BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2119 Length=278 Score E Sequences producing significant alignments: (Bits) Value gi|15609256|ref|NP_216635.1| hypothetical protein Rv2119 [Mycoba... 558 4e-157 gi|289574798|ref|ZP_06455025.1| conserved hypothetical protein [... 557 8e-157 gi|183983094|ref|YP_001851385.1| hypothetical protein MMAR_3095 ... 468 3e-130 gi|118617851|ref|YP_906183.1| hypothetical protein MUL_2341 [Myc... 467 9e-130 gi|296165191|ref|ZP_06847738.1| RecB family exonuclease [Mycobac... 464 5e-129 gi|240171393|ref|ZP_04750052.1| hypothetical protein MkanA1_1892... 463 1e-128 gi|15827680|ref|NP_301943.1| hypothetical protein ML1312 [Mycoba... 447 1e-123 gi|254819651|ref|ZP_05224652.1| RecB family protein exonuclease ... 443 2e-122 gi|342859812|ref|ZP_08716465.1| RecB family exonuclease [Mycobac... 439 3e-121 gi|254775065|ref|ZP_05216581.1| RecB family protein exonuclease ... 438 5e-121 gi|118466570|ref|YP_881596.1| RecB family protein exonuclease [M... 437 1e-120 gi|336461995|gb|EGO40844.1| RecB family exonuclease [Mycobacteri... 436 2e-120 gi|41407941|ref|NP_960777.1| hypothetical protein MAP1843 [Mycob... 434 1e-119 gi|145223651|ref|YP_001134329.1| RecB family exonuclease [Mycoba... 432 2e-119 gi|120404435|ref|YP_954264.1| RecB family exonuclease [Mycobacte... 431 6e-119 gi|108800103|ref|YP_640300.1| RecB family exonuclease [Mycobacte... 420 1e-115 gi|118469031|ref|YP_888197.1| RecB family protein exonuclease [M... 411 4e-113 gi|169629241|ref|YP_001702890.1| hypothetical protein MAB_2155c ... 384 1e-104 gi|325676838|ref|ZP_08156511.1| RecB family exonuclease [Rhodoco... 366 2e-99 gi|312139712|ref|YP_004007048.1| recb family exonuclease [Rhodoc... 363 1e-98 gi|226360004|ref|YP_002777782.1| hypothetical protein ROP_05900 ... 363 2e-98 gi|111017871|ref|YP_700843.1| hypothetical protein RHA1_ro00852 ... 363 2e-98 gi|229493655|ref|ZP_04387440.1| conserved hypothetical protein [... 351 8e-95 gi|226306669|ref|YP_002766629.1| hypothetical protein RER_31820 ... 347 2e-93 gi|3790598|gb|AAC68687.1| unknown [Rhodococcus erythropolis] 344 1e-92 gi|467028|gb|AAA17213.1| u2126v [Mycobacterium leprae] 343 1e-92 gi|257056217|ref|YP_003134049.1| RecB family exonuclease [Saccha... 332 4e-89 gi|333919661|ref|YP_004493242.1| hypothetical protein AS9A_1993 ... 332 5e-89 gi|300786788|ref|YP_003767079.1| RecB family exonuclease [Amycol... 328 6e-88 gi|302527193|ref|ZP_07279535.1| RecB family exonuclease [Strepto... 328 8e-88 gi|54025152|ref|YP_119394.1| hypothetical protein nfa31830 [Noca... 314 8e-84 gi|134098811|ref|YP_001104472.1| RecB family exonuclease [Saccha... 308 6e-82 gi|289750713|ref|ZP_06510091.1| conserved hypothetical protein [... 308 7e-82 gi|256376349|ref|YP_003100009.1| RecB family exonuclease-like pr... 308 8e-82 gi|317506021|ref|ZP_07963851.1| hypothetical protein HMPREF9336_... 305 4e-81 gi|343927944|ref|ZP_08767410.1| hypothetical protein GOALK_099_0... 300 2e-79 gi|296394679|ref|YP_003659563.1| RecB family exonuclease [Segnil... 299 4e-79 gi|330468532|ref|YP_004406275.1| RecB family exonuclease [Verruc... 291 9e-77 gi|262202382|ref|YP_003273590.1| RecB family exonuclease-like pr... 290 1e-76 gi|315506179|ref|YP_004085066.1| hypothetical protein ML5_5448 [... 286 3e-75 gi|302867411|ref|YP_003836048.1| hypothetical protein Micau_2940... 285 4e-75 gi|238064528|ref|ZP_04609237.1| hypothetical protein MCAG_05494 ... 284 1e-74 gi|159037949|ref|YP_001537202.1| hypothetical protein Sare_2353 ... 278 5e-73 gi|284991128|ref|YP_003409682.1| hypothetical protein Gobs_2676 ... 276 2e-72 gi|145594767|ref|YP_001159064.1| hypothetical protein Strop_2236... 275 7e-72 gi|119716861|ref|YP_923826.1| hypothetical protein Noca_2636 [No... 271 6e-71 gi|345013966|ref|YP_004816320.1| hypothetical protein Strvi_6658... 271 6e-71 gi|256391609|ref|YP_003113173.1| RecB family exonuclease-like pr... 268 6e-70 gi|311900006|dbj|BAJ32414.1| hypothetical protein KSE_66550 [Kit... 268 9e-70 gi|297198514|ref|ZP_06915911.1| RecB family exonuclease [Strepto... 267 1e-69 >gi|15609256|ref|NP_216635.1| hypothetical protein Rv2119 [Mycobacterium tuberculosis H37Rv] gi|15841611|ref|NP_336648.1| hypothetical protein MT2179 [Mycobacterium tuberculosis CDC1551] gi|31793299|ref|NP_855792.1| hypothetical protein Mb2143 [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=278 Score = 558 bits (1438), Expect = 4e-157, Method: Compositional matrix adjust. Identities = 278/278 (100%), Positives = 278/278 (100%), Gaps = 0/278 (0%) Query 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG Sbjct 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 Query 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR Sbjct 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 Query 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ 180 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ Sbjct 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ 180 Query 181 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG 240 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG Sbjct 181 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG 240 Query 241 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA Sbjct 241 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 >gi|289574798|ref|ZP_06455025.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289539229|gb|EFD43807.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length=278 Score = 557 bits (1435), Expect = 8e-157, Method: Compositional matrix adjust. Identities = 277/278 (99%), Positives = 277/278 (99%), Gaps = 0/278 (0%) Query 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG Sbjct 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 Query 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR Sbjct 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 Query 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ 180 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARAL EFKAMFQ Sbjct 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALTEFKAMFQ 180 Query 181 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG 240 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG Sbjct 181 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG 240 Query 241 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA Sbjct 241 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 >gi|183983094|ref|YP_001851385.1| hypothetical protein MMAR_3095 [Mycobacterium marinum M] gi|183176420|gb|ACC41530.1| conserved hypothetical protein [Mycobacterium marinum M] Length=293 Score = 468 bits (1205), Expect = 3e-130, Method: Compositional matrix adjust. Identities = 234/279 (84%), Positives = 246/279 (89%), Gaps = 3/279 (1%) Query 1 MADQPDPPTP---RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQ 57 M DQP RPALSPSRA DFKQCPLLYRFRAIDRLPE S AQLRGSVVHAALEQ Sbjct 1 MTDQPGSVASVYIRPALSPSRAADFKQCPLLYRFRAIDRLPEKPSTAQLRGSVVHAALEQ 60 Query 58 LYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLED 117 LY LPA R PDTARSLV+ AW+Q++A E +LAGEL Q QLLEDARAL+SGYYRLED Sbjct 61 LYALPAVQRGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLED 120 Query 118 PTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 177 P RFDPQ CEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA Sbjct 121 PRRFDPQSCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 180 Query 178 MFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAG 237 MFQMKFY VALFRSRGV P+RLRLIYLADGQ+LDYSPDRDELLRFEKTLMAIWRAIQSAG Sbjct 181 MFQMKFYGVALFRSRGVLPSRLRLIYLADGQVLDYSPDRDELLRFEKTLMAIWRAIQSAG 240 Query 238 ETGDFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEP 276 ++GDFRPN SRLC+WCPHQQ CPA+GGTPPPYPGWP P Sbjct 241 QSGDFRPNASRLCNWCPHQQHCPAYGGTPPPYPGWPDRP 279 >gi|118617851|ref|YP_906183.1| hypothetical protein MUL_2341 [Mycobacterium ulcerans Agy99] gi|118569961|gb|ABL04712.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=293 Score = 467 bits (1202), Expect = 9e-130, Method: Compositional matrix adjust. Identities = 234/281 (84%), Positives = 246/281 (88%), Gaps = 3/281 (1%) Query 1 MADQPDPPTP---RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQ 57 M DQP RPALSPSRA DFKQCPLLYRFRAIDRL E S AQLRGSVVHAALEQ Sbjct 1 MTDQPGSVASVYIRPALSPSRAADFKQCPLLYRFRAIDRLSEKPSTAQLRGSVVHAALEQ 60 Query 58 LYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLED 117 LY LPA R PDTARSLV+ AW+Q++A E +LAGEL Q QLLEDARAL+SGYYRLED Sbjct 61 LYALPAVQRGPDTARSLVESAWEQVIAGELDLAGELAADQQAQLLEDARALLSGYYRLED 120 Query 118 PTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 177 P RFDPQ CEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA Sbjct 121 PRRFDPQSCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 180 Query 178 MFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAG 237 MFQMKFY VALFRSRGV P+RLRLIYLADGQ+LDYSPDRDELLRFEKTLMAIWRAIQSAG Sbjct 181 MFQMKFYGVALFRSRGVLPSRLRLIYLADGQVLDYSPDRDELLRFEKTLMAIWRAIQSAG 240 Query 238 ETGDFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 ++GDFRPN SRLC+WCPHQQ CPA+GGTPPPYPGWP P A Sbjct 241 QSGDFRPNASRLCNWCPHQQHCPAYGGTPPPYPGWPDRPPA 281 >gi|296165191|ref|ZP_06847738.1| RecB family exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899380|gb|EFG78839.1| RecB family exonuclease [Mycobacterium parascrofulaceum ATCC BAA-614] Length=313 Score = 464 bits (1195), Expect = 5e-129, Method: Compositional matrix adjust. Identities = 229/271 (85%), Positives = 244/271 (91%), Gaps = 0/271 (0%) Query 8 PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRS 67 P +PALSPSRA DFKQCPLLYRFRAIDRLPEA SAAQLRGSVVHAAL+QLY LPA R Sbjct 32 PASKPALSPSRAADFKQCPLLYRFRAIDRLPEAPSAAQLRGSVVHAALQQLYALPAAQRG 91 Query 68 PDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCE 127 PDTA +L++ AWDQ+VAA PELAGE +P Q QLL +ARAL+SGYYRLEDPTRFDPQCCE Sbjct 92 PDTALALLEPAWDQVVAAAPELAGEFEPAQRGQLLAEARALLSGYYRLEDPTRFDPQCCE 151 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 +RVEVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA Sbjct 152 ERVEVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 211 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L R+RGVPPTRLRLIYLADGQ+LDYSPD DELLRFEKTL AIWRAIQ+AG TGDFRP+ S Sbjct 212 LLRTRGVPPTRLRLIYLADGQVLDYSPDHDELLRFEKTLTAIWRAIQTAGRTGDFRPSQS 271 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 RLCDWCPHQQ CP FGGTPP YPGWP AA Sbjct 272 RLCDWCPHQQHCPLFGGTPPAYPGWPDYSAA 302 >gi|240171393|ref|ZP_04750052.1| hypothetical protein MkanA1_18921 [Mycobacterium kansasii ATCC 12478] Length=289 Score = 463 bits (1192), Expect = 1e-128, Method: Compositional matrix adjust. Identities = 235/277 (85%), Positives = 246/277 (89%), Gaps = 6/277 (2%) Query 1 MADQPDPPTP---RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQ 57 MADQ P RPALSPSRATDFKQCPLLYRFRAIDRLPEA SA QLRGSVVHAALEQ Sbjct 1 MADQLIPEADLRIRPALSPSRATDFKQCPLLYRFRAIDRLPEAPSAPQLRGSVVHAALEQ 60 Query 58 LYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLED 117 LY LPA R P+TARSLV+ AW+Q++A EP LA EL QP LL++ARAL+SGYYRLED Sbjct 61 LYALPAVQRGPETARSLVEAAWEQVIAGEPALADEL---QPQALLDEARALLSGYYRLED 117 Query 118 PTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 177 PTRFDPQCCE RVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA Sbjct 118 PTRFDPQCCEHRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKA 177 Query 178 MFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAG 237 +FQMKFY VALFRSRGV PTRLRLIYLAD Q+LDYSPDRDELLRFEKTLMAIWRAIQSAG Sbjct 178 LFQMKFYGVALFRSRGVLPTRLRLIYLADSQVLDYSPDRDELLRFEKTLMAIWRAIQSAG 237 Query 238 ETGDFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWPT 274 +GDFRPNPSRLCDWCPHQ CPAFGGTPPPYPGWP Sbjct 238 RSGDFRPNPSRLCDWCPHQAHCPAFGGTPPPYPGWPN 274 >gi|15827680|ref|NP_301943.1| hypothetical protein ML1312 [Mycobacterium leprae TN] gi|221230157|ref|YP_002503573.1| hypothetical protein MLBr_01312 [Mycobacterium leprae Br4923] gi|4200265|emb|CAA22922.1| hypothetical protein MLCB2533.08c [Mycobacterium leprae] gi|13093231|emb|CAC31693.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933264|emb|CAR71407.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=294 Score = 447 bits (1149), Expect = 1e-123, Method: Compositional matrix adjust. Identities = 222/278 (80%), Positives = 239/278 (86%), Gaps = 5/278 (1%) Query 1 MADQPDP-----PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAAL 55 M DQP P +PR ALSPSRA DFKQCPLLYRFRAIDRLPEA SAAQL GSVVH L Sbjct 1 MIDQPKPLRADLCSPRLALSPSRAADFKQCPLLYRFRAIDRLPEAPSAAQLLGSVVHTTL 60 Query 56 EQLYGLPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRL 115 ++LYGLPA R DTARSLV+ W+QM+AAE +L GELD Q TQLL++AR L+SGYYRL Sbjct 61 QRLYGLPALRRCSDTARSLVESVWNQMIAAERDLDGELDAKQRTQLLDEARTLLSGYYRL 120 Query 116 EDPTRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEF 175 EDPTRF+PQ CEQRVEVELADG LLRG+IDRIDVAATGELRVVDYKTGKAPPAA+ALAEF Sbjct 121 EDPTRFNPQSCEQRVEVELADGLLLRGFIDRIDVAATGELRVVDYKTGKAPPAAQALAEF 180 Query 176 KAMFQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQS 235 KAMFQMKFYA+ L SRGV P RLRLIYLAD QLLDY+PDRDELLRF KTLMAIWR IQ Sbjct 181 KAMFQMKFYALTLLHSRGVLPARLRLIYLADSQLLDYAPDRDELLRFGKTLMAIWRTIQF 240 Query 236 AGETGDFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWP 273 +GETGDFRPNPSRLC WCPHQ+ CPAFGGTPPPYPGWP Sbjct 241 SGETGDFRPNPSRLCGWCPHQEHCPAFGGTPPPYPGWP 278 >gi|254819651|ref|ZP_05224652.1| RecB family protein exonuclease [Mycobacterium intracellulare ATCC 13950] Length=298 Score = 443 bits (1139), Expect = 2e-122, Method: Compositional matrix adjust. Identities = 224/263 (86%), Positives = 240/263 (92%), Gaps = 0/263 (0%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA DFKQCPLLYRFRAIDRLPEA S AQLRGS+VHAAL+QLY LPA R PDT Sbjct 20 RPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAALQQLYELPAAQRGPDT 79 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A SLVQ AW+Q++AA PE+ LDP Q +QLL +A+AL++GYYRLEDPTRFDPQCCE+RV Sbjct 80 ALSLVQPAWEQVMAATPEMTAGLDPAQRSQLLAEAQALLAGYYRLEDPTRFDPQCCEERV 139 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 EVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPP ARALAEFKAMFQMKFYAVAL R Sbjct 140 EVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPEARALAEFKAMFQMKFYAVALLR 199 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 SRGVPPTRLRLIYLADGQ+LDYSPD DELLRFEKTL+AIWRAIQSAG+TGDFRP SRLC Sbjct 200 SRGVPPTRLRLIYLADGQVLDYSPDHDELLRFEKTLIAIWRAIQSAGQTGDFRPTQSRLC 259 Query 251 DWCPHQQRCPAFGGTPPPYPGWP 273 DWCPHQQ CP FGGTPPPYPGWP Sbjct 260 DWCPHQQHCPLFGGTPPPYPGWP 282 >gi|342859812|ref|ZP_08716465.1| RecB family exonuclease [Mycobacterium colombiense CECT 3035] gi|342132944|gb|EGT86164.1| RecB family exonuclease [Mycobacterium colombiense CECT 3035] Length=302 Score = 439 bits (1129), Expect = 3e-121, Method: Compositional matrix adjust. Identities = 223/268 (84%), Positives = 240/268 (90%), Gaps = 0/268 (0%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA DFKQCPLLYRFRAIDRLPEA SAAQLRGS+VHA L+QLY LPA R PDT Sbjct 24 RPALSPSRAADFKQCPLLYRFRAIDRLPEAPSAAQLRGSLVHATLQQLYDLPAEQRGPDT 83 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A SLV+ AWDQ++AA PE+ ++DP Q TQLL +A+AL++GYYRLEDPT F+P+CCEQRV Sbjct 84 AMSLVEPAWDQIIAATPEMTADVDPVQRTQLLAEAQALLAGYYRLEDPTGFNPECCEQRV 143 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 EVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVAL R Sbjct 144 EVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALLR 203 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 SRGV PTRLRLIYLADGQ+LDY+PD DELLRFEKTLMAIWRAIQ AG TGDFRP SRLC Sbjct 204 SRGVQPTRLRLIYLADGQVLDYTPDHDELLRFEKTLMAIWRAIQLAGRTGDFRPTQSRLC 263 Query 251 DWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 DWCPHQQ CP FGGTPPPYPGWP AA Sbjct 264 DWCPHQQHCPLFGGTPPPYPGWPESLAA 291 >gi|254775065|ref|ZP_05216581.1| RecB family protein exonuclease [Mycobacterium avium subsp. avium ATCC 25291] Length=301 Score = 438 bits (1126), Expect = 5e-121, Method: Compositional matrix adjust. Identities = 225/272 (83%), Positives = 242/272 (89%), Gaps = 0/272 (0%) Query 2 ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGL 61 A +P RPALSPSRA DFKQCPLLYRFRAIDRLPEA S AQLRGS+VHAAL+QLY L Sbjct 11 AARPTGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAALQQLYEL 70 Query 62 PAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRF 121 PA R P+TA +LV AW+Q++AA PEL +LDP Q QLL +A+AL++GYYRLEDPTRF Sbjct 71 PAAQRGPETALALVGPAWEQLLAASPELTADLDPTQHGQLLAEAQALLAGYYRLEDPTRF 130 Query 122 DPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 181 DPQCCE+RVEVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM Sbjct 131 DPQCCEERVEVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 190 Query 182 KFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD 241 KFYAVAL RSRGVPPTRLRLIYLADGQ+LDYSP+ DELLRFEKTLMAIWRAIQSAG TGD Sbjct 191 KFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPEYDELLRFEKTLMAIWRAIQSAGRTGD 250 Query 242 FRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWP 273 FRP SRLCDWCPHQQ CP FGGTPPPYPGWP Sbjct 251 FRPTQSRLCDWCPHQQLCPLFGGTPPPYPGWP 282 >gi|118466570|ref|YP_881596.1| RecB family protein exonuclease [Mycobacterium avium 104] gi|118167857|gb|ABK68754.1| RecB family protein exonuclease [Mycobacterium avium 104] Length=301 Score = 437 bits (1123), Expect = 1e-120, Method: Compositional matrix adjust. Identities = 225/272 (83%), Positives = 242/272 (89%), Gaps = 0/272 (0%) Query 2 ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGL 61 A +P RPALSPSRA DFKQCPLLYRFRAIDRLPEA S AQLRGS+VHAAL+QLY L Sbjct 11 AARPAGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAALQQLYEL 70 Query 62 PAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRF 121 PA R P+TA +LV AW+Q++AA PEL +LDP Q QLL +A+AL++GYYRLEDPTRF Sbjct 71 PAAQRGPETALALVGPAWEQLLAATPELTADLDPTQHGQLLAEAQALLAGYYRLEDPTRF 130 Query 122 DPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 181 DPQCCE+RVEVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM Sbjct 131 DPQCCEERVEVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 190 Query 182 KFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD 241 KFYAVAL RSRGVPPTRLRLIYLADGQ+LDYSP+ DELLRFEKTLMAIWRAIQSAG TGD Sbjct 191 KFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPEYDELLRFEKTLMAIWRAIQSAGRTGD 250 Query 242 FRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWP 273 FRP SRLCDWCPHQQ CP FGGTPPPYPGWP Sbjct 251 FRPTQSRLCDWCPHQQLCPLFGGTPPPYPGWP 282 >gi|336461995|gb|EGO40844.1| RecB family exonuclease [Mycobacterium avium subsp. paratuberculosis S397] Length=301 Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust. Identities = 224/272 (83%), Positives = 242/272 (89%), Gaps = 0/272 (0%) Query 2 ADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGL 61 A +P RPALSPSRA DFKQCPLLYRFRAIDRLPEA S AQLRGS+VHAAL+QLY L Sbjct 11 AARPAGQVSRPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAALQQLYEL 70 Query 62 PAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRF 121 PA R P+TA +LV AW+Q++AA PEL +LDP Q QLL +A+AL++GYYRLEDPTRF Sbjct 71 PAAQRGPETALALVGPAWEQLLAATPELTADLDPTQHGQLLAEAQALLAGYYRLEDPTRF 130 Query 122 DPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 181 DPQCCE+RVEVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM Sbjct 131 DPQCCEERVEVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 190 Query 182 KFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD 241 KFYAVAL RSRGVPPTRLRLIYLADGQ+LDYSP+ DELLRFEKTLMAIWRAIQ+AG TGD Sbjct 191 KFYAVALLRSRGVPPTRLRLIYLADGQVLDYSPEYDELLRFEKTLMAIWRAIQTAGRTGD 250 Query 242 FRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWP 273 FRP SRLCDWCPHQQ CP FGGTPPPYPGWP Sbjct 251 FRPTQSRLCDWCPHQQLCPLFGGTPPPYPGWP 282 >gi|41407941|ref|NP_960777.1| hypothetical protein MAP1843 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396295|gb|AAS04160.1| hypothetical protein MAP_1843 [Mycobacterium avium subsp. paratuberculosis K-10] Length=301 Score = 434 bits (1115), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 221/263 (85%), Positives = 238/263 (91%), Gaps = 0/263 (0%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA DFKQCPLLYRFRAIDRLPEA S AQLRGS+VHAAL+QLY LPA R P+T Sbjct 20 RPALSPSRAADFKQCPLLYRFRAIDRLPEAPSPAQLRGSLVHAALQQLYELPAAQRGPET 79 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A +LV AW+Q++AA PEL +LDP Q QLL +A+AL++GYYRLEDPTRFDPQCCE+RV Sbjct 80 ALALVDPAWEQLLAATPELTADLDPTQHGQLLAEAQALLAGYYRLEDPTRFDPQCCEERV 139 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 EVELADGTLLRG+IDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVAL R Sbjct 140 EVELADGTLLRGFIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALLR 199 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 SRGVPPTRLRLIYLADGQ+LDYSP+ DELLRFEKTLMAIWRAIQ+AG TGDFRP SRLC Sbjct 200 SRGVPPTRLRLIYLADGQVLDYSPEYDELLRFEKTLMAIWRAIQTAGRTGDFRPTQSRLC 259 Query 251 DWCPHQQRCPAFGGTPPPYPGWP 273 DWCPHQQ CP F GTPPPYPGWP Sbjct 260 DWCPHQQLCPLFDGTPPPYPGWP 282 >gi|145223651|ref|YP_001134329.1| RecB family exonuclease [Mycobacterium gilvum PYR-GCK] gi|315443977|ref|YP_004076856.1| RecB family exonuclease [Mycobacterium sp. Spyr1] gi|145216137|gb|ABP45541.1| putative RecB family exonuclease [Mycobacterium gilvum PYR-GCK] gi|315262280|gb|ADT99021.1| RecB family exonuclease [Mycobacterium sp. Spyr1] Length=291 Score = 432 bits (1111), Expect = 2e-119, Method: Compositional matrix adjust. Identities = 212/273 (78%), Positives = 233/273 (86%), Gaps = 0/273 (0%) Query 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 M +Q P RPALSPSRA DFKQCPLLYRFRAIDRLPE +S AQ+RGSVVHAALEQLY Sbjct 1 MGEQSGHPVRRPALSPSRAGDFKQCPLLYRFRAIDRLPEPSSTAQVRGSVVHAALEQLYA 60 Query 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 LPA R P+TA SLV AW+++VA +P LA ++DP ++LE AR L+SGYYRLEDPTR Sbjct 61 LPAAERRPETALSLVAPAWERVVAEQPSLATDIDPALRAEMLEQARTLLSGYYRLEDPTR 120 Query 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQ 180 FDPQ CEQRVEVELADGTLLRG+IDRIDVA TGE+RVVDYKTGKAPP ARALAEFKAMFQ Sbjct 121 FDPQSCEQRVEVELADGTLLRGFIDRIDVAPTGEMRVVDYKTGKAPPEARALAEFKAMFQ 180 Query 181 MKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETG 240 MKFYAVAL RSRG P RLRL+YLAD Q+LDY+P DEL RFEKTLMAIWRAIQSAG TG Sbjct 181 MKFYAVALLRSRGSLPARLRLVYLADHQILDYTPTLDELERFEKTLMAIWRAIQSAGATG 240 Query 241 DFRPNPSRLCDWCPHQQRCPAFGGTPPPYPGWP 273 DFRP+PSRLC+WC HQ CP+FGGTPPPYPGWP Sbjct 241 DFRPSPSRLCNWCAHQAHCPSFGGTPPPYPGWP 273 >gi|120404435|ref|YP_954264.1| RecB family exonuclease [Mycobacterium vanbaalenii PYR-1] gi|119957253|gb|ABM14258.1| putative RecB family exonuclease [Mycobacterium vanbaalenii PYR-1] Length=304 Score = 431 bits (1108), Expect = 6e-119, Method: Compositional matrix adjust. Identities = 211/270 (79%), Positives = 235/270 (88%), Gaps = 0/270 (0%) Query 4 QPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPA 63 +P P RPALSPSRA+DFKQCPLLYRFRAIDRLPE +SAAQ+RG+VVHAALEQLY LPA Sbjct 13 EPTRPVRRPALSPSRASDFKQCPLLYRFRAIDRLPEPSSAAQVRGTVVHAALEQLYRLPA 72 Query 64 GLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDP 123 R P TA +LV W++++A +P LA +++P +LLE ARAL+SGYYRLEDPTRFDP Sbjct 73 VERGPATAAALVAPVWERLLAEQPSLAVDIEPALHGELLEQARALLSGYYRLEDPTRFDP 132 Query 124 QCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKF 183 Q CEQRVEVEL DGTLLRGY+DRIDVA TGE+RVVDYKTGKAPP ARALAEFKAMFQMKF Sbjct 133 QSCEQRVEVELVDGTLLRGYVDRIDVAPTGEVRVVDYKTGKAPPEARALAEFKAMFQMKF 192 Query 184 YAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFR 243 YAVAL RSRGV P+RLRL+YLADGQ+LDYSPD +EL RFEKTLMAIWRAIQSAG TGDFR Sbjct 193 YAVALLRSRGVLPSRLRLLYLADGQVLDYSPDLEELERFEKTLMAIWRAIQSAGATGDFR 252 Query 244 PNPSRLCDWCPHQQRCPAFGGTPPPYPGWP 273 PNPS+LCDWC H+ CP FGGTPPPYPGWP Sbjct 253 PNPSKLCDWCAHRVHCPTFGGTPPPYPGWP 282 >gi|108800103|ref|YP_640300.1| RecB family exonuclease [Mycobacterium sp. MCS] gi|119869231|ref|YP_939183.1| RecB family exonuclease [Mycobacterium sp. KMS] gi|126435728|ref|YP_001071419.1| RecB family exonuclease [Mycobacterium sp. JLS] gi|108770522|gb|ABG09244.1| putative RecB family exonuclease [Mycobacterium sp. MCS] gi|119695320|gb|ABL92393.1| putative RecB family exonuclease [Mycobacterium sp. KMS] gi|126235528|gb|ABN98928.1| putative RecB family exonuclease [Mycobacterium sp. JLS] Length=277 Score = 420 bits (1079), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 208/271 (77%), Positives = 229/271 (85%), Gaps = 0/271 (0%) Query 8 PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRS 67 P RPALSPSRA DFKQCPLLYRFRAIDRLPE S AQLRGSVVHAALEQLY LPA R Sbjct 7 PVRRPALSPSRAADFKQCPLLYRFRAIDRLPEPQSTAQLRGSVVHAALEQLYALPAADRG 66 Query 68 PDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCE 127 PDTA +LV AWD+++A PE A +++P LL +ARAL++GYYRLEDPTRFDPQCCE Sbjct 67 PDTALTLVAPAWDRVIAERPEAAEDIEPAVREALLGEARALLAGYYRLEDPTRFDPQCCE 126 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 Q VEVEL DGTLLRG++DRIDVA TGELRVVDYKTGKAPP ARALAE KA+FQMKFYAVA Sbjct 127 QHVEVELDDGTLLRGFVDRIDVAPTGELRVVDYKTGKAPPEARALAEAKALFQMKFYAVA 186 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L RSRGV PTRLRL+YLAD Q+LDYSPD +EL+RFE+TL AIWRAI +AG TGDFRP PS Sbjct 187 LLRSRGVLPTRLRLLYLADSQVLDYSPDLEELVRFERTLTAIWRAILAAGATGDFRPKPS 246 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 +LCDWC H+ CP FGGTPPPYPGWP PAA Sbjct 247 KLCDWCSHRALCPEFGGTPPPYPGWPEMPAA 277 >gi|118469031|ref|YP_888197.1| RecB family protein exonuclease [Mycobacterium smegmatis str. MC2 155] gi|118170318|gb|ABK71214.1| RecB family protein exonuclease [Mycobacterium smegmatis str. MC2 155] Length=291 Score = 411 bits (1057), Expect = 4e-113, Method: Compositional matrix adjust. Identities = 205/265 (78%), Positives = 228/265 (87%), Gaps = 3/265 (1%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA+DFKQCPLLYRFRAIDRLPE S AQLRG++VHAALE LYGLPA R PDT Sbjct 14 RPALSPSRASDFKQCPLLYRFRAIDRLPEPRSTAQLRGTLVHAALEDLYGLPAQERVPDT 73 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A SLV+ AWD++VAA+PELA + LL +ARAL++GYYRLEDPTRFDPQCCEQ + Sbjct 74 ALSLVEPAWDRVVAADPELASL---AERDVLLREARALLTGYYRLEDPTRFDPQCCEQLI 130 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 EVELADGTLLRGY+DRIDVA TGE+RVVDYKTGKAP AAR LAEFKA+FQMKFYAVAL R Sbjct 131 EVELADGTLLRGYVDRIDVAPTGEVRVVDYKTGKAPAAARELAEFKALFQMKFYAVALLR 190 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 SR V P+RLRL+YLAD Q+LDYSP DELLRFE+TL+AIW+AIQ+AG GDFRPNPSRLC Sbjct 191 SREVMPSRLRLLYLADKQVLDYSPAHDELLRFERTLIAIWKAIQAAGAGGDFRPNPSRLC 250 Query 251 DWCPHQQRCPAFGGTPPPYPGWPTE 275 WC HQ CPAFGGT PPYPGWP + Sbjct 251 SWCAHQSLCPAFGGTLPPYPGWPDQ 275 >gi|169629241|ref|YP_001702890.1| hypothetical protein MAB_2155c [Mycobacterium abscessus ATCC 19977] gi|169241208|emb|CAM62236.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=293 Score = 384 bits (985), Expect = 1e-104, Method: Compositional matrix adjust. Identities = 189/270 (70%), Positives = 221/270 (82%), Gaps = 3/270 (1%) Query 6 DPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGL 65 D P RPALSPSRA+DFKQCPLLYR RAIDRLPE SAAQ RGS+VHAALE LY PA Sbjct 7 DRPVRRPALSPSRASDFKQCPLLYRLRAIDRLPEPPSAAQARGSLVHAALEDLYTRPAAE 66 Query 66 RSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQC 125 R TA LV+ AW+++V + PELA ++ + + ++AR L+SGYYRLEDPTRFDP Sbjct 67 REYATAAGLVEPAWERLVESNPELAEVVEAERLPRFFDEARDLLSGYYRLEDPTRFDPDS 126 Query 126 CEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYA 185 CE+RVEVELADGT+LRG+IDRID+A G +R+VDYKTG+AP RAL E KA+FQMKFYA Sbjct 127 CEERVEVELADGTMLRGFIDRIDIAPGGAMRLVDYKTGRAP---RALFEAKALFQMKFYA 183 Query 186 VALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPN 245 VAL+R+RGV P RLRL+YL+DG++LDY+PD ELL+FEKTLMAIWRAIQ+ G TGDFRPN Sbjct 184 VALYRTRGVVPRRLRLLYLSDGEVLDYAPDEAELLKFEKTLMAIWRAIQNIGTTGDFRPN 243 Query 246 PSRLCDWCPHQQRCPAFGGTPPPYPGWPTE 275 PSRLCDWC HQ CPAFGGTPPPYPGWP + Sbjct 244 PSRLCDWCAHQSLCPAFGGTPPPYPGWPAD 273 >gi|325676838|ref|ZP_08156511.1| RecB family exonuclease [Rhodococcus equi ATCC 33707] gi|325552386|gb|EGD22075.1| RecB family exonuclease [Rhodococcus equi ATCC 33707] Length=301 Score = 366 bits (940), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 180/266 (68%), Positives = 208/266 (79%), Gaps = 3/266 (1%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 R ALSPSRA DFKQCPLLYRFRAIDRLPE S AQ++G+VVHAALE L+ LPAG R D Sbjct 27 RLALSPSRAGDFKQCPLLYRFRAIDRLPETPSKAQVKGTVVHAALEALFALPAGERVADR 86 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A+ LV+ AWD+++A PELA + P Q L DAR L++ YYRLEDPTRFDP+ CE RV Sbjct 87 AKELVEPAWDRVLADSPELAELIGPADRGQFLTDARRLIANYYRLEDPTRFDPEACELRV 146 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 E EL DG LLRG++DR+DV+ TG +RVVDYKTG+AP L+E KA+FQMKFYA+ L R Sbjct 147 ETELDDGVLLRGFVDRVDVSPTGLVRVVDYKTGRAP---WELSESKALFQMKFYALVLLR 203 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 +RGV P RL+L+YL DGQ L Y P DELLRFE+TL AIW+AI AG TGDFRPNP RLC Sbjct 204 TRGVVPARLQLLYLGDGQTLTYDPVEDELLRFERTLSAIWQAISEAGTTGDFRPNPGRLC 263 Query 251 DWCPHQQRCPAFGGTPPPYPGWPTEP 276 DWC H+ RCPAFGGTPPPYPGWP P Sbjct 264 DWCDHRSRCPAFGGTPPPYPGWPDVP 289 >gi|312139712|ref|YP_004007048.1| recb family exonuclease [Rhodococcus equi 103S] gi|311889051|emb|CBH48364.1| RecB family exonuclease [Rhodococcus equi 103S] Length=295 Score = 363 bits (933), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 179/267 (68%), Positives = 208/267 (78%), Gaps = 3/267 (1%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 R ALSPSRA DFKQCPLLYRFRAIDRLPE S AQ++G+VVHAALE L+ LPAG R D Sbjct 21 RLALSPSRAGDFKQCPLLYRFRAIDRLPETPSKAQVKGTVVHAALEALFALPAGERVADR 80 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A+ LV+ AWD+++A PELA + P Q L DAR L++ YYRLEDPTRFDP+ CE RV Sbjct 81 AKELVEPAWDRVLADSPELAELIGPADRGQFLTDARRLIANYYRLEDPTRFDPEACELRV 140 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 E EL DG LLRG++DR+DV+ TG +RVVDYKTG+AP L+E KA+FQMKFYA+ L R Sbjct 141 ETELDDGVLLRGFVDRVDVSPTGLVRVVDYKTGRAP---WELSESKALFQMKFYALVLLR 197 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 +RGV P RL+L+YL DGQ L Y P DELLRFE+TL AIW+AI AG TGDFRPNP RLC Sbjct 198 TRGVVPARLQLLYLGDGQTLTYDPVEDELLRFERTLSAIWQAISEAGTTGDFRPNPGRLC 257 Query 251 DWCPHQQRCPAFGGTPPPYPGWPTEPA 277 DWC H+ RCPAFG TPPPYPGWP P+ Sbjct 258 DWCDHRSRCPAFGRTPPPYPGWPDVPS 284 >gi|226360004|ref|YP_002777782.1| hypothetical protein ROP_05900 [Rhodococcus opacus B4] gi|226238489|dbj|BAH48837.1| hypothetical protein [Rhodococcus opacus B4] Length=301 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 175/267 (66%), Positives = 214/267 (81%), Gaps = 3/267 (1%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA DFKQCPLLYRFRA+DRLPEA S AQ++G+VVHAALE L+GLPA R P Sbjct 27 RPALSPSRAGDFKQCPLLYRFRAVDRLPEAPSRAQVKGTVVHAALETLFGLPAAERVPAR 86 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A LV+ +W++++ P+L + Q L++AR+LV+ YY+LEDPTRF+ + CEQRV Sbjct 87 AVDLVRPSWERLLDEAPDLIDLVPVDQRESFLDEARSLVTAYYQLEDPTRFEAESCEQRV 146 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 E ELADG LLRG++DRIDVA TGE+RVVDYKTG+AP R ++E KA+FQMKFYA+ L R Sbjct 147 ETELADGVLLRGFVDRIDVAPTGEVRVVDYKTGRAP---REMSESKALFQMKFYALVLLR 203 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 +RG+ P +LRL+YLA G +L Y+PD DELLRFE+TL AIW+AI +AG TGDFRP PSRLC Sbjct 204 TRGIVPAQLRLLYLASGTVLTYAPDEDELLRFERTLSAIWKAILAAGVTGDFRPKPSRLC 263 Query 251 DWCPHQQRCPAFGGTPPPYPGWPTEPA 277 DWC H+ CP+FGGTPPPYPGWP PA Sbjct 264 DWCDHKSLCPSFGGTPPPYPGWPEGPA 290 >gi|111017871|ref|YP_700843.1| hypothetical protein RHA1_ro00852 [Rhodococcus jostii RHA1] gi|110817401|gb|ABG92685.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=301 Score = 363 bits (931), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 174/267 (66%), Positives = 213/267 (80%), Gaps = 3/267 (1%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA DFKQCPLLYRFRA+DRLPEA S AQ++G+VVHAALE L+GLPA R P Sbjct 27 RPALSPSRAGDFKQCPLLYRFRAVDRLPEAPSRAQVKGTVVHAALETLFGLPAAERVPQK 86 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRV 130 A L+ +W++++A P+L + + L++AR+LV+ YY LEDPTRF+ + CEQRV Sbjct 87 AVDLILPSWERILAEAPDLIDLVPDEERDAFLDEARSLVTTYYELEDPTRFEAESCEQRV 146 Query 131 EVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFR 190 E ELADG LLRG++DRIDVA TGE+RVVDYKTG+AP R ++E KA+FQMKFYA+ L R Sbjct 147 ETELADGVLLRGFVDRIDVAPTGEVRVVDYKTGRAP---REMSESKALFQMKFYALVLLR 203 Query 191 SRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 +RG+ P +LRL+YLA G +L Y+PD DELLRFE+TL AIW+AI +AG TGDFRP PSRLC Sbjct 204 TRGIVPAQLRLLYLASGTVLTYAPDEDELLRFERTLSAIWKAILAAGVTGDFRPKPSRLC 263 Query 251 DWCPHQQRCPAFGGTPPPYPGWPTEPA 277 DWC H+ CP+FGGTPPPYPGWP PA Sbjct 264 DWCDHKSMCPSFGGTPPPYPGWPEGPA 290 >gi|229493655|ref|ZP_04387440.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229319616|gb|EEN85452.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=353 Score = 351 bits (900), Expect = 8e-95, Method: Compositional matrix adjust. Identities = 171/275 (63%), Positives = 206/275 (75%), Gaps = 7/275 (2%) Query 8 PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRS 67 P RPALSPSRA D+KQCPLLYRFRA+DR+PE + AQ+RG+VVHAALE L+ LP G R Sbjct 77 PRSRPALSPSRAGDYKQCPLLYRFRAVDRIPETPTRAQVRGTVVHAALEALFALPTGHRV 136 Query 68 PDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCE 127 PD A LV+ AW+++ A PE A + G+ L++ LV+ YY LEDPTRFD + CE Sbjct 137 PDRAAELVRPAWERVSAESPEAADLVPEGELDSFLDEVGKLVATYYTLEDPTRFDAEACE 196 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 VE EL +G LRG++DRIDVA TGE+RVVDYKTGKAP R E KA+FQMKFYA+ Sbjct 197 VYVETELENGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP---REFTESKALFQMKFYALV 253 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L R+RG+ P +LRLIYLA G +L Y+PD DEL+RFE+TL AIW+AI +AG TGDFRP P Sbjct 254 LLRTRGIVPAQLRLIYLASGSILTYAPDHDELIRFERTLSAIWKAILAAGATGDFRPKPG 313 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWP----TEPAA 278 +LCDWC H+ CP+FGGTPPPYPGWP TEP A Sbjct 314 KLCDWCDHKSLCPSFGGTPPPYPGWPDLLSTEPVA 348 >gi|226306669|ref|YP_002766629.1| hypothetical protein RER_31820 [Rhodococcus erythropolis PR4] gi|226185786|dbj|BAH33890.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=291 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 170/275 (62%), Positives = 204/275 (75%), Gaps = 7/275 (2%) Query 8 PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRS 67 P RPALSPSRA D+KQCPLLYRFRA+DR+PE + AQ+RG+VVHAALE L+ LP G R Sbjct 15 PRSRPALSPSRAGDYKQCPLLYRFRAVDRIPETPTRAQVRGTVVHAALEALFALPTGHRV 74 Query 68 PDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCE 127 PD A LV+ AW+++ A PE A + + L + LV+ YY LEDPTRFD + CE Sbjct 75 PDRAAELVRPAWERVSAESPEAADLIPEDELDAFLGEVGKLVATYYTLEDPTRFDAEACE 134 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 VE EL +G LRG++DRIDVA TGE+RVVDYKTGKAP R E KA+FQMKFYA+ Sbjct 135 VYVETELENGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP---REFTESKALFQMKFYALV 191 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L R+RG+ P +LRLIYLA G +L Y+PD DEL+RFE+TL AIW+AI +AG TGDFRP P Sbjct 192 LLRTRGIVPAQLRLIYLASGSILTYAPDHDELIRFERTLSAIWKAILAAGATGDFRPKPG 251 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWP----TEPAA 278 +LCDWC H+ CP+FGGTPPPYPGWP TEP A Sbjct 252 KLCDWCDHKSLCPSFGGTPPPYPGWPDLLSTEPVA 286 >gi|3790598|gb|AAC68687.1| unknown [Rhodococcus erythropolis] Length=323 Score = 344 bits (882), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 169/275 (62%), Positives = 203/275 (74%), Gaps = 7/275 (2%) Query 8 PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRS 67 P RPALSPSRA D+KQCPLLYRFRA+DR+PE + AQ+RG+VVHAALE L+ LP G R Sbjct 47 PRSRPALSPSRAGDYKQCPLLYRFRAVDRIPETPTRAQVRGTVVHAALEALFALPTGHRV 106 Query 68 PDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCE 127 PD A LV+ AW+++ A PE A + + L + LV+ YY LEDPTRFD + CE Sbjct 107 PDRAAELVRPAWERVSAESPEAAELIPEDELDAFLGEVGKLVATYYTLEDPTRFDAEACE 166 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 VE EL +G LRG++DRIDVA TGE+RVVDYKTGKAP R E KA+FQMKFYA+ Sbjct 167 VYVETELENGVRLRGFVDRIDVAPTGEVRVVDYKTGKAP---REFTESKALFQMKFYALV 223 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L R+RG+ P +LRLIYL G +L Y+PD DEL+RFE+TL AIW+AI +AG TGDFRP P Sbjct 224 LLRTRGIVPAQLRLIYLPSGSILTYAPDHDELIRFERTLSAIWKAILAAGATGDFRPKPG 283 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWP----TEPAA 278 +LCDWC H+ CP+FGGTPPPYPGWP TEP A Sbjct 284 KLCDWCDHKSLCPSFGGTPPPYPGWPDLLSTEPVA 318 >gi|467028|gb|AAA17213.1| u2126v [Mycobacterium leprae] Length=212 Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 163/195 (84%), Positives = 176/195 (91%), Gaps = 0/195 (0%) Query 79 WDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEVELADGT 138 W+QM+AAE +L GELD Q TQLL++AR L+SGYYRLEDPTRF+PQ CEQRVEVELADG Sbjct 2 WNQMIAAERDLDGELDAKQRTQLLDEARTLLSGYYRLEDPTRFNPQSCEQRVEVELADGL 61 Query 139 LLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFRSRGVPPTR 198 LLRG+IDRIDVAATGELRVVDYKTGKAPPAA+ALAEFKAMFQMKFYA+ L SRGV P R Sbjct 62 LLRGFIDRIDVAATGELRVVDYKTGKAPPAAQALAEFKAMFQMKFYALTLLHSRGVLPAR 121 Query 199 LRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLCDWCPHQQR 258 LRLIYLAD QLLDY+PDRDELLRF KTLMAIWR IQ +GETGDFRPNPSRLC WCPHQ+ Sbjct 122 LRLIYLADSQLLDYAPDRDELLRFGKTLMAIWRTIQFSGETGDFRPNPSRLCGWCPHQEH 181 Query 259 CPAFGGTPPPYPGWP 273 CPAFGGTPPPYPGWP Sbjct 182 CPAFGGTPPPYPGWP 196 >gi|257056217|ref|YP_003134049.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017] gi|256586089|gb|ACU97222.1| RecB family exonuclease [Saccharomonospora viridis DSM 43017] Length=333 Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 163/267 (62%), Positives = 199/267 (75%), Gaps = 7/267 (2%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA+DFKQCPLLYRFRA+DRLPE + AQ+RG++VH+ LE+L+GLP R+P+ Sbjct 56 RPALSPSRASDFKQCPLLYRFRAVDRLPEPPTKAQVRGTLVHSVLERLFGLPRADRTPER 115 Query 71 ARSLVQRAWDQMVAAEPE----LAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCC 126 AR L++ W Q+ PE + E + Q L A L+ Y++LEDP R DP+ C Sbjct 116 ARELLRPTWSQLSEECPEWMELFSEENFDKELNQWLTSAEKLLDSYFKLEDPRRLDPEAC 175 Query 127 EQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAV 186 E VE EL+ G LLRGYIDR+DVA TGE+RVVDYKTG AP R + E KAMFQMKFYAV Sbjct 176 ELHVETELSSGVLLRGYIDRVDVAPTGEIRVVDYKTGAAP---REIGEAKAMFQMKFYAV 232 Query 187 ALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNP 246 L+R RG+ P +L+L+YL+DGQ L Y+PD EL RFE+TL AIW+AI AG+TGDFRPNP Sbjct 233 VLWRLRGIVPRQLKLMYLSDGQALAYTPDEPELARFERTLEAIWQAILRAGKTGDFRPNP 292 Query 247 SRLCDWCPHQQRCPAFGGTPPPYPGWP 273 S+LC WC HQ CP+FGGTPP YPGWP Sbjct 293 SKLCGWCSHQALCPSFGGTPPEYPGWP 319 >gi|333919661|ref|YP_004493242.1| hypothetical protein AS9A_1993 [Amycolicicoccus subflavus DQS3-9A1] gi|333481882|gb|AEF40442.1| hypothetical protein AS9A_1993 [Amycolicicoccus subflavus DQS3-9A1] Length=308 Score = 332 bits (850), Expect = 5e-89, Method: Compositional matrix adjust. Identities = 161/261 (62%), Positives = 197/261 (76%), Gaps = 4/261 (1%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 ALSPSRA DFKQCPLLYRFRAIDRLPEA S AQ+RG+VVHA LE LY LPA R TA Sbjct 47 ALSPSRANDFKQCPLLYRFRAIDRLPEAPSRAQVRGTVVHATLEALYELPAAQRQRGTAT 106 Query 73 SLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEV 132 SL+Q W+Q A PELA EL + + + LV Y+ +EDPTRFDP+ CE VE Sbjct 107 SLIQPVWEQACAETPELA-ELIGDERSTFFGEVEQLVQRYFEMEDPTRFDPESCELLVEA 165 Query 133 ELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFRSR 192 + DG LRG++DRIDVA TGE+RVVDYKTG++P ++ +A+FQMKFYA+ ++R R Sbjct 166 QTEDGVALRGFVDRIDVAPTGEVRVVDYKTGRSPSE---MSTGQALFQMKFYALVIYRVR 222 Query 193 GVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLCDW 252 GV PT+L+LIYL DG+ L Y+P+ ELLRFE+TL AIW AI++AG++GDFRP+P RLCDW Sbjct 223 GVVPTQLKLIYLGDGRTLTYAPEAGELLRFERTLSAIWSAIRAAGDSGDFRPSPGRLCDW 282 Query 253 CPHQQRCPAFGGTPPPYPGWP 273 C H+ CP+FGGTPP YPGWP Sbjct 283 CDHKSHCPSFGGTPPAYPGWP 303 >gi|300786788|ref|YP_003767079.1| RecB family exonuclease [Amycolatopsis mediterranei U32] gi|299796302|gb|ADJ46677.1| putative RecB family exonuclease [Amycolatopsis mediterranei U32] gi|340528272|gb|AEK43477.1| RecB family exonuclease [Amycolatopsis mediterranei S699] Length=299 Score = 328 bits (841), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 165/271 (61%), Positives = 196/271 (73%), Gaps = 7/271 (2%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA+DFKQCPLLYRFRA+DRLPE + AQLRG++VH+ LE+L+ LPA R P Sbjct 23 RPALSPSRASDFKQCPLLYRFRAVDRLPEVPTKAQLRGTLVHSVLERLFALPAAERVPAQ 82 Query 71 ARSLVQRAWDQMVAAEPELAGELDPGQP---TQLLEDARALVSGYYRLEDPTRFDPQCCE 127 AR L+ AW + A PE D +P L A L+ Y+ LEDP R +P+ CE Sbjct 83 ARELLGPAWTDLSADRPEWTELFDGEKPDDHADWLRSAEKLLDAYFELEDPRRLEPEACE 142 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 VE+EL G LLRGYIDR+DVA TGE+RVVDYKTG AP R + E KAMFQMKFYAV Sbjct 143 LHVEIELGSGVLLRGYIDRLDVAPTGEIRVVDYKTGAAP---REIGEAKAMFQMKFYAVV 199 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L+R RG+ P +L+L+YL DGQ L Y+PD ELLRFE+TL AIW+AI AG+TGDFR N S Sbjct 200 LWRLRGIVPRQLKLMYLTDGQSLAYTPDEAELLRFERTLEAIWQAILKAGKTGDFRANKS 259 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWPTEPAA 278 +LC+WC HQ CP +GGTPP YPGWP EP A Sbjct 260 KLCNWCDHQAHCPEYGGTPPAYPGWP-EPDA 289 >gi|302527193|ref|ZP_07279535.1| RecB family exonuclease [Streptomyces sp. AA4] gi|302436088|gb|EFL07904.1| RecB family exonuclease [Streptomyces sp. AA4] Length=296 Score = 328 bits (840), Expect = 8e-88, Method: Compositional matrix adjust. Identities = 160/266 (61%), Positives = 195/266 (74%), Gaps = 6/266 (2%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA+DFKQCPLLYRFRA+DRLPE + AQLRG++VHA LE+L+ LPA R Sbjct 20 RPALSPSRASDFKQCPLLYRFRAVDRLPEVPTRAQLRGTLVHAVLERLFALPAAERVAPR 79 Query 71 ARSLVQRAWDQMVAAEPE---LAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCE 127 A+ L+ W ++ A PE L + +PG+ + L A L+ Y+ LEDP R +P+ CE Sbjct 80 AKELLAPTWTELSAESPEWTELFADGEPGETDKWLASAEKLLDSYFELEDPRRLEPEACE 139 Query 128 QRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVA 187 VE+EL G LLRGYIDR+DVA TGE+RVVDYKTG AP R + E KA+FQMKFYA+ Sbjct 140 LHVEIELGSGVLLRGYIDRVDVAPTGEIRVVDYKTGAAP---REIGEAKALFQMKFYALV 196 Query 188 LFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPS 247 L+R RGV P +L+L+YL DGQ L Y+PD EL+RFE+TL AIW+AI AG+TGDFRPN Sbjct 197 LWRLRGVVPRQLKLMYLTDGQSLAYTPDEAELVRFERTLEAIWQAILKAGKTGDFRPNKG 256 Query 248 RLCDWCPHQQRCPAFGGTPPPYPGWP 273 +LC WC HQ CP FGGTPP YPGWP Sbjct 257 KLCSWCDHQAHCPEFGGTPPEYPGWP 282 >gi|54025152|ref|YP_119394.1| hypothetical protein nfa31830 [Nocardia farcinica IFM 10152] gi|54016660|dbj|BAD58030.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=302 Score = 314 bits (805), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 158/260 (61%), Positives = 194/260 (75%), Gaps = 3/260 (1%) Query 14 LSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTARS 73 LSPSRA DFKQCPL YR RAIDR+PE S +RG+VVHA LE LYGLPA R D A + Sbjct 29 LSPSRAMDFKQCPLKYRLRAIDRIPEPPSRHAVRGTVVHAVLEDLYGLPAAERGRDRAAA 88 Query 74 LVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEVE 133 L++ AW +++A PE+A + P L + ALV YYRLEDPTRF P+ E RVEVE Sbjct 89 LIEPAWARVLAERPEIAELVAEDGPAAFLAEVAALVDTYYRLEDPTRFSPESREARVEVE 148 Query 134 LADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFRSRG 193 L DG LLRG++DRIDVA TGELRVVDYKTG+AP A+ E KA+FQ+KFYA+ + R+RG Sbjct 149 LGDGVLLRGFVDRIDVAPTGELRVVDYKTGRAPGPAQ---ETKALFQLKFYALVVLRTRG 205 Query 194 VPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLCDWC 253 + P +LRLIYLADGQ+L Y+PD +EL RFE+TL A+W AI+ AG TG+F P+ S LC +C Sbjct 206 ILPAQLRLIYLADGQILTYAPDAEELDRFERTLAALWTAIREAGRTGEFPPSTSWLCGYC 265 Query 254 PHQQRCPAFGGTPPPYPGWP 273 ++ CPA+GGTPP YPGWP Sbjct 266 DYKPLCPAYGGTPPEYPGWP 285 >gi|134098811|ref|YP_001104472.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338] gi|291005834|ref|ZP_06563807.1| RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338] gi|133911434|emb|CAM01547.1| putative RecB family exonuclease [Saccharopolyspora erythraea NRRL 2338] Length=293 Score = 308 bits (789), Expect = 6e-82, Method: Compositional matrix adjust. Identities = 162/262 (62%), Positives = 198/262 (76%), Gaps = 8/262 (3%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RPALSPSRA DFKQCPLLYRFRA+DRLPE + AQ+RG+VVH+ LE+L+ LP R P+ Sbjct 17 RPALSPSRAGDFKQCPLLYRFRAVDRLPETPTRAQVRGTVVHSVLERLFSLPTAERGPER 76 Query 71 ARSLVQRAWDQMVAAEPELAGELDPG----QPTQLLEDARALVSGYYRLEDPTRFDPQCC 126 AR+L+ AW+ ++AAEP L GEL G + + L+ A AL+ Y+ LEDP R +P+ C Sbjct 77 ARALLAPAWEDLLAAEPGL-GELFDGAGDPELARWLDSANALLDSYFELEDPRRLEPEAC 135 Query 127 EQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAV 186 E RVE EL G LLRG+IDR+DVA TGE+R+VDYKTG AP R + E KAMFQMKFYA+ Sbjct 136 ELRVETELESGVLLRGFIDRVDVAPTGEIRLVDYKTGAAP---REIGEAKAMFQMKFYAL 192 Query 187 ALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNP 246 L+R+RG P +L L+YL+D Q L Y+PD EL RFE+TL AIW+AI AG TGDFRPNP Sbjct 193 VLWRTRGEIPRQLLLMYLSDKQSLAYTPDEAELRRFERTLEAIWQAILKAGRTGDFRPNP 252 Query 247 SRLCDWCPHQQRCPAFGGTPPP 268 SRLCD+C H+ CPAFGGTPPP Sbjct 253 SRLCDYCDHKPLCPAFGGTPPP 274 >gi|289750713|ref|ZP_06510091.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691300|gb|EFD58729.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=174 Score = 308 bits (788), Expect = 7e-82, Method: Compositional matrix adjust. Identities = 156/156 (100%), Positives = 156/156 (100%), Gaps = 0/156 (0%) Query 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG Sbjct 1 MADQPDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYG 60 Query 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR Sbjct 61 LPAGLRSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTR 120 Query 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELR 156 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELR Sbjct 121 FDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELR 156 >gi|256376349|ref|YP_003100009.1| RecB family exonuclease-like protein [Actinosynnema mirum DSM 43827] gi|255920652|gb|ACU36163.1| RecB family exonuclease-like protein [Actinosynnema mirum DSM 43827] Length=297 Score = 308 bits (788), Expect = 8e-82, Method: Compositional matrix adjust. Identities = 163/263 (62%), Positives = 187/263 (72%), Gaps = 6/263 (2%) Query 6 DPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGL 65 D P RPALSPSRA DFKQCPLLYRFRA+DRLPE + AQ+RG+VVHA LE L+ LPA Sbjct 16 DRPVRRPALSPSRAGDFKQCPLLYRFRAVDRLPEKPTKAQVRGTVVHAVLEDLFALPAAE 75 Query 66 RSPDTARSLVQRAWDQMVAAEPELAGELDPGQPTQ---LLEDARALVSGYYRLEDPTRFD 122 R P+ AR LV+ AW ++ PE A Q + L AR L+ GY+ LEDP RFD Sbjct 76 RVPERARELVEPAWARVRQERPEFAELFGADQDEEQADWLTSARELLEGYFGLEDPRRFD 135 Query 123 PQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMK 182 P+ E VE EL G LLRGY+DR+DVA TGE+RVVDYKTG AP R E KA+FQMK Sbjct 136 PESRELLVEWELPSGVLLRGYVDRVDVAPTGEIRVVDYKTGAAP---REHVEGKALFQMK 192 Query 183 FYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDF 242 FYA+ L+R RGV P +LRL+YLAD Q L YSPD EL RFE+TL AIW AI AG TGDF Sbjct 193 FYALVLWRQRGVVPRQLRLMYLADRQALAYSPDEGELARFERTLEAIWEAILRAGRTGDF 252 Query 243 RPNPSRLCDWCPHQQRCPAFGGT 265 RPNPSRLCD+C H+ CPAF GT Sbjct 253 RPNPSRLCDYCDHKALCPAFDGT 275 >gi|317506021|ref|ZP_07963851.1| hypothetical protein HMPREF9336_00220 [Segniliparus rugosus ATCC BAA-974] gi|316255679|gb|EFV14919.1| hypothetical protein HMPREF9336_00220 [Segniliparus rugosus ATCC BAA-974] Length=288 Score = 305 bits (782), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 156/269 (58%), Positives = 189/269 (71%), Gaps = 4/269 (1%) Query 8 PTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRS 67 P+ R ALSPSRA+DF+QCPLLYR RAIDR+P+ + A +RG++VHAALE L LPA R+ Sbjct 10 PSRRLALSPSRASDFRQCPLLYRLRAIDRIPQPPTLAMVRGTLVHAALEDLLALPAESRT 69 Query 68 PDTARSLVQRAWDQMVAAEPELAG-ELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCC 126 D A LV +W+++ E +LD QL E ++ L++GY+ LEDP P C Sbjct 70 LDAAHGLVAPSWERVSGEMAEDNRLDLDEQGLEQLFEQSKTLLAGYFALEDPASVTPHAC 129 Query 127 EQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAV 186 E RVEVEL LRG++DR+D A GELRVVDYKTG+AP L E KA+FQMKFYA+ Sbjct 130 ELRVEVELEPDVPLRGFVDRVDELAGGELRVVDYKTGRAPGG---LYEAKALFQMKFYAL 186 Query 187 ALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNP 246 AL++ RGV P LRL+YL G L Y P+ DEL RF +TL+AIWRAIQ+AG TGDFRPNP Sbjct 187 ALWKLRGVVPNELRLMYLGSGDTLTYEPEPDELDRFSRTLVAIWRAIQAAGRTGDFRPNP 246 Query 247 SRLCDWCPHQQRCPAFGGTPPPYPGWPTE 275 LC WC HQ RCPAFG TPP YPGWP E Sbjct 247 GPLCKWCEHQSRCPAFGNTPPEYPGWPDE 275 >gi|343927944|ref|ZP_08767410.1| hypothetical protein GOALK_099_00760 [Gordonia alkanivorans NBRC 16433] gi|343762167|dbj|GAA14336.1| hypothetical protein GOALK_099_00760 [Gordonia alkanivorans NBRC 16433] Length=293 Score = 300 bits (767), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 148/250 (60%), Positives = 185/250 (74%), Gaps = 4/250 (1%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 ALSPSRA DFKQCPLLYRFRAIDR PE +AAQ RG+VVHAALE L+ +PA LR+ D+A Sbjct 32 ALSPSRAADFKQCPLLYRFRAIDRFPETPTAAQTRGTVVHAALENLFDMPAELRTQDSAE 91 Query 73 SLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEV 132 LV+ AW + +P+LA +D G + A L++ YY +E+PT FD E+ VE+ Sbjct 92 LLVEGAWAALCEEDPQLARVIDEGGQAAFIAGAHKLIATYYTMENPTAFDADSVEEHVEI 151 Query 133 ELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFRSR 192 E AD L+RG+IDRIDVA TGE+RVVDYKTG++P A E KA+FQMKFYA+A+ R+R Sbjct 152 E-ADDMLMRGFIDRIDVAPTGEIRVVDYKTGRSPGEAY---EAKALFQMKFYALAILRTR 207 Query 193 GVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLCDW 252 GV P RL+L+YL+DGQ L Y PD DELLRFE+TL AIW+AI++ +GDFRP SR+C + Sbjct 208 GVVPARLQLMYLSDGQQLIYHPDHDELLRFERTLRAIWQAIRTGVASGDFRPRKSRMCRF 267 Query 253 CPHQQRCPAF 262 C HQ RCP F Sbjct 268 CEHQSRCPEF 277 >gi|296394679|ref|YP_003659563.1| RecB family exonuclease [Segniliparus rotundus DSM 44985] gi|296181826|gb|ADG98732.1| RecB family exonuclease [Segniliparus rotundus DSM 44985] Length=294 Score = 299 bits (765), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 153/266 (58%), Positives = 187/266 (71%), Gaps = 4/266 (1%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 R ALSPSRA+DF+QCPLLYR RAIDR+P+ + A +RG++VHAALE+L LPA R+ D Sbjct 13 RLALSPSRASDFRQCPLLYRLRAIDRIPQPPTLAMVRGTLVHAALEELLALPAESRTLDA 72 Query 71 ARSLVQRAWDQMVAAEPELAG-ELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQR 129 A L+ +W ++ PE +LD +QL E ++ L++ Y+ LEDP R P CE R Sbjct 73 AAELIAPSWQRVSGEMPEDHRLDLDEHGLSQLFEQSKTLLAMYFALEDPARVTPSACELR 132 Query 130 VEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALF 189 VEV+L LRG++DR+D A GELRVVDYKTG+AP E KA+FQMKFYA+AL+ Sbjct 133 VEVDLEPDVPLRGFVDRVDELADGELRVVDYKTGRAPGGP---YEAKALFQMKFYALALW 189 Query 190 RSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRL 249 + RGV P LRL+YL G L Y PD EL RF +TL+AIWRAIQ+AG TGDFRPNP L Sbjct 190 KLRGVVPQELRLMYLGSGDTLTYEPDPGELDRFSRTLVAIWRAIQTAGRTGDFRPNPGPL 249 Query 250 CDWCPHQQRCPAFGGTPPPYPGWPTE 275 C WC HQ RCPAFG TPP YPGWP E Sbjct 250 CKWCEHQSRCPAFGNTPPEYPGWPDE 275 >gi|330468532|ref|YP_004406275.1| RecB family exonuclease [Verrucosispora maris AB-18-032] gi|328811503|gb|AEB45675.1| RecB family exonuclease [Verrucosispora maris AB-18-032] Length=320 Score = 291 bits (744), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 148/269 (56%), Positives = 189/269 (71%), Gaps = 6/269 (2%) Query 5 PDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAG 64 P PPT R +LSPSRA DFK CPLLYRFR+IDRLPE + Q RG++VHA LE+L+ LPA Sbjct 32 PLPPTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQARGTLVHAVLERLFDLPAA 91 Query 65 LRSPDTARSLVQRAWDQMVAAEPELAGEL-DPG--QPTQLLEDARALVSGYYRLEDPTRF 121 R+P A LV WD++V +PELAG D G + L A L+ GY+ +EDP R Sbjct 92 GRTPQAAGDLVAPQWDRLVTEQPELAGLFTDDGTVDAVEFLRSAATLLEGYFSVEDPRRL 151 Query 122 DPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 181 +P E + + + L+RGY+DR+DVA G LRVVDYKTG AP R E +A+FQ+ Sbjct 152 EPAERESLISAVIDEELLIRGYLDRLDVAPDGALRVVDYKTGGAP---REAFEARALFQL 208 Query 182 KFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD 241 KFYA+ L+R+RGV P LRL+YL D ++ DYSPD +EL+RFE+T++A+WRAI+ A D Sbjct 209 KFYALVLWRTRGVVPRVLRLLYLRDAEVCDYSPDAEELVRFERTVVALWRAIEQATAAQD 268 Query 242 FRPNPSRLCDWCPHQQRCPAFGGTPPPYP 270 FRP PSRLCDWC HQ CP++GGTPPP+P Sbjct 269 FRPRPSRLCDWCSHQALCPSYGGTPPPFP 297 >gi|262202382|ref|YP_003273590.1| RecB family exonuclease-like protein [Gordonia bronchialis DSM 43247] gi|262085729|gb|ACY21697.1| RecB family exonuclease-like protein [Gordonia bronchialis DSM 43247] Length=295 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 150/252 (60%), Positives = 186/252 (74%), Gaps = 4/252 (1%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 ALSPSRA DFKQCPLLYR+RAIDR E + AQ RG+VVHAALE L+ +PA LR+ ++A Sbjct 33 ALSPSRAADFKQCPLLYRYRAIDRFAETPTPAQTRGTVVHAALENLFDMPAELRTQESAD 92 Query 73 SLVQRAWDQMVAAEPELAGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVEV 132 LV+ AW + A+P+LA + +Q L DA L++ YY +E+PT F+ E VE+ Sbjct 93 LLVEGAWGALCEADPDLARVVADVGESQFLADAHKLIATYYTMENPTAFEADAVEHHVEL 152 Query 133 ELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFRSR 192 E ++ LRG+IDRIDVA TGELRVVDYKTG+AP A E +A+FQMKFYA+A+ R+R Sbjct 153 E-SEQVRLRGFIDRIDVAPTGELRVVDYKTGRAPGEA---FESRALFQMKFYALAILRTR 208 Query 193 GVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLCDW 252 GV P RL+L+YLADGQ L Y+PDRDEL RFE+TL+AIWRAI+ A TGDFRP SRLC Sbjct 209 GVVPHRLQLMYLADGQQLTYTPDRDELERFERTLIAIWRAIREAVATGDFRPKRSRLCSL 268 Query 253 CPHQQRCPAFGG 264 C H+ RCP FGG Sbjct 269 CEHKTRCPEFGG 280 >gi|315506179|ref|YP_004085066.1| hypothetical protein ML5_5448 [Micromonospora sp. L5] gi|315412798|gb|ADU10915.1| hypothetical protein ML5_5448 [Micromonospora sp. L5] Length=300 Score = 286 bits (732), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 145/264 (55%), Positives = 185/264 (71%), Gaps = 6/264 (2%) Query 5 PDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAG 64 P P T R +LSPSRA DFK CPLLYRFR+IDRLPE + Q RG++VHA LE+L+ LPA Sbjct 12 PAPVTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQARGTLVHAVLERLFDLPAA 71 Query 65 LRSPDTARSLVQRAWDQMVAAEPELAGELDPGQ---PTQLLEDARALVSGYYRLEDPTRF 121 R+P++A LV WD++V EPELA G P + L A AL+ GY+ +EDP R Sbjct 72 ARTPESAGDLVAPQWDRLVTEEPELATLFADGDAVGPQEFLRSATALLDGYFAVEDPRRL 131 Query 122 DPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 181 +P E + + D L+RGY+DR+DVA G LRVVDYKTG AP R E +A+FQ+ Sbjct 132 EPAEREALISAVVDDELLIRGYLDRLDVAPDGALRVVDYKTGGAP---REAFEARALFQL 188 Query 182 KFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD 241 KFYA+ L+R+RGV P LRL+YL D ++ DY+PD DEL+RFE+T++A+WRAI+ A D Sbjct 189 KFYALVLWRTRGVVPRVLRLLYLKDAEVCDYAPDADELVRFERTVVALWRAIEQATARQD 248 Query 242 FRPNPSRLCDWCPHQQRCPAFGGT 265 FRP PSRLCDWC HQ CP++GGT Sbjct 249 FRPRPSRLCDWCNHQALCPSYGGT 272 >gi|302867411|ref|YP_003836048.1| hypothetical protein Micau_2940 [Micromonospora aurantiaca ATCC 27029] gi|302570270|gb|ADL46472.1| hypothetical protein Micau_2940 [Micromonospora aurantiaca ATCC 27029] Length=300 Score = 285 bits (730), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 145/264 (55%), Positives = 185/264 (71%), Gaps = 6/264 (2%) Query 5 PDPPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAG 64 P P T R +LSPSRA DFK CPLLYRFR+IDRLPE + Q RG++VHA LE+L+ LPA Sbjct 12 PAPVTVRASLSPSRAADFKTCPLLYRFRSIDRLPERPTVEQARGTLVHAVLERLFDLPAA 71 Query 65 LRSPDTARSLVQRAWDQMVAAEPELAGELDPGQ---PTQLLEDARALVSGYYRLEDPTRF 121 R+P++A LV WD++V EPELA G P + L A AL+ GY+ +EDP R Sbjct 72 ARTPESAGDLVVPQWDRLVTEEPELATLFADGDAVGPQEFLRSATALLDGYFAVEDPRRL 131 Query 122 DPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQM 181 +P E + + D L+RGY+DR+DVA G LRVVDYKTG AP R E +A+FQ+ Sbjct 132 EPAEREALISAVVDDELLIRGYLDRLDVAPDGALRVVDYKTGGAP---REAFEARALFQL 188 Query 182 KFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGD 241 KFYA+ L+R+RGV P LRL+YL D ++ DY+PD DEL+RFE+T++A+WRAI+ A D Sbjct 189 KFYALVLWRTRGVVPRVLRLLYLKDAEVCDYAPDADELVRFERTVVALWRAIEQATARQD 248 Query 242 FRPNPSRLCDWCPHQQRCPAFGGT 265 FRP PSRLCDWC HQ CP++GGT Sbjct 249 FRPRPSRLCDWCNHQALCPSYGGT 272 >gi|238064528|ref|ZP_04609237.1| hypothetical protein MCAG_05494 [Micromonospora sp. ATCC 39149] gi|237886339|gb|EEP75167.1| hypothetical protein MCAG_05494 [Micromonospora sp. ATCC 39149] Length=305 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 143/262 (55%), Positives = 185/262 (71%), Gaps = 6/262 (2%) Query 7 PPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLR 66 P T R +LSPSRA DFK CPLLYRFR+IDRLPE S Q+RG++VHA LE+L+ LPA R Sbjct 19 PATVRASLSPSRAADFKTCPLLYRFRSIDRLPERPSVEQVRGTLVHAVLERLFDLPAAGR 78 Query 67 SPDTARSLVQRAWDQMVAAEPELAGELDPGQP---TQLLEDARALVSGYYRLEDPTRFDP 123 +P+ A LV WD++VA +PELA D G P + L A L+ GY+ +EDP R +P Sbjct 79 TPEAAGDLVAPQWDRLVAEQPELAALFDAGDPDGTAEFLRSAAGLLEGYFAVEDPRRLEP 138 Query 124 QCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKF 183 E + + D L+RGY+DR+DVA G LRVVDYKTG AP R E +A+FQ+KF Sbjct 139 AEREALISAVVDDELLIRGYLDRLDVAPDGALRVVDYKTGGAP---REAFEARALFQLKF 195 Query 184 YAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFR 243 YA+ L+R+RGV P LRL+YL D ++ DY+PD +EL RFE+T++A+W+AI++A DFR Sbjct 196 YALVLWRTRGVVPRVLRLLYLKDAEVCDYTPDAEELARFERTVVALWQAIEAATARQDFR 255 Query 244 PNPSRLCDWCPHQQRCPAFGGT 265 P PSRLCDWC H+ CP+FGGT Sbjct 256 PRPSRLCDWCNHRALCPSFGGT 277 >gi|159037949|ref|YP_001537202.1| hypothetical protein Sare_2353 [Salinispora arenicola CNS-205] gi|157916784|gb|ABV98211.1| conserved hypothetical protein [Salinispora arenicola CNS-205] Length=303 Score = 278 bits (712), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 144/266 (55%), Positives = 186/266 (70%), Gaps = 5/266 (1%) Query 7 PPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLR 66 P T R +LSPSRA DFK CPLLYRFR+IDRLPE S Q RG++VHA LE+L+ LP R Sbjct 18 PATLRASLSPSRAADFKTCPLLYRFRSIDRLPEQPSVEQARGTLVHAVLERLFDLPPAGR 77 Query 67 SPDTARSLVQRAWDQMVAAEPELAGELDPGQP--TQLLEDARALVSGYYRLEDPTRFDPQ 124 +P A LV W+++VA +PELA + L A L+ GY+ +EDP R +P Sbjct 78 TPTAAGDLVAPQWERLVAEQPELAALFAADAEARAEFLRSATGLLRGYFAVEDPRRLEPA 137 Query 125 CCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFY 184 E + + + L+RGY+DR+DVA G LRVVDYKTG AP R E +A+FQ+KFY Sbjct 138 ERESLISAVVDEELLIRGYLDRLDVAPDGALRVVDYKTGGAP---REAFEARALFQLKFY 194 Query 185 AVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRP 244 A+ L+R+RGV P LRL+YL D ++ DY+PD DEL+RFE+T++A+WRAI++A DFRP Sbjct 195 ALVLWRTRGVVPRVLRLLYLKDAEVCDYAPDADELVRFERTVVALWRAIEAATAAQDFRP 254 Query 245 NPSRLCDWCPHQQRCPAFGGTPPPYP 270 PSRLCDWC HQ+ CP+FGGTPPP+P Sbjct 255 RPSRLCDWCSHQRLCPSFGGTPPPFP 280 >gi|284991128|ref|YP_003409682.1| hypothetical protein Gobs_2676 [Geodermatophilus obscurus DSM 43160] gi|284064373|gb|ADB75311.1| conserved hypothetical protein [Geodermatophilus obscurus DSM 43160] Length=320 Score = 276 bits (706), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 155/285 (55%), Positives = 189/285 (67%), Gaps = 23/285 (8%) Query 11 RPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDT 70 RP+LSPSRA DFK CPLLYRFR IDRLPE S A +RG++VH+ LE+LY LPA R+ + Sbjct 35 RPSLSPSRAADFKTCPLLYRFRTIDRLPERKSLAAVRGTLVHSVLERLYDLPARRRTAEA 94 Query 71 ARSLVQRAWDQMVAAEPELAGELDPG---------QPTQL---LEDARALVSGYYRLEDP 118 AR LV AW+++ A PE+A G QP L L A LV Y+ LEDP Sbjct 95 ARELVAPAWEEL-RANPEVAALFTEGGTGDDAAAEQPPSLEAWLASAGELVETYFSLEDP 153 Query 119 TRFDPQCCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAM 178 +R +P E+ VEV L DG LLRGY+DR+DVA G LRVVDYKTG P R E KA+ Sbjct 154 SRIEPHGREELVEVTLPDGLLLRGYVDRLDVAPNGALRVVDYKTGSMP---REAFEGKAL 210 Query 179 FQMKFYAVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGE 238 FQMKFYA+ L+R+RGV ++L+L+YL +G L Y+P+ EL+RFE+TL AIW AI+ A Sbjct 211 FQMKFYALVLWRTRGVVASQLKLLYLGNGDALTYAPEEAELVRFERTLQAIWAAIERAVA 270 Query 239 TGDFRPNPSRLCDWCPHQQRCPAFGGT-------PPPYPGWPTEP 276 TGDFRPN +RLCDWC HQ CP+FGGT GWPT P Sbjct 271 TGDFRPNRTRLCDWCDHQALCPSFGGTPPPFPAAAAAAAGWPTLP 315 >gi|145594767|ref|YP_001159064.1| hypothetical protein Strop_2236 [Salinispora tropica CNB-440] gi|145304104|gb|ABP54686.1| hypothetical protein Strop_2236 [Salinispora tropica CNB-440] Length=322 Score = 275 bits (702), Expect = 7e-72, Method: Compositional matrix adjust. Identities = 140/261 (54%), Positives = 183/261 (71%), Gaps = 5/261 (1%) Query 7 PPTPRPALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLR 66 P T R +LSPSRA DFK CPLLYRFR+IDRLPE + Q RG++VHA LE+L+ L R Sbjct 37 PATVRASLSPSRAADFKTCPLLYRFRSIDRLPEQPTVEQARGTLVHAVLERLFDLSPAGR 96 Query 67 SPDTARSLVQRAWDQMVAAEPELAGEL-DPGQP-TQLLEDARALVSGYYRLEDPTRFDPQ 124 +P A LV W+++VA +PELA D G+ + L A L+ GY+ +EDP R +P Sbjct 97 TPRAASDLVAPQWERLVAEQPELAALFTDDGEARSAFLRSAAGLLQGYFTVEDPRRLEPA 156 Query 125 CCEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFY 184 E + + + L+RGY+DR+DVA G LRVVDYKTG AP R E +A+FQ+KFY Sbjct 157 ERESLISAVVDEELLIRGYLDRLDVAPDGALRVVDYKTGGAP---REAFEARALFQLKFY 213 Query 185 AVALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRP 244 A+ L+R+RGV P LRL+YL D ++ DY+PD DEL+RFE+T++A+WRAI++A DFRP Sbjct 214 ALVLWRTRGVVPRVLRLLYLKDAEVCDYTPDADELVRFERTVVALWRAIEAATAAQDFRP 273 Query 245 NPSRLCDWCPHQQRCPAFGGT 265 PSRLCDWC HQ+ CP+FGGT Sbjct 274 RPSRLCDWCSHQRLCPSFGGT 294 >gi|119716861|ref|YP_923826.1| hypothetical protein Noca_2636 [Nocardioides sp. JS614] gi|119537522|gb|ABL82139.1| conserved hypothetical protein [Nocardioides sp. JS614] Length=299 Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 139/263 (53%), Positives = 183/263 (70%), Gaps = 7/263 (2%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 ALSPSRA DF CPLLYRFR +DRLPE S +RG+VVH LE L+ LPAG R+PD A+ Sbjct 24 ALSPSRAGDFMSCPLLYRFRTVDRLPEPFSPDAVRGTVVHKVLEDLFDLPAGDRTPDRAQ 83 Query 73 SLVQRAWDQMVAAEPELAG----ELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQ 128 ++++ AW+++V A PEL+ + D Q L RA++ Y+ LEDP R +P E Sbjct 84 AMLEPAWERLVEAAPELSELFPVDEDGAQVAAWLASCRAVLERYFTLEDPRRLEPAEREL 143 Query 129 RVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVAL 188 VE L LLRG++DRIDVA G +RVVDYK+G++P + E KA+FQMKFYA+ + Sbjct 144 YVEALLDSRLLLRGFVDRIDVAPDGAIRVVDYKSGRSP---SEMFEAKALFQMKFYALVI 200 Query 189 FRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSR 248 +R+RGV P L+LIYL +G+LL Y PD +LL E+ + AIW+AI+ A E+GD+RP+P R Sbjct 201 WRTRGVVPAMLQLIYLGNGELLRYVPDERDLLATERKIEAIWQAIRRAEESGDWRPSPGR 260 Query 249 LCDWCPHQQRCPAFGGTPPPYPG 271 LCDWC H+ CPA+GGTPPP P Sbjct 261 LCDWCAHRAICPAWGGTPPPIPA 283 >gi|345013966|ref|YP_004816320.1| hypothetical protein Strvi_6658 [Streptomyces violaceusniger Tu 4113] gi|344040315|gb|AEM86040.1| hypothetical protein Strvi_6658 [Streptomyces violaceusniger Tu 4113] Length=316 Score = 271 bits (694), Expect = 6e-71, Method: Compositional matrix adjust. Identities = 144/265 (55%), Positives = 180/265 (68%), Gaps = 10/265 (3%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 +LSPSRA DF +CPLLYRFR ID+LPE SAA RG+VVHA LE+L+ PA R+ AR Sbjct 41 SLSPSRAADFMRCPLLYRFRVIDKLPEKPSAAATRGTVVHAVLERLFDAPAAERTSPRAR 100 Query 73 SLVQRAWDQMVAAEPELA-------GELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQC 125 ++V WD+++AA+PELA G P + + L A+ALV ++ LEDPTR +P Sbjct 101 AMVPGEWDRLLAAKPELAELFQEEDGAPAPDRLAEWLTGAQALVDQWFSLEDPTRLEPAE 160 Query 126 CEQRVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYA 185 E VE EL G LRG IDRID+A TG++R+VDYKTGKAP A +A+FQMKFYA Sbjct 161 RELFVETELESGLRLRGIIDRIDIAPTGDVRIVDYKTGKAPAPQYA---GEALFQMKFYA 217 Query 186 VALFRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPN 245 + L+R RGV P RL+L+YL G +L Y PD EL E+ ++A+W AI+ A ETG F P Sbjct 218 LVLWRLRGVIPRRLQLVYLGSGDVLTYDPDERELRAVERKVLALWEAIRLATETGAFVPR 277 Query 246 PSRLCDWCPHQQRCPAFGGTPPPYP 270 +RLC WC HQ CP FGGTPPPYP Sbjct 278 QTRLCGWCDHQAHCPEFGGTPPPYP 302 >gi|256391609|ref|YP_003113173.1| RecB family exonuclease-like protein [Catenulispora acidiphila DSM 44928] gi|256357835|gb|ACU71332.1| RecB family exonuclease-like protein [Catenulispora acidiphila DSM 44928] Length=351 Score = 268 bits (685), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 137/260 (53%), Positives = 179/260 (69%), Gaps = 5/260 (1%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 ALSPSRA DF CPLL+RFR ID+LPE SAA RG+++HA LE L+ LP G R+P +A Sbjct 57 ALSPSRAADFMTCPLLFRFRVIDKLPERKSAAATRGTLIHAVLEHLFDLPTGQRTPTSAS 116 Query 73 SLVQRAWDQMVAAEPEL-AGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQRVE 131 ++ W++MV A+PEL A + G L+ A L+ Y+RLEDP R +P E V Sbjct 117 GMLSPEWERMVQADPELKALAEEAGGDEAWLKGAVDLLERYFRLEDPNRLEPAERELFVH 176 Query 132 VELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALFRS 191 +ADG LLRG++DR+DVA G LRVVDYKTG+AP A E KA+FQMKFYA+ L+++ Sbjct 177 ARIADGLLLRGFVDRLDVAPNGALRVVDYKTGRAPGPA---FEGKALFQMKFYALVLWKT 233 Query 192 RGVPPTRLRLIYL-ADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSRLC 250 RGV P RL+L+YL + Q++ Y PD +L E+ + A+W AI++A E G++R NPSRLC Sbjct 234 RGVVPRRLQLMYLGGESQIVTYDPDESDLRATERKVAALWSAIRAAAERGEWRANPSRLC 293 Query 251 DWCPHQQRCPAFGGTPPPYP 270 DWC H+ CP FGGTPP P Sbjct 294 DWCDHKALCPEFGGTPPVLP 313 >gi|311900006|dbj|BAJ32414.1| hypothetical protein KSE_66550 [Kitasatospora setae KM-6054] Length=288 Score = 268 bits (684), Expect = 9e-70, Method: Compositional matrix adjust. Identities = 145/262 (56%), Positives = 180/262 (69%), Gaps = 8/262 (3%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 LSPSRA DF CPLLYR R IDRLPE S A RG++VHA LE+L+ P R+P+ AR Sbjct 18 GLSPSRAGDFMTCPLLYRLRVIDRLPEPPSQAATRGTLVHAVLERLFDHPPAERTPERAR 77 Query 73 SLVQRAWDQMVAAEPELAGELDPGQPTQL---LEDARALVSGYYRLEDPTRFDPQCCEQR 129 L++ W++++ PELA EL PG+P +L L DA LV ++RLEDPTR P E Sbjct 78 GLLEPQWERLLGERPELA-ELFPGEPGELAGWLADAGKLVDRWFRLEDPTRLHPVERELY 136 Query 130 VEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVALF 189 VE LA G LRGYIDR+DVA +GE+R+VDYKTG+AP +R E KAMFQMKFYA+ ++ Sbjct 137 VETALASGLPLRGYIDRVDVAPSGEVRLVDYKTGRAP--SRDF-EGKAMFQMKFYALVVW 193 Query 190 RSRGVPPTRLRLIYL-ADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSR 248 R +GV P RL+L+YL G ++ Y PD +LL E+ L A+W AI +A TGDF +R Sbjct 194 RWKGVVPKRLQLVYLGGGGDVVTYDPDEADLLSVERKLEALWEAISAAVATGDFPATRNR 253 Query 249 LCDWCPHQQRCPAFGGTPPPYP 270 LCDWC HQ CP FGGTPPPYP Sbjct 254 LCDWCDHQASCPEFGGTPPPYP 275 >gi|297198514|ref|ZP_06915911.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083] gi|197716174|gb|EDY60208.1| RecB family exonuclease [Streptomyces sviceus ATCC 29083] Length=283 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 138/262 (53%), Positives = 179/262 (69%), Gaps = 7/262 (2%) Query 13 ALSPSRATDFKQCPLLYRFRAIDRLPEATSAAQLRGSVVHAALEQLYGLPAGLRSPDTAR 72 +LSPSRA DF QCPLLYRFR IDRLPE SAA RG++VH+ LE+L+ PAG R+ A+ Sbjct 9 SLSPSRANDFMQCPLLYRFRVIDRLPEKPSAAATRGTLVHSVLERLFDAPAGERTAPVAK 68 Query 73 SLVQRAWDQMVAAEPEL----AGELDPGQPTQLLEDARALVSGYYRLEDPTRFDPQCCEQ 128 SL+ WD++ + PE+ A + D + Q L +A LV ++ LEDPTR +P E Sbjct 69 SLIPGQWDRLRESRPEVVELFADDPDGERLAQWLGEAERLVERWFTLEDPTRLEPAEREL 128 Query 129 RVEVELADGTLLRGYIDRIDVAATGELRVVDYKTGKAPPAARALAEFKAMFQMKFYAVAL 188 VE EL G LRG IDR+DVA TGE+R+VDYKTGKAP A A+FQMKFYA+ + Sbjct 129 FVEAELDSGLRLRGIIDRVDVAPTGEVRIVDYKTGKAPRPEYAEG---ALFQMKFYALVV 185 Query 189 FRSRGVPPTRLRLIYLADGQLLDYSPDRDELLRFEKTLMAIWRAIQSAGETGDFRPNPSR 248 +R + V P RL+L+YL G +L Y P +L R E+ L+A+W AI+ A ++GD+RP P++ Sbjct 186 WRLKNVIPRRLQLVYLGSGDVLTYDPVLADLERVERKLLALWEAIRQATQSGDWRPRPTK 245 Query 249 LCDWCPHQQRCPAFGGTPPPYP 270 LC WC HQ+ CP FGGTPPPYP Sbjct 246 LCGWCDHQEHCPEFGGTPPPYP 267 Lambda K H 0.321 0.137 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 441811207902 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40