BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2180c Length=295 Score E Sequences producing significant alignments: (Bits) Value gi|15841670|ref|NP_336707.1| hypothetical protein MT2235 [Mycoba... 582 2e-164 gi|308372159|ref|ZP_07427644.2| conserved membrane protein [Myco... 582 3e-164 gi|15609317|ref|NP_216696.1| integral membrane protein [Mycobact... 580 7e-164 gi|298525672|ref|ZP_07013081.1| conserved integral membrane prot... 579 2e-163 gi|31793358|ref|NP_855851.1| integral membrane protein [Mycobact... 578 4e-163 gi|167967127|ref|ZP_02549404.1| conserved integral membrane prot... 493 2e-137 gi|289758301|ref|ZP_06517679.1| integral membrane protein [Mycob... 487 9e-136 gi|339295095|gb|AEJ47206.1| conserved membrane protein [Mycobact... 485 4e-135 gi|296166044|ref|ZP_06848493.1| integral membrane protein [Mycob... 442 3e-122 gi|183983214|ref|YP_001851505.1| hypothetical protein MMAR_3224 ... 435 5e-120 gi|118463447|ref|YP_881518.1| hypothetical protein MAV_2314 [Myc... 423 1e-116 gi|254774986|ref|ZP_05216502.1| hypothetical protein MaviaA2_099... 423 2e-116 gi|342859890|ref|ZP_08716543.1| hypothetical protein MCOL_13463 ... 414 9e-114 gi|254819749|ref|ZP_05224750.1| hypothetical protein MintA_07489... 406 2e-111 gi|240168238|ref|ZP_04746897.1| hypothetical protein MkanA1_0292... 377 9e-103 gi|108800241|ref|YP_640438.1| hypothetical protein Mmcs_3275 [My... 338 8e-91 gi|119869369|ref|YP_939321.1| hypothetical protein Mkms_3337 [My... 337 1e-90 gi|126435864|ref|YP_001071555.1| hypothetical protein Mjls_3286 ... 336 2e-90 gi|41408016|ref|NP_960852.1| hypothetical protein MAP1918c [Myco... 324 1e-86 gi|120404514|ref|YP_954343.1| hypothetical protein Mvan_3542 [My... 323 3e-86 gi|333990363|ref|YP_004522977.1| hypothetical protein JDM601_172... 317 2e-84 gi|118469533|ref|YP_888523.1| integral membrane protein [Mycobac... 297 1e-78 gi|145223556|ref|YP_001134234.1| hypothetical protein Mflv_2969 ... 295 7e-78 gi|336461964|gb|EGO40816.1| hypothetical protein MAPs_25720 [Myc... 253 2e-65 gi|54026119|ref|YP_120361.1| hypothetical protein nfa41480 [Noca... 250 2e-64 gi|226305943|ref|YP_002765903.1| hypothetical protein RER_24560 ... 248 7e-64 gi|229491405|ref|ZP_04385229.1| putative membrane protein [Rhodo... 248 8e-64 gi|325673473|ref|ZP_08153164.1| integral membrane protein [Rhodo... 226 3e-57 gi|312139221|ref|YP_004006557.1| integral membrane protein [Rhod... 226 3e-57 gi|226306719|ref|YP_002766679.1| hypothetical protein RER_32320 ... 214 2e-53 gi|229494896|ref|ZP_04388649.1| putative membrane protein [Rhodo... 213 2e-53 gi|269125530|ref|YP_003298900.1| hypothetical protein Tcur_1279 ... 204 1e-50 gi|226366002|ref|YP_002783785.1| hypothetical protein ROP_65930 ... 201 1e-49 gi|111023500|ref|YP_706472.1| hypothetical protein RHA1_ro06541 ... 201 2e-49 gi|333918725|ref|YP_004492306.1| hypothetical protein AS9A_1054 ... 198 7e-49 gi|271969010|ref|YP_003343206.1| hypothetical protein Sros_7797 ... 195 7e-48 gi|271963300|ref|YP_003337496.1| hypothetical protein Sros_1762 ... 184 2e-44 gi|72160678|ref|YP_288335.1| hypothetical protein Tfu_0274 [Ther... 182 4e-44 gi|336461902|gb|EGO40755.1| hypothetical protein MAPs_25730 [Myc... 172 8e-41 gi|118618823|ref|YP_907155.1| hypothetical protein MUL_3535 [Myc... 164 1e-38 gi|333027704|ref|ZP_08455768.1| putative integral membrane prote... 162 6e-38 gi|296139346|ref|YP_003646589.1| hypothetical protein Tpau_1629 ... 160 2e-37 gi|311896910|dbj|BAJ29318.1| hypothetical protein KSE_35110 [Kit... 159 7e-37 gi|29832569|ref|NP_827203.1| integral membrane protein [Streptom... 154 1e-35 gi|302538380|ref|ZP_07290722.1| integral membrane protein [Strep... 153 3e-35 gi|256375183|ref|YP_003098843.1| hypothetical protein Amir_1041 ... 152 5e-35 gi|337765521|emb|CCB74230.1| Integral membrane protein (modular ... 152 9e-35 gi|158317374|ref|YP_001509882.1| hypothetical protein Franean1_5... 145 9e-33 gi|312195855|ref|YP_004015916.1| hypothetical protein FraEuI1c_1... 144 2e-32 gi|297199156|ref|ZP_06916553.1| integral membrane protein [Strep... 144 2e-32 >gi|15841670|ref|NP_336707.1| hypothetical protein MT2235 [Mycobacterium tuberculosis CDC1551] gi|148823387|ref|YP_001288141.1| integral membrane protein [Mycobacterium tuberculosis F11] gi|253798756|ref|YP_003031757.1| hypothetical protein TBMG_01801 [Mycobacterium tuberculosis KZN 1435] 25 more sequence titles Length=312 Score = 582 bits (1501), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 295/295 (100%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 18 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 77 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 78 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 137 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 138 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 197 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 198 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 257 Query 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD Sbjct 258 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 312 >gi|308372159|ref|ZP_07427644.2| conserved membrane protein [Mycobacterium tuberculosis SUMu004] gi|308334014|gb|EFP22865.1| conserved membrane protein [Mycobacterium tuberculosis SUMu004] Length=311 Score = 582 bits (1499), Expect = 3e-164, Method: Compositional matrix adjust. Identities = 295/295 (100%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 17 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 76 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 77 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 136 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 137 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 196 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 197 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 256 Query 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD Sbjct 257 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 311 >gi|15609317|ref|NP_216696.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|148661996|ref|YP_001283519.1| putative integral membrane protein [Mycobacterium tuberculosis H37Ra] gi|254551217|ref|ZP_05141664.1| hypothetical protein Mtube_12258 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] 34 more sequence titles Length=295 Score = 580 bits (1496), Expect = 7e-164, Method: Compositional matrix adjust. Identities = 294/295 (99%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 +EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 1 MEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 Query 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD Sbjct 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 >gi|298525672|ref|ZP_07013081.1| conserved integral membrane protein [Mycobacterium tuberculosis 94_M4241A] gi|298495466|gb|EFI30760.1| conserved integral membrane protein [Mycobacterium tuberculosis 94_M4241A] Length=295 Score = 579 bits (1493), Expect = 2e-163, Method: Compositional matrix adjust. Identities = 293/295 (99%), Positives = 295/295 (100%), Gaps = 0/295 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 +EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 1 MEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 Query 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQ+VRPAPPPERTAPILISGSVWSD Sbjct 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQNVRPAPPPERTAPILISGSVWSD 295 >gi|31793358|ref|NP_855851.1| integral membrane protein [Mycobacterium bovis AF2122/97] gi|121638060|ref|YP_978284.1| putative integral membrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990554|ref|YP_002645241.1| putative integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|31618950|emb|CAD97055.1| Probable conserved integral membrane protein [Mycobacterium bovis AF2122/97] gi|121493708|emb|CAL72183.1| Probable conserved integral membrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773667|dbj|BAH26473.1| putative integral membrane protein [Mycobacterium bovis BCG str. Tokyo 172] gi|341602098|emb|CCC64772.1| probable conserved integral membrane protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=295 Score = 578 bits (1489), Expect = 4e-163, Method: Compositional matrix adjust. Identities = 293/295 (99%), Positives = 294/295 (99%), Gaps = 0/295 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 +EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 1 MEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFL VRQGANWVVLQTTLIAGLVLTLPL Sbjct 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLTVRQGANWVVLQTTLIAGLVLTLPL 180 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 Query 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD Sbjct 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGSVWSD 295 >gi|167967127|ref|ZP_02549404.1| conserved integral membrane protein [Mycobacterium tuberculosis H37Ra] Length=268 Score = 493 bits (1269), Expect = 2e-137, Method: Compositional matrix adjust. Identities = 251/251 (100%), Positives = 251/251 (100%), Gaps = 0/251 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 18 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 77 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 78 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 137 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 138 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 197 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 198 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 257 Query 241 RPVVRIKLWLQ 251 RPVVRIKLWLQ Sbjct 258 RPVVRIKLWLQ 268 >gi|289758301|ref|ZP_06517679.1| integral membrane protein [Mycobacterium tuberculosis T85] gi|289713865|gb|EFD77877.1| integral membrane protein [Mycobacterium tuberculosis T85] Length=265 Score = 487 bits (1253), Expect = 9e-136, Method: Compositional matrix adjust. Identities = 248/248 (100%), Positives = 248/248 (100%), Gaps = 0/248 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 18 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 77 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 78 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 137 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 138 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 197 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 198 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 257 Query 241 RPVVRIKL 248 RPVVRIKL Sbjct 258 RPVVRIKL 265 >gi|339295095|gb|AEJ47206.1| conserved membrane protein [Mycobacterium tuberculosis CCDC5079] gi|339298716|gb|AEJ50826.1| conserved membrane protein [Mycobacterium tuberculosis CCDC5180] Length=248 Score = 485 bits (1248), Expect = 4e-135, Method: Compositional matrix adjust. Identities = 247/248 (99%), Positives = 248/248 (100%), Gaps = 0/248 (0%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 +EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI Sbjct 1 MEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD Sbjct 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 Query 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL Sbjct 121 VYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL 180 Query 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR Sbjct 181 AVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWR 240 Query 241 RPVVRIKL 248 RPVVRIKL Sbjct 241 RPVVRIKL 248 >gi|296166044|ref|ZP_06848493.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898609|gb|EFG78166.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=294 Score = 442 bits (1137), Expect = 3e-122, Method: Compositional matrix adjust. Identities = 223/288 (78%), Positives = 248/288 (87%), Gaps = 2/288 (0%) Query 2 EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIG 61 V W HDI+ GRLPLLCCL+AF+LTF VTR+FVRFI RA GRPARWW PRNVH+G Sbjct 8 RVTRWFAHDILGGGRLPLLCCLLAFILTFFVTRTFVRFIRHRAETGRPARWWHPRNVHVG 67 Query 62 SVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDV 121 VHIHHV FGVVLV++SGLTLVTLS+DG EPEFT++A FG+GAALVLDEYALILHLSDV Sbjct 68 GVHIHHVTFGVVLVLLSGLTLVTLSIDGHEPEFTLSAIFFGIGAALVLDEYALILHLSDV 127 Query 122 YWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLA 181 YWEEDGRTSVDAVFAAV VAGLLIMGLHPL+FFLP+ +GA+ L+ + LVLTLPLA Sbjct 128 YWEEDGRTSVDAVFAAVGVAGLLIMGLHPLMFFLPIWEGADSWPLRAAVAGALVLTLPLA 187 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 VVV+LKGKVWTGLLGMF+VVLLV+GAVRLSRPHAPWARWRYT P+KMRRALQRERT RR Sbjct 188 VVVVLKGKVWTGLLGMFIVVLLVIGAVRLSRPHAPWARWRYTTQPDKMRRALQRERTLRR 247 Query 242 PVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 PVVR KL+LQ IAGTPR+PD+R VDAQLD +V PAPPP T PILIS Sbjct 248 PVVRAKLYLQCAIAGTPRLPDDRTVDAQLDHEVHPAPPP--TGPILIS 293 >gi|183983214|ref|YP_001851505.1| hypothetical protein MMAR_3224 [Mycobacterium marinum M] gi|183176540|gb|ACC41650.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length=288 Score = 435 bits (1118), Expect = 5e-120, Method: Compositional matrix adjust. Identities = 225/287 (79%), Positives = 254/287 (89%), Gaps = 0/287 (0%) Query 3 VFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGS 62 +F+WLQHDIVDRGRLPLLCCLVAF+LTF VTR+FVR I R G P RWWQPRNVH+GS Sbjct 1 MFYWLQHDIVDRGRLPLLCCLVAFILTFFVTRTFVRVIRGRPDGGPPPRWWQPRNVHLGS 60 Query 63 VHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVY 122 VH+HHV FGVVLVMISGLTLVTL+V+GREPE ++AA+ FG+GAALVLDEYALILHLSDVY Sbjct 61 VHVHHVTFGVVLVMISGLTLVTLAVNGREPELSVAATFFGIGAALVLDEYALILHLSDVY 120 Query 123 WEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAV 182 WEEDGRTSVDAVFAAVAVAGLL +GLHPL+FF + G++ V+ + ++ GLVLTLPLA Sbjct 121 WEEDGRTSVDAVFAAVAVAGLLTLGLHPLMFFPTIWSGSDSVLPRAVVVGGLVLTLPLAT 180 Query 183 VVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRP 242 VVL+KGKVWTGLLGMF+VVLLV+GA+RLSRPHAPWARWRYT P+KMRRALQRERT RRP Sbjct 181 VVLIKGKVWTGLLGMFIVVLLVIGAIRLSRPHAPWARWRYTAKPDKMRRALQRERTLRRP 240 Query 243 VVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 VVR KLWLQ IAGTPR+PDERAV+AQLD+DV PAPPPE T PIL S Sbjct 241 VVRAKLWLQCAIAGTPRLPDERAVEAQLDRDVHPAPPPEGTEPILTS 287 >gi|118463447|ref|YP_881518.1| hypothetical protein MAV_2314 [Mycobacterium avium 104] gi|118164734|gb|ABK65631.1| conserved hypothetical protein [Mycobacterium avium 104] Length=289 Score = 423 bits (1088), Expect = 1e-116, Method: Compositional matrix adjust. Identities = 221/288 (77%), Positives = 245/288 (86%), Gaps = 2/288 (0%) Query 2 EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIG 61 EV W HD+ DRG LPLLCCLVAF+LTF VTRSFVRFI RA GRPARWW PRNVH+G Sbjct 3 EVTRWFAHDVYDRGHLPLLCCLVAFILTFFVTRSFVRFIRHRAETGRPARWWHPRNVHVG 62 Query 62 SVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDV 121 VHIHHV FGVVL ++SGLTLVTLS++G EPEFT+AA+ FG+GAALVLDEYALILHLSDV Sbjct 63 GVHIHHVTFGVVLTLLSGLTLVTLSINGHEPEFTVAATFFGIGAALVLDEYALILHLSDV 122 Query 122 YWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLA 181 YW EDGRTSVDAVFAAVAV GLLIMGLHPL+FFLP+ GA+ ++L+ + +VLTLPLA Sbjct 123 YWSEDGRTSVDAVFAAVAVGGLLIMGLHPLMFFLPMWHGADSMMLRALVGGAMVLTLPLA 182 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 VVV+LKGKVWTGLLGMF+VVLLV+GAVRLSRPHAPWARWRY+ PEKMRRALQRERT RR Sbjct 183 VVVVLKGKVWTGLLGMFLVVLLVIGAVRLSRPHAPWARWRYSTQPEKMRRALQRERTLRR 242 Query 242 PVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 PVVR KL+LQ IAGTPR PDER VDA LD +V PAP P T PILI Sbjct 243 PVVRAKLYLQCAIAGTPRFPDERTVDATLDHEVHPAPAP--TGPILIG 288 >gi|254774986|ref|ZP_05216502.1| hypothetical protein MaviaA2_09979 [Mycobacterium avium subsp. avium ATCC 25291] Length=294 Score = 423 bits (1088), Expect = 2e-116, Method: Compositional matrix adjust. Identities = 220/288 (77%), Positives = 245/288 (86%), Gaps = 2/288 (0%) Query 2 EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIG 61 EV W HD+ DRG LPLLCCLVAF+LTF VTRSFVRFI RA GRPARWW PRNVH+G Sbjct 8 EVTRWFAHDVYDRGHLPLLCCLVAFILTFFVTRSFVRFIRHRAETGRPARWWHPRNVHVG 67 Query 62 SVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDV 121 VHIHHV FGVVL ++SGLTLVTLS++G EPEFT+AA+ FG+GAALVLDEYALILHLSDV Sbjct 68 GVHIHHVTFGVVLTLLSGLTLVTLSINGHEPEFTVAATFFGIGAALVLDEYALILHLSDV 127 Query 122 YWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLA 181 YW EDGRTSVDAVFAAVAV GLLIMGLHPL+FFLP+ GA+ ++L+ + +VLTLPLA Sbjct 128 YWSEDGRTSVDAVFAAVAVGGLLIMGLHPLMFFLPMWHGADSMMLRALVGGAMVLTLPLA 187 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 VVV+LKGK+WTGLLGMF+VVLLV+GAVRLSRPHAPWARWRY+ PEKMRRALQRERT RR Sbjct 188 VVVVLKGKMWTGLLGMFLVVLLVIGAVRLSRPHAPWARWRYSTQPEKMRRALQRERTLRR 247 Query 242 PVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 PVVR KL+LQ IAGTPR PDER VDA LD +V PAP P T PILI Sbjct 248 PVVRAKLYLQCAIAGTPRFPDERTVDATLDHEVHPAPAP--TGPILIG 293 >gi|342859890|ref|ZP_08716543.1| hypothetical protein MCOL_13463 [Mycobacterium colombiense CECT 3035] gi|342133022|gb|EGT86242.1| hypothetical protein MCOL_13463 [Mycobacterium colombiense CECT 3035] Length=294 Score = 414 bits (1064), Expect = 9e-114, Method: Compositional matrix adjust. Identities = 215/288 (75%), Positives = 240/288 (84%), Gaps = 2/288 (0%) Query 2 EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIG 61 EV W HDI D G LPLLCCLVAF+LTF VTR+FVRFI RA GR ARWW PRNVH+G Sbjct 8 EVTRWFAHDIHDSGHLPLLCCLVAFILTFFVTRTFVRFIRHRAETGRRARWWHPRNVHVG 67 Query 62 SVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDV 121 VHIHHV FGVVL ++SGLTLVTLS+DG EPEF I A++FG+GAALVLDEYALILHLSDV Sbjct 68 GVHIHHVTFGVVLTLLSGLTLVTLSIDGNEPEFIITATLFGIGAALVLDEYALILHLSDV 127 Query 122 YWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLA 181 YW EDGRTSVDAVFAAVAVAGLL++GLHPL+FFLP+ GA L+ + + LTLP+A Sbjct 128 YWSEDGRTSVDAVFAAVAVAGLLMLGLHPLMFFLPIWHGAGSTALRAAVAGAMALTLPMA 187 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 VVV+LKGKVWTGLLGMF VVLLV+GA+RLSRPHAPWARWRY+ PEKMRRALQRERT RR Sbjct 188 VVVVLKGKVWTGLLGMFFVVLLVIGAIRLSRPHAPWARWRYSTQPEKMRRALQRERTLRR 247 Query 242 PVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 PVVR KL+LQ IAGTPR+PDER VDA LD ++ PAP P T PILIS Sbjct 248 PVVRAKLYLQCAIAGTPRLPDERTVDATLDHEIHPAPAP--TGPILIS 293 >gi|254819749|ref|ZP_05224750.1| hypothetical protein MintA_07489 [Mycobacterium intracellulare ATCC 13950] Length=289 Score = 406 bits (1043), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 212/288 (74%), Positives = 241/288 (84%), Gaps = 2/288 (0%) Query 2 EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIG 61 E+ W +HDI DRG LPLLCCLVAF+LTF VTR+FVR I R +GRP +WW PRNVH+G Sbjct 3 EMSRWFEHDIHDRGHLPLLCCLVAFILTFFVTRTFVRLIRHRVENGRPTKWWHPRNVHVG 62 Query 62 SVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDV 121 VHIHHV FGVVL ++SGLTLVTLS+DG EP+F +AA+ FG+GAALVLDEYALILHLSDV Sbjct 63 GVHIHHVTFGVVLTLLSGLTLVTLSIDGHEPQFMMAATFFGIGAALVLDEYALILHLSDV 122 Query 122 YWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLA 181 YW EDGRTSVDAVFAAVAVAGLL+MGLHPL+FFLP+ AN L+ + + LTLPLA Sbjct 123 YWSEDGRTSVDAVFAAVAVAGLLMMGLHPLMFFLPIWHDANSWALRAVVGGAMALTLPLA 182 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 VVV+LKGKVWTGLLGMF+V+LLV+GAVRLSRPHAPWARWRY P+KMRRALQRER RR Sbjct 183 VVVVLKGKVWTGLLGMFLVILLVIGAVRLSRPHAPWARWRYATQPDKMRRALQRERRLRR 242 Query 242 PVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 PVVR KL+LQ IAGTPR PD+RAVDA+LD +V PAP P T PILIS Sbjct 243 PVVRAKLYLQCAIAGTPRFPDQRAVDARLDDEVHPAPAP--TGPILIS 288 >gi|240168238|ref|ZP_04746897.1| hypothetical protein MkanA1_02927 [Mycobacterium kansasii ATCC 12478] Length=288 Score = 377 bits (969), Expect = 9e-103, Method: Compositional matrix adjust. Identities = 209/287 (73%), Positives = 240/287 (84%), Gaps = 0/287 (0%) Query 3 VFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGS 62 + WLQHDI+DRGRLPLLCCLVAF+LTF VTR+F R I RR D P WWQPR+++IGS Sbjct 1 MLQWLQHDIIDRGRLPLLCCLVAFILTFFVTRTFARIIRRRPGDAPPPSWWQPRDIYIGS 60 Query 63 VHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVY 122 VH+HHVA GV++VM+SGL LVTLSVDGR PEF +A+ FG+GAALVLDEYALILHLSDVY Sbjct 61 VHVHHVAVGVLVVMVSGLALVTLSVDGRAPEFAASATFFGIGAALVLDEYALILHLSDVY 120 Query 123 WEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAV 182 WEEDGRTSVDAVFAAVAVAGLL +G HPL+F L + + V+L L+ G+VLTLPLAV Sbjct 121 WEEDGRTSVDAVFAAVAVAGLLTLGFHPLMFVLAMWSDTHSVMLHAALVGGVVLTLPLAV 180 Query 183 VVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRP 242 VVL KGKVWTGLLGMF+VVLL+VGA+RLSRPHAPWARWRY+ P+KMRRALQRERT RRP Sbjct 181 VVLFKGKVWTGLLGMFIVVLLIVGAIRLSRPHAPWARWRYSARPDKMRRALQRERTLRRP 240 Query 243 VVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 VVR KLWLQ IAGTPR PDE AVDA+LD D+ PAPPP+ +L + Sbjct 241 VVRAKLWLQCAIAGTPRRPDEHAVDARLDLDIHPAPPPKAAERLLTA 287 >gi|108800241|ref|YP_640438.1| hypothetical protein Mmcs_3275 [Mycobacterium sp. MCS] gi|108770660|gb|ABG09382.1| conserved hypothetical protein [Mycobacterium sp. MCS] Length=313 Score = 338 bits (866), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 184/282 (66%), Positives = 221/282 (79%), Gaps = 2/282 (0%) Query 7 LQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVH-IGSVHI 65 LQ D + RLPLLCCLVAF+LTF VTR+ VR+I R A P +WWQPRN+ G +HI Sbjct 27 LQLDFLTVDRLPLLCCLVAFILTFFVTRTIVRYIRRHADSDAPRKWWQPRNIAGTGGMHI 86 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HHV GV+LVM+SGLT+VTL+V+G PEFT AA++FG+GAALVLDEYALILHLSDVYW E Sbjct 87 HHVVIGVILVMVSGLTMVTLAVNGGVPEFTAAATLFGIGAALVLDEYALILHLSDVYWSE 146 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIFF-LPVRQGANWVVLQTTLIAGLVLTLPLAVVV 184 DGRTSVDAVFAAVAVAGLLI+G +PL FF + + + + V + T+IA V+TL LA+VV Sbjct 147 DGRTSVDAVFAAVAVAGLLILGFNPLSFFDVGIWRDDHSVAARATVIALAVVTLMLAMVV 206 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVV 244 L KGKVWTGL+GMF+ LL VGA+RLSRPHAPWARWRYT P KM RAL+RER RRPVV Sbjct 207 LAKGKVWTGLVGMFITPLLFVGALRLSRPHAPWARWRYTNRPRKMHRALERERWLRRPVV 266 Query 245 RIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPI 286 + KLWLQ IAG PR PD+ VD QLD+++ AP P++ A + Sbjct 267 QAKLWLQDAIAGMPRFPDDAKVDEQLDREIHAAPAPQKVAAV 308 >gi|119869369|ref|YP_939321.1| hypothetical protein Mkms_3337 [Mycobacterium sp. KMS] gi|119695458|gb|ABL92531.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=291 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 184/282 (66%), Positives = 221/282 (79%), Gaps = 2/282 (0%) Query 7 LQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVH-IGSVHI 65 LQ D + RLPLLCCLVAF+LTF VTR+ VR+I R A P +WWQPRN+ G +HI Sbjct 5 LQLDFLTVDRLPLLCCLVAFILTFFVTRTIVRYIRRHADSDAPRKWWQPRNIAGTGGMHI 64 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HHV GV+LVM+SGLT+VTL+V+G PEFT AA++FG+GAALVLDEYALILHLSDVYW E Sbjct 65 HHVVIGVILVMVSGLTMVTLAVNGGVPEFTAAATLFGIGAALVLDEYALILHLSDVYWSE 124 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIFF-LPVRQGANWVVLQTTLIAGLVLTLPLAVVV 184 DGRTSVDAVFAAVAVAGLLI+G +PL FF + + + + V + T+IA V+TL LA+VV Sbjct 125 DGRTSVDAVFAAVAVAGLLILGFNPLSFFDVGIWRDDHSVAARATVIALAVVTLMLAMVV 184 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVV 244 L KGKVWTGL+GMF+ LL VGA+RLSRPHAPWARWRYT P KM RAL+RER RRPVV Sbjct 185 LAKGKVWTGLVGMFITPLLFVGALRLSRPHAPWARWRYTNRPRKMHRALERERWLRRPVV 244 Query 245 RIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPI 286 + KLWLQ IAG PR PD+ VD QLD+++ AP P++ A + Sbjct 245 QAKLWLQDAIAGMPRFPDDAKVDEQLDREIHAAPAPQKVAAV 286 >gi|126435864|ref|YP_001071555.1| hypothetical protein Mjls_3286 [Mycobacterium sp. JLS] gi|126235664|gb|ABN99064.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=291 Score = 336 bits (862), Expect = 2e-90, Method: Compositional matrix adjust. Identities = 184/282 (66%), Positives = 221/282 (79%), Gaps = 2/282 (0%) Query 7 LQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVH-IGSVHI 65 LQ D + RLPLLCCLVAF+LTF VTR+ VR+I R A P +WWQPRN+ G +HI Sbjct 5 LQLDFLTVDRLPLLCCLVAFILTFFVTRTIVRYIRRHADSDAPRKWWQPRNIAGTGGMHI 64 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HHV GV+LVM+SGLT+VTL+V+G PEFT AA++FG+GAALVLDEYALILHLSDVYW E Sbjct 65 HHVVIGVILVMVSGLTMVTLAVNGGVPEFTAAATLFGIGAALVLDEYALILHLSDVYWSE 124 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIFF-LPVRQGANWVVLQTTLIAGLVLTLPLAVVV 184 DGRTSVDAVFAAVAVAGLLI+G +PL FF + + + + V + T+IA V+TL LA+VV Sbjct 125 DGRTSVDAVFAAVAVAGLLILGFNPLSFFDVGIWRDDHSVAARATVIALAVVTLMLAMVV 184 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVV 244 L KGKVWTGL+GMF+ LL VGA+RLSRPHAPWARWRYT P KM RAL+RER RRPVV Sbjct 185 LAKGKVWTGLVGMFITPLLFVGALRLSRPHAPWARWRYTNRPRKMHRALERERWLRRPVV 244 Query 245 RIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPI 286 + KLWLQ IAG PR PD+ VD QLD+++ AP P++ A + Sbjct 245 QAKLWLQDAIAGMPRFPDDGKVDEQLDREIHAAPAPQKVAAV 286 >gi|41408016|ref|NP_960852.1| hypothetical protein MAP1918c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396371|gb|AAS04235.1| hypothetical protein MAP_1918c [Mycobacterium avium subsp. paratuberculosis K-10] Length=268 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 175/226 (78%), Positives = 196/226 (87%), Gaps = 2/226 (0%) Query 64 HIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYW 123 HIHHV FGVVL ++SGLTLVTLS++G EPEFT+AA+ FG+GAALVLDEYALILHLSDVYW Sbjct 44 HIHHVTFGVVLTLLSGLTLVTLSINGHEPEFTVAATFFGIGAALVLDEYALILHLSDVYW 103 Query 124 EEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVV 183 EDGRTSVDAVFAAVAV GLLIMGLHPL+FFLP+ GA+ ++L+ + +VLTLPLAVV Sbjct 104 SEDGRTSVDAVFAAVAVGGLLIMGLHPLMFFLPMWHGADSMMLRALVGGAMVLTLPLAVV 163 Query 184 VLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPV 243 V+LKGKVWTGLLGMF+VVLLV+GAVRLSRPHAPWARWRY+ PEKMRRALQRERT RRPV Sbjct 164 VVLKGKVWTGLLGMFLVVLLVIGAVRLSRPHAPWARWRYSTQPEKMRRALQRERTLRRPV 223 Query 244 VRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 VR KL+LQ IAGTPR PDER VDA LD +V PAP P T PILI Sbjct 224 VRAKLYLQCAIAGTPRFPDERTVDATLDHEVHPAPAP--TGPILIG 267 >gi|120404514|ref|YP_954343.1| hypothetical protein Mvan_3542 [Mycobacterium vanbaalenii PYR-1] gi|119957332|gb|ABM14337.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=296 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 172/278 (62%), Positives = 212/278 (77%), Gaps = 2/278 (0%) Query 16 RLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGS-VHIHHVAFGVVL 74 RLPL+CCLVAF+LTF +TR+ VR+I A P +WWQP N+ G +HIHH+ GV+L Sbjct 19 RLPLVCCLVAFILTFFITRTIVRYIRSHADSDAPRKWWQPHNISGGGGLHIHHMVIGVIL 78 Query 75 VMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDGRTSVDAV 134 VM+SG+++V L+VDG PEFT A+ +FG+GAALVLDE+ALILHLSDVYW EDGRTSVDAV Sbjct 79 VMVSGISMVALAVDGGIPEFTAASILFGIGAALVLDEFALILHLSDVYWAEDGRTSVDAV 138 Query 135 FAAVAVAGLLIMGLHPLIFF-LPVRQGANWVVLQTTLIAGLVLTLPLAVVVLLKGKVWTG 193 F AVAVAGLLI+G +PL FF + + Q + V +T ++ VLTL LAV+VLLKGKVWTG Sbjct 139 FVAVAVAGLLILGFNPLSFFDVGIWQNDHSVAARTIVVVAAVLTLALAVIVLLKGKVWTG 198 Query 194 LLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVRIKLWLQYV 253 L+GMF+ LL VGA+RLSRPHAPWARWRYT+ P KM RAL+RER RRPVV+ KLWLQ Sbjct 199 LVGMFITPLLFVGAIRLSRPHAPWARWRYTKRPRKMHRALERERWLRRPVVQAKLWLQDA 258 Query 254 IAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILISGS 291 IAG P+ PD+ VD QLD+++ AP P P+ S Sbjct 259 IAGMPKFPDDALVDEQLDREIHAAPAPGNPEPVTQKAS 296 >gi|333990363|ref|YP_004522977.1| hypothetical protein JDM601_1723 [Mycobacterium sp. JDM601] gi|333486331|gb|AEF35723.1| integral membrane protein [Mycobacterium sp. JDM601] Length=354 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 185/287 (65%), Positives = 221/287 (78%), Gaps = 2/287 (0%) Query 3 VFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGS 62 + W + DI+ RGRLPLLCCL+AF+ TFLVTRS VR+I A RWWQPRN+HIGS Sbjct 1 MLEWFRDDIIGRGRLPLLCCLLAFLATFLVTRSVVRYIRSTAGRVGAPRWWQPRNIHIGS 60 Query 63 VHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVY 122 HIHHV FGV+LVM +G+TLV G EP F++AA FG+GAALVLDEYALILHLSDVY Sbjct 61 KHIHHVVFGVLLVMAAGVTLVAAGPHGHEPAFSLAAISFGIGAALVLDEYALILHLSDVY 120 Query 123 WEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAV 182 WEEDGR SVDAVFAA AVAGLL++G HPL F L + + +++ + AGLV++LPL V Sbjct 121 WEEDGRASVDAVFAATAVAGLLVLGFHPLAFLLSLWHDTSSPLIRAGVFAGLVMSLPLGV 180 Query 183 VVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRP 242 VVLLKGKVWTGL+GMF LLVVGA+RLSRPHAPWARWRY E++RRAL RER RRP Sbjct 181 VVLLKGKVWTGLIGMFFFPLLVVGAIRLSRPHAPWARWRYLPQRERLRRALLRERRLRRP 240 Query 243 VVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILIS 289 V++ KLWLQ +AG P++PDER VDA+LD++VR A P T PI+I Sbjct 241 VIQAKLWLQDAVAGRPQLPDERVVDAELDREVRAASAP--TQPIMIG 285 >gi|118469533|ref|YP_888523.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155] gi|118170820|gb|ABK71716.1| probable conserved integral membrane protein [Mycobacterium smegmatis str. MC2 155] Length=320 Score = 297 bits (761), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 178/273 (66%), Positives = 216/273 (80%), Gaps = 3/273 (1%) Query 10 DIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIHHVA 69 D+V R RLPL+CCL+AF+LTF VTR+ VR+I A +P RWWQPRN+ G++HIHHV Sbjct 8 DLVPRDRLPLVCCLLAFILTFFVTRTVVRYIRSHADSDQPRRWWQPRNIAHGTMHIHHVV 67 Query 70 FGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDGRT 129 GVVLVM+SG+T+VTL+V+G EFT+AA+ FG+GAALVLDE+ALILHLSDVYW EDGRT Sbjct 68 IGVVLVMVSGVTMVTLAVNGGVAEFTVAATFFGIGAALVLDEFALILHLSDVYWSEDGRT 127 Query 130 SVDAVFAAVAVAGLLIMGLHPLIFFLPV--RQGANWVVLQTTLIAGLVLTLPLAVVVLLK 187 SVDAVFAAVAVAGLLI+G +PL FF R+ +W+ ++ +V L LAVVVLLK Sbjct 128 SVDAVFAAVAVAGLLILGFNPLSFFDVDIWREDPSWLARAAVVLLAVVTLL-LAVVVLLK 186 Query 188 GKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVRIK 247 GKVWTGL+GMF+ LLV+GA+RLSRPHAPWARWRYT+ P KM RAL+RER RRPVV+ K Sbjct 187 GKVWTGLVGMFITPLLVIGAIRLSRPHAPWARWRYTKRPRKMHRALERERWLRRPVVQAK 246 Query 248 LWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPP 280 LWLQ I G PR PD+ AVD QLD+++ AP P Sbjct 247 LWLQDAITGMPRFPDDAAVDEQLDREIHAAPAP 279 >gi|145223556|ref|YP_001134234.1| hypothetical protein Mflv_2969 [Mycobacterium gilvum PYR-GCK] gi|315443903|ref|YP_004076782.1| hypothetical protein Mspyr1_23020 [Mycobacterium sp. Spyr1] gi|145216042|gb|ABP45446.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] gi|315262206|gb|ADT98947.1| hypothetical protein Mspyr1_23020 [Mycobacterium sp. Spyr1] Length=296 Score = 295 bits (754), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 174/277 (63%), Positives = 209/277 (76%), Gaps = 10/277 (3%) Query 15 GRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGS-VHIHHVAFGVV 73 RLPL+CCLVAF+LTF +TR+ VR+I +A P +WWQPRN+ G +HIHHV GVV Sbjct 18 SRLPLVCCLVAFILTFFITRTIVRYIRSQAGSDAPRKWWQPRNISAGGGLHIHHVVIGVV 77 Query 74 LVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDGRTSVDA 133 LVM+SG+T+VT++VDG PEFT A+ +FGVGAALVLDE+ALILHL DVYW EDGRTSVDA Sbjct 78 LVMVSGITMVTIAVDGGVPEFTAASILFGVGAALVLDEFALILHLEDVYWAEDGRTSVDA 137 Query 134 VFAAVAVAGLLIMGLHPLIFFLPVRQGANW-----VVLQTTLIAGLVLTLPLAVVVLLKG 188 VF AVAVAGLLI+G +PL FF A+W V + ++ + TL LAV+VLLKG Sbjct 138 VFVAVAVAGLLILGFNPLSFF----DVADWQDDPSVTTRAIVVVAALATLALAVIVLLKG 193 Query 189 KVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVRIKL 248 KVWTGL+GMF+ LLV+GAVRLSRPHAPWARWRYT P KM RAL+RER RRPVV+ KL Sbjct 194 KVWTGLVGMFITPLLVIGAVRLSRPHAPWARWRYTSRPRKMHRALERERWLRRPVVQAKL 253 Query 249 WLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAP 285 WLQ IAG P+ PD+ VD QLD+++ AP P P Sbjct 254 WLQDAIAGMPKFPDDALVDEQLDREIHAAPAPAEREP 290 >gi|336461964|gb|EGO40816.1| hypothetical protein MAPs_25720 [Mycobacterium avium subsp. paratuberculosis S397] Length=180 Score = 253 bits (647), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 141/181 (78%), Positives = 155/181 (86%), Gaps = 2/181 (1%) Query 109 LDEYALILHLSDVYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQT 168 LDEYALILHLSDVYW EDGRTSVDAVFAAVAV GLLIMGLHPL+FFLP+ GA+ ++L+ Sbjct 1 LDEYALILHLSDVYWSEDGRTSVDAVFAAVAVGGLLIMGLHPLMFFLPMWHGADSMMLRA 60 Query 169 TLIAGLVLTLPLAVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEK 228 + +VLTLPLAVVV+LKGKVWTGLLGMF+VVLLV+GAVRLSRPHAPWARWRY+ PEK Sbjct 61 LVGGAMVLTLPLAVVVVLKGKVWTGLLGMFLVVLLVIGAVRLSRPHAPWARWRYSTQPEK 120 Query 229 MRRALQRERTWRRPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPERTAPILI 288 MRRALQRERT RRPVVR KL+LQ IAGTPR PDER VDA LD +V PAP P T PILI Sbjct 121 MRRALQRERTLRRPVVRAKLYLQCAIAGTPRFPDERTVDATLDHEVHPAPAP--TGPILI 178 Query 289 S 289 Sbjct 179 G 179 >gi|54026119|ref|YP_120361.1| hypothetical protein nfa41480 [Nocardia farcinica IFM 10152] gi|54017627|dbj|BAD58997.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=293 Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 146/280 (53%), Positives = 181/280 (65%), Gaps = 10/280 (3%) Query 6 WLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHI 65 WL+ D++ GRLPLLC L F+L FL R VR I AD RWW P N+ G VHI Sbjct 4 WLEQDVIAHGRLPLLCFLFGFILGFLFIRLSVRMIR---AD---VRWW-PGNLRAGDVHI 56 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HH+ FGVVLV+ SGL +V + D P A+ FGVG+ALVLDE+ALI +L DVYWEE Sbjct 57 HHMVFGVVLVLGSGLGMVAVIEDADTPVAAALAAAFGVGSALVLDEFALIYYLRDVYWEE 116 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVL-TLPLAVVV 184 GRTSVDAVF A+AV GLL++G HPL + + + AG L L +A VV Sbjct 117 QGRTSVDAVFVALAVTGLLLLGFHPLSLLEINDFRTSLGTVGHLVAAGFALANLAMAAVV 176 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVV 244 + KGK+WTGL GMF LL VGA+RLSRP APWARWRY M RA+ RER +RRPV+ Sbjct 177 IAKGKIWTGLFGMFFPPLLFVGALRLSRPGAPWARWRYANRRRLMARAIVRERRYRRPVI 236 Query 245 RIKLWLQYVIAGTPRMPDER-AVDAQLDQDVRPAPP-PER 282 R K+++Q ++AG P + R A +A+L + V PAPP P R Sbjct 237 RAKIFVQDLVAGKPDVEHARTAAEAELSRTVVPAPPAPHR 276 >gi|226305943|ref|YP_002765903.1| hypothetical protein RER_24560 [Rhodococcus erythropolis PR4] gi|226185060|dbj|BAH33164.1| conserved hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=296 Score = 248 bits (633), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 143/292 (49%), Positives = 195/292 (67%), Gaps = 13/292 (4%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 WL+ +I+ GRLPLL L+ F+ FL R VR I + +WW P N+ G H Sbjct 4 EWLEREIIAHGRLPLLFFLLGFLSAFLFIRLSVRMIRAQV------KWW-PGNIAPGGQH 56 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 +HHV FGV+ +MISG L+ + VDG + + A+IFG+GAALVLDE+ALI +L DVYW Sbjct 57 VHHVVFGVIAMMISGGALIAVYVDGSQTTGAVLAAIFGMGAALVLDEFALIFYLKDVYWS 116 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFF--LPVRQGAN-WVVLQTTLIAGLVLTLPLA 181 E GRTSVDAVF A+AV GL+++G PL R+ + W+ L +A ++ LA Sbjct 117 EQGRTSVDAVFVAIAVTGLVLLGFRPLELLDVAGFREERDPWIKLVFVFVA--LINFALA 174 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 +V+LKGK+WTGL+G+FV LLV+GAVRLSRP APWARWRYTR P++M RAL+RER WRR Sbjct 175 AIVILKGKIWTGLVGLFVFPLLVIGAVRLSRPGAPWARWRYTRKPKRMNRALERERKWRR 234 Query 242 PVVRIKLWLQYVIAGTPRMPDE-RAVDAQLDQDVRPAPPPERTAPILISGSV 292 PV+R K+++Q +IAG+P + A + +LD + APPP + + SG++ Sbjct 235 PVIRAKIYVQDLIAGSPSVEHAMTAAEQELDHTIHAAPPPPISPLVSASGTM 286 >gi|229491405|ref|ZP_04385229.1| putative membrane protein [Rhodococcus erythropolis SK121] gi|229321690|gb|EEN87487.1| putative membrane protein [Rhodococcus erythropolis SK121] Length=295 Score = 248 bits (633), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 143/292 (49%), Positives = 195/292 (67%), Gaps = 13/292 (4%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 WL+ +I+ GRLPLL L+ F+ FL R VR I + +WW P N+ G H Sbjct 3 EWLEREIIAHGRLPLLFFLLGFLSAFLFIRLSVRMIRAQV------KWW-PGNIAPGGQH 55 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 +HHV FGV+ +MISG L+ + VDG + + A+IFG+GAALVLDE+ALI +L DVYW Sbjct 56 VHHVVFGVIAMMISGGALIAVYVDGSQTTGAVLAAIFGMGAALVLDEFALIFYLKDVYWS 115 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFF--LPVRQGAN-WVVLQTTLIAGLVLTLPLA 181 E GRTSVDAVF A+AV GL+++G PL R+ + W+ L +A ++ LA Sbjct 116 EQGRTSVDAVFVAIAVTGLVLLGFRPLELLDVAGFREERDPWIKLVFVFVA--LINFALA 173 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 +V+LKGK+WTGL+G+FV LLV+GAVRLSRP APWARWRYTR P++M RAL+RER WRR Sbjct 174 AIVILKGKIWTGLVGLFVFPLLVIGAVRLSRPGAPWARWRYTRKPKRMNRALERERKWRR 233 Query 242 PVVRIKLWLQYVIAGTPRMPDE-RAVDAQLDQDVRPAPPPERTAPILISGSV 292 PV+R K+++Q +IAG+P + A + +LD + APPP + + SG++ Sbjct 234 PVIRAKIYVQDLIAGSPSVEHAMTAAEQELDHTIHAAPPPPISPLVSASGTM 285 >gi|325673473|ref|ZP_08153164.1| integral membrane protein [Rhodococcus equi ATCC 33707] gi|325555494|gb|EGD25165.1| integral membrane protein [Rhodococcus equi ATCC 33707] Length=294 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/281 (47%), Positives = 182/281 (65%), Gaps = 9/281 (3%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 HWL +IV GRLPLL LV F+L F+ R VR I RWW P N+ G H Sbjct 3 HWLDREIVANGRLPLLFFLVGFLLAFVFIRISVRMIRAEV------RWW-PGNITPGGQH 55 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 IHHV FGVV + SG+ L+ + + + + A+ FG+G+ALVLDE+ALI +L DVYW Sbjct 56 IHHVVFGVVTMFASGIALIAVYENASQGAGAVLATFFGIGSALVLDEFALIFYLKDVYWS 115 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGAN-WVVLQTTLIAGLVLTLPLAVV 183 + GR SVDAVF A+AV GLL++G PL N + ++ L+ +V+ L LA + Sbjct 116 DQGRASVDAVFVALAVTGLLLLGFQPLELLDITEWRENPHLAVRAALVGLVVVNLGLAAI 175 Query 184 VLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPV 243 V+ KGK+WTGL+GMFV +L+VGA+RLSRP APWARWRY P +MRRA++RE+ +RRP+ Sbjct 176 VIAKGKIWTGLVGMFVFPILLVGAIRLSRPGAPWARWRYVSRPRRMRRAIEREKRFRRPM 235 Query 244 VRIKLWLQYVIAGTPRMPDE-RAVDAQLDQDVRPAPPPERT 283 +R K+++Q ++AG P + A + +L++ V+ AP P T Sbjct 236 IRAKIYVQDLVAGKPSVEHALTATEEELERIVQAAPAPIST 276 >gi|312139221|ref|YP_004006557.1| integral membrane protein [Rhodococcus equi 103S] gi|311888560|emb|CBH47872.1| putative integral membrane protein [Rhodococcus equi 103S] Length=294 Score = 226 bits (576), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 130/278 (47%), Positives = 181/278 (66%), Gaps = 9/278 (3%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 HWL +IV GRLPLL LV F+L F+ R VR I RWW P N+ G H Sbjct 3 HWLDREIVANGRLPLLFFLVGFLLAFVFIRISVRMIRAEV------RWW-PGNITPGGQH 55 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 IHHV FGVV + SG+ L+ + + + + A+ FG+G+ALVLDE+ALI +L DVYW Sbjct 56 IHHVVFGVVTMFASGIALIAVYENASQGAGAVLATFFGIGSALVLDEFALIFYLKDVYWS 115 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGAN-WVVLQTTLIAGLVLTLPLAVV 183 + GR SVDAVF A+AV GLL++G PL N + ++ L+ +V+ L LA + Sbjct 116 DQGRASVDAVFVALAVTGLLLLGFQPLELLDITEWRENPHLAVRAALVGLVVVNLGLAAI 175 Query 184 VLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPV 243 V+ KGK+WTGL+GMFV +L+VGA+RLSRP APWARWRY P +MRRA++RE+ +RRP+ Sbjct 176 VIAKGKIWTGLVGMFVFPILLVGAIRLSRPGAPWARWRYVSRPRRMRRAIEREKRFRRPM 235 Query 244 VRIKLWLQYVIAGTPRMPDE-RAVDAQLDQDVRPAPPP 280 +R K+++Q ++AG P + A + +L++ V+ AP P Sbjct 236 IRAKIYVQDLVAGKPSVEHALTATEEELERIVQAAPAP 273 >gi|226306719|ref|YP_002766679.1| hypothetical protein RER_32320 [Rhodococcus erythropolis PR4] gi|226185836|dbj|BAH33940.1| hypothetical membrane protein [Rhodococcus erythropolis PR4] Length=755 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 121/255 (48%), Positives = 173/255 (68%), Gaps = 11/255 (4%) Query 6 WLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHI 65 W +H +VD GRLPL L+AFVLTFL R VR I + WW P NV G +HI Sbjct 4 WFEHTVVDTGRLPLFFLLLAFVLTFLFIRFSVRMIRAEVS------WW-PGNVTPGGMHI 56 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HH+ FG++++++SG + L+ + AS+FG+G+ALVLDEYAL+LHL DVYW E Sbjct 57 HHMVFGLMMMLVSGFAFIALADYHTPIANCVLASVFGIGSALVLDEYALVLHLRDVYWAE 116 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIF---FLPVRQGANWVVLQTTLIAGLVLTLPLAV 182 +GR+S+DAVF A+A++ L ++G+HP+ F F P Q + L ++A +V+ L LAV Sbjct 117 EGRSSIDAVFVAIAISFLFLLGVHPIGFAGEFDPYEQDRSLATLIGVVVA-IVIQLGLAV 175 Query 183 VVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRP 242 + L+KGK+WTGL+G+F LL+VGA+RLSRP APWAR RY P KM RA+ RE+ +R P Sbjct 176 ITLMKGKLWTGLIGLFFTPLLLVGAIRLSRPGAPWARSRYRDKPAKMSRAVAREQRYREP 235 Query 243 VVRIKLWLQYVIAGT 257 ++ K+++Q ++G+ Sbjct 236 MIHAKIYVQETVSGS 250 >gi|229494896|ref|ZP_04388649.1| putative membrane protein [Rhodococcus erythropolis SK121] gi|229318254|gb|EEN84122.1| putative membrane protein [Rhodococcus erythropolis SK121] Length=755 Score = 213 bits (543), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/255 (48%), Positives = 173/255 (68%), Gaps = 11/255 (4%) Query 6 WLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHI 65 W +H +VD GRLPL L+AFVLTFL R VR I + WW P NV G +HI Sbjct 4 WFEHTVVDTGRLPLFFLLLAFVLTFLFIRFSVRMIRAEVS------WW-PGNVTPGGMHI 56 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HH+ FG++++++SG + L+ + AS+FG+G+ALVLDEYAL+LHL DVYW E Sbjct 57 HHMVFGLMMMLVSGFAFIALADYHTPIANCVLASVFGIGSALVLDEYALVLHLRDVYWAE 116 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIF---FLPVRQGANWVVLQTTLIAGLVLTLPLAV 182 +GR+S+DAVF A+A++ L ++G+HP+ F F P Q + L ++A +V+ L LAV Sbjct 117 EGRSSIDAVFVAIAISFLFLLGVHPIGFAGEFDPYEQDRSLATLIGVVVA-IVIQLGLAV 175 Query 183 VVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRP 242 + L+KGK+WTGL+G+F LL++GA+RLSRP APWAR RY P KM RA+ RE+ +R P Sbjct 176 ITLMKGKLWTGLIGLFFTPLLLIGAIRLSRPGAPWARSRYRDKPAKMSRAVAREQRYREP 235 Query 243 VVRIKLWLQYVIAGT 257 ++ K+++Q ++G+ Sbjct 236 MIHAKIYVQETVSGS 250 >gi|269125530|ref|YP_003298900.1| hypothetical protein Tcur_1279 [Thermomonospora curvata DSM 43183] gi|268310488|gb|ACY96862.1| hypothetical protein Tcur_1279 [Thermomonospora curvata DSM 43183] Length=271 Score = 204 bits (519), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 125/278 (45%), Positives = 168/278 (61%), Gaps = 11/278 (3%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 W +I+D GRL LLC VAF+ FL R VR I R+ RWW P N+ G H Sbjct 3 QWFTREIIDTGRLRLLCFFVAFICGFLFIRCSVRMIRRQV------RWW-PGNITPGGHH 55 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 IHHV FG+VL+ + G+ +T+ +D IAAS+FGVG ALVLDE+AL+L L DVYW Sbjct 56 IHHVVFGLVLMCVGGVGGLTV-IDTDSVWAAIAASLFGVGMALVLDEFALVLLLKDVYWS 114 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGAN-WVVLQTTLIAGLVLTLPLAVV 183 E GR SV+ VF A+A+ GL+++GLHPL V N + + Q L+ ++ L LAV+ Sbjct 115 EQGRLSVEVVFIAIALCGLVLLGLHPLGVDDAVDGDGNPYALWQVVLL--VLFNLTLAVI 172 Query 184 VLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPV 243 LLKGK+WTGLLG+F+ L +VGA+RL+RP +PWAR+RY K RR+ RER RP Sbjct 173 TLLKGKIWTGLLGLFITALALVGAIRLARPGSPWARYRYPPGSRKDRRSRIRERRLHRPA 232 Query 244 VRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPPPE 281 + + ++AG P +P R A+ R P+ Sbjct 233 QEVFDSIANIVAGRPSLPTGRHTSARHRSTHRHKKSPQ 270 >gi|226366002|ref|YP_002783785.1| hypothetical protein ROP_65930 [Rhodococcus opacus B4] gi|226244492|dbj|BAH54840.1| hypothetical membrane protein [Rhodococcus opacus B4] Length=303 Score = 201 bits (511), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 142/297 (48%), Positives = 190/297 (64%), Gaps = 20/297 (6%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 + ++ WL +IV GRLPLL L+ F+ +FL R VR I + WW P NV Sbjct 1 MPMYEWLDREIVGHGRLPLLFFLLGFLASFLFIRLSVRMIRAEVS------WW-PGNVKP 53 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 G H+HHV FGVV +++SG++L+ + DG + + A+ FG+GAALVLDE+ALI +L D Sbjct 54 GGHHVHHVVFGVVTMLVSGVSLIAVYEDGTQTTGAVLATFFGIGAALVLDEFALIFYLQD 113 Query 121 VYWEEDGRTSVDAVFAAVAVAG--LLIMGLHPLIFFLPVRQGAN-WVVLQTTLIAGLVLT 177 VYW ++GRTSVDAVF A+AV G LL + LI R + WV + L + V+ Sbjct 114 VYWADEGRTSVDAVFVAIAVTGLLLLGLRPLELINVTDFRDSPDPWVRVAIALSS--VIN 171 Query 178 LPLAVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRER 237 L +A VVLLKGK+WTGLLG+FV +L++GA+RLSRP APWARWRYT P++M RAL+RER Sbjct 172 LLIAAVVLLKGKIWTGLLGLFVFPILLIGALRLSRPSAPWARWRYTSKPKRMLRALERER 231 Query 238 TWRRPVVRIKLWLQYVIAGTPRMPDER--------AVDAQLDQDVRPAPPPERTAPI 286 WRRPV+R K+++Q IAGTP + A + +LD V APPP P+ Sbjct 232 KWRRPVIRAKIFVQDFIAGTPSAVHVKEAAEHAKVAAEVELDHVVHAAPPPISLHPV 288 >gi|111023500|ref|YP_706472.1| hypothetical protein RHA1_ro06541 [Rhodococcus jostii RHA1] gi|110823030|gb|ABG98314.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=303 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 141/297 (48%), Positives = 188/297 (64%), Gaps = 20/297 (6%) Query 1 LEVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHI 60 + ++ WL +IV GRLPLL L+ F+ FL R VR I + WW P NV Sbjct 1 MPMYEWLDREIVGHGRLPLLFFLLGFLAAFLFIRLSVRMIRAEVS------WW-PGNVKP 53 Query 61 GSVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSD 120 G H+HHV FGVV +++SG++L+ + DG + + A+ FGVGAALVLDE+ALI +L D Sbjct 54 GGHHVHHVVFGVVTMLVSGVSLIAVYEDGTQTTGAVLATFFGVGAALVLDEFALIFYLQD 113 Query 121 VYWEEDGRTSVDAVFAAVAVAG--LLIMGLHPLIFFLPVRQGAN-WVVLQTTLIAGLVLT 177 VYW ++GRTSVDAVF A+AV G LL + LI R + WV + + V+ Sbjct 114 VYWADEGRTSVDAVFVAIAVTGLLLLGLRPLELINVTDFRDSPDPWVRIAIAFSS--VIN 171 Query 178 LPLAVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRER 237 L +A VVLLKGK+WTGLLG+F+ +L++GA+RLSRP APWARWRYT P++M RAL+RER Sbjct 172 LLIAAVVLLKGKIWTGLLGLFIFPILLIGALRLSRPSAPWARWRYTSKPKRMLRALERER 231 Query 238 TWRRPVVRIKLWLQYVIAGTPRMPDER--------AVDAQLDQDVRPAPPPERTAPI 286 WRRPV+R K+++Q IAGTP + A + +LD V APPP P+ Sbjct 232 KWRRPVIRAKIFVQDFIAGTPSAVHVKEAAEHARVAAEVELDHVVHAAPPPISLHPV 288 >gi|333918725|ref|YP_004492306.1| hypothetical protein AS9A_1054 [Amycolicicoccus subflavus DQS3-9A1] gi|333480946|gb|AEF39506.1| Hypothetical membrane protein [Amycolicicoccus subflavus DQS3-9A1] Length=270 Score = 198 bits (504), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 121/271 (45%), Positives = 162/271 (60%), Gaps = 11/271 (4%) Query 6 WLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHI 65 W IVD GRLPL +VAF LTFL R R I + + WW P NV G +HI Sbjct 4 WFTERIVDSGRLPLFFLMVAFALTFLFIRFSTRMIRAQVS------WW-PGNVTPGGLHI 56 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HH FG+V+++ISG L+ + I A++FG+GAALVLDE+A++LHL D YW + Sbjct 57 HHSVFGLVMMLISGFLLIASASYDTSVTDNILAALFGIGAALVLDEFAMLLHLRDDYWTQ 116 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIF---FLPVRQGANWVVLQTTLIAGLVLTLPLAV 182 +GR S+DAVF A A+ L ++G+HPL F + VL + I+ L + LA Sbjct 117 EGRESIDAVFVAFAITVLFVLGIHPLGLSGDFARYDEQRTAAVLAIS-ISVLAVQYGLAA 175 Query 183 VVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRP 242 V LLKGKVW+GL G+F+ LL+VGA+RLSRP APWARW Y K RA RE+ +R+P Sbjct 176 VTLLKGKVWSGLFGLFLPPLLLVGAIRLSRPAAPWARWFYRPESRKQARAEAREKRFRQP 235 Query 243 VVRIKLWLQYVIAGTPRMPDERAVDAQLDQD 273 VR K+ ++ +AG + D A D +D Sbjct 236 AVRAKIAVEQALAGKFDLADPSADDTDARRD 266 >gi|271969010|ref|YP_003343206.1| hypothetical protein Sros_7797 [Streptosporangium roseum DSM 43021] gi|270512185|gb|ACZ90463.1| hypothetical protein Sros_7797 [Streptosporangium roseum DSM 43021] Length=278 Score = 195 bits (496), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 115/257 (45%), Positives = 159/257 (62%), Gaps = 9/257 (3%) Query 3 VFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGS 62 V W +IV G+L L C V+F+ TFL R VR I + RWW P NV G Sbjct 26 VGSWFSTEIVAAGKLRLFCFFVSFIATFLFIRISVRLIRAQV------RWW-PGNVAPGG 78 Query 63 VHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVY 122 +HIHHV FG+V + + G++ + + D + A++FG G +LVLDE+AL+LHL DVY Sbjct 79 MHIHHVVFGLVFMCVGGISGLAVE-DNTSASAGLLAALFGSGTSLVLDEFALVLHLDDVY 137 Query 123 WEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPL-A 181 W + GR SVDAVF AVA+ GL ++G PL + GA+ VL T IA +V T L + Sbjct 138 WTQQGRLSVDAVFVAVALCGLALLGASPLELGDALNPGADGKVLSRTEIALIVGTNTLLS 197 Query 182 VVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRR 241 ++ L KGK+WTGLLG+++ L ++GAVRL+RP +PWAR RY ++RRA RE+ R Sbjct 198 LISLAKGKIWTGLLGIYITPLALIGAVRLARPGSPWARRRYRPGSRRLRRAEWREKRIRD 257 Query 242 PVVRIKLWLQYVIAGTP 258 P+ R+K+ Q +AG P Sbjct 258 PIERVKIGFQNFVAGRP 274 >gi|271963300|ref|YP_003337496.1| hypothetical protein Sros_1762 [Streptosporangium roseum DSM 43021] gi|270506475|gb|ACZ84753.1| hypothetical protein Sros_1762 [Streptosporangium roseum DSM 43021] Length=259 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 133/266 (50%), Positives = 176/266 (67%), Gaps = 24/266 (9%) Query 7 LQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIH 66 L+ IVD GRLPL C VA + F+ TR VR I RA G W+ RNV++G +HIH Sbjct 5 LRQRIVDTGRLPLFCFFVALIGAFVFTRINVRLI--RAKIG----WF--RNVNVGEMHIH 56 Query 67 HVAFGVVLVMISGLTLVTLSVDG-REPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HV FGVVL M+ G++ L V G + + + A++FG+GAAL+LDE+ALILHL DVYWE Sbjct 57 HVVFGVVLTMLGGVS--GLIVSGISQTWYAVTAAVFGIGAALILDEFALILHLHDVYWEA 114 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAG-LVLTLPLAVVV 184 +GRTSVDAVF A+A+ GLL++GL PL + + ++ T L AG +VL L LAVV Sbjct 115 EGRTSVDAVFIAIAITGLLLLGLRPLGW-----ERSDGTPQGTWLTAGVIVLNLALAVVT 169 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARW------RYTRHPEKMRRALQRERT 238 LLKGK+WTGL G+F+ +LL+ GA+RL+RP +PWA W R R P +M RA +RE Sbjct 170 LLKGKIWTGLAGLFIPILLIPGALRLARPGSPWAHWFMAPGARRPR-PRQMARAERREER 228 Query 239 WRRPVVRIKLWLQYVIAGTPRMPDER 264 WRRPV+R K+ Q ++G +P R Sbjct 229 WRRPVIRAKIAFQEFVSGRHDLPSTR 254 >gi|72160678|ref|YP_288335.1| hypothetical protein Tfu_0274 [Thermobifida fusca YX] gi|71914410|gb|AAZ54312.1| conserved hypothetical protein [Thermobifida fusca YX] Length=276 Score = 182 bits (463), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 121/280 (44%), Positives = 168/280 (60%), Gaps = 11/280 (3%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 W IV GRLPL VAFV FL+ R VR I R RWW P N+ +H Sbjct 3 EWFAVHIVATGRLPLFSFFVAFVAGFLMIRCSVRMIRARV------RWW-PGNLTPFGLH 55 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 IHHV FGV ++I G+ + ++ D AA++FG GAALVLDE+ALILHL DVYW Sbjct 56 IHHVVFGVAFMLIGGVAGLLIT-DRDGAAMATAAALFGFGAALVLDEFALILHLRDVYWT 114 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVV 184 E GRTSVDAVF A+A++GLL+ GL P+ + L + + Q ++A +++ A V Sbjct 115 EQGRTSVDAVFVAIALSGLLLTGLRPVGWGL-WGITVDTTITQIGMVALILINFAGAAVS 173 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVV 244 LLKGK+W+G++G+F+ V+ ++ A+RL+ P +PWARWRY K+ A++R++ RRP + Sbjct 174 LLKGKIWSGIIGIFIPVISIITAIRLAVPGSPWARWRYPEGSAKLAAAIRRDQRLRRPFI 233 Query 245 RIKLWLQYVIAGTPRMPDE--RAVDAQLDQDVRPAPPPER 282 R K+W Q +IAG + E A QL + PP R Sbjct 234 RAKIWFQELIAGRHDLILEPSPAFHQQLPTVSERSTPPVR 273 >gi|336461902|gb|EGO40755.1| hypothetical protein MAPs_25730 [Mycobacterium avium subsp. paratuberculosis S397] Length=108 Score = 172 bits (435), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 79/106 (75%), Positives = 89/106 (84%), Gaps = 0/106 (0%) Query 2 EVFHWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIG 61 EV W HD+ DRG LPLLCCLVAF+LTF VTRSFVRFI RA GRPARWW PRNVH+G Sbjct 3 EVTRWFAHDVYDRGHLPLLCCLVAFILTFFVTRSFVRFIRHRAETGRPARWWHPRNVHVG 62 Query 62 SVHIHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAAL 107 VHIHHV FGVVL ++SGLTLVTLS++G EPEFT+AA+ FG+GAAL Sbjct 63 GVHIHHVTFGVVLTLLSGLTLVTLSINGHEPEFTVAATFFGIGAAL 108 >gi|118618823|ref|YP_907155.1| hypothetical protein MUL_3535 [Mycobacterium ulcerans Agy99] gi|118570933|gb|ABL05684.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length=279 Score = 164 bits (416), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 93/122 (77%), Positives = 108/122 (89%), Gaps = 0/122 (0%) Query 97 AASIFGVGAALVLDEYALILHLSDVYWEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLP 156 + FG+GAALVLDEYALILHLSDVYWEEDGRTSVDAVFAAVAVAGLL +GLHPL+FF Sbjct 77 GGNFFGIGAALVLDEYALILHLSDVYWEEDGRTSVDAVFAAVAVAGLLTLGLHPLMFFPT 136 Query 157 VRQGANWVVLQTTLIAGLVLTLPLAVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAP 216 + G++ V+ + ++ GLVLTLPLA VVL+KGKVWTGLLGMF+VVLLV+GA+RLSRPHAP Sbjct 137 IWSGSDSVLPRAVVVGGLVLTLPLATVVLIKGKVWTGLLGMFIVVLLVIGAIRLSRPHAP 196 Query 217 WA 218 WA Sbjct 197 WA 198 >gi|333027704|ref|ZP_08455768.1| putative integral membrane protein [Streptomyces sp. Tu6071] gi|332747556|gb|EGJ77997.1| putative integral membrane protein [Streptomyces sp. Tu6071] Length=252 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 118/276 (43%), Positives = 153/276 (56%), Gaps = 33/276 (11%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 HWL + V+ G+LPLL L+AFV+TFLVTR+ R I RA G RN+ G VH Sbjct 3 HWLDRNFVEPGKLPLLLALLAFVVTFLVTRTITRLI--RAGRG------PFRNLTPGGVH 54 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 +HH G++L ++ G V G I A +FG+G LVLDE+ALILHL+DVYW Sbjct 55 VHHCVPGIILAVVGGFGAVGSGKHGIAA--GICAVVFGIGTGLVLDEFALILHLADVYWS 112 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVV 184 E GR SV+ V A+ L++ G P I V QG + T I ++ L VV Sbjct 113 EQGRQSVEVVVLTAALGALVVAGAVP-IGVDQVSQGE--AAGRATAIGTILFDLCFVVVC 169 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQR----ERTWR 240 L KGK+ GL+G+FV + +VGAVRL+RP +PWAR RY P + RAL R +RTWR Sbjct 170 LAKGKIRLGLIGVFVPFVALVGAVRLARPGSPWARRRYADRPHRRARALLRAYHADRTWR 229 Query 241 RPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRP 276 R V R Q ++ GTP D+DV P Sbjct 230 RWVRR----FQDLVGGTP------------DEDVPP 249 >gi|296139346|ref|YP_003646589.1| hypothetical protein Tpau_1629 [Tsukamurella paurometabola DSM 20162] gi|296027480|gb|ADG78250.1| conserved hypothetical protein [Tsukamurella paurometabola DSM 20162] Length=325 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 130/271 (48%), Positives = 173/271 (64%), Gaps = 11/271 (4%) Query 6 WLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHI 65 W DIV+ GRLPL V ++ FL R+ VR I RWW NV G +H+ Sbjct 4 WFTRDIVEAGRLPLFAFFVGLIVGFLCIRASVRLIRAEV------RWWFG-NVRPGGLHV 56 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEE 125 HHV FGVVL + S + L+ + + A IFG+GAALVLDE+ALIL+L DVYW+E Sbjct 57 HHVVFGVVLCLGSAVGLIANFGTATQTTAAVLAGIFGLGAALVLDEFALILYLRDVYWQE 116 Query 126 DGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVVL 185 +GRTSVDAVF A+A+ GLL++GL PL G +T I +++L A +VL Sbjct 117 EGRTSVDAVFVAIAMTGLLLLGLRPLDLVDVA--GFRDSPQRTAQIGFALVSLGTAAIVL 174 Query 186 LKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVR 245 LKGK+WTGLLG++ LL+VGA+RLSRP APWARWRY R +M RAL+RER RRP++R Sbjct 175 LKGKIWTGLLGLYFFPLLLVGAIRLSRPGAPWARWRYDRDSRRMLRALRRERRLRRPLIR 234 Query 246 IKLWLQYVIAGTPR-MPDERA-VDAQLDQDV 274 +K+ +Q ++AG P +P R + +LD+ V Sbjct 235 VKIAVQDLMAGRPDLLPHLREDTEKELDRTV 265 >gi|311896910|dbj|BAJ29318.1| hypothetical protein KSE_35110 [Kitasatospora setae KM-6054] Length=333 Score = 159 bits (401), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 106/251 (43%), Positives = 138/251 (55%), Gaps = 16/251 (6%) Query 8 QHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIHH 67 +H IVD + PL LV F+ +F R R I + RWW P N+ G +HIHH Sbjct 10 RHHIVDAHKQPLFLLLVGFITSFAFIRFSTRMIRAQV------RWW-PGNITPGGLHIHH 62 Query 68 VAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDG 127 + L + + T + DG P FG+G LVLDE+ALILHL DVYW E G Sbjct 63 MV--FGLGFLLLGGIGTFATDGGHPWIDWFGLSFGIGCGLVLDEFALILHLDDVYWSEQG 120 Query 128 RTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVVLLK 187 R SVDAV + + LL+ G PL +P Q W ++ + LV ++ LLK Sbjct 121 RKSVDAVILGILLTALLLTGYVPL-GVVPG-QDTRWGLVAVIGVNALV-----CLIALLK 173 Query 188 GKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVRIK 247 GKVWTGLLG+ V L +GA+RL+RP +PWARWRYT P +M RA++RER R + Sbjct 174 GKVWTGLLGIMVPGLSWIGAIRLARPSSPWARWRYTGRPRRMARAIRRERRLHARTDRAR 233 Query 248 LWLQYVIAGTP 258 WL +IAG P Sbjct 234 TWLFDLIAGAP 244 >gi|29832569|ref|NP_827203.1| integral membrane protein [Streptomyces avermitilis MA-4680] gi|29609689|dbj|BAC73738.1| putative integral membrane protein [Streptomyces avermitilis MA-4680] Length=254 Score = 154 bits (390), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 110/286 (39%), Positives = 148/286 (52%), Gaps = 47/286 (16%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 HWL +I++ G+LPLL L +FVLTF++TR R I RA G NV G +H Sbjct 3 HWLHRNIIEPGKLPLLLALASFVLTFVITRVITRLI--RAGKGPFG------NVKAGGLH 54 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAA--SIFGVGAALVLDEYALILHLSDVY 122 IHHV GVVL++I G V G F AA +FG+GA LVLDE+AL+LHL DVY Sbjct 55 IHHVVPGVVLIVIGGFGAVASERHG----FGSAAFAVVFGIGAGLVLDEFALLLHLDDVY 110 Query 123 WEEDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQT-----TLIAGLVLT 177 W E+GR SV+ V A+ GL + G FLP G N + + +I + L Sbjct 111 WTEEGRKSVEVVVVTAALVGLALAG------FLPF--GVNDLSQEELRDRGGVILSVGLN 162 Query 178 LPLAVVVLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHP----EKMRRAL 233 A++ L KGK T + G+ V ++ +VGA+RL+RP +PWAR Y + P RA Sbjct 163 FVFALLALSKGKGRTAIFGVIVPLVALVGAIRLARPGSPWARRFYRKRPRARARSSLRAY 222 Query 234 QRERTWRRPVVRIKLWLQYVIAGTPRMPDERAVDAQLDQDVRPAPP 279 + +R W P + + W I G P D + P PP Sbjct 223 RHDRRWAGPRRKFQDW----IGGKP------------DSENLPIPP 252 >gi|302538380|ref|ZP_07290722.1| integral membrane protein [Streptomyces sp. C] gi|302447275|gb|EFL19091.1| integral membrane protein [Streptomyces sp. C] Length=245 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 105/255 (42%), Positives = 142/255 (56%), Gaps = 17/255 (6%) Query 6 WLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHI 65 W +I++ G+LPLL L AFV+TF+VTR R I RA G RNV G +H+ Sbjct 4 WWYRNILEPGKLPLLLALSAFVVTFMVTRVITRMI--RAGKG------PFRNVTPGGLHV 55 Query 66 HHVAFGVVLVMISGLTLVTLSVDGREPEFT-IAASIFGVGAALVLDEYALILHLSDVYWE 124 HH GV+L+ + G T + GR + +AA +FG+G LVLDE+ALILHLSDVYW Sbjct 56 HHCVPGVILMTVGGFTAIA---GGRTGWGSWVAAVLFGMGTGLVLDEFALILHLSDVYWT 112 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPL-IFFLPVRQGANWVVLQTTLIAGLVLTLPLAVV 183 E+G SV+ V A+AGLL+ G PL + L Q AN + L T++ L LA V Sbjct 113 EEGTLSVEVVVMTSALAGLLLCGFLPLGVDGLTEDQQANRLFLGATVL----FNLLLAAV 168 Query 184 VLLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPV 243 L KGK + GM V ++ + AVRL+RP +PWAR Y P R ++R R Sbjct 169 ALFKGKPRLAVFGMVVPMIALFAAVRLARPASPWARRFYGHRPRTRARTIKRAYRHDRRW 228 Query 244 VRIKLWLQYVIAGTP 258 ++ + Y+I G P Sbjct 229 GGLERRVGYLIGGAP 243 >gi|256375183|ref|YP_003098843.1| hypothetical protein Amir_1041 [Actinosynnema mirum DSM 43827] gi|255919486|gb|ACU34997.1| hypothetical protein Amir_1041 [Actinosynnema mirum DSM 43827] Length=240 Score = 152 bits (384), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 113/248 (46%), Positives = 152/248 (62%), Gaps = 26/248 (10%) Query 15 GRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIHHVAFGVVL 74 G+ L+ + V+TF+ R VR I RA RWW P N G HIHHV FG V Sbjct 8 GQARLMFFFLGLVVTFVFIRISVRLI--RAG----VRWW-PGNFTPGGTHIHHVVFGAVF 60 Query 75 VMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDGRTSVDAV 134 +M+ G+T + + D AA++ GVGAALVLDE+ALILHL DVYW +DGR SVDAV Sbjct 61 MMVGGVTGIAVP-DDAVGLRLAAAALLGVGAALVLDEFALILHLRDVYWSKDGRLSVDAV 119 Query 135 FAAVAVAGLLIMGLHPLIF------FLPVRQGANWVVLQTTLIAGLVLTLPLAVVVLLKG 188 F A+ + GLL++G PL + +PVR +A L+ L A+V LLKG Sbjct 120 FLAIGMTGLLLLGARPLGYDDVLGESVPVR------------VALLLGNLGFAIVALLKG 167 Query 189 KVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVRIKL 248 KVWTGLLG+ + +L +GA+RL+RP +PWARW Y + K+RRA +RE RRP+++ K+ Sbjct 168 KVWTGLLGLLIPLLPQIGALRLARPRSPWARWHYPDNSRKLRRAERRENRIRRPLIQAKI 227 Query 249 WLQYVIAG 256 +Q I+G Sbjct 228 RVQEFISG 235 >gi|337765521|emb|CCB74230.1| Integral membrane protein (modular protein) [Streptomyces cattleya NRRL 8057] Length=863 Score = 152 bits (383), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 105/240 (44%), Positives = 140/240 (59%), Gaps = 16/240 (6%) Query 29 TFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIHHVAFGVVLVMISGLTLVTLSVD 88 +F+ R VR I R RWW P N+ G +HIHHV FG V++++ G+ L + Sbjct 24 SFVFIRFSVRMIRR------GVRWW-PGNIKPGGLHIHHVVFGQVMMLVGGIGSFALRGE 76 Query 89 GREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDGRTSVDAVFAAVAVAGLLIMGL 148 + A IFG+G LVLDE+AL+LHL DVYW E+GR SVDAV AVAV GLL +G+ Sbjct 77 AHTAR-NVLAVIFGIGCGLVLDEFALVLHLEDVYWSEEGRKSVDAVILAVAVVGLLALGV 135 Query 149 HPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVVLLKGKVWTGLLGMFVVVLLVVGAV 208 PL GA VV + L VV LLKGKVWTGL+G+ + L +VGAV Sbjct 136 APLGGIHGRVTGAQLVVA--------AILLVFVVVSLLKGKVWTGLIGVMLPPLAMVGAV 187 Query 209 RLSRPHAPWARWRYTRHPEKMRRALQRERTWRRPVVRIKLWLQYVIAGTPRMPDERAVDA 268 RL+RP++PWARWRY P ++ RA +RE + ++ K + +AG P + RA +A Sbjct 188 RLARPNSPWARWRYYSRPRRLARAERREERVHQRILAAKRRVYNALAGAPHIETPRAAEA 247 >gi|158317374|ref|YP_001509882.1| hypothetical protein Franean1_5625 [Frankia sp. EAN1pec] gi|158112779|gb|ABW14976.1| conserved hypothetical protein [Frankia sp. EAN1pec] Length=265 Score = 145 bits (365), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 93/212 (44%), Positives = 127/212 (60%), Gaps = 11/212 (5%) Query 11 IVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIHHVAF 70 IV+ G+ PLL LVAF+LTFL R VR I RA RWW P NV +G VH+HH F Sbjct 13 IVEPGKQPLLALLVAFILTFLFIRLSVRMI--RAG----VRWW-PGNVAVGGVHVHHAIF 65 Query 71 GVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDGRTS 130 G+ V+++G+ + GR P + + A +FGVGAAL+LDE+AL+L L DVYW E GR S Sbjct 66 GIAFVLLAGVGAFS-PAGGRSPWWDLLAILFGVGAALILDEFALVLRLKDVYWSEQGRMS 124 Query 131 VDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVVLLKGKV 190 VDAV A LLI+G PL + G + + ++ G + + LKG+V Sbjct 125 VDAVILGAAFTALLIVGATPL-GVDGLDTGDHLALWDLIVVLG--INIVAVSCSFLKGRV 181 Query 191 WTGLLGMFVVVLLVVGAVRLSRPHAPWARWRY 222 G++G+ + ++ VVGAVRL+RP + WA RY Sbjct 182 GFGVVGLLIPLVAVVGAVRLARPGSAWAHRRY 213 >gi|312195855|ref|YP_004015916.1| hypothetical protein FraEuI1c_1996 [Frankia sp. EuI1c] gi|311227191|gb|ADP80046.1| hypothetical protein FraEuI1c_1996 [Frankia sp. EuI1c] Length=249 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 99/234 (43%), Positives = 131/234 (56%), Gaps = 19/234 (8%) Query 9 HD-IVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVHIHH 67 HD I+ GR PLL LV V FL R+ R I RWW P NV G VH+HH Sbjct 11 HDQIIRTGRQPLLLLLVGLVGGFLFIRTSARLIRANV------RWW-PGNVSAGGVHVHH 63 Query 68 VAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWEEDG 127 FGV++++++G V G P + A +FG+GA LVLDE+AL+LHL DVYW +G Sbjct 64 EFFGVLIMLVAGT--VGFGTSGAGPWRDVLALVFGIGAGLVLDEFALLLHLQDVYWTREG 121 Query 128 RTSVDAVFAAVAVAGLLIMGLHP--LIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVVL 185 R+SVDAV A A+ GL ++ P L + A W TL+ ++ L L V+ Sbjct 122 RSSVDAVIVATALTGLFLVRAAPFGLADISGDERSARW-----TLVGLVLFNLSLTVLTA 176 Query 186 LKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPWARWRYTRHPEKMRRALQRERTW 239 +KGK WT + +FV VL + GA RL+ P +PWAR RY P K+ RA +R W Sbjct 177 IKGKPWTAMFSVFVTVLGIWGATRLAAPRSPWARRRY--DPPKLARATRRAERW 228 >gi|297199156|ref|ZP_06916553.1| integral membrane protein [Streptomyces sviceus ATCC 29083] gi|297147304|gb|EFH28572.1| integral membrane protein [Streptomyces sviceus ATCC 29083] Length=251 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/213 (44%), Positives = 124/213 (59%), Gaps = 13/213 (6%) Query 5 HWLQHDIVDRGRLPLLCCLVAFVLTFLVTRSFVRFIHRRAADGRPARWWQPRNVHIGSVH 64 HWL +IV+ G+LPLL L AFVLTF++TR R I RA G NV G VH Sbjct 3 HWLHRNIVEPGKLPLLLALTAFVLTFVITRVITRLI--RAGKGPFG------NVSSGGVH 54 Query 65 IHHVAFGVVLVMISGLTLVTLSVDGREPEFTIAASIFGVGAALVLDEYALILHLSDVYWE 124 IHHV GVVL ++ G V G + A +FG+GA LVLDE+ALILHL DVYW Sbjct 55 IHHVVPGVVLTIVGGFGAVASGRHGFGA--GLCAVVFGMGAGLVLDEFALILHLDDVYWS 112 Query 125 EDGRTSVDAVFAAVAVAGLLIMGLHPLIFFLPVRQGANWVVLQTTLIAGLVLTLPLAVVV 184 E+GR SV+ V VA+ GL++ G P V QG + +I+ +V+ A++V Sbjct 113 EEGRKSVEVVVLTVALVGLVLAGFSPF-GVNDVSQGEAQD--RGGVISSVVVNFLFAMLV 169 Query 185 LLKGKVWTGLLGMFVVVLLVVGAVRLSRPHAPW 217 LLKGK + + V ++ ++G +RL+RP +PW Sbjct 170 LLKGKTRMAIFSVIVPLVGLIGLIRLARPGSPW 202 Lambda K H 0.329 0.142 0.462 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 489554810128 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40