protein MLCB2533.18 [Mycobacterium leprae]
gi|13093237|emb|CAC31702.1| conserved hypothetical protein [Mycobacterium leprae]
gi|219933270|emb|CAR71416.1| conserved hypothetical protein [Mycobacterium leprae Br4923]
Length=63
Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 56/64 (88%), Positives = 59/64 (93%), Gaps = 1/64 (1%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQT+RGGGG DDD+ ST+ GQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTRRGGGG-DDDEFTSSTSVGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 59
Query 61 KGGQ 64
KGGQ
Sbjct 60 KGGQ 63
>gi|145223663|ref|YP_001134341.1| hypothetical protein Mflv_3076 [Mycobacterium gilvum PYR-GCK]
gi|315443989|ref|YP_004076868.1| hypothetical protein Mspyr1_23910 [Mycobacterium sp. Spyr1]
gi|284022051|sp|A4TB63.1|PUP_MYCGI RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|145216149|gb|ABP45553.1| protein of unknown function DUF797 [Mycobacterium gilvum PYR-GCK]
gi|315262292|gb|ADT99033.1| Protein of unknown function (DUF797) [Mycobacterium sp. Spyr1]
Length=64
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/64 (96%), Positives = 62/64 (97%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGG+DDD GSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGEDDDPTGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|120404422|ref|YP_954251.1| hypothetical protein Mvan_3450 [Mycobacterium vanbaalenii PYR-1]
gi|284022058|sp|A1TAP5.1|PUP_MYCVP RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|119957240|gb|ABM14245.1| protein of unknown function DUF797 [Mycobacterium vanbaalenii
PYR-1]
Length=64
Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 60/64 (94%), Positives = 63/64 (99%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGG+DDD+ GSTAAGQERREKLT+ETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGEDDDLTGSTAAGQERREKLTDETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|118472672|ref|YP_888186.1| hypothetical protein MSMEG_3896 [Mycobacterium smegmatis str.
MC2 155]
gi|259546730|sp|A0QZ48.1|PUP_MYCS2 RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|2293462|gb|AAC45613.1| unknown protein [Mycobacterium smegmatis str. MC2 155]
gi|118173959|gb|ABK74855.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=64
Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/64 (93%), Positives = 63/64 (99%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGG+DDD+ G++AAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGEDDDLPGASAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|312139721|ref|YP_004007057.1| hypothetical protein REQ_23270 [Rhodococcus equi 103S]
gi|325676829|ref|ZP_08156502.1| hypothetical protein HMPREF0724_14285 [Rhodococcus equi ATCC
33707]
gi|311889060|emb|CBH48373.1| conserved hypothetical protein [Rhodococcus equi 103S]
gi|325552377|gb|EGD22066.1| hypothetical protein HMPREF0724_14285 [Rhodococcus equi ATCC
33707]
Length=64
Score = 103 bits (257), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 55/64 (86%), Positives = 56/64 (88%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKR GGG DDD G AAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRAGGGDDDDAPIGEGAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|326382281|ref|ZP_08203973.1| hypothetical protein SCNU_05046 [Gordonia neofelifaecis NRRL
B-59395]
gi|326199011|gb|EGD56193.1| hypothetical protein SCNU_05046 [Gordonia neofelifaecis NRRL
B-59395]
Length=63
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 57/64 (90%), Positives = 57/64 (90%), Gaps = 1/64 (1%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGG DDDD G AAGQERREKLT ETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGS-DDDDAIGGGAAGQERREKLTGETDDLLDEIDDVLEENAEDFVRAYVQ 59
Query 61 KGGQ 64
KGGQ
Sbjct 60 KGGQ 63
>gi|54025142|ref|YP_119384.1| hypothetical protein nfa31730 [Nocardia farcinica IFM 10152]
gi|81374565|sp|Q5YUX1.1|PUP_NOCFA RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|54016650|dbj|BAD58020.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=64
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/64 (85%), Positives = 57/64 (90%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKR GGG +D+ AG AAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRTGGGDEDEGSAGPEAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|226359997|ref|YP_002777775.1| proteasome accessory factor [Rhodococcus opacus B4]
gi|75491632|sp|Q53078.1|PUP1_RHOER RecName: Full=Prokaryotic ubiquitin-like protein Pup 1; AltName:
Full=Bacterial ubiquitin-like modifier 1
gi|284022062|sp|C1ASP8.1|PUP_RHOOB RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|847768|gb|AAC45739.1| ORF7(1); similar to ORF7(2) of Rhodococcus erythropolis NI86/21,
encoded by Genbank Accession Number U26422
gi|226238482|dbj|BAH48830.1| putative proteasome accessory factor [Rhodococcus opacus B4]
Length=64
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 54/64 (85%), Positives = 56/64 (88%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKR GGG +DD G AAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRTGGGDEDDTPGGDGAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|240171538|ref|ZP_04750197.1| hypothetical protein MkanA1_19646 [Mycobacterium kansasii ATCC
12478]
Length=64
Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/64 (97%), Positives = 62/64 (97%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDDDD AGSTAAGQERREKL EETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDDDDFAGSTAAGQERREKLAEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|333990434|ref|YP_004523048.1| hypothetical protein JDM601_1794 [Mycobacterium sp. JDM601]
gi|333486402|gb|AEF35794.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=64
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 59/64 (93%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGD+DD G AAGQERREKLT ETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDEDDPTGPAAAGQERREKLTGETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|111017864|ref|YP_700836.1| hypothetical protein RHA1_ro00845 [Rhodococcus jostii RHA1]
gi|123341023|sp|Q0SIF8.1|PUP_RHOSR RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|110817394|gb|ABG92678.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=64
Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 53/64 (83%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKR GGG +DD AAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRTGGGDEDDTPGADGAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|226306662|ref|YP_002766622.1| proteasome accessory factor [Rhodococcus erythropolis PR4]
gi|229493589|ref|ZP_04387374.1| ubiquitin analog Pup [Rhodococcus erythropolis SK121]
gi|75491636|sp|Q53082.1|PUP2_RHOER RecName: Full=Prokaryotic ubiquitin-like protein Pup 2; AltName:
Full=Bacterial ubiquitin-like modifier 2
gi|284022061|sp|C0ZZU8.1|PUP_RHOE4 RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|847773|gb|AAC45735.1| ORF7(2); similar to ORF7(1) of Rhodococcus erythropolis NI86/21,
encoded by Genbank Accession Number U26421
gi|226185779|dbj|BAH33883.1| putative proteasome accessory factor [Rhodococcus erythropolis
PR4]
gi|229319550|gb|EEN85386.1| ubiquitin analog Pup [Rhodococcus erythropolis SK121]
Length=64
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/64 (82%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQT+R GGG DD+ G +AGQERREKL ETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTQRAGGGEDDETTGGDGSAGQERREKLAAETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|342859804|ref|ZP_08716457.1| Prokaryotic ubiquitin-like protein Pup [Mycobacterium colombiense
CECT 3035]
gi|342132936|gb|EGT86156.1| Prokaryotic ubiquitin-like protein Pup [Mycobacterium colombiense
CECT 3035]
Length=64
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 61/64 (96%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGG D+DD+A STAAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGDDEDDVASSTAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|296139865|ref|YP_003647108.1| hypothetical protein Tpau_2158 [Tsukamurella paurometabola DSM
20162]
gi|296027999|gb|ADG78769.1| protein of unknown function DUF797 [Tsukamurella paurometabola
DSM 20162]
Length=64
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/64 (80%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQ KRGGGG +DD + AGQER EKLT+ETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQVKRGGGGDEDDATGAPSGAGQERMEKLTDETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGG+
Sbjct 61 KGGE 64
>gi|183983085|ref|YP_001851376.1| hypothetical protein MMAR_3086 [Mycobacterium marinum M]
gi|284022053|sp|B2HFV7.1|PUP_MYCMM RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|183176411|gb|ACC41521.1| conserved protein [Mycobacterium marinum M]
Length=64
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/64 (90%), Positives = 62/64 (97%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDD+D+ G+TAAGQERREKL ++TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDDEDVTGTTAAGQERREKLAQDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|333919676|ref|YP_004493257.1| ubiquitin-like protein Pup [Amycolicicoccus subflavus DQS3-9A1]
gi|333481897|gb|AEF40457.1| Prokaryotic ubiquitin-like protein Pup [Amycolicicoccus subflavus
DQS3-9A1]
Length=64
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/64 (80%), Positives = 54/64 (85%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQ+Q KR GGG D+ G+ AGQERREKL EETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQDQVKRKGGGDGDESAEGAAPAGQERREKLAEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|41407934|ref|NP_960770.1| hypothetical protein MAP1836c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118463394|ref|YP_881602.1| hypothetical protein MAV_2403 [Mycobacterium avium 104]
gi|81414119|sp|Q73YW7.1|PUP_MYCPA RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|284022047|sp|A0QFB4.1|PUP_MYCA1 RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|41396288|gb|AAS04153.1| hypothetical protein MAP_1836c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|118164681|gb|ABK65578.1| conserved hypothetical protein [Mycobacterium avium 104]
gi|336461988|gb|EGO40837.1| ubiquitin-like protein Pup [Mycobacterium avium subsp. paratuberculosis
S397]
Length=64
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGG D+DD A STAAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGDDEDDFASSTAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|254775072|ref|ZP_05216588.1| hypothetical protein MaviaA2_10421 [Mycobacterium avium subsp.
avium ATCC 25291]
Length=79
Score = 97.4 bits (241), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 58/64 (91%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGG D+DD A STAAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 16 MAQEQTKRGGGGDDEDDFASSTAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 75
Query 61 KGGQ 64
KGGQ
Sbjct 76 KGGQ 79
>gi|118617842|ref|YP_906174.1| hypothetical protein MUL_2332 [Mycobacterium ulcerans Agy99]
gi|284022057|sp|A0PQT4.1|PUP_MYCUA RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|118569952|gb|ABL04703.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=64
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/64 (88%), Positives = 62/64 (97%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDD+D+ G+TAAGQERR+KL ++TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDDEDVTGTTAAGQERRKKLAQDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|296165183|ref|ZP_06847730.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295899372|gb|EFG78831.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=64
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/64 (94%), Positives = 61/64 (96%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGGDDDD A STAAGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGDDDDFADSTAAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|119869224|ref|YP_939176.1| hypothetical protein Mkms_3192 [Mycobacterium sp. KMS]
gi|126435721|ref|YP_001071412.1| hypothetical protein Mjls_3142 [Mycobacterium sp. JLS]
gi|284022054|sp|A3Q194.1|PUP_MYCSJ RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|284022055|sp|A1UHS8.1|PUP_MYCSK RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|302595797|sp|P0CG93.1|PUP_MYCSS RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|119695313|gb|ABL92386.1| protein of unknown function DUF797 [Mycobacterium sp. KMS]
gi|126235521|gb|ABN98921.1| protein of unknown function DUF797 [Mycobacterium sp. JLS]
Length=64
Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/64 (90%), Positives = 60/64 (94%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGGG+DDD++G AGQERREKL EETDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGGEDDDLSGGAGAGQERREKLAEETDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|169629257|ref|YP_001702906.1| hypothetical protein MAB_2171 [Mycobacterium abscessus ATCC 19977]
gi|284022048|sp|B1MAI1.1|PUP_MYCA9 RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|169241224|emb|CAM62252.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=64
Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 54/64 (85%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGG DDD AGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGDDDDVTDLGGPAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|310689772|pdb|3M91|B Chain B, Crystal Structure Of The Prokaryotic Ubiquitin-Like
Protein (Pup) Complexed With The Amino Terminal Coiled Coil
Of The Mycobacterium Tuberculosis Proteasomal Atpase Mpa
gi|310689774|pdb|3M91|D Chain D, Crystal Structure Of The Prokaryotic Ubiquitin-Like
Protein (Pup) Complexed With The Amino Terminal Coiled Coil
Of The Mycobacterium Tuberculosis Proteasomal Atpase Mpa
Length=44
Score = 85.5 bits (210), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/44 (98%), Positives = 44/44 (100%), Gaps = 0/44 (0%)
Query 21 STAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
STAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGG+
Sbjct 1 STAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGE 44
>gi|257056207|ref|YP_003134039.1| hypothetical protein Svir_22040 [Saccharomonospora viridis DSM
43017]
gi|256586079|gb|ACU97212.1| Protein of unknown function (DUF797) [Saccharomonospora viridis
DSM 43017]
Length=63
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/64 (69%), Positives = 53/64 (83%), Gaps = 1/64 (1%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQE+ ++ GGG D DD+ + AGQERREK+ E+ D +LDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQERIEKHGGG-DSDDVEAAAPAGQERREKVGEDVDTILDEIDDVLEENAEDFVRAYVQ 59
Query 61 KGGQ 64
KGG+
Sbjct 60 KGGE 63
>gi|300786772|ref|YP_003767063.1| hypothetical protein AMED_4895 [Amycolatopsis mediterranei U32]
gi|299796286|gb|ADJ46661.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340528256|gb|AEK43461.1| Prokaryotic ubiquitin-like protein Pup [Amycolatopsis mediterranei
S699]
Length=64
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 44/64 (69%), Positives = 53/64 (83%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQE+ ++ GGG D++ + AAGQERREKL E+ D +LDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEKIEKHGGGDSDEEFDDTGAAGQERREKLGEDVDTILDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGG+
Sbjct 61 KGGE 64
>gi|343927938|ref|ZP_08767404.1| prokaryotic ubiquitin-like protein Pup [Gordonia alkanivorans
NBRC 16433]
gi|343762161|dbj|GAA14330.1| prokaryotic ubiquitin-like protein Pup [Gordonia alkanivorans
NBRC 16433]
Length=63
Score = 84.3 bits (207), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/64 (83%), Positives = 55/64 (86%), Gaps = 1/64 (1%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGGG D+ S AGQERREKL E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGGDDEGVGPDS-GAGQERREKLAEDTDDLLDEIDDVLEENAEDFVRAYVQ 59
Query 61 KGGQ 64
KGGQ
Sbjct 60 KGGQ 63
>gi|262202388|ref|YP_003273596.1| hypothetical protein Gbro_2462 [Gordonia bronchialis DSM 43247]
gi|262085735|gb|ACY21703.1| protein of unknown function DUF797 [Gordonia bronchialis DSM
43247]
Length=63
Score = 84.0 bits (206), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/64 (82%), Positives = 54/64 (85%), Gaps = 1/64 (1%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQTKRGGG D D AGQERREKL+E+TDDLLDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQTKRGGGDDDGDL-GPEGGAGQERREKLSEDTDDLLDEIDDVLEENAEDFVRAYVQ 59
Query 61 KGGQ 64
KGGQ
Sbjct 60 KGGQ 63
>gi|302527205|ref|ZP_07279547.1| conserved hypothetical protein [Streptomyces sp. AA4]
gi|302436100|gb|EFL07916.1| conserved hypothetical protein [Streptomyces sp. AA4]
Length=64
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 42/64 (66%), Positives = 51/64 (80%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQE+ ++ GGG ++ + AGQERREKL E+ D +LDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEKIEKHGGGDSHEEFDDAGGAGQERREKLGEDVDTILDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGG+
Sbjct 61 KGGE 64
>gi|258653141|ref|YP_003202297.1| hypothetical protein Namu_2970 [Nakamurella multipartita DSM
44233]
gi|258556366|gb|ACV79308.1| protein of unknown function DUF797 [Nakamurella multipartita
DSM 44233]
Length=64
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/64 (80%), Positives = 55/64 (86%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQE+T R GGG DDD AG+ AAGQERREKL ETDD+LDEIDDVLE NAEDFVR+YVQ
Sbjct 1 MAQERTTRQGGGDGDDDAAGADAAGQERREKLAAETDDILDEIDDVLESNAEDFVRSYVQ 60
Query 61 KGGQ 64
KGGQ
Sbjct 61 KGGQ 64
>gi|134098819|ref|YP_001104480.1| hypothetical protein SACE_2250 [Saccharopolyspora erythraea NRRL
2338]
gi|291005826|ref|ZP_06563799.1| hypothetical protein SeryN2_14998 [Saccharopolyspora erythraea
NRRL 2338]
gi|284022074|sp|A4FBY0.1|PUP1_SACEN RecName: Full=Prokaryotic ubiquitin-like protein Pup 1; AltName:
Full=Bacterial ubiquitin-like modifier 1
gi|133911442|emb|CAM01555.1| hypothetical protein SACE_2250 [Saccharopolyspora erythraea NRRL
2338]
Length=63
Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/42 (89%), Positives = 39/42 (93%), Gaps = 0/42 (0%)
Query 23 AAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
AAGQERREKL E+ D +LDEIDDVLEENAEDFVRAYVQKGGQ
Sbjct 22 AAGQERREKLGEDVDAILDEIDDVLEENAEDFVRAYVQKGGQ 63
>gi|324999222|ref|ZP_08120334.1| Prokaryotic ubiquitin-like protein Pup [Pseudonocardia sp. P1]
Length=65
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/65 (70%), Positives = 53/65 (82%), Gaps = 1/65 (1%)
Query 1 MAQEQTKRGGGGGDDDDIA-GSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYV 59
M+QEQTKR GGG DD+ + +GQERREKL E+ D +LDEIDDVLEENAEDFVR+YV
Sbjct 1 MSQEQTKRQGGGDGDDESGENESGSGQERREKLGEDVDTILDEIDDVLEENAEDFVRSYV 60
Query 60 QKGGQ 64
QKGG+
Sbjct 61 QKGGE 65
>gi|256376366|ref|YP_003100026.1| hypothetical protein Amir_2240 [Actinosynnema mirum DSM 43827]
gi|255920669|gb|ACU36180.1| protein of unknown function DUF797 [Actinosynnema mirum DSM 43827]
Length=64
Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/64 (74%), Positives = 52/64 (82%), Gaps = 0/64 (0%)
Query 1 MAQEQTKRGGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQ 60
MAQEQ +R GGG DD + AAGQERREKL E+ D +LDEIDDVLEENAEDFVRAYVQ
Sbjct 1 MAQEQVQRQGGGDGDDGGDAAAAAGQERREKLGEDVDAILDEIDDVLEENAEDFVRAYVQ 60
Query 61 KGGQ 64
KGG+
Sbjct 61 KGGE 64
>gi|331697109|ref|YP_004333348.1| Ubiquitin-like protein pup [Pseudonocardia dioxanivorans CB1190]
gi|326951798|gb|AEA25495.1| Ubiquitin-like protein pup [Pseudonocardia dioxanivorans CB1190]
Length=65
Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 53/65 (82%), Positives = 59/65 (91%), Gaps = 1/65 (1%)
Query 1 MAQEQTKR-GGGGGDDDDIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYV 59
M+QEQTKR GGGGGDD+D AG+ AAGQERREKL E+ D +LDEIDDVLEENAE+FVRAYV
Sbjct 1 MSQEQTKRQGGGGGDDEDGAGAEAAGQERREKLGEDVDTILDEIDDVLEENAEEFVRAYV 60
Query 60 QKGGQ 64
QKGGQ
Sbjct 61 QKGGQ 65
>gi|317507303|ref|ZP_07965045.1| hypothetical protein HMPREF9336_01417 [Segniliparus rugosus ATCC
BAA-974]
gi|316254406|gb|EFV13734.1| hypothetical protein HMPREF9336_01417 [Segniliparus rugosus ATCC
BAA-974]
Length=65
Score = 65.9 bits (159), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/65 (73%), Positives = 53/65 (82%), Gaps = 1/65 (1%)
Query 1 MAQEQTKRGGGGGDDDDIAGS-TAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYV 59
MAQEQ R GGG +DD++A S + GQER EK E+TDDLLD+ID VLEENAEDFVRAYV
Sbjct 1 MAQEQVTRTGGGDEDDELAQSGSGGGQERLEKAIEDTDDLLDDIDGVLEENAEDFVRAYV 60
Query 60 QKGGQ 64
QKGGQ
Sbjct 61 QKGGQ 65
>gi|302561548|ref|ZP_07313890.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
gi|302479166|gb|EFL42259.1| conserved hypothetical protein [Streptomyces griseoflavus Tu4000]
Length=118
Score = 65.1 bits (157), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/39 (77%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER+EKL+E+ DD+LDEIDDVLE NAEDFVR++VQKGGQ
Sbjct 80 KERQEKLSEDVDDVLDEIDDVLEANAEDFVRSFVQKGGQ 118
>gi|145594774|ref|YP_001159071.1| hypothetical protein Strop_2243 [Salinispora tropica CNB-440]
gi|145304111|gb|ABP54693.1| protein of unknown function DUF797 [Salinispora tropica CNB-440]
Length=96
Score = 65.1 bits (157), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 35/63 (56%), Positives = 45/63 (72%), Gaps = 1/63 (1%)
Query 3 QEQTKRGGGGGDDDDIAG-STAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQK 61
Q QT R G + +D+ ++A ER ++TE+ DDLLDEID VLEENAE+FVR YVQK
Sbjct 34 QSQTGRSQQGEEIEDVTTEASAEAAERHAEITEDVDDLLDEIDSVLEENAEEFVRGYVQK 93
Query 62 GGQ 64
GG+
Sbjct 94 GGE 96
>gi|117928394|ref|YP_872945.1| hypothetical protein Acel_1187 [Acidothermus cellulolyticus 11B]
gi|284022076|sp|A0LU49.1|PUP_ACIC1 RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|117648857|gb|ABK52959.1| protein of unknown function DUF797 [Acidothermus cellulolyticus
11B]
Length=71
Score = 63.9 bits (154), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/48 (67%), Positives = 40/48 (84%), Gaps = 0/48 (0%)
Query 17 DIAGSTAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
D A +T+ QERREKL + D +LDEIDDVLEENAE+FVR+Y+QKGG+
Sbjct 24 DEATATSDVQERREKLDADVDAILDEIDDVLEENAEEFVRSYIQKGGE 71
>gi|288917496|ref|ZP_06411861.1| protein of unknown function DUF797 [Frankia sp. EUN1f]
gi|288351042|gb|EFC85254.1| protein of unknown function DUF797 [Frankia sp. EUN1f]
Length=72
Score = 63.9 bits (154), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/39 (77%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER EKL+E+ D LLDEIDDVLEENAE+FV+ YVQKGGQ
Sbjct 34 KERHEKLSEDVDSLLDEIDDVLEENAEEFVKGYVQKGGQ 72
>gi|284022116|sp|A4X743.2|PUP_SALTO RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
Length=71
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/63 (56%), Positives = 45/63 (72%), Gaps = 1/63 (1%)
Query 3 QEQTKRGGGGGDDDDIAG-STAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQK 61
Q QT R G + +D+ ++A ER ++TE+ DDLLDEID VLEENAE+FVR YVQK
Sbjct 9 QSQTGRSQQGEEIEDVTTEASAEAAERHAEITEDVDDLLDEIDSVLEENAEEFVRGYVQK 68
Query 62 GGQ 64
GG+
Sbjct 69 GGE 71
>gi|289772641|ref|ZP_06532019.1| predicted protein [Streptomyces lividans TK24]
gi|289702840|gb|EFD70269.1| predicted protein [Streptomyces lividans TK24]
Length=82
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/39 (75%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER+EKL+++ D +LDEIDDVLEENAEDFVR++VQKGGQ
Sbjct 44 KERQEKLSDDVDSVLDEIDDVLEENAEDFVRSFVQKGGQ 82
>gi|302550297|ref|ZP_07302639.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
gi|302467915|gb|EFL31008.1| predicted protein [Streptomyces viridochromogenes DSM 40736]
Length=82
Score = 63.5 bits (153), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 29/39 (75%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER+EKL+++ D +LDEIDDVLEENAEDFVR++VQKGGQ
Sbjct 44 KERQEKLSDDVDSVLDEIDDVLEENAEDFVRSFVQKGGQ 82
>gi|86741319|ref|YP_481719.1| hypothetical protein Francci3_2628 [Frankia sp. CcI3]
gi|123751028|sp|Q2J9Q2.1|PUP_FRASC RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|86568181|gb|ABD11990.1| protein of unknown function DUF797 [Frankia sp. CcI3]
Length=72
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/52 (66%), Positives = 41/52 (79%), Gaps = 3/52 (5%)
Query 16 DDIAG---STAAGQERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
DD+A S + +ER EKL+E+ D LLDEIDDVLEENAE+FV+ YVQKGGQ
Sbjct 21 DDVATEDTSASDLKERHEKLSEDVDSLLDEIDDVLEENAEEFVKGYVQKGGQ 72
>gi|302533524|ref|ZP_07285866.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302442419|gb|EFL14235.1| conserved hypothetical protein [Streptomyces sp. C]
Length=81
Score = 63.5 bits (153), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/39 (75%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER+EKL+++ D +LDEIDDVLEENAEDFVR++VQKGGQ
Sbjct 43 KERQEKLSDDVDSVLDEIDDVLEENAEDFVRSFVQKGGQ 81
>gi|345013959|ref|YP_004816313.1| Ubiquitin-like protein pup [Streptomyces violaceusniger Tu 4113]
gi|344040308|gb|AEM86033.1| Ubiquitin-like protein pup [Streptomyces violaceusniger Tu 4113]
Length=72
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/39 (75%), Positives = 37/39 (95%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER+EKL+++ D +LDEIDDVLEENAEDFVR++VQKGGQ
Sbjct 34 KERQEKLSDDVDSVLDEIDDVLEENAEDFVRSFVQKGGQ 72
>gi|182439651|ref|YP_001827370.1| hypothetical protein SGR_5858 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780316|ref|ZP_08239581.1| Ubiquitin-like protein pup [Streptomyces cf. griseus XylebKG-1]
gi|284022078|sp|B1W305.1|PUP_STRGG RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|178468167|dbj|BAG22687.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660649|gb|EGE45495.1| Ubiquitin-like protein pup [Streptomyces griseus XylebKG-1]
Length=72
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/38 (77%), Positives = 36/38 (95%), Gaps = 0/38 (0%)
Query 27 ERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
ER+EKL+++ D +LDEIDDVLEENAEDFVR++VQKGGQ
Sbjct 35 ERQEKLSDDVDSVLDEIDDVLEENAEDFVRSFVQKGGQ 72
>gi|158316643|ref|YP_001509151.1| hypothetical protein Franean1_4880 [Frankia sp. EAN1pec]
gi|284022044|sp|A8LH55.1|PUP_FRASN RecName: Full=Prokaryotic ubiquitin-like protein Pup; AltName:
Full=Bacterial ubiquitin-like modifier
gi|158112048|gb|ABW14245.1| protein of unknown function DUF797 [Frankia sp. EAN1pec]
Length=72
Score = 63.2 bits (152), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/39 (77%), Positives = 35/39 (90%), Gaps = 0/39 (0%)
Query 26 QERREKLTEETDDLLDEIDDVLEENAEDFVRAYVQKGGQ 64
+ER EKL+E+ D LLDEIDDVLEENAE+FV+ YVQKGGQ
Sbjct 34 KERHEKLSEDVDSLLDEIDDVLEENAEEFVKGYVQKGGQ 72
Lambda K H
0.305 0.131 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130804070320
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40