BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2142A

Length=71
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15841634|ref|NP_336671.1|  hypothetical protein MT2201 [Mycoba...   139    1e-31
gi|167967855|ref|ZP_02550132.1|  hypothetical protein MtubH3_0740...   137    4e-31


>gi|15841634|ref|NP_336671.1| hypothetical protein MT2201 [Mycobacterium tuberculosis CDC1551]
 gi|148661958|ref|YP_001283481.1| hypothetical protein MRA_2157 [Mycobacterium tuberculosis H37Ra]
 gi|253798793|ref|YP_003031794.1| toxin [Mycobacterium tuberculosis KZN 1435]
 51 more sequence titles
 Length=71

 Score =  139 bits (351),  Expect = 1e-31, Method: Compositional matrix adjust.
 Identities = 70/71 (99%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

Query  1   VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTID  60
           +VVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTID
Sbjct  1   MVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTID  60

Query  61  DFDKRIRARLG  71
           DFDKRIRARLG
Sbjct  61  DFDKRIRARLG  71


>gi|167967855|ref|ZP_02550132.1| hypothetical protein MtubH3_07406 [Mycobacterium tuberculosis 
H37Ra]
 gi|254551179|ref|ZP_05141626.1| toxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
Length=70

 Score =  137 bits (346),  Expect = 4e-31, Method: Compositional matrix adjust.
 Identities = 69/70 (99%), Positives = 70/70 (100%), Gaps = 0/70 (0%)

Query  2   VVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDD  61
           +VNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDD
Sbjct  1   MVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDD  60

Query  62  FDKRIRARLG  71
           FDKRIRARLG
Sbjct  61  FDKRIRARLG  70



Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 127819123992


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40