BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2146c
Length=96
Score E
Sequences producing significant alignments: (Bits) Value
gi|15841638|ref|NP_336675.1| hypothetical protein MT2205 [Mycoba... 180 6e-44
gi|15609283|ref|NP_216662.1| transmembrane protein [Mycobacteriu... 180 8e-44
gi|254232305|ref|ZP_04925632.1| hypothetical protein TBCG_02095 ... 178 3e-43
gi|240168210|ref|ZP_04746869.1| transmembrane protein [Mycobacte... 176 9e-43
gi|118463067|ref|YP_881548.1| transmembrane protein [Mycobacteri... 176 9e-43
gi|336461973|gb|EGO40824.1| YGGT family protein [Mycobacterium a... 176 1e-42
gi|306972509|ref|ZP_07485170.1| conserved membrane protein [Myco... 176 1e-42
gi|296166013|ref|ZP_06848465.1| transmembrane protein [Mycobacte... 175 2e-42
gi|254775017|ref|ZP_05216533.1| transmembrane protein [Mycobacte... 175 2e-42
gi|183983176|ref|YP_001851467.1| hypothetical protein MMAR_3186 ... 174 5e-42
gi|342859862|ref|ZP_08716515.1| transmembrane protein [Mycobacte... 173 7e-42
gi|118618788|ref|YP_907120.1| hypothetical protein MUL_3494 [Myc... 173 7e-42
gi|41407988|ref|NP_960824.1| hypothetical protein MAP1890c [Myco... 172 1e-41
gi|108800215|ref|YP_640412.1| hypothetical protein Mmcs_3249 [My... 167 4e-40
gi|15827441|ref|NP_301704.1| hypothetical protein ML0921 [Mycoba... 166 9e-40
gi|145223582|ref|YP_001134260.1| hypothetical protein Mflv_2995 ... 166 1e-39
gi|120404488|ref|YP_954317.1| hypothetical protein Mvan_3516 [My... 164 4e-39
gi|118473959|ref|YP_888495.1| transmembrane protein [Mycobacteri... 162 1e-38
gi|333990389|ref|YP_004523003.1| transmembrane protein [Mycobact... 152 1e-35
gi|226360223|ref|YP_002778001.1| hypothetical protein ROP_08090 ... 118 3e-25
gi|111018094|ref|YP_701066.1| hypothetical protein RHA1_ro01081 ... 118 3e-25
gi|54023741|ref|YP_117983.1| hypothetical protein nfa17730 [Noca... 118 4e-25
gi|312140135|ref|YP_004007471.1| integral membrane protein [Rhod... 116 1e-24
gi|169629103|ref|YP_001702752.1| hypothetical protein MAB_2016 [... 114 4e-24
gi|291003758|ref|ZP_06561731.1| YGGT family protein [Saccharopol... 101 3e-20
gi|302528451|ref|ZP_07280793.1| transmembrane protein [Streptomy... 101 3e-20
gi|300784863|ref|YP_003765154.1| hypothetical protein AMED_2959 ... 101 4e-20
gi|324997734|ref|ZP_08118846.1| hypothetical protein PseP1_03160... 99.8 1e-19
gi|331696627|ref|YP_004332866.1| hypothetical protein Psed_2813 ... 99.0 2e-19
gi|326382566|ref|ZP_08204257.1| hypothetical protein SCNU_06490 ... 97.8 5e-19
gi|226307032|ref|YP_002766992.1| hypothetical protein RER_35450 ... 96.7 9e-19
gi|257056709|ref|YP_003134541.1| YGGT family protein [Saccharomo... 95.9 2e-18
gi|262202903|ref|YP_003274111.1| hypothetical protein Gbro_3010 ... 95.1 3e-18
gi|333919005|ref|YP_004492586.1| hypothetical protein AS9A_1334 ... 94.0 7e-18
gi|343924217|ref|ZP_08763780.1| hypothetical protein GOALK_002_0... 89.7 1e-16
gi|256379755|ref|YP_003103415.1| hypothetical protein Amir_5756 ... 87.8 4e-16
gi|296394948|ref|YP_003659832.1| hypothetical protein Srot_2564 ... 84.7 4e-15
gi|323356545|ref|YP_004222941.1| integral membrane protein [Micr... 83.2 1e-14
gi|296269392|ref|YP_003652024.1| hypothetical protein Tbis_1413 ... 82.0 3e-14
gi|269795568|ref|YP_003315023.1| YGGT family protein [Sanguibact... 81.6 3e-14
gi|296140335|ref|YP_003647578.1| hypothetical protein Tpau_2639 ... 81.3 4e-14
gi|317124655|ref|YP_004098767.1| hypothetical protein Intca_1526... 80.9 6e-14
gi|337765206|emb|CCB73915.1| putative membrane protein [Streptom... 80.5 9e-14
gi|271964381|ref|YP_003338577.1| hypothetical protein Sros_2877 ... 80.1 1e-13
gi|319950067|ref|ZP_08024026.1| hypothetical protein ES5_11021 [... 80.1 1e-13
gi|291301472|ref|YP_003512750.1| hypothetical protein Snas_4005 ... 79.7 1e-13
gi|295394745|ref|ZP_06804960.1| possible integral membrane prote... 79.0 2e-13
gi|269127130|ref|YP_003300500.1| hypothetical protein Tcur_2920 ... 79.0 2e-13
gi|260906532|ref|ZP_05914854.1| hypothetical protein BlinB_14475... 78.6 3e-13
gi|152967136|ref|YP_001362920.1| hypothetical protein Krad_3192 ... 78.2 3e-13
>gi|15841638|ref|NP_336675.1| hypothetical protein MT2205 [Mycobacterium tuberculosis CDC1551]
gi|13881890|gb|AAK46489.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
gi|323719301|gb|EGB28443.1| membrane protein [Mycobacterium tuberculosis CDC1551A]
Length=128
Score = 180 bits (456), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 96/96 (100%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR
Sbjct 33 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 92
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 93 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 128
>gi|15609283|ref|NP_216662.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|31793326|ref|NP_855819.1| transmembrane protein [Mycobacterium bovis AF2122/97]
gi|121638028|ref|YP_978252.1| putative transmembrane protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
69 more sequence titles
Length=96
Score = 180 bits (456), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 95/96 (99%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+VVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR
Sbjct 1 MVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|254232305|ref|ZP_04925632.1| hypothetical protein TBCG_02095 [Mycobacterium tuberculosis C]
gi|308403785|ref|ZP_07493912.2| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
gi|124601364|gb|EAY60374.1| hypothetical protein TBCG_02095 [Mycobacterium tuberculosis C]
gi|308365633|gb|EFP54484.1| conserved membrane protein [Mycobacterium tuberculosis SUMu012]
Length=95
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/94 (100%), Positives = 94/94 (100%), Gaps = 0/94 (0%)
Query 3 VFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRL 62
VFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRL
Sbjct 2 VFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRL 61
Query 63 IPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
IPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 62 IPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 95
>gi|240168210|ref|ZP_04746869.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=96
Score = 176 bits (447), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 92/96 (96%), Positives = 96/96 (100%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V+FFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTG+TVVILEIIMSITDPPVK+LR
Sbjct 1 MVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGLTVVILEIIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|118463067|ref|YP_881548.1| transmembrane protein [Mycobacterium avium 104]
gi|118164354|gb|ABK65251.1| possible conserved transmembrane protein [Mycobacterium avium
104]
Length=115
Score = 176 bits (446), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 91/96 (95%), Positives = 95/96 (99%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
LV+FFQILGFALFIFWLLLIARVVVEFIRSFSRDW PTG+TVV+LEIIMSITDPPVK+LR
Sbjct 20 LVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPTGITVVVLEIIMSITDPPVKLLR 79
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 80 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 115
>gi|336461973|gb|EGO40824.1| YGGT family protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=109
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/96 (95%), Positives = 95/96 (99%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
LV+FFQILGFALFIFWLLLIARVVVEFIRSFSRDW PTG+TVV+LEIIMSITDPPVK+LR
Sbjct 14 LVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPTGITVVVLEIIMSITDPPVKLLR 73
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 74 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 109
>gi|306972509|ref|ZP_07485170.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
gi|308358063|gb|EFP46914.1| conserved membrane protein [Mycobacterium tuberculosis SUMu010]
Length=112
Score = 176 bits (445), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 92/92 (100%), Positives = 92/92 (100%), Gaps = 0/92 (0%)
Query 5 FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP 64
FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP
Sbjct 21 FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP 80
Query 65 QLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
QLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 81 QLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 112
>gi|296166013|ref|ZP_06848465.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898634|gb|EFG78188.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=96
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 91/96 (95%), Positives = 95/96 (99%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V+FFQILGFALFIFWLLLIARVVVEFIRSFSRDW PTG+TVVILEIIMSITDPPVK+LR
Sbjct 1 MVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPTGITVVILEIIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|254775017|ref|ZP_05216533.1| transmembrane protein [Mycobacterium avium subsp. avium ATCC
25291]
gi|254821927|ref|ZP_05226928.1| transmembrane protein [Mycobacterium intracellulare ATCC 13950]
Length=96
Score = 175 bits (443), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 90/96 (94%), Positives = 95/96 (99%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V+FFQILGFALFIFWLLLIARVVVEFIRSFSRDW PTG+TVV+LEIIMSITDPPVK+LR
Sbjct 1 MVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPTGITVVVLEIIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|183983176|ref|YP_001851467.1| hypothetical protein MMAR_3186 [Mycobacterium marinum M]
gi|183176502|gb|ACC41612.1| conserved hypothetical membrane protein [Mycobacterium marinum
M]
Length=95
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 91/95 (96%), Positives = 94/95 (99%), Gaps = 0/95 (0%)
Query 2 VVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRR 61
++FFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTG TVVILEIIMSITDPPVK+LRR
Sbjct 1 MLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGFTVVILEIIMSITDPPVKLLRR 60
Query 62 LIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
LIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 LIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 95
>gi|342859862|ref|ZP_08716515.1| transmembrane protein [Mycobacterium colombiense CECT 3035]
gi|342132994|gb|EGT86214.1| transmembrane protein [Mycobacterium colombiense CECT 3035]
Length=96
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 89/96 (93%), Positives = 95/96 (99%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V+FFQILGFALFIFWLLLIARVVVEFIRSFSRDW PTG+TVV+LEII+SITDPPVK+LR
Sbjct 1 MVLFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPTGITVVVLEIILSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|118618788|ref|YP_907120.1| hypothetical protein MUL_3494 [Mycobacterium ulcerans Agy99]
gi|118570898|gb|ABL05649.1| conserved hypothetical membrane protein [Mycobacterium ulcerans
Agy99]
Length=96
Score = 173 bits (439), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 91/96 (95%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V+FFQILGFALFIFWLLLIARVVVE IRSFSRDWRPTG TVVILEIIMSITDPPVK+LR
Sbjct 1 MVLFFQILGFALFIFWLLLIARVVVELIRSFSRDWRPTGFTVVILEIIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|41407988|ref|NP_960824.1| hypothetical protein MAP1890c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396342|gb|AAS04207.1| hypothetical protein MAP_1890c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=96
Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 89/96 (93%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V+FFQILGFALFIFWLLLIAR VVEFIRSFSRDW PTG+TVV+LEIIMSITDPPVK+LR
Sbjct 1 MVLFFQILGFALFIFWLLLIARFVVEFIRSFSRDWHPTGITVVVLEIIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|108800215|ref|YP_640412.1| hypothetical protein Mmcs_3249 [Mycobacterium sp. MCS]
gi|119869343|ref|YP_939295.1| hypothetical protein Mkms_3311 [Mycobacterium sp. KMS]
gi|126435838|ref|YP_001071529.1| hypothetical protein Mjls_3260 [Mycobacterium sp. JLS]
gi|108770634|gb|ABG09356.1| conserved hypothetical protein [Mycobacterium sp. MCS]
gi|119695432|gb|ABL92505.1| conserved hypothetical protein [Mycobacterium sp. KMS]
gi|126235638|gb|ABN99038.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=96
Score = 167 bits (423), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 84/96 (88%), Positives = 94/96 (98%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ +FF+ILGFALF+FWLLLIARVVVEFIRSFSRDWRP G+TVV+LE+IM++TDPPVK+LR
Sbjct 1 MALFFEILGFALFVFWLLLIARVVVEFIRSFSRDWRPRGLTVVVLEVIMTLTDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
>gi|15827441|ref|NP_301704.1| hypothetical protein ML0921 [Mycobacterium leprae TN]
gi|221229918|ref|YP_002503334.1| hypothetical protein MLBr_00921 [Mycobacterium leprae Br4923]
gi|13092991|emb|CAC31302.1| possible membrane protein [Mycobacterium leprae]
gi|219933025|emb|CAR71016.1| possible membrane protein [Mycobacterium leprae Br4923]
Length=96
Score = 166 bits (421), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 85/96 (89%), Positives = 90/96 (94%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ +F+QILG ALF+FWLLLIARVVVEFIRSFSRDWRP GVTVVILE IMSITDPPVK+LR
Sbjct 1 MALFYQILGLALFVFWLLLIARVVVEFIRSFSRDWRPNGVTVVILETIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLA AAA
Sbjct 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLALSAAA 96
>gi|145223582|ref|YP_001134260.1| hypothetical protein Mflv_2995 [Mycobacterium gilvum PYR-GCK]
gi|315443929|ref|YP_004076808.1| YGGT family protein [Mycobacterium sp. Spyr1]
gi|145216068|gb|ABP45472.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
gi|315262232|gb|ADT98973.1| YGGT family protein [Mycobacterium sp. Spyr1]
Length=97
Score = 166 bits (420), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 85/93 (92%), Positives = 90/93 (97%), Gaps = 0/93 (0%)
Query 4 FFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLI 63
FF ILGFALFIFWLLLIARVVVEFIRSFSRDW P GVTVVILEIIM++TDPPVK+LRRLI
Sbjct 4 FFSILGFALFIFWLLLIARVVVEFIRSFSRDWHPRGVTVVILEIIMTLTDPPVKLLRRLI 63
Query 64 PQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
PQLTIGA+RFDLSIMVLLL+AFIGMQLAFGAAA
Sbjct 64 PQLTIGAIRFDLSIMVLLLLAFIGMQLAFGAAA 96
>gi|120404488|ref|YP_954317.1| hypothetical protein Mvan_3516 [Mycobacterium vanbaalenii PYR-1]
gi|119957306|gb|ABM14311.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=96
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 83/95 (88%), Positives = 91/95 (96%), Gaps = 0/95 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ +FF+ILGFALF+FWLLLIARVVVEFIRSFSRDW P G TVVILEIIM++TDPPVK+LR
Sbjct 1 MALFFEILGFALFVFWLLLIARVVVEFIRSFSRDWHPRGATVVILEIIMTLTDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA 95
R+IPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA
Sbjct 61 RIIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA 95
>gi|118473959|ref|YP_888495.1| transmembrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118175246|gb|ABK76142.1| possible conserved transmembrane protein [Mycobacterium smegmatis
str. MC2 155]
Length=96
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 82/93 (89%), Positives = 89/93 (96%), Gaps = 0/93 (0%)
Query 3 VFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRL 62
+FFQILGFALFIFWLLLIARVVVEFIRSFSRDW P G TVVILE+IM++TDPPVK+LRR+
Sbjct 3 LFFQILGFALFIFWLLLIARVVVEFIRSFSRDWHPRGFTVVILELIMTVTDPPVKLLRRI 62
Query 63 IPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA 95
IPQLT+GAVRFDLSIMVLLL AFIGMQLAFGAA
Sbjct 63 IPQLTVGAVRFDLSIMVLLLAAFIGMQLAFGAA 95
>gi|333990389|ref|YP_004523003.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333486357|gb|AEF35749.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=96
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/96 (80%), Positives = 86/96 (90%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ +FF ILG ALF+FWLLLIAR+V+EF+RSFSRDW P G TVVILE+IMSITDPPVK+LR
Sbjct 1 MALFFTILGIALFVFWLLLIARIVIEFVRSFSRDWHPRGATVVILELIMSITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIPQLTIGAVR DLSIMVLLL+AFIGM+LA AA
Sbjct 61 RLIPQLTIGAVRIDLSIMVLLLIAFIGMELALQHAA 96
>gi|226360223|ref|YP_002778001.1| hypothetical protein ROP_08090 [Rhodococcus opacus B4]
gi|226238708|dbj|BAH49056.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=100
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/91 (63%), Positives = 72/91 (80%), Gaps = 0/91 (0%)
Query 5 FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP 64
F ++ LF+FWLLLI R++VEF+R+F+RDWRPTGV VVILE I ++TDPPVK+LRRLIP
Sbjct 4 FSVIYLILFVFWLLLIGRIIVEFVRTFARDWRPTGVVVVILEAIFTVTDPPVKLLRRLIP 63
Query 65 QLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA 95
+ +G VR DLSIMVLL + FI M + G A
Sbjct 64 PINLGGVRLDLSIMVLLFIVFILMSIVQGQA 94
>gi|111018094|ref|YP_701066.1| hypothetical protein RHA1_ro01081 [Rhodococcus jostii RHA1]
gi|110817624|gb|ABG92908.1| possible membrane protein [Rhodococcus jostii RHA1]
Length=100
Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/91 (63%), Positives = 72/91 (80%), Gaps = 0/91 (0%)
Query 5 FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP 64
F ++ LF+FWLLLI R++VEF+R+F+RDWRPTGV VVILE I ++TDPPVK+LRRLIP
Sbjct 4 FSVIYLILFVFWLLLIGRIIVEFVRTFARDWRPTGVVVVILEAIFTVTDPPVKLLRRLIP 63
Query 65 QLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA 95
+ +G VR DLSIMVLL + FI M + G A
Sbjct 64 PINLGGVRLDLSIMVLLFIVFILMSIVQGQA 94
>gi|54023741|ref|YP_117983.1| hypothetical protein nfa17730 [Nocardia farcinica IFM 10152]
gi|54015249|dbj|BAD56619.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=101
Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/90 (68%), Positives = 76/90 (85%), Gaps = 0/90 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+V F +L F LFIFWLLLI+RV+VEFIRSF+RDWRPTGV VV+LE+I +ITDPPVK+LR
Sbjct 1 MVALFAVLYFVLFIFWLLLISRVIVEFIRSFARDWRPTGVVVVVLEVIFTITDPPVKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQL 90
RLIP +++G +R DLSIMVLL + FI M +
Sbjct 61 RLIPPVSLGGIRLDLSIMVLLFIVFILMSI 90
>gi|312140135|ref|YP_004007471.1| integral membrane protein [Rhodococcus equi 103S]
gi|325674383|ref|ZP_08154071.1| transmembrane protein [Rhodococcus equi ATCC 33707]
gi|311889474|emb|CBH48791.1| putative integral membrane protein [Rhodococcus equi 103S]
gi|325554643|gb|EGD24317.1| transmembrane protein [Rhodococcus equi ATCC 33707]
Length=100
Score = 116 bits (290), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/92 (64%), Positives = 73/92 (80%), Gaps = 0/92 (0%)
Query 5 FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP 64
F ++ LFIFWLLLI R++VEFIR F+RDWRPTG VV+LE I ++TDPPVK+LRRLIP
Sbjct 4 FSVIYVILFIFWLLLIGRIIVEFIRVFARDWRPTGFVVVVLEAIFTVTDPPVKLLRRLIP 63
Query 65 QLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
+++G VR DLSIMVLL + FI MQ+ G A+
Sbjct 64 PISLGGVRLDLSIMVLLFLLFILMQVVAGLAS 95
>gi|169629103|ref|YP_001702752.1| hypothetical protein MAB_2016 [Mycobacterium abscessus ATCC 19977]
gi|169241070|emb|CAM62098.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=97
Score = 114 bits (285), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/96 (65%), Positives = 80/96 (84%), Gaps = 0/96 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ +FF+I+G+AL +F LLL AR+V+E I+S SRDW P G TVVILE+I +ITDPPV++LR
Sbjct 1 MALFFEIIGYALLLFCLLLFARIVIETIQSISRDWHPRGATVVILELIFTITDPPVRLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAAA 96
RLIP L++GAVRFDLSI +LLLV F GM++AF AA
Sbjct 61 RLIPPLSLGAVRFDLSITLLLLVGFFGMKVAFVMAA 96
>gi|291003758|ref|ZP_06561731.1| YGGT family protein [Saccharopolyspora erythraea NRRL 2338]
Length=94
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/84 (60%), Positives = 64/84 (77%), Gaps = 0/84 (0%)
Query 7 ILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQL 66
+L + LF FWLLL AR+V+E +R F+RDWRP G + LE I ++TDPP+++LRR+IP +
Sbjct 7 VLYYVLFFFWLLLTARIVIELVRVFARDWRPAGGVAIALESIYTVTDPPIRLLRRVIPTV 66
Query 67 TIGAVRFDLSIMVLLLVAFIGMQL 90
IG V DLSIMVLLLV FI MQL
Sbjct 67 RIGGVGLDLSIMVLLLVVFILMQL 90
>gi|302528451|ref|ZP_07280793.1| transmembrane protein [Streptomyces sp. AA4]
gi|302437346|gb|EFL09162.1| transmembrane protein [Streptomyces sp. AA4]
Length=96
Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 49/82 (60%), Positives = 61/82 (75%), Gaps = 0/82 (0%)
Query 10 FALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIG 69
+ LF FWLLL AR+VVE +R+F+R+WRP G V LE I ++TDPPV++ RR+IP + IG
Sbjct 13 YVLFAFWLLLTARIVVELVRTFAREWRPAGGVAVTLETIYTVTDPPVRLFRRIIPMVRIG 72
Query 70 AVRFDLSIMVLLLVAFIGMQLA 91
V DLSIMVLLLV F MQL
Sbjct 73 GVGLDLSIMVLLLVVFFAMQLT 94
>gi|300784863|ref|YP_003765154.1| hypothetical protein AMED_2959 [Amycolatopsis mediterranei U32]
gi|299794377|gb|ADJ44752.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
gi|340526292|gb|AEK41497.1| hypothetical protein RAM_15045 [Amycolatopsis mediterranei S699]
Length=91
Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 49/85 (58%), Positives = 63/85 (75%), Gaps = 0/85 (0%)
Query 7 ILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQL 66
++ + LF FWLLL AR+VVE +R+F+R+W P G V LE I ++TDPPV++ RR+IP +
Sbjct 4 VVWYVLFAFWLLLTARIVVELVRTFAREWHPAGGVAVTLETIYTVTDPPVRLFRRIIPMV 63
Query 67 TIGAVRFDLSIMVLLLVAFIGMQLA 91
IG V DLSIMVLLLV F MQLA
Sbjct 64 RIGGVGLDLSIMVLLLVVFFAMQLA 88
>gi|324997734|ref|ZP_08118846.1| hypothetical protein PseP1_03160 [Pseudonocardia sp. P1]
Length=98
Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/79 (61%), Positives = 61/79 (78%), Gaps = 0/79 (0%)
Query 10 FALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIG 69
+ LF FWLLL AR+VVE +RSF+R WRP G V LE++ ++TDPPVK+LRR+IP + IG
Sbjct 11 YVLFFFWLLLAARIVVEMVRSFARQWRPAGPPAVALEVVFTVTDPPVKLLRRVIPVVRIG 70
Query 70 AVRFDLSIMVLLLVAFIGM 88
V DLSIMV++LV FI M
Sbjct 71 GVGLDLSIMVVVLVVFIAM 89
>gi|331696627|ref|YP_004332866.1| hypothetical protein Psed_2813 [Pseudonocardia dioxanivorans
CB1190]
gi|326951316|gb|AEA25013.1| protein of unknown function YGGT [Pseudonocardia dioxanivorans
CB1190]
Length=95
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/83 (58%), Positives = 62/83 (75%), Gaps = 0/83 (0%)
Query 7 ILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQL 66
+L + LF+FWLLL AR+VVE + +F+R WRP G + + LE I ++TDPPVK+LRR+IP +
Sbjct 8 VLYYVLFVFWLLLTARIVVELVHAFARKWRPAGQSAIALEAIFTVTDPPVKLLRRVIPTV 67
Query 67 TIGAVRFDLSIMVLLLVAFIGMQ 89
IG V DLSIMVLLL FI M
Sbjct 68 RIGGVGLDLSIMVLLLAVFILMD 90
>gi|326382566|ref|ZP_08204257.1| hypothetical protein SCNU_06490 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198685|gb|EGD55868.1| hypothetical protein SCNU_06490 [Gordonia neofelifaecis NRRL
B-59395]
Length=99
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/92 (54%), Positives = 69/92 (75%), Gaps = 0/92 (0%)
Query 4 FFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLI 63
F IL F LF + LLL+ R VVE ++SF+R WRP+G VV++E++ ++TDPPVK+LRRLI
Sbjct 4 FLWILYFVLFCYVLLLLGRFVVEMVQSFARRWRPSGAAVVVIELVFTLTDPPVKLLRRLI 63
Query 64 PQLTIGAVRFDLSIMVLLLVAFIGMQLAFGAA 95
P L +G VR DLS+M++L+V I M++ G A
Sbjct 64 PPLPLGPVRLDLSLMIVLIVLSILMRVVLGFA 95
>gi|226307032|ref|YP_002766992.1| hypothetical protein RER_35450 [Rhodococcus erythropolis PR4]
gi|229490448|ref|ZP_04384289.1| putative conserved transmembrane protein [Rhodococcus erythropolis
SK121]
gi|226186149|dbj|BAH34253.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
gi|229322738|gb|EEN88518.1| putative conserved transmembrane protein [Rhodococcus erythropolis
SK121]
Length=92
Score = 96.7 bits (239), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 47/70 (68%), Positives = 56/70 (80%), Gaps = 0/70 (0%)
Query 20 IARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVRFDLSIMV 79
I RV+VEF+RSF+RDWRPTG+ VILE I +ITDPPVK+LRRLIP + +G VR DLSIMV
Sbjct 20 IGRVIVEFVRSFARDWRPTGLVAVILETIFTITDPPVKLLRRLIPPINLGGVRLDLSIMV 79
Query 80 LLLVAFIGMQ 89
LL + I M
Sbjct 80 LLFIVIILMS 89
>gi|257056709|ref|YP_003134541.1| YGGT family protein [Saccharomonospora viridis DSM 43017]
gi|256586581|gb|ACU97714.1| YGGT family protein [Saccharomonospora viridis DSM 43017]
Length=94
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/72 (64%), Positives = 58/72 (81%), Gaps = 0/72 (0%)
Query 21 ARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVRFDLSIMVL 80
AR+VVE +R+F+RDWRP+G V LE I ++TDPPV+++RR+IP + IG V DLSIMVL
Sbjct 21 ARIVVELVRAFARDWRPSGGVAVALETIYTVTDPPVRLVRRIIPIVRIGGVGLDLSIMVL 80
Query 81 LLVAFIGMQLAF 92
LLV FIGMQLA
Sbjct 81 LLVVFIGMQLAL 92
>gi|262202903|ref|YP_003274111.1| hypothetical protein Gbro_3010 [Gordonia bronchialis DSM 43247]
gi|262086250|gb|ACY22218.1| protein of unknown function YGGT [Gordonia bronchialis DSM 43247]
Length=109
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/73 (58%), Positives = 59/73 (81%), Gaps = 0/73 (0%)
Query 21 ARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVRFDLSIMVL 80
AR+VVE +R+F+RDWRPTGVTVVILE+I + TDPP+K LRR++P + +G VR DLS+M++
Sbjct 21 ARLVVELVRTFARDWRPTGVTVVILEVIFTTTDPPIKALRRVLPPIPLGPVRLDLSLMIV 80
Query 81 LLVAFIGMQLAFG 93
++V I M + G
Sbjct 81 MIVVIIAMNVVSG 93
>gi|333919005|ref|YP_004492586.1| hypothetical protein AS9A_1334 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481226|gb|AEF39786.1| Possible membrane protein [Amycolicicoccus subflavus DQS3-9A1]
Length=98
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/71 (62%), Positives = 57/71 (81%), Gaps = 0/71 (0%)
Query 12 LFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAV 71
LF + L LIARVV+EFIR F+RDW PTG VVILE I +ITDPP+K LR+ IP + +G+V
Sbjct 11 LFFYSLFLIARVVIEFIRMFARDWHPTGAIVVILEFIFTITDPPIKFLRKFIPPIPLGSV 70
Query 72 RFDLSIMVLLL 82
R DLS+++LL+
Sbjct 71 RLDLSVLILLI 81
>gi|343924217|ref|ZP_08763780.1| hypothetical protein GOALK_002_01710 [Gordonia alkanivorans NBRC
16433]
gi|343766022|dbj|GAA10706.1| hypothetical protein GOALK_002_01710 [Gordonia alkanivorans NBRC
16433]
Length=113
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 37/73 (51%), Positives = 57/73 (79%), Gaps = 0/73 (0%)
Query 21 ARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVRFDLSIMVL 80
R+VVE +R+F+R+WRPTGV VVI+E + ++TDPP+K LRR++P + +G +R DLS+M++
Sbjct 22 GRLVVELVRTFAREWRPTGVAVVIIETVFTLTDPPIKALRRVLPPIPLGPIRLDLSLMIV 81
Query 81 LLVAFIGMQLAFG 93
+LV I M + G
Sbjct 82 MLVVIIAMNIVNG 94
>gi|256379755|ref|YP_003103415.1| hypothetical protein Amir_5756 [Actinosynnema mirum DSM 43827]
gi|255924058|gb|ACU39569.1| protein of unknown function YGGT [Actinosynnema mirum DSM 43827]
Length=94
Score = 87.8 bits (216), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 48/79 (61%), Positives = 63/79 (80%), Gaps = 0/79 (0%)
Query 13 FIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVR 72
F FWLLLIAR+VVE +RSF+RDWRP G T V LE + ++TDPP+++LRR+IP + IG +
Sbjct 13 FSFWLLLIARMVVEGVRSFARDWRPAGGTAVALETVYTVTDPPIRLLRRVIPTVRIGNIS 72
Query 73 FDLSIMVLLLVAFIGMQLA 91
DLSI+VLLLV I M++A
Sbjct 73 LDLSIIVLLLVVIILMRVA 91
>gi|296394948|ref|YP_003659832.1| hypothetical protein Srot_2564 [Segniliparus rotundus DSM 44985]
gi|296182095|gb|ADG99001.1| protein of unknown function YGGT [Segniliparus rotundus DSM 44985]
Length=92
Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/76 (61%), Positives = 59/76 (78%), Gaps = 0/76 (0%)
Query 15 FWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVRFD 74
FWLLLI R VVE ++SFS DWRP GV VV+LE++ +TDPPV+ RR+IP TIGAVR D
Sbjct 15 FWLLLIVRSVVELVQSFSPDWRPKGVLVVVLELVFMVTDPPVRFFRRIIPNTTIGAVRVD 74
Query 75 LSIMVLLLVAFIGMQL 90
+S+MVL+ V I ++L
Sbjct 75 ISLMVLMFVVLIALRL 90
>gi|323356545|ref|YP_004222941.1| integral membrane protein [Microbacterium testaceum StLB037]
gi|323272916|dbj|BAJ73061.1| predicted integral membrane protein [Microbacterium testaceum
StLB037]
Length=100
Score = 83.2 bits (204), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/81 (47%), Positives = 58/81 (72%), Gaps = 0/81 (0%)
Query 6 QILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQ 65
IL LFI+ +LL+AR+V+E+I F+R+WRP G T+VI EI+ ++TDPP+K++RR IP
Sbjct 9 SILSALLFIYIVLLLARLVLEYIPMFNREWRPRGATLVIAEIVYTVTDPPIKLIRRFIPP 68
Query 66 LTIGAVRFDLSIMVLLLVAFI 86
L IG + FD + + + F+
Sbjct 69 LRIGGIAFDFGFAITMFLCFL 89
>gi|296269392|ref|YP_003652024.1| hypothetical protein Tbis_1413 [Thermobispora bispora DSM 43833]
gi|296092179|gb|ADG88131.1| protein of unknown function YGGT [Thermobispora bispora DSM 43833]
Length=95
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/85 (49%), Positives = 60/85 (71%), Gaps = 0/85 (0%)
Query 6 QILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQ 65
++L FAL I+ LLLI R++ + + +F+R WRPTGV +V+ E I ++TDPP+K LRR IP
Sbjct 6 ELLIFALTIYLLLLIGRMIFDMVLAFARSWRPTGVVLVLAEAIYTVTDPPLKYLRRFIPP 65
Query 66 LTIGAVRFDLSIMVLLLVAFIGMQL 90
L +G V DLS VL +V + +Q+
Sbjct 66 LRLGTVALDLSFTVLFIVVLVLIQI 90
>gi|269795568|ref|YP_003315023.1| YGGT family protein [Sanguibacter keddieii DSM 10542]
gi|269097753|gb|ACZ22189.1| YGGT family protein [Sanguibacter keddieii DSM 10542]
Length=95
Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/76 (48%), Positives = 54/76 (72%), Gaps = 0/76 (0%)
Query 5 FQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIP 64
F +L F++ L L RV+ +++ FSRDWRP GV +V+ E++ S+TDPP++ LRR IP
Sbjct 3 FSLLAIVCFLYLLTLFGRVIFSWVQVFSRDWRPRGVALVVAEVVFSLTDPPLRFLRRFIP 62
Query 65 QLTIGAVRFDLSIMVL 80
LTIG +R DL +++L
Sbjct 63 PLTIGQIRLDLGMLIL 78
>gi|296140335|ref|YP_003647578.1| hypothetical protein Tpau_2639 [Tsukamurella paurometabola DSM
20162]
gi|296028469|gb|ADG79239.1| protein of unknown function YGGT [Tsukamurella paurometabola
DSM 20162]
Length=99
Score = 81.3 bits (199), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/84 (46%), Positives = 62/84 (74%), Gaps = 1/84 (1%)
Query 14 IFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQLTIGAVRF 73
++ LLI R+V+E ++SF+R+W P+G+ V+LE I ++TDPP+K+LR+ IP L IG ++
Sbjct 14 VYTFLLIVRLVIEVVKSFAREWNPSGIVAVLLEAIFTVTDPPLKLLRKFIPPLKIGQIQL 73
Query 74 DLSIMVL-LLVAFIGMQLAFGAAA 96
DLS +VL +L+A + + F AA+
Sbjct 74 DLSYLVLFILLAVLRSLIQFAAAS 97
>gi|317124655|ref|YP_004098767.1| hypothetical protein Intca_1526 [Intrasporangium calvum DSM 43043]
gi|315588743|gb|ADU48040.1| protein of unknown function YGGT [Intrasporangium calvum DSM
43043]
Length=94
Score = 80.9 bits (198), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/88 (44%), Positives = 62/88 (71%), Gaps = 0/88 (0%)
Query 3 VFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRL 62
V + I G +F F++ LIAR V+E+++ SR WRP+G+ +V+ E + ++TDPP++ LR++
Sbjct 3 VIWTIYGVVVFTFFIALIARFVLEWVQVLSRSWRPSGLVLVLAEGVYTVTDPPLRALRKV 62
Query 63 IPQLTIGAVRFDLSIMVLLLVAFIGMQL 90
IP T+G VR DLS +VL+L+ + L
Sbjct 63 IPSPTLGGVRLDLSFLVLMLLTSFALNL 90
>gi|337765206|emb|CCB73915.1| putative membrane protein [Streptomyces cattleya NRRL 8057]
Length=94
Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 39/81 (49%), Positives = 57/81 (71%), Gaps = 0/81 (0%)
Query 6 QILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQ 65
Q++ AL F ++LI R+V+E++ F+R WRP VVILE ++TDPP+K+LRRLIP
Sbjct 6 QVIHIALMCFLIVLIFRLVMEYVFQFARSWRPGKAMVVILEATYTVTDPPLKLLRRLIPP 65
Query 66 LTIGAVRFDLSIMVLLLVAFI 86
L +G V DLS VL+++ +I
Sbjct 66 LRLGGVALDLSFFVLMIIVYI 86
>gi|271964381|ref|YP_003338577.1| hypothetical protein Sros_2877 [Streptosporangium roseum DSM
43021]
gi|270507556|gb|ACZ85834.1| hypothetical protein Sros_2877 [Streptosporangium roseum DSM
43021]
Length=95
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/85 (48%), Positives = 60/85 (71%), Gaps = 0/85 (0%)
Query 6 QILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQ 65
+IL L ++ +LLI R++ E +++F+R WRPTGV +V+ E + ++TDPP+K LRR IP
Sbjct 6 EILVVILSLYLVLLIGRMIFETVQAFARQWRPTGVVLVLAEAVYTVTDPPLKFLRRFIPP 65
Query 66 LTIGAVRFDLSIMVLLLVAFIGMQL 90
L +G V FDLS VL +V + +QL
Sbjct 66 LRLGTVAFDLSFTVLFIVVLVLIQL 90
>gi|319950067|ref|ZP_08024026.1| hypothetical protein ES5_11021 [Dietzia cinnamea P4]
gi|319436268|gb|EFV91429.1| hypothetical protein ES5_11021 [Dietzia cinnamea P4]
Length=95
Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/77 (50%), Positives = 55/77 (72%), Gaps = 0/77 (0%)
Query 7 ILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQL 66
+L + + +FW LL+ R+VVE I SFSR W P GV V+LE + +ITDPPVK LR++I +
Sbjct 7 VLYYVIEVFWFLLLGRIVVEMIASFSRSWTPKGVLAVVLEWLFTITDPPVKALRKVIKPV 66
Query 67 TIGAVRFDLSIMVLLLV 83
+G V DLS++VL ++
Sbjct 67 RLGQVSLDLSVLVLFII 83
>gi|291301472|ref|YP_003512750.1| hypothetical protein Snas_4005 [Stackebrandtia nassauensis DSM
44728]
gi|290570692|gb|ADD43657.1| protein of unknown function YGGT [Stackebrandtia nassauensis
DSM 44728]
Length=99
Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/81 (52%), Positives = 55/81 (68%), Gaps = 0/81 (0%)
Query 6 QILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQ 65
Q L AL++F+LLL+AR+V + FSR W P T + LE+I S TDPP+K LRRLIP
Sbjct 7 QSLYLALYVFYLLLLARLVAGAVVRFSRRWEPNRGTAIALELIFSATDPPLKGLRRLIPP 66
Query 66 LTIGAVRFDLSIMVLLLVAFI 86
L +G V DL+ + LLL+ FI
Sbjct 67 LRLGTVALDLAFIALLLIVFI 87
>gi|295394745|ref|ZP_06804960.1| possible integral membrane protein [Brevibacterium mcbrellneri
ATCC 49030]
gi|294972341|gb|EFG48201.1| possible integral membrane protein [Brevibacterium mcbrellneri
ATCC 49030]
Length=99
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/90 (44%), Positives = 63/90 (70%), Gaps = 4/90 (4%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ + QIL + L ++ +LI RV+++ I+ F+RDWRPTGV +V+ E I ++TDPPV+ +R
Sbjct 1 MAIVLQILAWLLSLYVYVLIGRVIIDLIQIFARDWRPTGVVLVLCETIYTLTDPPVQAIR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQL 90
++IP L +G V DL ++L FIG+Q+
Sbjct 61 KVIPPLRLGNVAIDLGFILL----FIGVQM 86
>gi|269127130|ref|YP_003300500.1| hypothetical protein Tcur_2920 [Thermomonospora curvata DSM 43183]
gi|268312088|gb|ACY98462.1| protein of unknown function YGGT [Thermomonospora curvata DSM
43183]
Length=96
Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/81 (49%), Positives = 56/81 (70%), Gaps = 0/81 (0%)
Query 6 QILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLRRLIPQ 65
+L L+IF L LI R+V+E ++SF+R WRP G +V+ E+ ++TDPP+K+LRR IP
Sbjct 6 SVLTTVLWIFLLFLIGRLVLEVLQSFARSWRPRGAVLVVAEVTYTVTDPPLKLLRRFIPP 65
Query 66 LTIGAVRFDLSIMVLLLVAFI 86
+ +G V DLS VL LV +I
Sbjct 66 VRLGNVALDLSFTVLFLVVYI 86
>gi|260906532|ref|ZP_05914854.1| hypothetical protein BlinB_14475 [Brevibacterium linens BL2]
Length=99
Score = 78.6 bits (192), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/103 (41%), Positives = 69/103 (67%), Gaps = 12/103 (11%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ + F ILG AL ++ +L+ARVV++ ++ FSR+W+P G +V+ EI+ ++TDPP+++LR
Sbjct 1 MAIIFYILGTALSLYVYVLLARVVLDLVQVFSREWKPAGFFLVLAEIVYTLTDPPLRLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGMQ--------LAFGAA 95
++IP L +G + DL +VLL IG+Q LA+G A
Sbjct 61 KVIPPLRLGQISLDLGFIVLL----IGIQILASFLRSLAYGVA 99
>gi|152967136|ref|YP_001362920.1| hypothetical protein Krad_3192 [Kineococcus radiotolerans SRS30216]
gi|151361653|gb|ABS04656.1| conserved hypothetical protein [Kineococcus radiotolerans SRS30216]
Length=101
Score = 78.2 bits (191), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 36/88 (41%), Positives = 64/88 (73%), Gaps = 0/88 (0%)
Query 1 LVVFFQILGFALFIFWLLLIARVVVEFIRSFSRDWRPTGVTVVILEIIMSITDPPVKVLR 60
+ V F++ F + IF++ LI R+V++++++ SR+WRP G +V E + ++TDPP+K+LR
Sbjct 1 MAVVFKLAEFVVLIFFICLIGRLVLDWVQALSREWRPRGAVLVGAEAVYTVTDPPLKLLR 60
Query 61 RLIPQLTIGAVRFDLSIMVLLLVAFIGM 88
R++P L +GAV+ DL+ +VL ++ I M
Sbjct 61 RILPPLRLGAVQLDLAFLVLAILCSILM 88
Lambda K H
0.340 0.152 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 131127635258
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40