BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2142c Length=105 Score E Sequences producing significant alignments: (Bits) Value gi|15609279|ref|NP_216658.1| hypothetical protein Rv2142c [Mycob... 215 2e-54 gi|289758262|ref|ZP_06517640.1| conserved hypothetical protein [... 209 1e-52 gi|116625465|ref|YP_827621.1| plasmid stabilization system prote... 43.9 0.008 gi|291278801|ref|YP_003495636.1| plasmid stabilization system pr... 41.6 0.044 gi|171912033|ref|ZP_02927503.1| hypothetical protein VspiD_12675... 39.3 0.19 gi|30249560|ref|NP_841630.1| hypothetical protein NE1591 [Nitros... 39.3 0.20 gi|88602008|ref|YP_502186.1| hypothetical protein Mhun_0714 [Met... 38.5 0.32 gi|308274163|emb|CBX30762.1| hypothetical protein N47_E42740 [un... 38.1 0.41 gi|119356098|ref|YP_910742.1| hypothetical protein Cpha266_0252 ... 37.4 0.70 gi|86748591|ref|YP_485087.1| plasmid stabilization system protei... 36.6 1.2 gi|119491339|ref|ZP_01623393.1| hypothetical protein L8106_22119... 36.2 1.7 gi|189500203|ref|YP_001959673.1| hypothetical protein Cphamn1_12... 36.2 1.8 gi|308273978|emb|CBX30577.1| hypothetical protein N47_E40890 [un... 36.2 1.8 gi|206603941|gb|EDZ40421.1| Probable plasmid stabilization syste... 36.2 1.9 gi|149369502|ref|ZP_01889354.1| hypothetical protein SCB49_06742... 35.0 3.4 gi|220934278|ref|YP_002513177.1| hypothetical protein Tgr7_1104 ... 35.0 3.5 gi|86742313|ref|YP_482713.1| 3-isopropylmalate dehydrogenase [Fr... 35.0 3.5 gi|315499930|ref|YP_004088733.1| plasmid stabilization system [A... 34.7 4.5 gi|296531717|ref|ZP_06894546.1| addiction module toxin RelE [Ros... 34.7 5.0 gi|308274478|emb|CBX31077.1| hypothetical protein N47_E45890 [un... 34.7 5.5 gi|78188254|ref|YP_378592.1| hypothetical protein Cag_0273 [Chlo... 34.3 6.4 gi|39995166|ref|NP_951117.1| hypothetical protein GSU0055 [Geoba... 34.3 6.5 gi|225159085|ref|ZP_03725393.1| conserved hypothetical protein [... 34.3 7.2 gi|78188683|ref|YP_379021.1| hypothetical protein Cag_0707 [Chlo... 34.3 7.3 gi|322490744|emb|CBZ26008.1| putative clathrin heavy chain [Leis... 33.9 8.6 >gi|15609279|ref|NP_216658.1| hypothetical protein Rv2142c [Mycobacterium tuberculosis H37Rv] gi|15841633|ref|NP_336670.1| hypothetical protein MT2200 [Mycobacterium tuberculosis CDC1551] gi|31793322|ref|NP_855815.1| hypothetical protein Mb2166c [Mycobacterium bovis AF2122/97] 79 more sequence titles Length=105 Score = 215 bits (548), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 105/105 (100%), Positives = 105/105 (100%), Gaps = 0/105 (0%) Query 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYR 60 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYR Sbjct 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYR 60 Query 61 HIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAEISGRTFE 105 HIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAEISGRTFE Sbjct 61 HIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAEISGRTFE 105 >gi|289758262|ref|ZP_06517640.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289713826|gb|EFD77838.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=102 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 102/102 (100%), Positives = 102/102 (100%), Gaps = 0/102 (0%) Query 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYR 60 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYR Sbjct 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYR 60 Query 61 HIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAEISGR 102 HIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAEISGR Sbjct 61 HIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAEISGR 102 >gi|116625465|ref|YP_827621.1| plasmid stabilization system protein [Candidatus Solibacter usitatus Ellin6076] gi|116228627|gb|ABJ87336.1| plasmid stabilization system [Candidatus Solibacter usitatus Ellin6076] Length=98 Score = 43.9 bits (102), Expect = 0.008, Method: Compositional matrix adjust. Identities = 30/99 (31%), Positives = 45/99 (46%), Gaps = 15/99 (15%) Query 1 MTRRLRVHNGVEDDLFEAFSYYADAAP-------DQIDRLYNLFVDAVTKRIPQAPNAFA 53 M R +R H D EA ++YA+ + D++DRL +L D+ PN F Sbjct 1 MQRSVRFHPAALRDADEAAAWYAERSVRAAARFLDELDRLIDLISDS--------PNRFP 52 Query 54 PLFKHYRHIYLRPFRYYVAYRTTDEAIDILAVRHGMENP 92 P R R F +Y+ +R + + +LAV HG P Sbjct 53 PFDADLRRAVFRRFPFYIVFRADELNVVVLAVAHGKRRP 91 >gi|291278801|ref|YP_003495636.1| plasmid stabilization system protein [Deferribacter desulfuricans SSM1] gi|290753503|dbj|BAI79880.1| plasmid stabilization system protein [Deferribacter desulfuricans SSM1] Length=103 Score = 41.6 bits (96), Expect = 0.044, Method: Compositional matrix adjust. Identities = 28/95 (30%), Positives = 45/95 (48%), Gaps = 1/95 (1%) Query 4 RLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIY 63 ++ H + +L EA +YY + DQ+ + + T+RI P A++ L + R Sbjct 2 KVSFHPEAKKELLEAINYY-NEFNDQLGLEFVKEFYSATERIKLFPGAWSKLSNNTRRCL 60 Query 64 LRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAE 98 L F Y + Y DE I ILAV + P +E + Sbjct 61 LNRFPYGIIYTVKDEQIIILAVMQLNKKPKLLEKQ 95 >gi|171912033|ref|ZP_02927503.1| hypothetical protein VspiD_12675 [Verrucomicrobium spinosum DSM 4136] Length=96 Score = 39.3 bits (90), Expect = 0.19, Method: Compositional matrix adjust. Identities = 28/95 (30%), Positives = 45/95 (48%), Gaps = 1/95 (1%) Query 4 RLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIY 63 +LRV + D+FEA S+Y D N + A ++I P A+ + K R Sbjct 2 QLRVDSRASRDVFEAASFYEREVSGLGDDFLNE-IQAAYQQIVTHPTAWREMAKGVRRFL 60 Query 64 LRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEAE 98 + F Y V Y+ ++ I + AV H +P+A + E Sbjct 61 VNRFPYGVYYKLGEDTILVFAVLHLYRHPDAWKKE 95 >gi|30249560|ref|NP_841630.1| hypothetical protein NE1591 [Nitrosomonas europaea ATCC 19718] gi|30138923|emb|CAD85502.1| conserved hypothetical protein [Nitrosomonas europaea ATCC 19718] Length=98 Score = 39.3 bits (90), Expect = 0.20, Method: Compositional matrix adjust. Identities = 27/96 (29%), Positives = 47/96 (49%), Gaps = 7/96 (7%) Query 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVT---KRIPQAPNAFAPLFK 57 MT +R+ E DL +A ++Y + Q L + F+D VT I + P A+ + + Sbjct 1 MTCEVRLRPEAEQDLADAAAWYEE----QRQGLGHKFLDEVTTTLSNIAETPLAYPNVHR 56 Query 58 HYRHIYLRPFRYYVAYRTTDEAIDILAVRHGMENPN 93 R +R F + + ++ I ++AV HG NP+ Sbjct 57 GTRRAVIRRFPFGIYFQVKKATIIVVAVMHGSRNPH 92 >gi|88602008|ref|YP_502186.1| hypothetical protein Mhun_0714 [Methanospirillum hungatei JF-1] gi|88187470|gb|ABD40467.1| conserved hypothetical protein [Methanospirillum hungatei JF-1] Length=99 Score = 38.5 bits (88), Expect = 0.32, Method: Compositional matrix adjust. Identities = 30/88 (35%), Positives = 39/88 (45%), Gaps = 3/88 (3%) Query 8 HNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPF 67 H E +L +A SYY P + A+T RI Q P ++A H R L F Sbjct 6 HPEAEQELLQAVSYYEKCRPGLGIEFSHEVYLAIT-RILQFPESYAQFSTHSRRCILNRF 64 Query 68 RYYVAYR--TTDEAIDILAVRHGMENPN 93 Y + Y TD +I ILAV + PN Sbjct 65 PYGILYSPGKTDGSIIILAVMNLHRKPN 92 >gi|308274163|emb|CBX30762.1| hypothetical protein N47_E42740 [uncultured Desulfobacterium sp.] Length=98 Score = 38.1 bits (87), Expect = 0.41, Method: Compositional matrix adjust. Identities = 26/96 (28%), Positives = 49/96 (52%), Gaps = 7/96 (7%) Query 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVD---AVTKRIPQAPNAFAPLFK 57 M+ R+ + E D+ EA ++Y Q L + F+D +V + I P+ +A + + Sbjct 1 MSYRVHLRPDAETDIEEAATWYEK----QRKGLGDEFLDEVLSVFETISDNPHMYAVVHR 56 Query 58 HYRHIYLRPFRYYVAYRTTDEAIDILAVRHGMENPN 93 H R + F + + YR +E++ ++AV HG +P Sbjct 57 HTRRAIIHRFPFGIYYRIEEESLVVVAVMHGSRHPK 92 >gi|119356098|ref|YP_910742.1| hypothetical protein Cpha266_0252 [Chlorobium phaeobacteroides DSM 266] gi|119353447|gb|ABL64318.1| conserved hypothetical protein [Chlorobium phaeobacteroides DSM 266] Length=96 Score = 37.4 bits (85), Expect = 0.70, Method: Compositional matrix adjust. Identities = 28/86 (33%), Positives = 42/86 (49%), Gaps = 1/86 (1%) Query 8 HNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPF 67 H +++ +A YY + AP + + L V + KR + PNA+A L++ R +R F Sbjct 6 HPEAKEEFDKAIEYYENIAPG-LGYDFALEVHSAIKRSIEHPNAWAVLYEDVRRSLVRRF 64 Query 68 RYYVAYRTTDEAIDILAVRHGMENPN 93 Y V Y I ILAV + NP Sbjct 65 PYGVLYSKEPAEIFILAVMNLHRNPG 90 >gi|86748591|ref|YP_485087.1| plasmid stabilization system protein [Rhodopseudomonas palustris HaA2] gi|86571619|gb|ABD06176.1| Plasmid stabilization system [Rhodopseudomonas palustris HaA2] Length=92 Score = 36.6 bits (83), Expect = 1.2, Method: Compositional matrix adjust. Identities = 23/79 (30%), Positives = 35/79 (45%), Gaps = 1/79 (1%) Query 14 DLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAY 73 +L E SY D +P + + AV + Q P A P + R + P+ Y + Y Sbjct 12 ELDEILSYIDDRSPQGALHVKK-RIHAVIGLLLQHPGAGRPTVRGMRRVVAYPYPYLIFY 70 Query 74 RTTDEAIDILAVRHGMENP 92 R T++ I I +RH P Sbjct 71 RATEQEIVIHGIRHSARKP 89 >gi|119491339|ref|ZP_01623393.1| hypothetical protein L8106_22119 [Lyngbya sp. PCC 8106] gi|119453503|gb|EAW34665.1| hypothetical protein L8106_22119 [Lyngbya sp. PCC 8106] Length=98 Score = 36.2 bits (82), Expect = 1.7, Method: Compositional matrix adjust. Identities = 23/86 (27%), Positives = 44/86 (52%), Gaps = 1/86 (1%) Query 11 VEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYY 70 V D++ EA+S+Y + D+ N +D + RI P ++ +++ R +R F Y Sbjct 11 VRDEINEAYSWYENQQMGLGDQFLNC-IDEILNRICLMPESYPVVYRDVRRAVVRRFPYA 69 Query 71 VAYRTTDEAIDILAVRHGMENPNAVE 96 + YR + ++AV HG +P + + Sbjct 70 IYYRIISSRVIVIAVFHGRRDPKSWQ 95 >gi|189500203|ref|YP_001959673.1| hypothetical protein Cphamn1_1260 [Chlorobium phaeobacteroides BS1] gi|189495644|gb|ACE04192.1| conserved hypothetical protein [Chlorobium phaeobacteroides BS1] Length=98 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 21/89 (24%), Positives = 40/89 (45%), Gaps = 1/89 (1%) Query 4 RLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIY 63 ++R+H +L EA +Y + + + + V A ++I + PN F +Y Sbjct 2 KIRIHEAAARELDEAIKWY-ELQSQGLGKRFKTSVAAQIRKIRKNPNWFLIESGEIYKVY 60 Query 64 LRPFRYYVAYRTTDEAIDILAVRHGMENP 92 + F Y + Y + ++I I A+ H P Sbjct 61 IPKFPYKIIYTSGKDSIVIWAIAHMHRKP 89 >gi|308273978|emb|CBX30577.1| hypothetical protein N47_E40890 [uncultured Desulfobacterium sp.] Length=101 Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/63 (32%), Positives = 30/63 (48%), Gaps = 0/63 (0%) Query 38 VDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAIDILAVRHGMENPNAVEA 97 V +RI Q P A++PL K R F Y V Y+ E I ++A+ H +P E+ Sbjct 35 VKRTLERIVQYPEAWSPLSKRTRRCRTNRFPYGVIYQIRGEIILVVAIMHLSRDPRMWES 94 Query 98 EIS 100 + Sbjct 95 RLK 97 >gi|206603941|gb|EDZ40421.1| Probable plasmid stabilization system protein [Leptospirillum sp. Group II '5-way CG'] Length=100 Score = 36.2 bits (82), Expect = 1.9, Method: Compositional matrix adjust. Identities = 26/89 (30%), Positives = 42/89 (48%), Gaps = 1/89 (1%) Query 5 LRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYL 64 +R+ +L +A ++Y D AP D ++ + V V I + P A+ PL K R + Sbjct 2 IRLLEPAAQELDQAIAWYNDQAPGLGD-VFLIEVIKVFGLIERNPKAWHPLSKSTRRYRM 60 Query 65 RPFRYYVAYRTTDEAIDILAVRHGMENPN 93 F Y + Y T + ++AV H PN Sbjct 61 ARFPYGIIYTTDRNDLLVIAVAHLHRQPN 89 >gi|149369502|ref|ZP_01889354.1| hypothetical protein SCB49_06742 [unidentified eubacterium SCB49] gi|149356929|gb|EDM45484.1| hypothetical protein SCB49_06742 [unidentified eubacterium SCB49] Length=83 Score = 35.0 bits (79), Expect = 3.4, Method: Compositional matrix adjust. Identities = 17/56 (31%), Positives = 27/56 (49%), Gaps = 0/56 (0%) Query 38 VDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAIDILAVRHGMENPN 93 ++ I + P AF + R +YL+ F Y V Y+ I I+A+ H NP+ Sbjct 23 LEVCILHISKNPEAFQKRIEDARIVYLKSFSYGVFYKIYSSEIRIIAILHTSRNPD 78 >gi|220934278|ref|YP_002513177.1| hypothetical protein Tgr7_1104 [Thioalkalivibrio sulfidophilus HL-EbGr7] gi|219995588|gb|ACL72190.1| conserved hypothetical protein [Thioalkalivibrio sulfidophilus HL-EbGr7] Length=96 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 29/90 (33%), Positives = 40/90 (45%), Gaps = 5/90 (5%) Query 6 RVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDA--VTKRIPQAPNAFAPLFKHYRHIY 63 R H E +L EA SYY D P Y+L V+ +R P A+ L R + Sbjct 4 RFHPEAEHELREAISYYEDIEPGLG---YDLSVEVYYAIQRAVAHPQAWPVLDSDIRRVL 60 Query 64 LRPFRYYVAYRTTDEAIDILAVRHGMENPN 93 +R F Y V Y +A+ +LAV + P Sbjct 61 VRRFPYGVLYSEEQDALLVLAVMNLHREPG 90 >gi|86742313|ref|YP_482713.1| 3-isopropylmalate dehydrogenase [Frankia sp. CcI3] gi|115311746|sp|Q2J6V8.1|LEU3_FRASC RecName: Full=3-isopropylmalate dehydrogenase; AltName: Full=3-IPM-DH; AltName: Full=Beta-IPM dehydrogenase; Short=IMDH gi|86569175|gb|ABD12984.1| 3-isopropylmalate dehydrogenase [Frankia sp. CcI3] Length=342 Score = 35.0 bits (79), Expect = 3.5, Method: Compositional matrix adjust. Identities = 18/42 (43%), Positives = 23/42 (55%), Gaps = 3/42 (7%) Query 56 FKHYRHIYLRPFRYYVAYRT---TDEAIDILAVRHGMENPNA 94 F+ H+ LRP R Y R+ D AID++ VR G E P A Sbjct 88 FEFDHHVNLRPVRLYPGVRSPLAGDPAIDMIVVREGTEGPYA 129 >gi|315499930|ref|YP_004088733.1| plasmid stabilization system [Asticcacaulis excentricus CB 48] gi|315417942|gb|ADU14582.1| plasmid stabilization system [Asticcacaulis excentricus CB 48] Length=99 Score = 34.7 bits (78), Expect = 4.5, Method: Compositional matrix adjust. Identities = 25/81 (31%), Positives = 39/81 (49%), Gaps = 1/81 (1%) Query 14 DLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAY 73 ++ EA +YA P ++ R +N V V I ++P A + R L F Y++ Y Sbjct 15 EVIEASRWYASKNP-RLGRRFNQQVTDVLADICRSPFRNAEVQSGLRRARLADFPYHLYY 73 Query 74 RTTDEAIDILAVRHGMENPNA 94 R D + + AV H NP+A Sbjct 74 RLEDRTLYVAAVLHTRRNPSA 94 >gi|296531717|ref|ZP_06894546.1| addiction module toxin RelE [Roseomonas cervicalis ATCC 49957] gi|296267949|gb|EFH13747.1| addiction module toxin RelE [Roseomonas cervicalis ATCC 49957] Length=103 Score = 34.7 bits (78), Expect = 5.0, Method: Compositional matrix adjust. Identities = 23/77 (30%), Positives = 34/77 (45%), Gaps = 4/77 (5%) Query 14 DLFEAFSYYADAAPDQIDRLYNLFVD--AVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYV 71 DL E ++ A+ PD DRL + + K P A A L R + P Y + Sbjct 11 DLIEIWTRLAEQNPDAADRLLDRIAARLEILKDFPHAGTALPALAPEARMLVEAP--YLI 68 Query 72 AYRTTDEAIDILAVRHG 88 YR +E + ++ V HG Sbjct 69 LYRADEEGVLLVRVLHG 85 >gi|308274478|emb|CBX31077.1| hypothetical protein N47_E45890 [uncultured Desulfobacterium sp.] Length=99 Score = 34.7 bits (78), Expect = 5.5, Method: Compositional matrix adjust. Identities = 28/93 (31%), Positives = 40/93 (44%), Gaps = 2/93 (2%) Query 1 MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHY- 59 M + L V E DL EA+ +Y + + L VDAV I + P F + K Sbjct 1 MKKPLIVRPEAEVDLAEAYQWYEQQV-HGLGAQFLLCVDAVMASIERNPQLFPVVHKAVI 59 Query 60 RHIYLRPFRYYVAYRTTDEAIDILAVRHGMENP 92 R R F Y V + + +I ++ V H NP Sbjct 60 RRALTRRFPYGVFFVEGERSISVIRVAHAKRNP 92 >gi|78188254|ref|YP_378592.1| hypothetical protein Cag_0273 [Chlorobium chlorochromatii CaD3] gi|78170453|gb|ABB27549.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length=99 Score = 34.3 bits (77), Expect = 6.4, Method: Compositional matrix adjust. Identities = 25/83 (31%), Positives = 39/83 (47%), Gaps = 5/83 (6%) Query 13 DDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKH--YRHIYLRPFRYY 70 ++L +A +YY + P ++ + VD I P P +H YR + L+ F YY Sbjct 11 NELNDAIAYYEEQQPGLGVKMKD-EVDQHVHWILNHP--LIPRLRHGGYRRVNLKVFPYY 67 Query 71 VAYRTTDEAIDILAVRHGMENPN 93 +AY E + ILA+ H P Sbjct 68 IAYLVHQETLWILAIAHTHRKPK 90 >gi|39995166|ref|NP_951117.1| hypothetical protein GSU0055 [Geobacter sulfurreducens PCA] gi|39981928|gb|AAR33390.1| conserved hypothetical protein [Geobacter sulfurreducens PCA] Length=98 Score = 34.3 bits (77), Expect = 6.5, Method: Compositional matrix adjust. Identities = 23/81 (29%), Positives = 37/81 (46%), Gaps = 1/81 (1%) Query 12 EDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYV 71 E +L +AF +Y D + + L VDA I + P F + + R +R F Y + Sbjct 11 ESELADAFDWYEDRV-SGLGSDFLLNVDAAFHSILRNPRQFPVVHNNLRRTLIRRFPYQI 69 Query 72 AYRTTDEAIDILAVRHGMENP 92 + + + +LAV H NP Sbjct 70 FFLLEETRVVVLAVFHAKRNP 90 >gi|225159085|ref|ZP_03725393.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] gi|224802343|gb|EEG20607.1| conserved hypothetical protein [Opitutaceae bacterium TAV2] Length=95 Score = 34.3 bits (77), Expect = 7.2, Method: Compositional matrix adjust. Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 0/50 (0%) Query 43 KRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAIDILAVRHGMENP 92 ++I Q P + + R YL+ F+Y+V Y +E+I IL VRH + P Sbjct 39 QQIRQFPESCPEIAPAIRLGYLKRFKYHVTYTQREESIRILYVRHAKQVP 88 >gi|78188683|ref|YP_379021.1| hypothetical protein Cag_0707 [Chlorobium chlorochromatii CaD3] gi|78170882|gb|ABB27978.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3] Length=97 Score = 34.3 bits (77), Expect = 7.3, Method: Compositional matrix adjust. Identities = 22/88 (25%), Positives = 37/88 (43%), Gaps = 2/88 (2%) Query 8 HNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPF 67 H +ED+L + YY +++ N F V K I P + + R +R F Sbjct 6 HPAIEDELRQIIKYYKESSAGLGTEFLNEFERQVLK-IADNPRRWVAVKGTIRRSLMRRF 64 Query 68 RYYVAYR-TTDEAIDILAVRHGMENPNA 94 Y + +R DE + + V+H +P Sbjct 65 PYVIYFRLVNDETLRVTVVKHQRRHPKK 92 >gi|322490744|emb|CBZ26008.1| putative clathrin heavy chain [Leishmania mexicana MHOM/GT/2001/U1103] Length=1693 Score = 33.9 bits (76), Expect = 8.6, Method: Composition-based stats. Identities = 26/99 (27%), Positives = 43/99 (44%), Gaps = 10/99 (10%) Query 8 HNGVEDDLFEAFSYYADAAPDQI-DRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRP 66 H G D L+ A +Y P+Q+ D L+++F +R+ AP+ H YL Sbjct 1414 HLGASDLLYTAIGFYLKTHPEQLNDFLFSIFKRVDPERVMAETKKVAPI--HVIRTYLEA 1471 Query 67 FRYYVAYRTTD-------EAIDILAVRHGMENPNAVEAE 98 + A + + E D A+RH +E N ++E Sbjct 1472 AQERNAKKVNETLNNLYIEEEDFKALRHSVETYNNFDSE 1510 Lambda K H 0.326 0.140 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131458853568 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40