BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2126c

Length=256
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|57116949|ref|YP_177862.1|  PE-PGRS family protein [Mycobacteri...   390    1e-106
gi|340627135|ref|YP_004745587.1|  PE-PGRS family protein [Mycobac...   381    5e-104
gi|148823337|ref|YP_001288091.1|  PE-PGRS family protein [Mycobac...  56.2    5e-06 
gi|31793306|ref|NP_855799.1|  hypothetical protein Mb2150c [Mycob...  55.8    5e-06 
gi|289447746|ref|ZP_06437490.1|  predicted protein [Mycobacterium...  52.8    5e-05 


>gi|57116949|ref|YP_177862.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Rv]
 gi|121638008|ref|YP_978232.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148661941|ref|YP_001283464.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 13 more sequence titles
 
gi|224990502|ref|YP_002645189.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798812|ref|YP_003031813.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|339632158|ref|YP_004723800.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|7476141|pir||A70514 hypothetical glycine-rich protein Rv2126c - Mycobacterium tuberculosis 
(strain H37RV)
 gi|38490314|emb|CAE55458.1| PE-PGRS FAMILY PROTEIN [Mycobacterium tuberculosis H37Rv]
 gi|121493656|emb|CAL72131.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Pasteur 
1173P2]
 gi|148506093|gb|ABQ73902.1| PE-PGRS family protein [Mycobacterium tuberculosis H37Ra]
 gi|224773615|dbj|BAH26421.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253320315|gb|ACT24918.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 1435]
 gi|339298667|gb|AEJ50777.1| hypothetical protein CCDC5180_1940 [Mycobacterium tuberculosis 
CCDC5180]
 gi|339331514|emb|CCC27208.1| PE-PGRS family protein [Mycobacterium africanum GM041182]
 gi|341602046|emb|CCC64720.1| PE-PGRS family protein [Mycobacterium bovis BCG str. Moreau RDJ]
 gi|344219949|gb|AEN00580.1| PE-PGRS family protein [Mycobacterium tuberculosis CTRI-2]
Length=256

 Score =  390 bits (1001),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 255/256 (99%), Positives = 256/256 (100%), Gaps = 0/256 (0%)

Query  1    LIGDGANGGPGQPGGPGGLLYGNGGHGGAGAAGQDRGAGNSAGLIGNGGAGGAGGNGGIG  60
            +IGDGANGGPGQPGGPGGLLYGNGGHGGAGAAGQDRGAGNSAGLIGNGGAGGAGGNGGIG
Sbjct  1    MIGDGANGGPGQPGGPGGLLYGNGGHGGAGAAGQDRGAGNSAGLIGNGGAGGAGGNGGIG  60

Query  61   GAGAPGGLGGDGGKGGFADEFTGGFAQGGRGGFGGNGNTGASGGMGGAGGAGGAGGAGGL  120
            GAGAPGGLGGDGGKGGFADEFTGGFAQGGRGGFGGNGNTGASGGMGGAGGAGGAGGAGGL
Sbjct  61   GAGAPGGLGGDGGKGGFADEFTGGFAQGGRGGFGGNGNTGASGGMGGAGGAGGAGGAGGL  120

Query  121  LIGDGGAGGAGGIGGAGGVGGGGGAGGTGGGGVASAFGGGNAFGGRGGDGGDGGDGGTGG  180
            LIGDGGAGGAGGIGGAGGVGGGGGAGGTGGGGVASAFGGGNAFGGRGGDGGDGGDGGTGG
Sbjct  121  LIGDGGAGGAGGIGGAGGVGGGGGAGGTGGGGVASAFGGGNAFGGRGGDGGDGGDGGTGG  180

Query  181  AGGARGAGGAGGAGGWLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKA  240
            AGGARGAGGAGGAGGWLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKA
Sbjct  181  AGGARGAGGAGGAGGWLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKA  240

Query  241  GAPGTQGDSGDPGPPG  256
            GAPGTQGDSGDPGPPG
Sbjct  241  GAPGTQGDSGDPGPPG  256


>gi|340627135|ref|YP_004745587.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
 gi|340005325|emb|CCC44482.1| PE-PGRS family protein [Mycobacterium canettii CIPT 140010059]
Length=256

 Score =  381 bits (979),  Expect = 5e-104, Method: Compositional matrix adjust.
 Identities = 252/256 (99%), Positives = 253/256 (99%), Gaps = 0/256 (0%)

Query  1    LIGDGANGGPGQPGGPGGLLYGNGGHGGAGAAGQDRGAGNSAGLIGNGGAGGAGGNGGIG  60
            +IGDGANGGPGQPGGPGGLLYGNGGHGGAGAAGQDRGAGNSAGLIGNGGAGGAGGNGGIG
Sbjct  1    MIGDGANGGPGQPGGPGGLLYGNGGHGGAGAAGQDRGAGNSAGLIGNGGAGGAGGNGGIG  60

Query  61   GAGAPGGLGGDGGKGGFADEFTGGFAQGGRGGFGGNGNTGASGGMGGAGGAGGAGGAGGL  120
            GAGAPGGLGGDGGKGGFADEFTGGFAQGGRGGFGGNGNTGASGGMGGAGGAGGAGGAGGL
Sbjct  61   GAGAPGGLGGDGGKGGFADEFTGGFAQGGRGGFGGNGNTGASGGMGGAGGAGGAGGAGGL  120

Query  121  LIGDGGAGGAGGIGGAGGVGGGGGAGGTGGGGVASAFGGGNAFGGRGGDGGDGGDGGTGG  180
            LIGDGGAGGAGGIGGAGGVGGGGGAGGTGGGGVASAFGGGNAFGGRGGDGGDGGDGGTGG
Sbjct  121  LIGDGGAGGAGGIGGAGGVGGGGGAGGTGGGGVASAFGGGNAFGGRGGDGGDGGDGGTGG  180

Query  181  AGGARGAGGAGGAGGWLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKA  240
            AG A GAGGAGGAGGWLSGHSGAHGAMG GGEGGAGGGGGARGEAGAGGGTSTGTNPGKA
Sbjct  181  AGAAGGAGGAGGAGGWLSGHSGAHGAMGGGGEGGAGGGGGARGEAGAGGGTSTGTNPGKA  240

Query  241  GAPGTQGDSGDPGPPG  256
            GAPGTQGDSGDPGPPG
Sbjct  241  GAPGTQGDSGDPGPPG  256


>gi|148823337|ref|YP_001288091.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
 gi|148721864|gb|ABR06489.1| PE-PGRS family protein [Mycobacterium tuberculosis F11]
Length=362

 Score = 56.2 bits (134),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  196  WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP  255
            WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP
Sbjct  302  WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP  361

Query  256  G  256
            G
Sbjct  362  G  362


>gi|31793306|ref|NP_855799.1| hypothetical protein Mb2150c [Mycobacterium bovis AF2122/97]
 gi|289554088|ref|ZP_06443298.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|31618898|emb|CAD97003.1| conserved hypothetical protein, PE_PGRS [Mycobacterium bovis 
AF2122/97]
 gi|289438720|gb|EFD21213.1| predicted protein [Mycobacterium tuberculosis KZN 605]
 gi|328458573|gb|AEB03996.1| PE-PGRS family protein [Mycobacterium tuberculosis KZN 4207]
Length=355

 Score = 55.8 bits (133),  Expect = 5e-06, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  196  WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP  255
            WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP
Sbjct  295  WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP  354

Query  256  G  256
            G
Sbjct  355  G  355


>gi|289447746|ref|ZP_06437490.1| predicted protein [Mycobacterium tuberculosis CPHL_A]
 gi|289420704|gb|EFD17905.1| predicted protein [Mycobacterium tuberculosis CPHL_A]
Length=118

 Score = 52.8 bits (125),  Expect = 5e-05, Method: Compositional matrix adjust.
 Identities = 61/61 (100%), Positives = 61/61 (100%), Gaps = 0/61 (0%)

Query  196  WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP  255
            WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP
Sbjct  58   WLSGHSGAHGAMGSGGEGGAGGGGGARGEAGAGGGTSTGTNPGKAGAPGTQGDSGDPGPP  117

Query  256  G  256
            G
Sbjct  118  G  118



Lambda     K      H
   0.307    0.147    0.468 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 377837056800


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40