BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2175c Length=146 Score E Sequences producing significant alignments: (Bits) Value gi|15841665|ref|NP_336702.1| hypothetical protein MT2231 [Mycoba... 293 6e-78 gi|15609312|ref|NP_216691.1| putative regulatory protein [Mycoba... 293 8e-78 gi|31793353|ref|NP_855846.1| putative regulatory protein [Mycoba... 289 8e-77 gi|237823421|pdb|2KFS|A Chain A, Nmr Structure Of Rv2175c 289 1e-76 gi|167967241|ref|ZP_02549518.1| hypothetical protein MtubH3_0407... 268 2e-70 gi|240168234|ref|ZP_04746893.1| hypothetical protein MkanA1_0290... 257 5e-67 gi|118618812|ref|YP_907144.1| regulatory protein [Mycobacterium ... 254 2e-66 gi|41408011|ref|NP_960847.1| hypothetical protein MAP1913c [Myco... 253 5e-66 gi|296166040|ref|ZP_06848489.1| transcriptional regulatory prote... 246 1e-63 gi|254774991|ref|ZP_05216507.1| hypothetical protein MaviaA2_100... 243 7e-63 gi|254819744|ref|ZP_05224745.1| hypothetical protein MintA_07464... 241 3e-62 gi|342859885|ref|ZP_08716538.1| hypothetical protein MCOL_13438 ... 236 7e-61 gi|15827419|ref|NP_301682.1| DNA-binding protein [Mycobacterium ... 228 2e-58 gi|118464929|ref|YP_881523.1| hypothetical protein MAV_2320 [Myc... 228 3e-58 gi|333990367|ref|YP_004522981.1| regulatory protein [Mycobacteri... 213 6e-54 gi|118473118|ref|YP_888519.1| transcriptional regulatory protein... 209 1e-52 gi|120404510|ref|YP_954339.1| hypothetical protein Mvan_3538 [My... 204 3e-51 gi|315443907|ref|YP_004076786.1| hypothetical protein Mspyr1_230... 195 2e-48 gi|108800237|ref|YP_640434.1| hypothetical protein Mmcs_3271 [My... 192 1e-47 gi|126435860|ref|YP_001071551.1| hypothetical protein Mjls_3282 ... 191 4e-47 gi|169629077|ref|YP_001702726.1| hypothetical protein MAB_1990 [... 159 2e-37 gi|145223560|ref|YP_001134238.1| hypothetical protein Mflv_2973 ... 154 4e-36 gi|226307061|ref|YP_002767021.1| hypothetical protein RER_35740 ... 135 2e-30 gi|229490415|ref|ZP_04384256.1| transcriptional regulatory prote... 133 8e-30 gi|226360252|ref|YP_002778030.1| hypothetical protein ROP_08380 ... 123 7e-27 gi|111018123|ref|YP_701095.1| hypothetical protein RHA1_ro01110 ... 123 1e-26 gi|312140164|ref|YP_004007500.1| hypothetical protein REQ_28020 ... 117 8e-25 gi|319949924|ref|ZP_08023923.1| hypothetical protein ES5_10492 [... 115 3e-24 gi|227488514|ref|ZP_03918830.1| regulatory protein [Corynebacter... 114 5e-24 gi|213965222|ref|ZP_03393419.1| transcriptional regulatory prote... 113 1e-23 gi|54023702|ref|YP_117944.1| hypothetical protein nfa17340 [Noca... 109 1e-22 gi|340525646|gb|AEK40851.1| hypothetical protein RAM_11805 [Amyc... 107 5e-22 gi|325676954|ref|ZP_08156626.1| transcriptional regulatory prote... 107 6e-22 gi|302525462|ref|ZP_07277804.1| transcriptional regulatory prote... 107 8e-22 gi|25028625|ref|NP_738679.1| putative transcription regulator [C... 104 4e-21 gi|296140364|ref|YP_003647607.1| hypothetical protein Tpau_2668 ... 102 2e-20 gi|331696594|ref|YP_004332833.1| transcriptional regulatory prot... 100 5e-20 gi|38234189|ref|NP_939956.1| hypothetical protein DIP1614 [Coryn... 98.2 3e-19 gi|326382540|ref|ZP_08204231.1| hypothetical protein SCNU_06360 ... 97.1 8e-19 gi|256375535|ref|YP_003099195.1| hypothetical protein Amir_1397 ... 96.3 1e-18 gi|227548898|ref|ZP_03978947.1| transcriptional regulatory prote... 95.5 2e-18 gi|19553376|ref|NP_601378.1| hypothetical protein NCgl2094 [Cory... 95.5 2e-18 gi|134098293|ref|YP_001103954.1| transcriptional regulatory prot... 95.1 3e-18 gi|337291137|ref|YP_004630158.1| hypothetical protein CULC22_015... 94.7 4e-18 gi|334563538|ref|ZP_08516529.1| hypothetical protein CbovD2_0311... 93.6 8e-18 gi|172040902|ref|YP_001800616.1| hypothetical protein cur_1222 [... 93.2 1e-17 gi|225021906|ref|ZP_03711098.1| hypothetical protein CORMATOL_01... 92.8 2e-17 gi|262202927|ref|YP_003274135.1| hypothetical protein Gbro_3035 ... 92.8 2e-17 gi|302206537|gb|ADL10879.1| Transcription regulator [Corynebacte... 92.4 2e-17 gi|297161265|gb|ADI10977.1| transcriptional regulatory protein [... 92.4 2e-17 >gi|15841665|ref|NP_336702.1| hypothetical protein MT2231 [Mycobacterium tuberculosis CDC1551] gi|254232329|ref|ZP_04925656.1| conserved hypothetical regulatory protein [Mycobacterium tuberculosis C] gi|13881918|gb|AAK46516.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551] gi|124601388|gb|EAY60398.1| conserved hypothetical regulatory protein [Mycobacterium tuberculosis C] Length=154 Score = 293 bits (750), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 60 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR Sbjct 9 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 68 Query 61 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 120 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV Sbjct 69 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 128 Query 121 SNARPVDALHAHQAREVVRRAQAMAY 146 SNARPVDALHAHQAREVVRRAQAMAY Sbjct 129 SNARPVDALHAHQAREVVRRAQAMAY 154 >gi|15609312|ref|NP_216691.1| putative regulatory protein [Mycobacterium tuberculosis H37Rv] gi|148661991|ref|YP_001283514.1| hypothetical protein MRA_2190 [Mycobacterium tuberculosis H37Ra] gi|148823382|ref|YP_001288136.1| putative regulatory protein [Mycobacterium tuberculosis F11] 32 more sequence titles Length=146 Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 146/146 (100%), Positives = 146/146 (100%), Gaps = 0/146 (0%) Query 1 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 60 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR Sbjct 1 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 60 Query 61 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 120 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV Sbjct 61 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 120 Query 121 SNARPVDALHAHQAREVVRRAQAMAY 146 SNARPVDALHAHQAREVVRRAQAMAY Sbjct 121 SNARPVDALHAHQAREVVRRAQAMAY 146 >gi|31793353|ref|NP_855846.1| putative regulatory protein [Mycobacterium bovis AF2122/97] gi|121638055|ref|YP_978279.1| regulatory protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990549|ref|YP_002645236.1| hypothetical regulatory protein [Mycobacterium bovis BCG str. Tokyo 172] 8 more sequence titles Length=146 Score = 289 bits (740), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 145/146 (99%), Positives = 145/146 (99%), Gaps = 0/146 (0%) Query 1 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 60 MPGRAPGSTLARVGSI AGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR Sbjct 1 MPGRAPGSTLARVGSILAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 60 Query 61 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 120 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV Sbjct 61 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 120 Query 121 SNARPVDALHAHQAREVVRRAQAMAY 146 SNARPVDALHAHQAREVVRRAQAMAY Sbjct 121 SNARPVDALHAHQAREVVRRAQAMAY 146 >gi|237823421|pdb|2KFS|A Chain A, Nmr Structure Of Rv2175c Length=148 Score = 289 bits (739), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/145 (100%), Positives = 145/145 (100%), Gaps = 0/145 (0%) Query 1 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 60 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR Sbjct 3 MPGRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRR 62 Query 61 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 120 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV Sbjct 63 AGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAV 122 Query 121 SNARPVDALHAHQAREVVRRAQAMA 145 SNARPVDALHAHQAREVVRRAQAMA Sbjct 123 SNARPVDALHAHQAREVVRRAQAMA 147 >gi|167967241|ref|ZP_02549518.1| hypothetical protein MtubH3_04077 [Mycobacterium tuberculosis H37Ra] gi|254551212|ref|ZP_05141659.1| hypothetical protein Mtube_12233 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|294993560|ref|ZP_06799251.1| hypothetical protein Mtub2_03384 [Mycobacterium tuberculosis 210] 30 more sequence titles Length=134 Score = 268 bits (685), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 133/134 (99%), Positives = 134/134 (100%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 +GSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT Sbjct 1 MGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH Sbjct 61 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|240168234|ref|ZP_04746893.1| hypothetical protein MkanA1_02907 [Mycobacterium kansasii ATCC 12478] Length=134 Score = 257 bits (656), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 126/134 (95%), Positives = 130/134 (98%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 +GSIPAGDDVLDP EPTYDL RVAELLGVP+SKV QQLREGHLVAVRRAGGVV+PQVFFT Sbjct 1 MGSIPAGDDVLDPSEPTYDLSRVAELLGVPISKVHQQLREGHLVAVRRAGGVVVPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 NSGQVVKSLPGLLTILHDGGYRDTEI+RWLFTPDPSLTITRDGSRD VSNARPVDALHAH Sbjct 61 NSGQVVKSLPGLLTILHDGGYRDTEIVRWLFTPDPSLTITRDGSRDVVSNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|118618812|ref|YP_907144.1| regulatory protein [Mycobacterium ulcerans Agy99] gi|183983200|ref|YP_001851491.1| regulatory protein [Mycobacterium marinum M] gi|118570922|gb|ABL05673.1| conserved regulatory protein [Mycobacterium ulcerans Agy99] gi|183176526|gb|ACC41636.1| conserved regulatory protein [Mycobacterium marinum M] Length=134 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 125/134 (94%), Positives = 130/134 (98%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 +GSIPAGDDVLDPDEPTYDL RVAELLGVPVSKV QQLREGHLVAVRR GGVV+PQVFFT Sbjct 1 MGSIPAGDDVLDPDEPTYDLSRVAELLGVPVSKVHQQLREGHLVAVRREGGVVVPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 +SGQVVKSLPGLLTILHDGGY DTEI+RWLFTPDPSLT+TRDGSRDAVSNARPVDALHAH Sbjct 61 SSGQVVKSLPGLLTILHDGGYHDTEIIRWLFTPDPSLTVTRDGSRDAVSNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|41408011|ref|NP_960847.1| hypothetical protein MAP1913c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396366|gb|AAS04230.1| hypothetical protein MAP_1913c [Mycobacterium avium subsp. paratuberculosis K-10] Length=154 Score = 253 bits (647), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 125/143 (88%), Positives = 132/143 (93%), Gaps = 0/143 (0%) Query 4 RAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGG 63 RA TLARV SIPAGDDVLDPDEP YDLPRVAELLGVPV+KV QQLREGHLVAVRR Sbjct 12 RASTPTLARVSSIPAGDDVLDPDEPIYDLPRVAELLGVPVTKVHQQLREGHLVAVRRGEA 71 Query 64 VVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNA 123 +V+PQVFFT SG+VVKSLPGLLTILHDGGYRDTEI+RWLFT DPSLT+TRDGSRDA+SNA Sbjct 72 LVVPQVFFTKSGEVVKSLPGLLTILHDGGYRDTEIVRWLFTRDPSLTVTRDGSRDAISNA 131 Query 124 RPVDALHAHQAREVVRRAQAMAY 146 RPVDALHAHQAREVVRRAQAMAY Sbjct 132 RPVDALHAHQAREVVRRAQAMAY 154 >gi|296166040|ref|ZP_06848489.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898605|gb|EFG78162.1| transcriptional regulatory protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=134 Score = 246 bits (627), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 119/134 (89%), Positives = 127/134 (95%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPAGDDVLDPDEPTYDLPRVAELL + VSKV QQLREGHLVAV+R GG+V+PQVFFT Sbjct 1 MSSIPAGDDVLDPDEPTYDLPRVAELLRISVSKVQQQLREGHLVAVKRDGGLVVPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 SG+VVKSLPGLLTILHDGGYRDTEI+RWLFTPDPSLTIT DGSRDA+SNARPVDALHAH Sbjct 61 KSGEVVKSLPGLLTILHDGGYRDTEIVRWLFTPDPSLTITHDGSRDAISNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|254774991|ref|ZP_05216507.1| hypothetical protein MaviaA2_10004 [Mycobacterium avium subsp. avium ATCC 25291] Length=134 Score = 243 bits (620), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 118/134 (89%), Positives = 126/134 (95%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPAGDDVLDPDEP YDLPRVAELLGVPV+KV QQLREGHLVAVRR +V+PQVFFT Sbjct 1 MSSIPAGDDVLDPDEPIYDLPRVAELLGVPVTKVHQQLREGHLVAVRRGEALVVPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 SG+VVKSLPGLLTILHDGGYRDTEI+RWLFT DPSLT+TRDGSRDA+SNARPVDALHAH Sbjct 61 KSGEVVKSLPGLLTILHDGGYRDTEIVRWLFTRDPSLTVTRDGSRDAISNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|254819744|ref|ZP_05224745.1| hypothetical protein MintA_07464 [Mycobacterium intracellulare ATCC 13950] Length=134 Score = 241 bits (614), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 115/134 (86%), Positives = 126/134 (95%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPAGDDVLDPDEP YDLPRVAELL +PV+KV QQLR+GHLVAVRR GVV+PQVFFT Sbjct 1 MSSIPAGDDVLDPDEPIYDLPRVAELLKIPVTKVHQQLRDGHLVAVRRGEGVVVPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 SG+VVKSLPGLLTILHDGGY DTEI+RWLFTPDPSLT+TRDG++DA+SNARPVDALHAH Sbjct 61 QSGEVVKSLPGLLTILHDGGYHDTEIVRWLFTPDPSLTVTRDGTKDAISNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|342859885|ref|ZP_08716538.1| hypothetical protein MCOL_13438 [Mycobacterium colombiense CECT 3035] gi|342133017|gb|EGT86237.1| hypothetical protein MCOL_13438 [Mycobacterium colombiense CECT 3035] Length=134 Score = 236 bits (602), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 114/134 (86%), Positives = 125/134 (94%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPAGDDVL+PDEP YDL RVAEL+GVPV+KV QQLREGHLVAVRR G+V+PQVFFT Sbjct 1 MSSIPAGDDVLEPDEPIYDLKRVAELMGVPVTKVHQQLREGHLVAVRRDEGLVVPQVFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 SG+VVKSLPGLLTILHDGGY DTEI+RWLFT DPSLT+TRDGSRDA++NARPVDALHAH Sbjct 61 KSGEVVKSLPGLLTILHDGGYHDTEIVRWLFTRDPSLTVTRDGSRDALNNARPVDALHAH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|15827419|ref|NP_301682.1| DNA-binding protein [Mycobacterium leprae TN] gi|221229896|ref|YP_002503312.1| putative DNA-binding protein [Mycobacterium leprae Br4923] gi|3080488|emb|CAA18684.1| putative transcriptional regulator [Mycobacterium leprae] gi|13092969|emb|CAC31279.1| putative DNA-binding protein [Mycobacterium leprae] gi|219933003|emb|CAR70993.1| putative DNA-binding protein [Mycobacterium leprae Br4923] Length=134 Score = 228 bits (581), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 109/134 (82%), Positives = 123/134 (92%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 +GSIPAGDDVLDPDEPTYDL +VAELLG+PVS+V ++L EG+LVAVRR +V+PQ+FFT Sbjct 1 MGSIPAGDDVLDPDEPTYDLTQVAELLGIPVSRVHRKLCEGYLVAVRRGDSLVVPQIFFT 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 NSG VVKSLPGLLTILHDG + +TEI+RWLFTPDPSLT+TRDGSRD VSNARPVDALH H Sbjct 61 NSGAVVKSLPGLLTILHDGSFHETEIVRWLFTPDPSLTLTRDGSRDVVSNARPVDALHTH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|118464929|ref|YP_881523.1| hypothetical protein MAV_2320 [Mycobacterium avium 104] gi|118166216|gb|ABK67113.1| conserved hypothetical protein [Mycobacterium avium 104] gi|336461959|gb|EGO40811.1| hypothetical protein MAPs_25670 [Mycobacterium avium subsp. paratuberculosis S397] Length=125 Score = 228 bits (581), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 110/125 (88%), Positives = 118/125 (95%), Gaps = 0/125 (0%) Query 22 VLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSL 81 +LDPDEP YDLPRVAELLGVPV+KV QQLREGHLVAVRR +V+PQVFFT SG+VVKSL Sbjct 1 MLDPDEPIYDLPRVAELLGVPVTKVHQQLREGHLVAVRRGEALVVPQVFFTKSGEVVKSL 60 Query 82 PGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRA 141 PGLLTILHDGGYRDTEI+RWLFT DPSLT+TRDGSRDA+SNARPVDALHAHQAREVVRRA Sbjct 61 PGLLTILHDGGYRDTEIVRWLFTRDPSLTVTRDGSRDAISNARPVDALHAHQAREVVRRA 120 Query 142 QAMAY 146 QAMAY Sbjct 121 QAMAY 125 >gi|333990367|ref|YP_004522981.1| regulatory protein [Mycobacterium sp. JDM601] gi|333486335|gb|AEF35727.1| regulatory protein [Mycobacterium sp. JDM601] Length=135 Score = 213 bits (543), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 98/134 (74%), Positives = 121/134 (91%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 V SIPA +D+LDPDEP +DLP VAE+LGVPV+KV Q LR+ HL+AVRR G +V+PQVFFT Sbjct 2 VSSIPAAEDILDPDEPMFDLPTVAEMLGVPVTKVHQYLRDNHLLAVRRGGVLVVPQVFFT 61 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 +G+VVKSLPGLL +LHDGGY+ T+I+RWLFT DPSL++TRDG+R++V+NARP+DALHAH Sbjct 62 AAGEVVKSLPGLLAVLHDGGYQQTDIVRWLFTHDPSLSLTRDGARESVANARPIDALHAH 121 Query 133 QAREVVRRAQAMAY 146 QAREV+RRAQAMAY Sbjct 122 QAREVMRRAQAMAY 135 >gi|118473118|ref|YP_888519.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] gi|118174405|gb|ABK75301.1| transcriptional regulatory protein [Mycobacterium smegmatis str. MC2 155] Length=134 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 97/134 (73%), Positives = 116/134 (87%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPA DDVLDPDE YDLP VA++LG+PV+KV QQLR+GHLVAVRR G + +P++FF Sbjct 1 MSSIPAADDVLDPDEAVYDLPTVADILGIPVTKVHQQLRDGHLVAVRRNGVIAVPKIFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 ++G VVKSLPGLL +L DGGYR EI+RWLFTPD SLTITRDGS + ++NARPVDALH+H Sbjct 61 DAGHVVKSLPGLLVVLRDGGYRTNEILRWLFTPDESLTITRDGSTERLTNARPVDALHSH 120 Query 133 QAREVVRRAQAMAY 146 QAREV+RRAQAMAY Sbjct 121 QAREVIRRAQAMAY 134 >gi|120404510|ref|YP_954339.1| hypothetical protein Mvan_3538 [Mycobacterium vanbaalenii PYR-1] gi|119957328|gb|ABM14333.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=143 Score = 204 bits (519), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 99/141 (71%), Positives = 115/141 (82%), Gaps = 0/141 (0%) Query 6 PGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVV 65 P L+ + SIP +DVL+ DE YDLP VA LLG+PV+KV QQLREGHLVAVRR G +V Sbjct 3 PSPRLSAMSSIPTSEDVLESDEAVYDLPTVARLLGMPVTKVHQQLREGHLVAVRRGGTIV 62 Query 66 IPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARP 125 +P+VFF +SG VVKSL GLL +L DGGY +TEI+RWLFTPD SLTI RDGS + +NARP Sbjct 63 VPKVFFDDSGHVVKSLSGLLVVLRDGGYTETEIVRWLFTPDASLTIRRDGSTEGQANARP 122 Query 126 VDALHAHQAREVVRRAQAMAY 146 VDALH+HQAREVVRRAQAMAY Sbjct 123 VDALHSHQAREVVRRAQAMAY 143 >gi|315443907|ref|YP_004076786.1| hypothetical protein Mspyr1_23060 [Mycobacterium sp. Spyr1] gi|315262210|gb|ADT98951.1| hypothetical protein Mspyr1_23060 [Mycobacterium sp. Spyr1] Length=134 Score = 195 bits (496), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 90/134 (68%), Positives = 110/134 (83%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIP +DVLDPDE Y++ V++LLG+P SKV Q LR+GHL+AVRR +V+P+ FF Sbjct 1 MSSIPTAEDVLDPDEAVYEVSEVSKLLGIPASKVHQHLRDGHLIAVRRNRSIVVPKAFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 + G VVKSLPGLL +LHDGGY +TEI+RWLFTPDPSL I RDG+ + +NARPVDALH+H Sbjct 61 DHGHVVKSLPGLLVVLHDGGYTETEIVRWLFTPDPSLAIRRDGAGEEQANARPVDALHSH 120 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQAMAY Sbjct 121 QAREVVRRAQAMAY 134 >gi|108800237|ref|YP_640434.1| hypothetical protein Mmcs_3271 [Mycobacterium sp. MCS] gi|119869365|ref|YP_939317.1| hypothetical protein Mkms_3333 [Mycobacterium sp. KMS] gi|108770656|gb|ABG09378.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119695454|gb|ABL92527.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=134 Score = 192 bits (488), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 91/134 (68%), Positives = 109/134 (82%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPA DDVLDPDEP YDLP VA+LLGV V++V LR+G L+AVRR G V+PQ+FF Sbjct 1 MSSIPAADDVLDPDEPVYDLPTVADLLGVAVTRVHHLLRQGQLLAVRRDGKFVVPQMFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 G V+K LPGLL +L DGGYRD EI+RWLFTPD SL I+RDG+ + + NARPVDALH+H Sbjct 61 RHGHVIKQLPGLLVVLRDGGYRDNEIVRWLFTPDESLVISRDGATEPIPNARPVDALHSH 120 Query 133 QAREVVRRAQAMAY 146 QAREV+RRAQA+AY Sbjct 121 QAREVLRRAQALAY 134 >gi|126435860|ref|YP_001071551.1| hypothetical protein Mjls_3282 [Mycobacterium sp. JLS] gi|126235660|gb|ABN99060.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=134 Score = 191 bits (484), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 90/134 (68%), Positives = 108/134 (81%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + SIPA DDVLDPDEP YDLP VA+LLGV V++V LR+G L+AVRR G V+PQ+FF Sbjct 1 MSSIPAADDVLDPDEPVYDLPTVADLLGVAVTRVHHLLRQGQLLAVRRDGKFVVPQMFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 V+K LPGLL +L DGGYRD EI+RWLFTPD SL I+RDG+ + + NARPVDALH+H Sbjct 61 RHSHVIKQLPGLLVVLRDGGYRDNEIVRWLFTPDESLVISRDGATEPIPNARPVDALHSH 120 Query 133 QAREVVRRAQAMAY 146 QAREV+RRAQA+AY Sbjct 121 QAREVLRRAQALAY 134 >gi|169629077|ref|YP_001702726.1| hypothetical protein MAB_1990 [Mycobacterium abscessus ATCC 19977] gi|169241044|emb|CAM62072.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=134 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/134 (59%), Positives = 98/134 (74%), Gaps = 0/134 (0%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + +IP D LD DEP + L VA L VPVSKV Q LR+G L+AV+R G + +P +FF+ Sbjct 1 MSAIPYVADTLDADEPLFTLKEVAARLRVPVSKVQQYLRDGELIAVKRDGEIKVPVIFFS 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 G VVK L GLL++L DGGY + EI+RWLF D SLT++RDG+ + + ARPVDALH H Sbjct 61 PEGPVVKHLFGLLSVLRDGGYHEPEILRWLFAGDESLTVSRDGTTERIEAARPVDALHGH 120 Query 133 QAREVVRRAQAMAY 146 QAREV+RRAQAMAY Sbjct 121 QAREVLRRAQAMAY 134 >gi|145223560|ref|YP_001134238.1| hypothetical protein Mflv_2973 [Mycobacterium gilvum PYR-GCK] gi|145216046|gb|ABP45450.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=101 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 71/99 (72%), Positives = 84/99 (85%), Gaps = 0/99 (0%) Query 48 QQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDP 107 Q LR+GHL+AVRR +V+P+ FF + G VVKSLPGLL +LHDGGY +TEI+RWLFTPDP Sbjct 3 QHLRDGHLIAVRRNRSIVVPKAFFDDHGHVVKSLPGLLVVLHDGGYTETEIVRWLFTPDP 62 Query 108 SLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMAY 146 SL I RDG+ + +NARPVDALH+HQAREVVRRAQAMAY Sbjct 63 SLAIRRDGAGEEQANARPVDALHSHQAREVVRRAQAMAY 101 >gi|226307061|ref|YP_002767021.1| hypothetical protein RER_35740 [Rhodococcus erythropolis PR4] gi|226186178|dbj|BAH34282.1| hypothetical protein RER_35740 [Rhodococcus erythropolis PR4] Length=149 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 74/144 (52%), Positives = 91/144 (64%), Gaps = 12/144 (8%) Query 3 GRAPGSTLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAG 62 G A L V +IP DDVLD + L VA+ +G+PVSKV Q LR+ ++AV+R G Sbjct 18 GLAGPDKLLAVSAIPYCDDVLDSSVSLFQLVDVAKNVGLPVSKVHQLLRDHKIIAVKRHG 77 Query 63 GVVIPQVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSN 122 + +P+VFF GQ+VK LPGLL +LHDGGY D EI+RWLF D SL Sbjct 78 VLGVPEVFFGEDGQIVKWLPGLLAVLHDGGYTDIEILRWLFLADDSLP------------ 125 Query 123 ARPVDALHAHQAREVVRRAQAMAY 146 RPVDALH AREV+RRAQAMA+ Sbjct 126 GRPVDALHGDLAREVIRRAQAMAF 149 >gi|229490415|ref|ZP_04384256.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] gi|229322705|gb|EEN88485.1| transcriptional regulatory protein [Rhodococcus erythropolis SK121] Length=122 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 70/134 (53%), Positives = 88/134 (66%), Gaps = 12/134 (8%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + +IP DDVLD + L VA+ +G+PVSKV Q LR+ ++AV+R G + +P+VFF Sbjct 1 MSAIPYCDDVLDSSVSLFQLVDVAKNVGLPVSKVHQLLRDHKIIAVKRHGVLGVPEVFFG 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 GQ+VK LPGLL +LHDGGY D EI+RWLF D SL RPVDALH Sbjct 61 EDGQIVKWLPGLLAVLHDGGYTDVEILRWLFLADDSLP------------GRPVDALHGD 108 Query 133 QAREVVRRAQAMAY 146 AREV+RRAQAMA+ Sbjct 109 LAREVIRRAQAMAF 122 >gi|226360252|ref|YP_002778030.1| hypothetical protein ROP_08380 [Rhodococcus opacus B4] gi|226238737|dbj|BAH49085.1| hypothetical protein [Rhodococcus opacus B4] Length=122 Score = 123 bits (309), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 66/134 (50%), Positives = 86/134 (65%), Gaps = 12/134 (8%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + +IP DDVLDP L VA+ LGV V++V Q LR+ L+AVRR G + +P++FF Sbjct 1 MSAIPYCDDVLDPSVSLLQLVDVAKNLGVAVTRVQQLLRDQQLIAVRRDGVLGVPELFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 +G+ VK LPGL+ +LHDGG++D EI+ WLF D SL T PV ALH H Sbjct 61 ETGEPVKWLPGLIAVLHDGGFKDEEILLWLFREDDSLPGT------------PVQALHGH 108 Query 133 QAREVVRRAQAMAY 146 AREV+RRAQAM + Sbjct 109 LAREVIRRAQAMGF 122 >gi|111018123|ref|YP_701095.1| hypothetical protein RHA1_ro01110 [Rhodococcus jostii RHA1] gi|110817653|gb|ABG92937.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=122 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 65/134 (49%), Positives = 86/134 (65%), Gaps = 12/134 (8%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + +IP DDVLDP L VA+ LGV V++V Q LR+ L+AVRR G + +P++FF Sbjct 1 MSAIPYCDDVLDPSVSLLQLVDVAKNLGVAVTRVQQLLRDQQLIAVRRDGVLGVPELFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 +G++VK LPGL+ +LHDGG+ D EI++WLF D SL T PV ALH Sbjct 61 ETGEIVKWLPGLVAVLHDGGFEDEEILQWLFREDDSLPGT------------PVQALHGD 108 Query 133 QAREVVRRAQAMAY 146 AREV+RRAQAM + Sbjct 109 LAREVIRRAQAMGF 122 >gi|312140164|ref|YP_004007500.1| hypothetical protein REQ_28020 [Rhodococcus equi 103S] gi|311889503|emb|CBH48820.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=122 Score = 117 bits (292), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 61/134 (46%), Positives = 84/134 (63%), Gaps = 12/134 (8%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + +IP DDVLD P L V++ +G+ V+ V Q LR+ L+AVRR V +P+ FF Sbjct 1 MSAIPYCDDVLDRSIPLLQLADVSKQMGIVVTHVHQLLRDHKLIAVRRDSVVGVPEAFFG 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 + GQ V+ L GL+ +L DGG+ D EI+RWLFT D SL+ T P++ +H Sbjct 61 DDGQPVRLLSGLIVVLRDGGFDDEEILRWLFTEDESLSAT------------PIETMHTD 108 Query 133 QAREVVRRAQAMAY 146 QAREVVRRAQ+MA+ Sbjct 109 QAREVVRRAQSMAF 122 >gi|319949924|ref|ZP_08023923.1| hypothetical protein ES5_10492 [Dietzia cinnamea P4] gi|319436403|gb|EFV91524.1| hypothetical protein ES5_10492 [Dietzia cinnamea P4] Length=121 Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 71/134 (53%), Positives = 91/134 (68%), Gaps = 13/134 (9%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + ++P DDVL T +LP V+E LG+PV++V LR+G L+AVRRAG VV+P VF Sbjct 1 MSTVPHCDDVLPAGAETINLPEVSERLGIPVTRVHDLLRDGTLLAVRRAGVVVVPAVFLD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 + +VV+ LPGL+ +L DGGYRD EI+RWLFT D SL RP DALH H Sbjct 61 DD-EVVRFLPGLIAVLRDGGYRDEEILRWLFTEDDSLP------------GRPADALHGH 107 Query 133 QAREVVRRAQAMAY 146 +AREV+RRAQAMA+ Sbjct 108 RAREVMRRAQAMAF 121 >gi|227488514|ref|ZP_03918830.1| regulatory protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227543119|ref|ZP_03973168.1| regulatory protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227091408|gb|EEI26720.1| regulatory protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181107|gb|EEI62079.1| regulatory protein [Corynebacterium glucuronolyticum ATCC 51866] Length=145 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 59/134 (45%), Positives = 80/134 (60%), Gaps = 12/134 (8%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 V S+P ++VL EP Y L VA+LL VP S+V Q L++ ++AV+ + IP+ FF Sbjct 24 VSSVPVSENVLPEGEPLYTLDEVADLLNVPFSRVKQLLKDHKVIAVKSGKQLCIPKRFFN 83 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 + K + G +T+L DGGY D EI+R+ FT D +L RPVDA H H Sbjct 84 GDDTLNKHVTGAITVLADGGYNDEEILRYFFTEDETLP------------GRPVDAFHGH 131 Query 133 QAREVVRRAQAMAY 146 AREV+RRAQAMA+ Sbjct 132 LAREVLRRAQAMAF 145 >gi|213965222|ref|ZP_03393419.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] gi|213952074|gb|EEB63459.1| transcriptional regulatory protein [Corynebacterium amycolatum SK46] Length=124 Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 65/136 (48%), Positives = 80/136 (59%), Gaps = 13/136 (9%) Query 10 LARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQV 69 + V IP DVL DEPT LP A+L+GV V+++ L+EG L+AV R G IP Sbjct 1 MTSVRKIPTCHDVLSADEPTLALPDAADLIGVTVTRIHALLQEGRLIAVHRDGIAQIPAR 60 Query 70 FFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDAL 129 FF + +V + +PG L +L DGGY E + WLFT D SL RPVDAL Sbjct 61 FFEDD-EVARFVPGALALLADGGYTREETLEWLFTEDESLP------------GRPVDAL 107 Query 130 HAHQAREVVRRAQAMA 145 H H AREV+RRAQAMA Sbjct 108 HGHLAREVMRRAQAMA 123 >gi|54023702|ref|YP_117944.1| hypothetical protein nfa17340 [Nocardia farcinica IFM 10152] gi|54015210|dbj|BAD56580.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=122 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/134 (45%), Positives = 81/134 (61%), Gaps = 12/134 (8%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 + + P +DVL LP VA+ LG+ V++V Q LR+ L+AVRR G +P+VFF Sbjct 1 MSAFPCSEDVLPASVTLLPLPEVADRLGIVVTRVHQMLRDHQLIAVRRDGVAGVPEVFFD 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 +SG VVKSLPGL+T++ D Y D EI+ W+FT D +L +PV+ALH Sbjct 61 DSGAVVKSLPGLITVMKDAKYTDEEILEWIFTDDETLP------------GKPVEALHGP 108 Query 133 QAREVVRRAQAMAY 146 AREV+RRA A + Sbjct 109 LAREVLRRAAAEPF 122 >gi|340525646|gb|AEK40851.1| hypothetical protein RAM_11805 [Amycolatopsis mediterranei S699] Length=122 Score = 107 bits (267), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 58/131 (45%), Positives = 75/131 (58%), Gaps = 12/131 (9%) Query 16 IPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSG 75 IP +D+LD LP VA +LG +KV Q LR+G L+AVRR G + +P FF G Sbjct 4 IPVAEDILDTAIAVLPLPEVATVLGTSTNKVRQMLRDGQLIAVRRRGELCVPGDFFVKDG 63 Query 76 QVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAR 135 VVK L G +T+L D GY TE++RWLFT D D + + P++AL Sbjct 64 -VVKGLTGTITVLADSGYSRTEMLRWLFTAD-----------DTLPGSTPINALRTSHGT 111 Query 136 EVVRRAQAMAY 146 EV RRAQAMA+ Sbjct 112 EVKRRAQAMAF 122 >gi|325676954|ref|ZP_08156626.1| transcriptional regulatory protein [Rhodococcus equi ATCC 33707] gi|325552254|gb|EGD21944.1| transcriptional regulatory protein [Rhodococcus equi ATCC 33707] Length=113 Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 56/125 (45%), Positives = 78/125 (63%), Gaps = 12/125 (9%) Query 22 VLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSL 81 +LD P L V++ +G+ V+ V Q LR+ L+AVRR V +P+ FF + GQ V+ L Sbjct 1 MLDRSIPLLQLADVSKQMGIVVTHVHQLLRDHKLIAVRRDSVVGVPEAFFGDDGQPVRLL 60 Query 82 PGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRA 141 GL+ +L DGG+ D EI+RWLFT D SL+ T P++ +H QAREVVRRA Sbjct 61 SGLIVVLRDGGFDDEEILRWLFTEDESLSAT------------PIETMHTDQAREVVRRA 108 Query 142 QAMAY 146 Q+MA+ Sbjct 109 QSMAF 113 >gi|302525462|ref|ZP_07277804.1| transcriptional regulatory protein [Streptomyces sp. AA4] gi|302434357|gb|EFL06173.1| transcriptional regulatory protein [Streptomyces sp. AA4] Length=122 Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 58/131 (45%), Positives = 75/131 (58%), Gaps = 12/131 (9%) Query 16 IPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSG 75 IP DD+LD LP VA LGV +KV Q LR+G L+AVRR G + +P FF G Sbjct 4 IPVADDILDAAVAVKPLPEVAAALGVSANKVRQMLRDGELIAVRRDGELCVPGDFFVKDG 63 Query 76 QVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAR 135 +VK L G +T+L D G+ TE++RWLFT D D + + P++AL Sbjct 64 -IVKGLAGTITVLADSGFSRTEMLRWLFTAD-----------DTLPGSTPINALRTSHGT 111 Query 136 EVVRRAQAMAY 146 EV RRAQAMA+ Sbjct 112 EVKRRAQAMAF 122 >gi|25028625|ref|NP_738679.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259507684|ref|ZP_05750584.1| transcriptional regulatory protein [Corynebacterium efficiens YS-314] gi|23493911|dbj|BAC18879.1| putative transcription regulator [Corynebacterium efficiens YS-314] gi|259164731|gb|EEW49285.1| transcriptional regulatory protein [Corynebacterium efficiens YS-314] Length=123 Score = 104 bits (259), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 58/126 (47%), Positives = 77/126 (62%), Gaps = 13/126 (10%) Query 21 DVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT-NSGQVVK 79 DVL DEP LP VA+ LG+ V+KV L + ++AV+R G IP+ FF+ + Sbjct 9 DVLPADEPLLTLPEVADRLGIVVTKVMDLLNDHKVIAVQRDGVRYIPEAFFSRKKDNTNR 68 Query 80 SLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVR 139 +PG++ +L DGGY D EI+ +LFTPD +L RP+DALH H AREV+R Sbjct 69 FIPGVIALLADGGYTDEEILTFLFTPDDTLP------------GRPIDALHGHLAREVMR 116 Query 140 RAQAMA 145 RAQAMA Sbjct 117 RAQAMA 122 >gi|296140364|ref|YP_003647607.1| hypothetical protein Tpau_2668 [Tsukamurella paurometabola DSM 20162] gi|296028498|gb|ADG79268.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=126 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 61/138 (45%), Positives = 79/138 (58%), Gaps = 16/138 (11%) Query 13 VGSIPAGDDVLDPD-EPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFF 71 + SIP D L PD T+ + VA+ LGV SKV Q +R+ L+AVRR G + IPQ+FF Sbjct 1 MSSIPYVSDALLPDGTATFSVASVAQGLGVSASKVLQLVRDHQLLAVRRGGDIHIPQLFF 60 Query 72 ---TNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDA 128 + K GL+ +L DGG+ D EIMRWLF P L DG+ P + Sbjct 61 GEIDGRFSIAKHFTGLIQVLRDGGFEDDEIMRWLFAPFDDL----DGA--------PAEL 108 Query 129 LHAHQAREVVRRAQAMAY 146 LH AREV+RRAQ+MA+ Sbjct 109 LHTDSAREVIRRAQSMAF 126 >gi|331696594|ref|YP_004332833.1| transcriptional regulatory protein [Pseudonocardia dioxanivorans CB1190] gi|326951283|gb|AEA24980.1| transcriptional regulatory protein [Pseudonocardia dioxanivorans CB1190] Length=121 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 62/137 (46%), Positives = 82/137 (60%), Gaps = 16/137 (11%) Query 10 LARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQV 69 ++ V PA VL D T +P VA+LL VPV++V Q +R+GHL+++RR G V+P Sbjct 1 MSEVSGTPA---VLSDDVETMPVPDVAQLLSVPVTRVHQLVRDGHLLSLRRDGVTVVPAD 57 Query 70 FFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDAL 129 F + G VVK L G +T+L DGGY D +I+RWLF D SL T PV AL Sbjct 58 FLAD-GAVVKGLSGTITVLRDGGYADPDILRWLFADDESLPGT------------PVAAL 104 Query 130 HAHQAREVVRRAQAMAY 146 + +EV RRAQAMA+ Sbjct 105 KEGRHKEVKRRAQAMAF 121 >gi|38234189|ref|NP_939956.1| hypothetical protein DIP1614 [Corynebacterium diphtheriae NCTC 13129] gi|38200451|emb|CAE50139.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=122 Score = 98.2 bits (243), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 53/131 (41%), Positives = 75/131 (58%), Gaps = 19/131 (14%) Query 16 IPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSG 75 +PAG+++L +P AE +G PV++V Q+ E L+ V G IP+ F + G Sbjct 11 LPAGENLLT-------VPDYAERIGQPVTRVFDQIGEHKLICVLDNGIKKIPEAFLSEKG 63 Query 76 QVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAR 135 K +PG++ +L DGGY D EI ++LFT D SL RP+DA+H H AR Sbjct 64 TTNKFVPGVIALLSDGGYTDQEIFKFLFTEDESLP------------GRPIDAIHGHLAR 111 Query 136 EVVRRAQAMAY 146 EV+RRAQAM + Sbjct 112 EVMRRAQAMGF 122 >gi|326382540|ref|ZP_08204231.1| hypothetical protein SCNU_06360 [Gordonia neofelifaecis NRRL B-59395] gi|326198659|gb|EGD55842.1| hypothetical protein SCNU_06360 [Gordonia neofelifaecis NRRL B-59395] Length=121 Score = 97.1 bits (240), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 56/134 (42%), Positives = 76/134 (57%), Gaps = 13/134 (9%) Query 13 VGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT 72 +GS+P D+L D P +L + A+ LGV +++ +R+ +L+A R G VIP+ FF Sbjct 1 MGSLPLSIDILPDDVPVLELDQAAKRLGVSGNRLRTLIRDHNLLAASRGGVPVIPEAFFG 60 Query 73 NSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAH 132 + G + K GL+ IL DGGY E M WLF P L + RP DALH H Sbjct 61 DDG-LAKHFEGLVRILLDGGYTRDEAMGWLFEEQPDLGL------------RPADALHTH 107 Query 133 QAREVVRRAQAMAY 146 AREV+RRAQA A+ Sbjct 108 SAREVIRRAQAQAF 121 >gi|256375535|ref|YP_003099195.1| hypothetical protein Amir_1397 [Actinosynnema mirum DSM 43827] gi|255919838|gb|ACU35349.1| hypothetical protein Amir_1397 [Actinosynnema mirum DSM 43827] Length=112 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 57/125 (46%), Positives = 76/125 (61%), Gaps = 13/125 (10%) Query 22 VLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSL 81 +L P+ L VAE LG PV++V Q LR+G L+A RR G +V+P F +G VVK L Sbjct 1 MLAPEIEVLGLAEVAERLGQPVNRVHQLLRDGQLLAERRDGVLVVP-ADFVAAGNVVKGL 59 Query 82 PGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRA 141 PG +T+L D G+ E++RWLFT D +L GS P++AL + REV RRA Sbjct 60 PGTITVLRDSGFSTEEMLRWLFTEDDTLP----GS--------PIEALRGDRGREVKRRA 107 Query 142 QAMAY 146 QAMA+ Sbjct 108 QAMAF 112 >gi|227548898|ref|ZP_03978947.1| transcriptional regulatory protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079026|gb|EEI16989.1| transcriptional regulatory protein [Corynebacterium lipophiloflavum DSM 44291] Length=146 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 54/126 (43%), Positives = 72/126 (58%), Gaps = 12/126 (9%) Query 21 DVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKS 80 D L +E LP VAE LGVPV+KV + L+ R+ G +P+ G++ K Sbjct 33 DGLLANETLLPLPDVAEYLGVPVTKVHDLVGAHKLLVYRKDGVKYVPERLLGEDGELSKF 92 Query 81 LPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRR 140 + G + +LHDGGY EI+ +LFT D SL RP+DALH+H AREV+RR Sbjct 93 VGGAIMVLHDGGYSADEILHYLFTDDESLP------------GRPIDALHSHGAREVIRR 140 Query 141 AQAMAY 146 AQAMA+ Sbjct 141 AQAMAF 146 >gi|19553376|ref|NP_601378.1| hypothetical protein NCgl2094 [Corynebacterium glutamicum ATCC 13032] gi|62391014|ref|YP_226416.1| hypothetical protein cg2386 [Corynebacterium glutamicum ATCC 13032] gi|145296136|ref|YP_001138957.1| hypothetical protein cgR_2056 [Corynebacterium glutamicum R] gi|21324944|dbj|BAB99567.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41326353|emb|CAF20515.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|140846056|dbj|BAF55055.1| hypothetical protein [Corynebacterium glutamicum R] gi|344044844|gb|EGV40519.1| hypothetical protein CgS9114_08046 [Corynebacterium glutamicum S9114] Length=123 Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/122 (44%), Positives = 70/122 (58%), Gaps = 13/122 (10%) Query 26 DEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFF-TNSGQVVKSLPGL 84 +EP LP AE LGV V+KV + E L+ VRR G IP+ F T + +PG+ Sbjct 14 NEPLLTLPETAERLGVVVTKVMDLVNEHKLIVVRRDGIRYIPEAFLSTKKENTNRFIPGV 73 Query 85 LTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAM 144 + +L DGG+ D EI+ +LFT D +L RP+DALH AREV+RRAQAM Sbjct 74 IALLADGGFSDEEILAFLFTEDETLP------------GRPIDALHGQLAREVMRRAQAM 121 Query 145 AY 146 A+ Sbjct 122 AF 123 >gi|134098293|ref|YP_001103954.1| transcriptional regulatory protein [Saccharopolyspora erythraea NRRL 2338] gi|291004287|ref|ZP_06562260.1| transcriptional regulatory protein [Saccharopolyspora erythraea NRRL 2338] gi|133910916|emb|CAM01029.1| transcriptional regulatory protein [Saccharopolyspora erythraea NRRL 2338] Length=107 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 55/115 (48%), Positives = 68/115 (60%), Gaps = 13/115 (11%) Query 32 LPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSLPGLLTILHDG 91 LP VAE LG PV++V Q +R+GHL+AVRR G + +P F VVK L G +T+L D Sbjct 6 LPDVAERLGQPVTRVHQLIRDGHLLAVRRDGVLGVPTAFLAGDA-VVKGLGGTITLLKDN 64 Query 92 GYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMAY 146 GY EI+ WLFT D SL T P+DAL + REV RRAQAM + Sbjct 65 GYNADEILSWLFTADDSLPGT------------PIDALRGDRGREVKRRAQAMGF 107 >gi|337291137|ref|YP_004630158.1| hypothetical protein CULC22_01529 [Corynebacterium ulcerans BR-AD22] gi|334697248|gb|AEG82045.1| hypothetical protein CULC809_01513 [Corynebacterium ulcerans 809] gi|334699443|gb|AEG84239.1| hypothetical protein CULC22_01529 [Corynebacterium ulcerans BR-AD22] Length=117 Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 52/121 (43%), Positives = 70/121 (58%), Gaps = 12/121 (9%) Query 26 DEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSLPGLL 85 +EP +P AE LG+PV++V L E L+ V G IP+ F + G K +PG++ Sbjct 9 NEPLLTVPDYAERLGLPVTRVFDLLGEHKLICVYDDGVRKIPEAFLSVKGTTNKFVPGVI 68 Query 86 TILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMA 145 +L DGG+ D EI ++LFT D +L RPVDALH H AREV+RRAQA A Sbjct 69 ALLSDGGFTDEEIFQYLFTEDDTLP------------GRPVDALHGHLAREVMRRAQAAA 116 Query 146 Y 146 + Sbjct 117 F 117 >gi|334563538|ref|ZP_08516529.1| hypothetical protein CbovD2_03112 [Corynebacterium bovis DSM 20582] Length=150 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 58/131 (45%), Positives = 71/131 (55%), Gaps = 19/131 (14%) Query 22 VLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFT-------NS 74 VL EP +P AE LGV V++V + L+AV G IP F T Sbjct 30 VLPAGEPVLSVPETAERLGVVVTRVMDMVNSHRLIAVEVDGTRRIPARFLTGDPGSEATG 89 Query 75 GQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQA 134 +V + +PGL+ +L DGGY D EI+ +LFT DPSL RPVDALH H A Sbjct 90 AEVNRFVPGLIALLSDGGYTDAEIIDYLFTEDPSLP------------GRPVDALHGHLA 137 Query 135 REVVRRAQAMA 145 REV+RRAQAMA Sbjct 138 REVMRRAQAMA 148 >gi|172040902|ref|YP_001800616.1| hypothetical protein cur_1222 [Corynebacterium urealyticum DSM 7109] gi|171852206|emb|CAQ05182.1| hypothetical protein cu1222 [Corynebacterium urealyticum DSM 7109] Length=211 Score = 93.2 bits (230), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/132 (41%), Positives = 76/132 (58%), Gaps = 19/132 (14%) Query 14 GSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTN 73 G +PAG+++L +P A+ +GV SK+ +++ ++ + G +P FF Sbjct 97 GGLPAGEELLS-------IPEAAQRMGVGQSKILDLVQKKKILDTKIDGVRYLPARFFDE 149 Query 74 SGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQ 133 GQV + LPG++ +L DGGY+ TEI+ +LFT D SL RPVDALH H Sbjct 150 DGQVTRFLPGVVALLLDGGYQPTEILEYLFTEDDSLP------------GRPVDALHGHL 197 Query 134 AREVVRRAQAMA 145 AREV RRAQAMA Sbjct 198 AREVRRRAQAMA 209 >gi|225021906|ref|ZP_03711098.1| hypothetical protein CORMATOL_01938 [Corynebacterium matruchotii ATCC 33806] gi|224945293|gb|EEG26502.1| hypothetical protein CORMATOL_01938 [Corynebacterium matruchotii ATCC 33806] Length=142 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 54/138 (40%), Positives = 74/138 (54%), Gaps = 12/138 (8%) Query 8 STLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIP 67 +TL V + +L PD + L A+ LGV + V + E L+ V + G +P Sbjct 16 ATLRTVSNQSPDASILPPDTLLFTLAEFADQLGVKTTHVRDLIGERKLICVYKNGVRHLP 75 Query 68 QVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVD 127 F T+ G + K +PG++ +L DGGY D EI +LFT DPSL +P+ Sbjct 76 AAFLTDKGTLNKFVPGVIALLIDGGYSDAEIFHYLFTDDPSLP------------GQPIA 123 Query 128 ALHAHQAREVVRRAQAMA 145 ALH H AREV+RRAQAMA Sbjct 124 ALHGHLAREVMRRAQAMA 141 >gi|262202927|ref|YP_003274135.1| hypothetical protein Gbro_3035 [Gordonia bronchialis DSM 43247] gi|262086274|gb|ACY22242.1| hypothetical protein Gbro_3035 [Gordonia bronchialis DSM 43247] Length=132 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/139 (40%), Positives = 73/139 (53%), Gaps = 13/139 (9%) Query 8 STLARVGSIPAGDDVLDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIP 67 +TL V S+P D L D T + VA L V ++V +R+ HL+ V R G +P Sbjct 7 ATLLGVSSLPLSQDTLPSDVDTLSVDEVARRLHVSANRVRNLIRDHHLLGVSRGGEPAVP 66 Query 68 QVFFTNSGQVVKSLPGLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVD 127 +FF + G +VK GL+ +L DGGY E+M WLFT L + P Sbjct 67 ALFFDDLG-IVKHFTGLVEVLLDGGYSRDEVMAWLFTVQDDLGM------------HPAA 113 Query 128 ALHAHQAREVVRRAQAMAY 146 ALH H AREV+RRAQA A+ Sbjct 114 ALHTHSAREVIRRAQAQAF 132 >gi|302206537|gb|ADL10879.1| Transcription regulator [Corynebacterium pseudotuberculosis C231] Length=122 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/124 (42%), Positives = 69/124 (56%), Gaps = 12/124 (9%) Query 23 LDPDEPTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFFTNSGQVVKSLP 82 L +E +P AE +G+PV++V L E L+ V G IP+ F + G K +P Sbjct 11 LPENESLLTVPDYAERVGLPVTRVFDLLGEHKLICVHDNGVRKIPEAFLSVKGTTNKFVP 70 Query 83 GLLTILHDGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQ 142 G++ +L DGG+ D EI +LFT D SL RPVDALH H AREV+RRAQ Sbjct 71 GVIALLSDGGFTDEEIFHYLFTEDESLP------------GRPVDALHGHLAREVMRRAQ 118 Query 143 AMAY 146 A A+ Sbjct 119 AAAF 122 >gi|297161265|gb|ADI10977.1| transcriptional regulatory protein [Streptomyces bingchenggensis BCW-1] Length=121 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 55/116 (48%), Positives = 71/116 (62%), Gaps = 15/116 (12%) Query 32 LPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQV--FFTNSGQVVKSLPGLLTILH 89 +P +AE LGV V++V Q ++EG L+AVRR V+ QV F G+VVK L G LT+L Sbjct 18 VPDIAERLGVEVTRVRQLVKEGQLIAVRRGENRVL-QVPAEFIGDGKVVKGLAGTLTLLR 76 Query 90 DGGYRDTEIMRWLFTPDPSLTITRDGSRDAVSNARPVDALHAHQAREVVRRAQAMA 145 D G+ D E++ WLFTPDPSL T P ALH ++ EV RRAQA+A Sbjct 77 DDGFSDEEMLEWLFTPDPSLPGT------------PAQALHENRGTEVKRRAQALA 120 Lambda K H 0.319 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127605758688 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40