BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2144c Length=118 Score E Sequences producing significant alignments: (Bits) Value gi|15609281|ref|NP_216660.1| transmembrane protein [Mycobacteriu... 222 2e-56 gi|340627152|ref|YP_004745604.1| putative transmembrane protein ... 221 4e-56 gi|336461971|gb|EGO40822.1| hypothetical protein MAPs_25420 [Myc... 120 6e-26 gi|118618786|ref|YP_907118.1| hypothetical protein MUL_3492 [Myc... 108 2e-22 gi|118465304|ref|YP_881550.1| hypothetical protein MAV_2346 [Myc... 108 2e-22 gi|296166011|ref|ZP_06848463.1| conserved hypothetical protein [... 108 4e-22 gi|183983174|ref|YP_001851465.1| hypothetical protein MMAR_3184 ... 107 5e-22 gi|41407986|ref|NP_960822.1| hypothetical protein MAP1888c [Myco... 107 5e-22 gi|342859860|ref|ZP_08716513.1| hypothetical protein MCOL_13313 ... 104 4e-21 gi|240168208|ref|ZP_04746867.1| hypothetical protein MkanA1_0277... 101 3e-20 gi|254821413|ref|ZP_05226414.1| hypothetical protein MintA_15859... 100 5e-20 gi|118470892|ref|YP_888493.1| hypothetical protein MSMEG_4216 [M... 96.7 1e-18 gi|120404486|ref|YP_954315.1| hypothetical protein Mvan_3514 [My... 95.5 2e-18 gi|15827443|ref|NP_301706.1| hypothetical protein ML0923 [Mycoba... 92.0 2e-17 gi|108800213|ref|YP_640410.1| hypothetical protein Mmcs_3247 [My... 91.3 4e-17 gi|315443931|ref|YP_004076810.1| hypothetical protein Mspyr1_233... 90.9 6e-17 gi|145223584|ref|YP_001134262.1| hypothetical protein Mflv_2997 ... 89.7 1e-16 gi|333990392|ref|YP_004523006.1| transmembrane protein [Mycobact... 85.9 2e-15 gi|169629105|ref|YP_001702754.1| hypothetical protein MAB_2018 [... 73.9 7e-12 gi|326382568|ref|ZP_08204259.1| hypothetical protein SCNU_06500 ... 51.2 5e-05 gi|289758265|ref|ZP_06517643.1| predicted protein [Mycobacterium... 50.4 9e-05 gi|333919036|ref|YP_004492617.1| hypothetical protein AS9A_1365 ... 47.0 0.001 gi|229490452|ref|ZP_04384293.1| conserved hypothetical protein [... 45.8 0.002 gi|312140133|ref|YP_004007469.1| integral membrane protein [Rhod... 45.1 0.003 gi|325674385|ref|ZP_08154073.1| hypothetical protein HMPREF0724_... 45.1 0.004 gi|226307030|ref|YP_002766990.1| hypothetical protein RER_35430 ... 44.3 0.006 gi|227504702|ref|ZP_03934751.1| hypothetical protein HMPREF0308_... 42.4 0.025 gi|337291111|ref|YP_004630132.1| hypothetical protein CULC22_015... 40.0 0.11 gi|343924219|ref|ZP_08763782.1| hypothetical protein GOALK_002_0... 40.0 0.12 gi|68535834|ref|YP_250539.1| hypothetical protein jk0759 [Coryne... 40.0 0.12 gi|319949241|ref|ZP_08023324.1| hypothetical protein ES5_07479 [... 40.0 0.13 gi|111018092|ref|YP_701064.1| hypothetical protein RHA1_ro01079 ... 38.5 0.33 gi|262202901|ref|YP_003274109.1| hypothetical protein Gbro_3008 ... 37.7 0.53 gi|54023743|ref|YP_117985.1| hypothetical protein nfa17750 [Noca... 35.8 2.1 gi|302206511|gb|ADL10853.1| Hypothetical protein CpC231_1382 [Co... 35.8 2.4 gi|300858806|ref|YP_003783789.1| hypothetical protein cpfrc_0138... 35.8 2.4 gi|25028600|ref|NP_738654.1| hypothetical protein CE2044 [Coryne... 35.4 2.6 gi|336325357|ref|YP_004605323.1| hypothetical protein CRES_0803 ... 34.7 4.3 >gi|15609281|ref|NP_216660.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15841636|ref|NP_336673.1| hypothetical protein MT2203 [Mycobacterium tuberculosis CDC1551] gi|31793324|ref|NP_855817.1| transmembrane protein [Mycobacterium bovis AF2122/97] 76 more sequence titles Length=118 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 118/118 (100%), Positives = 118/118 (100%), Gaps = 0/118 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG Sbjct 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 Query 61 AGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK 118 AGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK Sbjct 61 AGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK 118 >gi|340627152|ref|YP_004745604.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059] gi|340005342|emb|CCC44500.1| putative transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=118 Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 117/118 (99%), Positives = 118/118 (100%), Gaps = 0/118 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG Sbjct 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 Query 61 AGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK 118 AGETGVAEEADVDYPEEAPEESQAVDAGVIGS+EPSEEASEATEESAVSADRSDDSAK Sbjct 61 AGETGVAEEADVDYPEEAPEESQAVDAGVIGSDEPSEEASEATEESAVSADRSDDSAK 118 >gi|336461971|gb|EGO40822.1| hypothetical protein MAPs_25420 [Mycobacterium avium subsp. paratuberculosis S397] Length=126 Score = 120 bits (301), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 77/126 (62%), Positives = 91/126 (73%), Gaps = 9/126 (7%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ---GGADE 57 MLIIALVLALIGL+ALVFAVVTSN+LVAWVCI ASV+GV LLI+DALRERQQ GG + Sbjct 1 MLIIALVLALIGLVALVFAVVTSNELVAWVCIAASVVGVVLLILDALRERQQRDLGGDEA 60 Query 58 ADGAGETGVAEEADVDYPEEAPEESQAVDAGVIGS---EEPSEEASEA--TEESAVSADR 112 + A E G E+ VDYPE+AP +S A DA S EPS+++ +A +EESAV AD Sbjct 61 HEDADEAGADEDDFVDYPEDAPTQSSA-DADATESTEATEPSDQSGQAGPSEESAVPADG 119 Query 113 SDDSAK 118 D A Sbjct 120 RGDEAT 125 >gi|118618786|ref|YP_907118.1| hypothetical protein MUL_3492 [Mycobacterium ulcerans Agy99] gi|118570896|gb|ABL05647.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=134 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 78/134 (59%), Positives = 88/134 (66%), Gaps = 16/134 (11%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGA----- 55 MLIIALVLALIGL+ALVFAVVTSNQLVAWVCIGAS LGV LLIVDALRERQQ A Sbjct 1 MLIIALVLALIGLVALVFAVVTSNQLVAWVCIGASALGVVLLIVDALRERQQREAASKDQ 60 Query 56 DE----ADGAGETGVAEEADVD-YPEEAPEESQAVDAGVIGSE-----EPSEEASEATEE 105 DE AD GE E D D E A E+ + V+ G +E E ++ S+ EE Sbjct 61 DEAEQPADADGEADYVEYPDDDAEAEPAAEDVEDVEEGSEDTEGQEDAESTDAGSDTAEE 120 Query 106 SAVSAD-RSDDSAK 118 S VSAD + DDSA+ Sbjct 121 STVSADAKRDDSAE 134 >gi|118465304|ref|YP_881550.1| hypothetical protein MAV_2346 [Mycobacterium avium 104] gi|254775019|ref|ZP_05216535.1| hypothetical protein MaviaA2_10144 [Mycobacterium avium subsp. avium ATCC 25291] gi|118166591|gb|ABK67488.1| conserved hypothetical protein [Mycobacterium avium 104] Length=131 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/131 (58%), Positives = 90/131 (69%), Gaps = 13/131 (9%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ---GGADE 57 MLIIALVLALIGL+ALVFAVVTSN+LVAWVCI ASV+GV LLI+DALRERQQ GG + Sbjct 1 MLIIALVLALIGLVALVFAVVTSNELVAWVCIAASVVGVVLLILDALRERQQRDLGGDEA 60 Query 58 ADGAGETGVAEEAD----VDYPEEAPEESQAVDAGVIGSEEPSEEASEA-----TEESAV 108 + A E AD VDYPE+AP ES A + EPS+++ ++ +EESAV Sbjct 61 HEDADEDADEAGADEDDFVDYPEDAPTESTADATESTEATEPSDQSDQSGQAGRSEESAV 120 Query 109 SAD-RSDDSAK 118 AD R D+S Sbjct 121 PADGRGDESTH 131 >gi|296166011|ref|ZP_06848463.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898632|gb|EFG78186.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=110 Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/121 (59%), Positives = 84/121 (70%), Gaps = 14/121 (11%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ--GGADEA 58 MLIIALVLAL+GL+ALVFAVVTSN+LVAWVCIGASVLGV LLIVDAL+ERQ+ G E Sbjct 1 MLIIALVLALVGLVALVFAVVTSNELVAWVCIGASVLGVVLLIVDALQERQRRDAGGAEP 60 Query 59 DGAGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSAD-RSDDSA 117 + E EE VDYPEEAP E ++GV S E ++ AV A+ R D++A Sbjct 61 EHVDEVPEGEET-VDYPEEAPHEG-VHESGVYESSE---------DQPAVPAEGRGDEAA 109 Query 118 K 118 K Sbjct 110 K 110 >gi|183983174|ref|YP_001851465.1| hypothetical protein MMAR_3184 [Mycobacterium marinum M] gi|183176500|gb|ACC41610.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=133 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 76/133 (58%), Positives = 91/133 (69%), Gaps = 15/133 (11%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ--GGADEA 58 MLIIALVLALIGL+ALVFAVVTSNQLVAWVCIGAS LGV LLIVDALRERQQ + + Sbjct 1 MLIIALVLALIGLVALVFAVVTSNQLVAWVCIGASALGVVLLIVDALRERQQREAASKDQ 60 Query 59 DGAGETGVAE-EAD-VDYP------EEAPEESQAVDAGVIGSEEPS----EEASEATEES 106 D A + A+ EAD V+YP E A E+ + + G +E P +E ++ EES Sbjct 61 DEAEQPADADGEADYVEYPDDDAEAEPAAEDVEDAEEGSEDTEGPEDTEGQEDADTAEES 120 Query 107 AVSAD-RSDDSAK 118 VSAD + DDSA+ Sbjct 121 TVSADAKRDDSAE 133 >gi|41407986|ref|NP_960822.1| hypothetical protein MAP1888c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396340|gb|AAS04205.1| hypothetical protein MAP_1888c [Mycobacterium avium subsp. paratuberculosis K-10] Length=131 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 77/130 (60%), Positives = 90/130 (70%), Gaps = 13/130 (10%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ---GGADE 57 MLIIALVLALIGL+ALVFAVVTSN+LVAWVCI ASV+GV LLI+DALRERQQ GG + Sbjct 2 MLIIALVLALIGLVALVFAVVTSNELVAWVCIAASVVGVVLLILDALRERQQRDLGGDEA 61 Query 58 ADGAGETGVAEEAD----VDYPEEAPEESQAVDAGVIGS---EEPSEEASEA--TEESAV 108 + A E AD VDYPE+AP +S A DA S EPS+++ +A +EESAV Sbjct 62 HEDADEDADEAGADEDDFVDYPEDAPTQSSA-DADATESTEATEPSDQSGQAGPSEESAV 120 Query 109 SADRSDDSAK 118 AD D A Sbjct 121 PADGRGDEAT 130 >gi|342859860|ref|ZP_08716513.1| hypothetical protein MCOL_13313 [Mycobacterium colombiense CECT 3035] gi|342132992|gb|EGT86212.1| hypothetical protein MCOL_13313 [Mycobacterium colombiense CECT 3035] Length=116 Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 70/126 (56%), Positives = 80/126 (64%), Gaps = 18/126 (14%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQG--GADEA 58 MLIIALVLALIGL+ALVFAVVTSN+LVAWVCI ASV+GV LLI+DALRERQ+ G DEA Sbjct 1 MLIIALVLALIGLVALVFAVVTSNELVAWVCIAASVVGVVLLILDALRERQRRDLGGDEA 60 Query 59 DG-----AGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSAD-R 112 AGE E VDYPEE +E + G + TEES V A+ R Sbjct 61 TDAEEHEAGEAQAGEGDYVDYPEEVTDEGEPATTG----------ETAPTEESKVVAEGR 110 Query 113 SDDSAK 118 D+ K Sbjct 111 GDEPGK 116 >gi|240168208|ref|ZP_04746867.1| hypothetical protein MkanA1_02777 [Mycobacterium kansasii ATCC 12478] Length=113 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 81/128 (64%), Positives = 90/128 (71%), Gaps = 25/128 (19%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ---GGADE 57 MLIIALVLALIGL+ALVFAVVTSN LVAWVCIGASVLGV LLIVDA+RERQQ GG D+ Sbjct 1 MLIIALVLALIGLVALVFAVVTSNVLVAWVCIGASVLGVILLIVDAIRERQQRDAGGQDQ 60 Query 58 ADGAGETGVAEEADVDYPEEAPEESQAVD-----AGVIGS-EEPSEEASEATEESAVSAD 111 A EAD E PE+ QAVD AGV S ++ EA+E +EESAVSAD Sbjct 61 A----------EAD-----EEPEDQQAVDYPDDEAGVDESFDDAEPEATEESEESAVSAD 105 Query 112 R-SDDSAK 118 R DDS + Sbjct 106 RGGDDSTR 113 >gi|254821413|ref|ZP_05226414.1| hypothetical protein MintA_15859 [Mycobacterium intracellulare ATCC 13950] Length=112 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 69/121 (58%), Positives = 84/121 (70%), Gaps = 12/121 (9%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ---GGADE 57 ML+IALVLALIGL+ALVFAV+TSN+LVAW+CI ASV+GV LLI+DALRERQ GGA++ Sbjct 1 MLVIALVLALIGLVALVFAVITSNELVAWLCIAASVVGVVLLILDALRERQHREPGGAED 60 Query 58 ADGAGETGVAEEADVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSA 117 D AGE E+ VDYPEEA ++ V EP+ E+S A E R D+SA Sbjct 61 QD-AGEARPDEDDYVDYPEEA--SAEGEAEAVTDGPEPTGESSVAAE------GRGDESA 111 Query 118 K 118 K Sbjct 112 K 112 >gi|118470892|ref|YP_888493.1| hypothetical protein MSMEG_4216 [Mycobacterium smegmatis str. MC2 155] gi|118172179|gb|ABK73075.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=169 Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/82 (70%), Positives = 62/82 (76%), Gaps = 2/82 (2%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLIIALVLA+IGL ALV AVVTSN+L+AWVCIGASVLGV LLIVDALRER +G A G Sbjct 1 MLIIALVLAVIGLAALVTAVVTSNELIAWVCIGASVLGVVLLIVDALRERSRGARTSARG 60 Query 61 AGETGVAEEADVDY-PEEAPEE 81 +G EADVD EE EE Sbjct 61 SGAAADG-EADVDQAAEEVDEE 81 >gi|120404486|ref|YP_954315.1| hypothetical protein Mvan_3514 [Mycobacterium vanbaalenii PYR-1] gi|119957304|gb|ABM14309.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=118 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 52/82 (64%), Positives = 63/82 (77%), Gaps = 4/82 (4%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLI+ALVLA+IGL ALV AVVTSN+L+AWVCI ASV+GV LLIVDALR+R + ADE Sbjct 1 MLIVALVLAVIGLAALVMAVVTSNELIAWVCIVASVIGVVLLIVDALRDRSKRNADENPS 60 Query 61 AG---ETGVAEEADVDYPEEAP 79 A + V+E + DYP+EAP Sbjct 61 AATEPDEAVSEYVE-DYPDEAP 81 >gi|15827443|ref|NP_301706.1| hypothetical protein ML0923 [Mycobacterium leprae TN] gi|221229920|ref|YP_002503336.1| hypothetical protein MLBr_00923 [Mycobacterium leprae Br4923] gi|13092993|emb|CAC31304.1| possible membrane protein [Mycobacterium leprae] gi|219933027|emb|CAR71018.1| possible membrane protein [Mycobacterium leprae Br4923] Length=130 Score = 92.0 bits (227), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 65/129 (51%), Positives = 78/129 (61%), Gaps = 17/129 (13%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ----QGGAD 56 MLIIALVLALIGL+ LVFAV TSN L+AWVCIGASVLGV LLIVDA+RE Q D Sbjct 1 MLIIALVLALIGLVVLVFAVATSNLLMAWVCIGASVLGVLLLIVDAVREHQCIDAANNED 60 Query 57 EADGAGETGVAEEADVDYPEEAP--EESQAVDAGVIGSEEPSEEAS--------EATEES 106 + D + G VDY +E P ++A DAG + S E S + E+S Sbjct 61 KEDTDQDDGAVY---VDYLDEVPAGTSTEAPDAGSQEGDTNSGELSGYWGRLTIDTGEQS 117 Query 107 AVSADRSDD 115 AV+AD D+ Sbjct 118 AVAADDHDN 126 >gi|108800213|ref|YP_640410.1| hypothetical protein Mmcs_3247 [Mycobacterium sp. MCS] gi|119869341|ref|YP_939293.1| hypothetical protein Mkms_3309 [Mycobacterium sp. KMS] gi|126435836|ref|YP_001071527.1| hypothetical protein Mjls_3258 [Mycobacterium sp. JLS] gi|108770632|gb|ABG09354.1| putative transmembrane protein [Mycobacterium sp. MCS] gi|119695430|gb|ABL92503.1| putative transmembrane protein [Mycobacterium sp. KMS] gi|126235636|gb|ABN99036.1| putative transmembrane protein [Mycobacterium sp. JLS] Length=135 Score = 91.3 bits (225), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 57/112 (51%), Positives = 69/112 (62%), Gaps = 8/112 (7%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLIIALVLA+IGL ALV AVVT N ++AWVCI AS +GV LLIVDA+RER + A A Sbjct 1 MLIIALVLAVIGLAALVTAVVTGNAVIAWVCIAASAVGVILLIVDAVRERSRTPA--AKT 58 Query 61 AGETGVAEEA-----DVDYPEEAPEESQAVDAGVIGSEEPSEEASEATEESA 107 AG TG A+ A D DYP+E P + +A D P + T+ A Sbjct 59 AGATGTADHAPDDEFDADYPDE-PGDYEADDTQAAAERNPDVDNHTGTDSDA 109 >gi|315443931|ref|YP_004076810.1| hypothetical protein Mspyr1_23300 [Mycobacterium sp. Spyr1] gi|315262234|gb|ADT98975.1| hypothetical protein Mspyr1_23300 [Mycobacterium sp. Spyr1] Length=126 Score = 90.9 bits (224), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 50/84 (60%), Positives = 63/84 (75%), Gaps = 5/84 (5%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLI+ALVLA+IGL ALV AVVTSN+++AWVCI AS++GV LLIVDA+R+R A E+D Sbjct 1 MLIVALVLAVIGLGALVLAVVTSNEMIAWVCIAASLVGVILLIVDAIRDRSNRNAGESDS 60 Query 61 ----AGETGVAEEADV-DYPEEAP 79 +GE +E D DYP+EAP Sbjct 61 GTTDSGEDSGEDEIDYEDYPDEAP 84 >gi|145223584|ref|YP_001134262.1| hypothetical protein Mflv_2997 [Mycobacterium gilvum PYR-GCK] gi|145216070|gb|ABP45474.1| hypothetical protein Mflv_2997 [Mycobacterium gilvum PYR-GCK] Length=131 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 50/89 (57%), Positives = 63/89 (71%), Gaps = 10/89 (11%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLI+ALVLA+IGL ALV AVVTSN+++AWVCI AS++GV LLIVDA+R+R A E+D Sbjct 1 MLIVALVLAVIGLAALVLAVVTSNEMIAWVCIAASLVGVILLIVDAIRDRSNRNAGESDS 60 Query 61 ---------AGETGVAEEADV-DYPEEAP 79 +GE +E D DYP+EAP Sbjct 61 GTTVSGTTDSGEDSGEDEIDYEDYPDEAP 89 >gi|333990392|ref|YP_004523006.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333486361|gb|AEF35753.1| transmembrane protein [Mycobacterium sp. JDM601] Length=116 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 54/83 (66%), Positives = 60/83 (73%), Gaps = 0/83 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLIIALVLA IGL ALVFAVVTSN LVAWVCI AS+LGV LLIVDALRER++G A Sbjct 1 MLIIALVLAAIGLAALVFAVVTSNALVAWVCIVASLLGVLLLIVDALRERRRGSRPPAPE 60 Query 61 AGETGVAEEADVDYPEEAPEESQ 83 GE +A VD +EA E+ Sbjct 61 PGEEPEDSDAVVDEDDEAAAETS 83 >gi|169629105|ref|YP_001702754.1| hypothetical protein MAB_2018 [Mycobacterium abscessus ATCC 19977] gi|169241072|emb|CAM62100.1| Hypothetical protein MAB_2018 [Mycobacterium abscessus] Length=154 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 41/72 (57%), Positives = 54/72 (75%), Gaps = 5/72 (6%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 MLI+ALVLA +GL ALV AVVTSN+++A+VCI A+ +GV L+I+DA+R+R G D AD Sbjct 1 MLIVALVLAAVGLAALVTAVVTSNEVLAFVCIAAAAVGVVLMIIDAIRDRHAGALD-ADE 59 Query 61 AGETGVAEEADV 72 + EEADV Sbjct 60 ESD----EEADV 67 >gi|326382568|ref|ZP_08204259.1| hypothetical protein SCNU_06500 [Gordonia neofelifaecis NRRL B-59395] gi|326198687|gb|EGD55870.1| hypothetical protein SCNU_06500 [Gordonia neofelifaecis NRRL B-59395] Length=236 Score = 51.2 bits (121), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 26/54 (49%), Positives = 35/54 (65%), Gaps = 0/54 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGG 54 ML +AL L+G LV A+VTSN +A C+ V+G+ LLIVD LR ++GG Sbjct 1 MLSLALAATLVGFGLLVVALVTSNLPLAIACVVVCVIGLILLIVDTLRANRRGG 54 >gi|289758265|ref|ZP_06517643.1| predicted protein [Mycobacterium tuberculosis T85] gi|289713829|gb|EFD77841.1| predicted protein [Mycobacterium tuberculosis T85] Length=60 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 44/44 (100%), Positives = 44/44 (100%), Gaps = 0/44 (0%) Query 75 PEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK 118 PEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK Sbjct 17 PEEAPEESQAVDAGVIGSEEPSEEASEATEESAVSADRSDDSAK 60 >gi|333919036|ref|YP_004492617.1| hypothetical protein AS9A_1365 [Amycolicicoccus subflavus DQS3-9A1] gi|333481257|gb|AEF39817.1| hypothetical protein AS9A_1365 [Amycolicicoccus subflavus DQS3-9A1] Length=63 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 28/63 (45%), Positives = 40/63 (64%), Gaps = 1/63 (1%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 ML AL+ ++G LV A++T N L AW+CIG V G+A LIVDA+R +G ++ D Sbjct 1 MLAAALIATIVGFAFLVAALLTGNLLWAWICIGICVAGIAGLIVDAVRP-ARGSVEDEDA 59 Query 61 AGE 63 +G Sbjct 60 SGT 62 >gi|229490452|ref|ZP_04384293.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229322742|gb|EEN88522.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=104 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 26/64 (41%), Positives = 37/64 (58%), Gaps = 2/64 (3%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGA--DEA 58 ML++ LVLA +G L+ A+ T + + AW CI V G LL+V AL R+ + D A Sbjct 1 MLVVTLVLAGVGFALLIVALTTGSLIWAWACIAICVAGAVLLLVSALTSRKAVPSLDDPA 60 Query 59 DGAG 62 G+G Sbjct 61 SGSG 64 >gi|312140133|ref|YP_004007469.1| integral membrane protein [Rhodococcus equi 103S] gi|311889472|emb|CBH48789.1| putative integral membrane protein [Rhodococcus equi 103S] Length=84 Score = 45.1 bits (105), Expect = 0.003, Method: Compositional matrix adjust. Identities = 30/73 (42%), Positives = 40/73 (55%), Gaps = 2/73 (2%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ--QGGADEA 58 ML++ LVLA G LV A++T + + AW CI V G LL+V AL R+ G Sbjct 1 MLVMTLVLAAAGFALLVIALMTGSVIWAWGCILVCVAGAVLLLVSALASRKAVPGETGAQ 60 Query 59 DGAGETGVAEEAD 71 + GETG A+ D Sbjct 61 NPPGETGTADLPD 73 >gi|325674385|ref|ZP_08154073.1| hypothetical protein HMPREF0724_11855 [Rhodococcus equi ATCC 33707] gi|325554645|gb|EGD24319.1| hypothetical protein HMPREF0724_11855 [Rhodococcus equi ATCC 33707] Length=84 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 31/73 (43%), Positives = 40/73 (55%), Gaps = 2/73 (2%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ--QGGADEA 58 ML++ LVLA G LV A++T + L AW CI V G LL+V AL R+ G Sbjct 1 MLVMTLVLAAAGFALLVIALMTGSVLWAWGCILVCVAGAVLLLVSALAGRKAVPGETGAQ 60 Query 59 DGAGETGVAEEAD 71 + GETG A+ D Sbjct 61 NPPGETGTADLPD 73 >gi|226307030|ref|YP_002766990.1| hypothetical protein RER_35430 [Rhodococcus erythropolis PR4] gi|226186147|dbj|BAH34251.1| hypothetical protein RER_35430 [Rhodococcus erythropolis PR4] Length=104 Score = 44.3 bits (103), Expect = 0.006, Method: Compositional matrix adjust. Identities = 22/51 (44%), Positives = 31/51 (61%), Gaps = 0/51 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ 51 ML++ LVLA +G L+ A+ T + + AW CI V G LL+V AL R+ Sbjct 1 MLVVTLVLAGVGFALLIVALTTGSLIWAWACIAICVAGAVLLLVSALTSRK 51 >gi|227504702|ref|ZP_03934751.1| hypothetical protein HMPREF0308_0972 [Corynebacterium striatum ATCC 6940] gi|227198712|gb|EEI78760.1| hypothetical protein HMPREF0308_0972 [Corynebacterium striatum ATCC 6940] Length=65 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 27/61 (45%), Positives = 37/61 (61%), Gaps = 1/61 (1%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGA-DEAD 59 ML+ ALVLA + LALV V+TS ++ A+ LG+ L I+D R+R+ A DEA Sbjct 1 MLVAALVLAFVAFLALVNFVLTSADWSLYLLFAAAGLGMVLFIIDGFRKRKPDLAQDEAA 60 Query 60 G 60 G Sbjct 61 G 61 >gi|337291111|ref|YP_004630132.1| hypothetical protein CULC22_01503 [Corynebacterium ulcerans BR-AD22] gi|334697223|gb|AEG82020.1| putative secreted protein [Corynebacterium ulcerans 809] gi|334699417|gb|AEG84213.1| putative secreted protein [Corynebacterium ulcerans BR-AD22] Length=62 Score = 40.0 bits (92), Expect = 0.11, Method: Compositional matrix adjust. Identities = 22/61 (37%), Positives = 38/61 (63%), Gaps = 3/61 (4%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ---QGGADE 57 MLI A+VL++ G + LV ++ ++ ++ W+ G VLG+ LL VD +++R+ GG Sbjct 1 MLIAAIVLSIAGFVFLVLSLSSTGEIWEWLLFGTVVLGLILLFVDMVKKRRTRSSGGKHS 60 Query 58 A 58 A Sbjct 61 A 61 >gi|343924219|ref|ZP_08763782.1| hypothetical protein GOALK_002_01730 [Gordonia alkanivorans NBRC 16433] gi|343766024|dbj|GAA10708.1| hypothetical protein GOALK_002_01730 [Gordonia alkanivorans NBRC 16433] Length=265 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/52 (37%), Positives = 29/52 (56%), Gaps = 0/52 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQ 52 ML +AL LIG + L+ ++T +A CI +LG+A L+VD R + Sbjct 1 MLTLALGATLIGFVLLILGLITGTVWLAVACIVICLLGLAFLLVDVFSGRNR 52 >gi|68535834|ref|YP_250539.1| hypothetical protein jk0759 [Corynebacterium jeikeium K411] gi|260578077|ref|ZP_05845999.1| membrane protein [Corynebacterium jeikeium ATCC 43734] gi|68263433|emb|CAI36921.1| putative membrane protein [Corynebacterium jeikeium K411] gi|258603817|gb|EEW17072.1| membrane protein [Corynebacterium jeikeium ATCC 43734] Length=51 Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust. Identities = 19/51 (38%), Positives = 35/51 (69%), Gaps = 0/51 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ 51 ML+ A++LA++G ALV ++ + AW+C+ +++GVAL D +R+R+ Sbjct 1 MLVAAILLAVLGFAALVVSLTVGSTTWAWICVTVALIGVALFAYDLIRQRK 51 >gi|319949241|ref|ZP_08023324.1| hypothetical protein ES5_07479 [Dietzia cinnamea P4] gi|319437095|gb|EFV92132.1| hypothetical protein ES5_07479 [Dietzia cinnamea P4] Length=70 Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust. Identities = 30/72 (42%), Positives = 39/72 (55%), Gaps = 6/72 (8%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADEADG 60 ML+ AL L ++G LV AV T AW CI +G+ LL++D +R R E D Sbjct 1 MLVAALGLTILGFGFLVAAVATGQIGWAWACIVVGAVGLLLLVIDLIRGR-----GERDT 55 Query 61 AGETGVAEEADV 72 G G +EEADV Sbjct 56 RGR-GTSEEADV 66 >gi|111018092|ref|YP_701064.1| hypothetical protein RHA1_ro01079 [Rhodococcus jostii RHA1] gi|110817622|gb|ABG92906.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=83 Score = 38.5 bits (88), Expect = 0.33, Method: Compositional matrix adjust. Identities = 21/51 (42%), Positives = 31/51 (61%), Gaps = 0/51 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQ 51 ML++ L LA +G LV A++T + + AW CI V G LL+V AL ++ Sbjct 1 MLVVTLALAAVGFALLVVALMTGSVVWAWGCIVVCVAGAVLLLVSALAGKK 51 >gi|262202901|ref|YP_003274109.1| hypothetical protein Gbro_3008 [Gordonia bronchialis DSM 43247] gi|262086248|gb|ACY22216.1| hypothetical protein Gbro_3008 [Gordonia bronchialis DSM 43247] Length=263 Score = 37.7 bits (86), Expect = 0.53, Method: Compositional matrix adjust. Identities = 16/53 (31%), Positives = 31/53 (59%), Gaps = 0/53 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQG 53 ML +AL L+G + L+ ++T +A CI ++G+A L++D + ++G Sbjct 1 MLTLALAATLVGFVLLILGLITGQVWLAVACIVICLIGLAFLLIDVIGSGRRG 53 >gi|54023743|ref|YP_117985.1| hypothetical protein nfa17750 [Nocardia farcinica IFM 10152] gi|54015251|dbj|BAD56621.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=64 Score = 35.8 bits (81), Expect = 2.1, Method: Compositional matrix adjust. Identities = 23/47 (49%), Positives = 30/47 (64%), Gaps = 0/47 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDAL 47 ML++ LVLA IG LV A+ T + + AW CI V+G LL+V AL Sbjct 1 MLVVTLVLAAIGFALLVTALTTGSVIWAWGCIVVCVIGAVLLLVSAL 47 >gi|302206511|gb|ADL10853.1| Hypothetical protein CpC231_1382 [Corynebacterium pseudotuberculosis C231] Length=62 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/55 (33%), Positives = 36/55 (66%), Gaps = 0/55 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGA 55 MLI A+VL++ G + LV ++ ++ ++ W+ VLG+ LL +D +++R + G+ Sbjct 1 MLIAAIVLSIAGFVFLVLSLSSTGEIWEWLLFVTVVLGMMLLFIDIVKKRGKRGS 55 >gi|300858806|ref|YP_003783789.1| hypothetical protein cpfrc_01389 [Corynebacterium pseudotuberculosis FRC41] gi|300686260|gb|ADK29182.1| putative secreted protein [Corynebacterium pseudotuberculosis FRC41] gi|302331066|gb|ADL21260.1| Hypothetical protein Cp1002_1383 [Corynebacterium pseudotuberculosis 1002] gi|308276753|gb|ADO26652.1| Putative secreted protein [Corynebacterium pseudotuberculosis I19] gi|341825193|gb|AEK92714.1| Hypothetical protein CpPAT10_1382 [Corynebacterium pseudotuberculosis PAT10] Length=64 Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust. Identities = 18/55 (33%), Positives = 36/55 (66%), Gaps = 0/55 (0%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGA 55 MLI A+VL++ G + LV ++ ++ ++ W+ VLG+ LL +D +++R + G+ Sbjct 3 MLIAAIVLSIAGFVFLVLSLSSTGEIWEWLLFVTVVLGMMLLFIDIVKKRGKRGS 57 >gi|25028600|ref|NP_738654.1| hypothetical protein CE2044 [Corynebacterium efficiens YS-314] gi|259507658|ref|ZP_05750558.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|23493886|dbj|BAC18854.1| hypothetical protein [Corynebacterium efficiens YS-314] gi|259164705|gb|EEW49259.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length=73 Score = 35.4 bits (80), Expect = 2.6, Method: Compositional matrix adjust. Identities = 24/72 (34%), Positives = 40/72 (56%), Gaps = 2/72 (2%) Query 1 MLIIALVLALIGLLALVFAVVTSNQLVAWVCIGASVLG-VALLIVDALRERQQGGADEAD 59 M I ALVL+ +G + LV + T +++ W+ I V G V LI ++ RQ+G A ++ Sbjct 1 MFIAALVLSALGFVLLVVTITTPSEIWTWLLIITVVAGLVCFLIAESSARRQRGRAHPSE 60 Query 60 GAGETGVAEEAD 71 G++ A+ D Sbjct 61 -LGDSTQAQHGD 71 >gi|336325357|ref|YP_004605323.1| hypothetical protein CRES_0803 [Corynebacterium resistens DSM 45100] gi|336101339|gb|AEI09159.1| putative secreted protein [Corynebacterium resistens DSM 45100] Length=60 Score = 34.7 bits (78), Expect = 4.3, Method: Compositional matrix adjust. Identities = 15/42 (36%), Positives = 24/42 (58%), Gaps = 0/42 (0%) Query 16 LVFAVVTSNQLVAWVCIGASVLGVALLIVDALRERQQGGADE 57 LVFA+ + +AW+CI + +GV L ++D R R+ E Sbjct 16 LVFALWQGSMTLAWICIAVAAVGVVLSLIDFARHRKSSKNSE 57 Lambda K H 0.309 0.127 0.334 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 129536132814 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40