BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2191 Length=645 Score E Sequences producing significant alignments: (Bits) Value gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [... 1291 0.0 gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycoba... 1290 0.0 gi|344220013|gb|AEN00644.1| hypothetical protein MTCTRI2_2226 [M... 1288 0.0 gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycoba... 1288 0.0 gi|340627196|ref|YP_004745648.1| hypothetical protein MCAN_22131... 1287 0.0 gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [... 1287 0.0 gi|339295106|gb|AEJ47217.1| hypothetical protein CCDC5079_2027 [... 1286 0.0 gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycoba... 1274 0.0 gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 ... 940 0.0 gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subun... 937 0.0 gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_0298... 909 0.0 gi|342859901|ref|ZP_08716554.1| hypothetical protein MCOL_13518 ... 894 0.0 gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Myc... 867 0.0 gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_099... 867 0.0 gi|336461914|gb|EGO40767.1| exonuclease, DNA polymerase III, eps... 855 0.0 gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycob... 853 0.0 gi|333990351|ref|YP_004522965.1| hypothetical protein JDM601_171... 840 0.0 gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 ... 808 0.0 gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 ... 807 0.0 gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III... 806 0.0 gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [My... 806 0.0 gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [M... 759 0.0 gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c ... 630 3e-178 gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subu... 625 8e-177 gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subun... 617 1e-174 gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subu... 617 1e-174 gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subu... 614 2e-173 gi|333918956|ref|YP_004492537.1| putative DNA polymerase III sub... 606 3e-171 gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 ... 602 6e-170 gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 ... 590 2e-166 gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsi... 564 2e-158 gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsi... 562 6e-158 gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 ... 554 2e-155 gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Noca... 553 3e-155 gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 ... 553 5e-155 gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720... 551 1e-154 gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 ... 551 2e-154 gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Str... 548 8e-154 gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsi... 545 9e-153 gi|343924173|ref|ZP_08763736.1| DNA polymerase III epsilon subun... 538 9e-151 gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512... 526 6e-147 gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsi... 483 5e-134 gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsi... 457 2e-126 gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 ... 455 1e-125 gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Fr... 441 3e-121 gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, eps... 439 5e-121 gi|315504521|ref|YP_004083408.1| DNA polymerase III, subunit eps... 436 4e-120 gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 ... 436 9e-120 gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsi... 435 1e-119 gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Ac... 434 4e-119 >gi|254232344|ref|ZP_04925671.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289750785|ref|ZP_06510163.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|124601403|gb|EAY60413.1| conserved hypothetical protein [Mycobacterium tuberculosis C] gi|289691372|gb|EFD58801.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|323719091|gb|EGB28236.1| hypothetical protein TMMG_01471 [Mycobacterium tuberculosis CDC1551A] Length=647 Score = 1291 bits (3340), Expect = 0.0, Method: Compositional matrix adjust. Identities = 645/645 (100%), Positives = 645/645 (100%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA Sbjct 3 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 62 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 63 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 122 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 123 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 182 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 183 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 242 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 243 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 302 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 303 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 362 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 363 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 422 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 423 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 482 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL Sbjct 483 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 542 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 543 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 602 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 603 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 647 >gi|15609328|ref|NP_216707.1| hypothetical protein Rv2191 [Mycobacterium tuberculosis H37Rv] gi|148662008|ref|YP_001283531.1| hypothetical protein MRA_2207 [Mycobacterium tuberculosis H37Ra] gi|148823398|ref|YP_001288152.1| hypothetical protein TBFG_12219 [Mycobacterium tuberculosis F11] 26 more sequence titles Length=645 Score = 1290 bits (3337), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/645 (99%), Positives = 645/645 (100%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 +QGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA Sbjct 1 MQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL Sbjct 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 >gi|344220013|gb|AEN00644.1| hypothetical protein MTCTRI2_2226 [Mycobacterium tuberculosis CTRI-2] Length=645 Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/645 (99%), Positives = 645/645 (100%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 +QGPNVAAMGATGGTQLSFA+LAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA Sbjct 1 MQGPNVAAMGATGGTQLSFANLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL Sbjct 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 >gi|31793370|ref|NP_855863.1| hypothetical protein Mb2214 [Mycobacterium bovis AF2122/97] gi|121638072|ref|YP_978296.1| hypothetical protein BCG_2207 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990566|ref|YP_002645253.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|31618962|emb|CAD97067.1| CONSERVED HYPOTHETICAL PROTEIN [Mycobacterium bovis AF2122/97] gi|121493720|emb|CAL72195.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773679|dbj|BAH26485.1| hypothetical protein JTY_2201 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602110|emb|CCC64784.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=645 Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/645 (99%), Positives = 644/645 (99%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 +QGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA Sbjct 1 MQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAET ALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 361 PFRSRSKAAETTALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL Sbjct 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 >gi|340627196|ref|YP_004745648.1| hypothetical protein MCAN_22131 [Mycobacterium canettii CIPT 140010059] gi|340005386|emb|CCC44545.1| conserved hypothetical protein [Mycobacterium canettii CIPT 140010059] Length=645 Score = 1287 bits (3331), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/645 (99%), Positives = 644/645 (99%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 +QGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA Sbjct 1 MQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIR GAQAILPTPAPL Sbjct 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRHGAQAILPTPAPL 540 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 >gi|289574877|ref|ZP_06455104.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339632219|ref|YP_004723861.1| hypothetical protein MAF_22020 [Mycobacterium africanum GM041182] gi|289539308|gb|EFD43886.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|339331575|emb|CCC27272.1| conserved hypothetical protein [Mycobacterium africanum GM041182] Length=645 Score = 1287 bits (3330), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/645 (99%), Positives = 644/645 (99%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 +QGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSL ETTFVVVDLETTGGRTTGNDA Sbjct 1 MQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLSETTFVVVDLETTGGRTTGNDA 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL Sbjct 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 >gi|339295106|gb|AEJ47217.1| hypothetical protein CCDC5079_2027 [Mycobacterium tuberculosis CCDC5079] Length=645 Score = 1286 bits (3329), Expect = 0.0, Method: Compositional matrix adjust. Identities = 643/645 (99%), Positives = 644/645 (99%), Gaps = 0/645 (0%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 +QGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA Sbjct 1 MQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM Sbjct 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA Sbjct 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR Sbjct 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH Sbjct 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG Sbjct 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA Sbjct 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA Sbjct 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPV DAIRRGAQAILPTPAPL Sbjct 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVGDAIRRGAQAILPTPAPL 540 Query 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS Sbjct 541 GGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS 600 Query 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 >gi|15841682|ref|NP_336719.1| hypothetical protein MT2247 [Mycobacterium tuberculosis CDC1551] gi|289754299|ref|ZP_06513677.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|308232063|ref|ZP_07414780.2| hypothetical protein TMAG_00380 [Mycobacterium tuberculosis SUMu001] 26 more sequence titles Length=637 Score = 1274 bits (3296), Expect = 0.0, Method: Compositional matrix adjust. Identities = 637/637 (100%), Positives = 637/637 (100%), Gaps = 0/637 (0%) Query 9 MGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITE 68 MGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITE Sbjct 1 MGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITE 60 Query 69 IGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDS 128 IGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDS Sbjct 61 IGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDS 120 Query 129 VLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAV 188 VLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAV Sbjct 121 VLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAV 180 Query 189 ASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPH 248 ASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPH Sbjct 181 ASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPH 240 Query 249 RPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLE 308 RPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLE Sbjct 241 RPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLE 300 Query 309 AGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKA 368 AGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKA Sbjct 301 AGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKA 360 Query 369 AETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALI 428 AETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALI Sbjct 361 AETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALI 420 Query 429 GGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAK 488 GGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAK Sbjct 421 GGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAK 480 Query 489 PDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEI 548 PDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEI Sbjct 481 PDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEI 540 Query 549 ALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLSRGWQSDLP 608 ALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLSRGWQSDLP Sbjct 541 ALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLSRGWQSDLP 600 Query 609 TEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 TEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG Sbjct 601 TEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 637 >gi|183983226|ref|YP_001851517.1| hypothetical protein MMAR_3235 [Mycobacterium marinum M] gi|183176552|gb|ACC41662.1| conserved hypothetical protein [Mycobacterium marinum M] Length=674 Score = 940 bits (2430), Expect = 0.0, Method: Compositional matrix adjust. Identities = 507/674 (76%), Positives = 557/674 (83%), Gaps = 31/674 (4%) Query 1 VQGPNVAAMGATGGTQLS--------FADLA----HAQGAAWTPADEMSLRETTFVVVDL 48 V+ PNV AMGATGGTQLS FAD+A A AD++SLRETTFVVVDL Sbjct 3 VRVPNVTAMGATGGTQLSLTGLDPAAFADIALPGTDLTDPAAAQADDVSLRETTFVVVDL 62 Query 49 ETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMV 108 ETTGGR TG +A+PPDAITEIGAVKV GG +LGEFATLV+PQ SIPPQIVRLTGITTAM+ Sbjct 63 ETTGGRATGTEASPPDAITEIGAVKVRGGVILGEFATLVDPQRSIPPQIVRLTGITTAML 122 Query 109 GNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRV 168 +APTID+VLPMFFEF G+SVLVAHNAGFDIGFLRAAA RCDI WP +VLCT+RLARRV Sbjct 123 CDAPTIDSVLPMFFEFVGNSVLVAHNAGFDIGFLRAAAGRCDIAWPGSKVLCTVRLARRV 182 Query 169 LSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSY 228 LSR+EAPSVRLAALARLF+VA+ PTHRALDDARATV+VLHALIERVGNQGVH+YAELR+Y Sbjct 183 LSREEAPSVRLAALARLFSVATQPTHRALDDARATVEVLHALIERVGNQGVHSYAELRAY 242 Query 229 LPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRM 288 LP VT AQR KRVLA+ LPHRPG+YLFRGPSGEVLYVGTA DLRRRVSQYFNG D R RM Sbjct 243 LPGVTPAQRRKRVLADGLPHRPGIYLFRGPSGEVLYVGTAVDLRRRVSQYFNGADSRGRM 302 Query 289 TEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLS 348 EMV LA ++DHVECAH LEAGVRELRML+ HAPPYNRRS+FP+RWWWV LTDEAFPRLS Sbjct 303 KEMVALAGAVDHVECAHALEAGVRELRMLAAHAPPYNRRSRFPHRWWWVTLTDEAFPRLS 362 Query 349 VIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPA 408 V+RAPRHDRVVGPFRSR+ A ETAALLAR TG+RTCT RL RSA HGPACPELEVSACPA Sbjct 363 VVRAPRHDRVVGPFRSRTDATETAALLARFTGVRTCTKRLARSALHGPACPELEVSACPA 422 Query 409 ARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEA 468 R+VTA YA+A RAA LI G+DN AL AAV QV++LAER RYESAARLRDH+ATA+E Sbjct 423 TRNVTAEGYADAAKRAADLIEGVDNTALTAAVHQVSDLAERHRYESAARLRDHIATAVEV 482 Query 469 LWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRR 528 LW GQRLRAL ALPEL+AA PDG GGYQ AVIRHGQLAAAG + RG PPMPVVDA+ Sbjct 483 LWRGQRLRALVALPELVAAAPDGC--GGYQFAVIRHGQLAAAGNSRRGTPPMPVVDALHA 540 Query 529 GAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSN--------DAAGLASPVRSAG 580 GAQ ILP PAPLGGALVEE ALIARWLA PGVRIV V+ ++AG SP+RSAG Sbjct 541 GAQTILPAPAPLGGALVEETALIARWLATPGVRIVRVTGTEHTADRAESAGWTSPLRSAG 600 Query 581 PWAAWAATARSAQLAGEQLSR---------GWQSDLPTEPHPSREQLFGRTGVDCRTGPP 631 PWAAWAA ARSA+LA EQ+S+ G QSD+ EPHPSREQL GRT VD G Sbjct 601 PWAAWAAAARSARLAAEQVSQGDPRGRPDGGRQSDVLAEPHPSREQLLGRTAVDSHRGAL 660 Query 632 QPLLPGRQPFSTAG 645 QP+LPG +PFS AG Sbjct 661 QPVLPGGEPFSAAG 674 >gi|296166059|ref|ZP_06848506.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898580|gb|EFG78139.1| DNA polymerase III epsilon subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length=648 Score = 937 bits (2423), Expect = 0.0, Method: Compositional matrix adjust. Identities = 504/650 (78%), Positives = 549/650 (85%), Gaps = 9/650 (1%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 V G NVAAMGA G TQLSFA+L + AA D +SLR+TTFVVVDLETTGGRT Sbjct 3 VAGLNVAAMGAGGATQLSFAELGSSFAAAAD--DGVSLRDTTFVVVDLETTGGRTKATGG 60 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 PDAITEIGAVKV GG VLGEFATLV+P+ SIPPQIVRLTGITTAMV +AP IDAVLPM Sbjct 61 NAPDAITEIGAVKVRGGVVLGEFATLVDPERSIPPQIVRLTGITTAMVSDAPRIDAVLPM 120 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 F EFAGD+VLVAHNAGFDIGFLRAAA RCDI WP+P+VLCT+RLARRVLSR+EAPSVRL Sbjct 121 FLEFAGDAVLVAHNAGFDIGFLRAAAARCDIAWPRPKVLCTVRLARRVLSREEAPSVRLG 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 ALARLFAVA+ PTHRALDDARATV+VLHALIERVGNQGVHTYA+LRSYLP+VT QR KR Sbjct 181 ALARLFAVAAQPTHRALDDARATVEVLHALIERVGNQGVHTYADLRSYLPDVTPTQRRKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAE LP RPGVYLFRGPSGEVLYVGTA DLRRRV QYF G D R RM EMV LA+++DH Sbjct 241 VLAEGLPRRPGVYLFRGPSGEVLYVGTAVDLRRRVGQYFTGADPRGRMKEMVNLATAVDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAH LEAGVRELR+L+ HAPPYNRRS+FP+RWWWVALTDEAFPRL+V+RAPRHDR VG Sbjct 301 VECAHALEAGVRELRLLAAHAPPYNRRSRFPHRWWWVALTDEAFPRLAVVRAPRHDRAVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFRSR+ AA+TAALLAR TGLRTCT RL R+ HGPAC E EVS CPAAR++TA QYA A Sbjct 361 PFRSRADAADTAALLARFTGLRTCTARLGRTVLHGPACAEAEVSPCPAARNITATQYAAA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 V R AALI G+DNAAL+AAV QVT LAERRR+E+AARLRD ATA+E LW GQRLR LA Sbjct 421 VARVAALIDGMDNAALSAAVDQVTALAERRRFENAARLRDRTATAVEILWRGQRLRTLAT 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPELIAA PDG EGGY LAV+RHGQLAA+G A RGVPPMPVVDAI GAQAILPT APL Sbjct 481 LPELIAAAPDG--EGGYHLAVVRHGQLAASGSARRGVPPMPVVDAIVAGAQAILPTAAPL 538 Query 541 GGALVEEIALIARWLAEPGVRIVGVSN--DAAGLASPVRSAGPWAAWAATARSAQLAGEQ 598 GGALVEE ALIARWLA PGVRIV V + DAAG ASP+RSAGPWA WAATARSA+LA EQ Sbjct 539 GGALVEESALIARWLAGPGVRIVRVDDSPDAAGWASPLRSAGPWAQWAATARSARLAYEQ 598 Query 599 L-SRGWQSD--LPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 + ++ Q D L EPHPSREQLFG G+D R G PQP+LP RQPFS AG Sbjct 599 IAAQAAQHDSHLLAEPHPSREQLFGGAGIDRRAGAPQPVLPRRQPFSAAG 648 >gi|240168250|ref|ZP_04746909.1| hypothetical protein MkanA1_02987 [Mycobacterium kansasii ATCC 12478] Length=680 Score = 909 bits (2348), Expect = 0.0, Method: Compositional matrix adjust. Identities = 501/669 (75%), Positives = 552/669 (83%), Gaps = 29/669 (4%) Query 4 PNVAAMGATGGTQLSFADLAH----AQGAAWTPADEMSLRETTFVVVDLETTGGRTTGND 59 PNV AMGA+GGTQLS A L A PADE+ LRETTFVVVDLETTGGRTTG + Sbjct 14 PNVTAMGASGGTQLSLAGLDPLAFPGLDPAGAPADELPLRETTFVVVDLETTGGRTTGTE 73 Query 60 ATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLP 119 A PPDAITEIGAVKV GG VL EFATLV+PQ SIPPQIV+LTGITTAMV +AP I AVLP Sbjct 74 AAPPDAITEIGAVKVRGGTVLAEFATLVDPQRSIPPQIVQLTGITTAMVRDAPVISAVLP 133 Query 120 MFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRL 179 MFFEFAG+SV VAHNAGFDIGFLRAAAR+CDITWP+P+VLCT+RLARRVLSR+EAPSVRL Sbjct 134 MFFEFAGNSVFVAHNAGFDIGFLRAAARQCDITWPRPKVLCTVRLARRVLSREEAPSVRL 193 Query 180 AALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCK 239 A LARLF+VA+ PTHRALDDARATVDVLHALIERVGNQGVHT+A+LRSYLPNVT AQR K Sbjct 194 AELARLFSVATQPTHRALDDARATVDVLHALIERVGNQGVHTFADLRSYLPNVTPAQRRK 253 Query 240 RVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSID 299 RVLA+ LPHRPG+Y+FRGPSGEVLYVGTA DLRRRVSQYFNG D R R+ EMV LA+ +D Sbjct 254 RVLADGLPHRPGIYVFRGPSGEVLYVGTAVDLRRRVSQYFNGADPRGRIKEMVNLATGVD 313 Query 300 HVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVV 359 HVECAHPLEAGVRELRML+ HAPPYNRRS+FP+RWWWV L++EAFPRL+V+RAPRH RV+ Sbjct 314 HVECAHPLEAGVRELRMLAAHAPPYNRRSRFPHRWWWVVLSEEAFPRLAVVRAPRHGRVI 373 Query 360 GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAE 419 GP+RSR+ AAETA LLAR TG+RTCT RL RSA HGPACPELEVS CPAAR++TA +YAE Sbjct 374 GPYRSRADAAETATLLARFTGIRTCTKRLARSAVHGPACPELEVSPCPAARNLTAQRYAE 433 Query 420 AVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALA 479 AV RA LI G DN ALAAA+ QVT LAER RYESAARLRDH+ATAIE LW GQRLRALA Sbjct 434 AVQRATDLIDGRDNTALAAAIHQVTVLAERHRYESAARLRDHIATAIETLWRGQRLRALA 493 Query 480 ALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAP 539 ALPELIAA PDG GGYQ AVIRHGQLAAAG A RGVPPMPVVDA++ GAQAI+P AP Sbjct 494 ALPELIAAAPDG--GGGYQFAVIRHGQLAAAGTARRGVPPMPVVDALQAGAQAIMPAEAP 551 Query 540 LGGALVEEIALIARWLAEPGVRIVGVSN--------DAAGLASPVRSAGPWAAWAATARS 591 LGGALVEE ALIARWLA P VRIV V+ + AG A+P+R AG WAAWAA+ARS Sbjct 552 LGGALVEETALIARWLAAPRVRIVRVTGIPDASGAAETAGWATPLRCAGAWAAWAASARS 611 Query 592 AQLAGEQ----LSRGW-----------QSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLP 636 A+LA EQ + R + S+L EPHPSREQLFGR VD R GP Q +LP Sbjct 612 ARLAVEQAPGPMGRHFPQQDPPHRQAGSSELLAEPHPSREQLFGRAAVDRRAGPLQAVLP 671 Query 637 GRQPFSTAG 645 QPFS AG Sbjct 672 RGQPFSPAG 680 >gi|342859901|ref|ZP_08716554.1| hypothetical protein MCOL_13518 [Mycobacterium colombiense CECT 3035] gi|342133033|gb|EGT86253.1| hypothetical protein MCOL_13518 [Mycobacterium colombiense CECT 3035] Length=641 Score = 894 bits (2310), Expect = 0.0, Method: Compositional matrix adjust. Identities = 498/648 (77%), Positives = 539/648 (84%), Gaps = 12/648 (1%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 V G NV A+ + G TQLSFAD+ G+ +TP DE+SLRETTFVVVDLETTGGRT G Sbjct 3 VAGLNVTAVTSRGATQLSFADV----GSPFTP-DELSLRETTFVVVDLETTGGRTKGTAG 57 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 PDAITEIGAVKV GG VLGEFATLV+PQ SIPPQIV+LTGITTAM+ +APTIDAVLPM Sbjct 58 AVPDAITEIGAVKVRGGVVLGEFATLVDPQRSIPPQIVQLTGITTAMISDAPTIDAVLPM 117 Query 121 FFEFAG---DSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSV 177 F EFAG +VLVAHNAGFD+GFLRAAA++CDI WP+PQVLCT+RLARRVLSR+EAPSV Sbjct 118 FLEFAGLDLGTVLVAHNAGFDVGFLRAAAQQCDIAWPRPQVLCTVRLARRVLSREEAPSV 177 Query 178 RLAALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQR 237 RLA+LARLFAVA+ PTHRALDDARATVDVLHALIERVGNQGVHTYA+LRSYLP+VT QR Sbjct 178 RLASLARLFAVATQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRSYLPDVTPTQR 237 Query 238 CKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASS 297 KRVLAE LP RPGVYLFRGPSGEVLYVGTA DLRRRVSQYF G D R RM EMV LA + Sbjct 238 RKRVLAEGLPRRPGVYLFRGPSGEVLYVGTAVDLRRRVSQYFTGADPRGRMKEMVALAGA 297 Query 298 IDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDR 357 +DHVECAH LEAGVRELR+L+ HAPPYNRRSKFP RWWWVALTDEAFPRL+V+RAPRHDR Sbjct 298 VDHVECAHALEAGVRELRLLAAHAPPYNRRSKFPRRWWWVALTDEAFPRLAVVRAPRHDR 357 Query 358 VVGPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQY 417 VGPFRSR+ AA+TAALLAR TGLRTCT RL RSA HGP C E EVS CPA R VTA QY Sbjct 358 AVGPFRSRADAADTAALLARFTGLRTCTNRLGRSALHGPLCAEAEVSPCPAERGVTATQY 417 Query 418 AEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRA 477 A AV R AAL+ G DN AL +AV QV LA+R +ESAARLRD + T +E LW GQRLRA Sbjct 418 AAAVARVAALVDGADNDALRSAVDQVGALAQRHHFESAARLRDRIVTTVETLWRGQRLRA 477 Query 478 LAALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTP 537 LAALPELIAA PD EGGY LAVIRHGQLAAAG A RGVPPMPVVDAI GAQAILPTP Sbjct 478 LAALPELIAAAPDA--EGGYHLAVIRHGQLAAAGSARRGVPPMPVVDAIVAGAQAILPTP 535 Query 538 APLGGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGE 597 APLGGALVEE ALI RWL PGVRIV V+ D G ASP+RSAG W+AWAATARSA+LA E Sbjct 536 APLGGALVEETALIVRWLTAPGVRIVRVAED--GWASPLRSAGAWSAWAATARSARLAAE 593 Query 598 QLSRGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 Q+S SDL EPHPSREQLFGRT VD G QP+LP RQPFS AG Sbjct 594 QVSAQGLSDLLAEPHPSREQLFGRTRVDGPAGAGQPVLPRRQPFSAAG 641 >gi|118466522|ref|YP_881505.1| hypothetical protein MAV_2300 [Mycobacterium avium 104] gi|118167809|gb|ABK68706.1| DNA polymerase III, epsilon subunit [Mycobacterium avium 104] Length=643 Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/647 (75%), Positives = 537/647 (83%), Gaps = 14/647 (2%) Query 4 PNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPP 63 P V + + G TQLSFAD+ G A+ P +E++LR+TTFVVVDLETTGGR+T T P Sbjct 6 PTVTTVASDGATQLSFADV----GPAFGP-EEVALRDTTFVVVDLETTGGRSTSTGETAP 60 Query 64 DAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFE 123 DAITEIGAVKV G VLGEFATLV+PQ SIPPQI+RLTGITTAMV +AP IDAVLPMF E Sbjct 61 DAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTGITTAMVSDAPAIDAVLPMFLE 120 Query 124 FAG---DSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FAG +VLVAHNAGFD+GFLRAAA++CDI WP+P+VLCT+RLARRVLSR+EAPSVRLA Sbjct 121 FAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVLCTVRLARRVLSREEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 +LARLFAV + PTHRALDDARATVDVLHALIERVGNQGVHTYA+LR YLP+VT AQR KR Sbjct 181 SLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRGYLPDVTPAQRRKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAE LP RPGVYLFRGPSGEVLY+GTA DLRRRV+QYF G D R RM EMV LA ++DH Sbjct 241 VLAEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAH LEAGVRELR+L+ HAPPYNRRS+FP RWWWVALTDEAFPRL+V+RAPRHDR VG Sbjct 301 VECAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALTDEAFPRLAVVRAPRHDRAVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFR+R+ AA+TA LLAR GLRTCT RL R+A HGP CPE EV+ CPAAR VTA QYA A Sbjct 361 PFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAAA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 V R AALI G DN+ALAAAV QV LAERR +ESAARLRD ATA+E LW GQRLR LA+ Sbjct 421 VARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVEVLWRGQRLRVLAS 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPEL+AA PDG +GGYQLAV+R+G+LAAAG A RGVPPMPVVDAI AQAI P P PL Sbjct 481 LPELVAAAPDG--QGGYQLAVVRYGRLAAAGNARRGVPPMPVVDAITAAAQAIWPEPGPL 538 Query 541 GGALVEEIALIARWLAEPGVRIVGV--SNDAAGLASPVRSAGPWAAWAATARSAQLAGEQ 598 GGALVEE ALIARWL PGVRIV V + DAAG ASP+RSAG WAAWAA ARSA+LA EQ Sbjct 539 GGALVEETALIARWLEAPGVRIVRVEGTQDAAGWASPLRSAGAWAAWAAAARSARLASEQ 598 Query 599 LSRGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 R S+L TEPHP+REQLFGR GVD TG QP+LPGRQPF AG Sbjct 599 ALRA--SELLTEPHPTREQLFGRAGVDGGTGAGQPVLPGRQPFGAAG 643 >gi|254774974|ref|ZP_05216490.1| hypothetical protein MaviaA2_09919 [Mycobacterium avium subsp. avium ATCC 25291] Length=648 Score = 867 bits (2239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/647 (75%), Positives = 537/647 (83%), Gaps = 14/647 (2%) Query 4 PNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPP 63 P V + + G TQLSFAD+ G A+ P +E++LR+TTFVVVDLETTGGR+T T P Sbjct 11 PTVTTVASDGATQLSFADV----GPAFGP-EEVALRDTTFVVVDLETTGGRSTSTGETAP 65 Query 64 DAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFE 123 DAITEIGAVKV G VLGEFATLV+PQ SIPPQI+RLTGITTAMV +AP IDAVLPMF E Sbjct 66 DAITEIGAVKVRDGVVLGEFATLVDPQRSIPPQIMRLTGITTAMVSDAPAIDAVLPMFLE 125 Query 124 FAG---DSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FAG +VLVAHNAGFD+GFLRAAA++CDI WP+P+VLCT+RLARRVLSR+EAPSVRLA Sbjct 126 FAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVLCTVRLARRVLSREEAPSVRLA 185 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 +LARLFAV + PTHRALDDARATVDVLHALIERVGNQGVHTYA+LR YLP+VT AQR KR Sbjct 186 SLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRGYLPDVTPAQRRKR 245 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAE LP RPGVYLFRGPSGEVLY+GTA DLRRRV+QYF G D R RM EMV LA ++DH Sbjct 246 VLAEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDH 305 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAH LEAGVRELR+L+ HAPPYNRRS+FP RWWWVALTDEAFPRL+V+RAPRHDR VG Sbjct 306 VECAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALTDEAFPRLAVVRAPRHDRAVG 365 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFR+R+ AA+TA LLAR GLRTCT RL R+A HGP CPE EV+ CPAAR VTA QYA A Sbjct 366 PFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAAA 425 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 V R AALI G DN+ALAAAV QV LAERR +ESAARLRD ATA+E LW GQRLR LA+ Sbjct 426 VARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVEVLWRGQRLRVLAS 485 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPEL+AA PDG +GGYQLAV+R+G+LAAAG A RGVPPMPVVDAI AQAI P P PL Sbjct 486 LPELVAAAPDG--QGGYQLAVVRYGRLAAAGNARRGVPPMPVVDAITAAAQAIWPEPGPL 543 Query 541 GGALVEEIALIARWLAEPGVRIVGV--SNDAAGLASPVRSAGPWAAWAATARSAQLAGEQ 598 GGALVEE ALIARWL PGVRIV V + DAAG ASP+RSAG WAAWAA ARSA+LA EQ Sbjct 544 GGALVEETALIARWLEAPGVRIVRVEGTQDAAGWASPLRSAGAWAAWAAAARSARLASEQ 603 Query 599 LSRGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 R S+L TEPHP+REQLFGR GVD TG QP+LPGRQPF AG Sbjct 604 ALRA--SELLTEPHPTREQLFGRAGVDGGTGAGQPVLPGRQPFGAAG 648 >gi|336461914|gb|EGO40767.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium avium subsp. paratuberculosis S397] Length=648 Score = 855 bits (2208), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/647 (75%), Positives = 537/647 (83%), Gaps = 14/647 (2%) Query 4 PNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPP 63 P V + + G TQLSFAD+ G A+ P DE++LR+TTFVVVDLETTGGR+T + T P Sbjct 11 PTVTTVASDGATQLSFADV----GPAFGP-DEVALRDTTFVVVDLETTGGRSTSTEETAP 65 Query 64 DAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFE 123 DAITEIGAVKV GG VLGEFATLV+PQ SIPPQI+RLTGITTAMV +AP IDAVLPMF E Sbjct 66 DAITEIGAVKVRGGVVLGEFATLVDPQRSIPPQIMRLTGITTAMVSDAPAIDAVLPMFLE 125 Query 124 FAG---DSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FAG +VLVAHNAGFD+GFLRAAA++CDI WP+P+VLCT+RLARRVLSR+EAPSVRLA Sbjct 126 FAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVLCTVRLARRVLSREEAPSVRLA 185 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 +LARLFAV + PTHRALDDARATVDVLHALIERVGNQGVHTYA+LR YLP+VT QR KR Sbjct 186 SLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRGYLPDVTPTQRRKR 245 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAE LP RPGVYLFRGPSGEVLY+GTA DLRRRV+QYF G D R RM EMV LA ++DH Sbjct 246 VLAEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDH 305 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAH LEAGVRELR+L+ HAPPYNRRS+FP RWWWVALTDEA+PRL+V+RAPRHDR VG Sbjct 306 VECAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALTDEAYPRLAVVRAPRHDRAVG 365 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFR+R+ AA+TA LLAR GLRTCT RL R+A HGP CPE EV+ CPAAR VTA QYA A Sbjct 366 PFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAAA 425 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 V R AALI G DN+ALAAAV QV LAERR +ESAARLRD ATA+E LW GQRLRALA+ Sbjct 426 VARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVETLWRGQRLRALAS 485 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPEL+AA PDG +GGYQLAV+R+G+LAAAG A RGVPPMPVVDAI AQAI P P PL Sbjct 486 LPELVAAAPDG--QGGYQLAVVRYGRLAAAGNARRGVPPMPVVDAITAAAQAIWPEPGPL 543 Query 541 GGALVEEIALIARWLAEPGVRIVGVSN--DAAGLASPVRSAGPWAAWAATARSAQLAGEQ 598 GGALVEE ALIARWL PGVRIV V DAAG ASP+RSAG WAAWAA ARSA+LA EQ Sbjct 544 GGALVEETALIARWLEAPGVRIVRVKGTPDAAGWASPLRSAGAWAAWAAAARSARLASEQ 603 Query 599 LSRGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 R S+L TEPHP+REQLFGR GVD G QP+LPGRQPF AG Sbjct 604 ALRA--SELLTEPHPTREQLFGRAGVDGGAGAGQPVLPGRQPFGAAG 648 >gi|41408028|ref|NP_960864.1| hypothetical protein MAP1930 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396383|gb|AAS04247.1| hypothetical protein MAP_1930 [Mycobacterium avium subsp. paratuberculosis K-10] Length=643 Score = 853 bits (2205), Expect = 0.0, Method: Compositional matrix adjust. Identities = 484/647 (75%), Positives = 537/647 (83%), Gaps = 14/647 (2%) Query 4 PNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPP 63 P V + + G TQLSFAD+ G A+ P DE++LR+TTFVVVDLETTGGR+T + T P Sbjct 6 PTVTTVASDGATQLSFADV----GPAFGP-DEVALRDTTFVVVDLETTGGRSTSTEETAP 60 Query 64 DAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFE 123 DAITEIGAVKV GG VLGEFATLV+PQ SIPPQI+RLTGITTAMV +AP IDAVLPMF E Sbjct 61 DAITEIGAVKVRGGVVLGEFATLVDPQRSIPPQIMRLTGITTAMVSDAPAIDAVLPMFLE 120 Query 124 FAG---DSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 FAG +VLVAHNAGFD+GFLRAAA++CDI WP+P+VLCT+RLARRVLSR+EAPSVRLA Sbjct 121 FAGLDRGAVLVAHNAGFDVGFLRAAAQQCDIAWPRPRVLCTVRLARRVLSREEAPSVRLA 180 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 +LARLFAV + PTHRALDDARATVDVLHALIERVGNQGVHTYA+LR YLP+VT QR KR Sbjct 181 SLARLFAVTTQPTHRALDDARATVDVLHALIERVGNQGVHTYADLRGYLPDVTPTQRRKR 240 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 VLAE LP RPGVYLFRGPSGEVLY+GTA DLRRRV+QYF G D R RM EMV LA ++DH Sbjct 241 VLAEGLPRRPGVYLFRGPSGEVLYIGTAVDLRRRVAQYFTGADPRGRMKEMVALAGAVDH 300 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAH LEAGVRELR+L+ HAPPYNRRS+FP RWWWVALTDEA+PRL+V+RAPRHDR VG Sbjct 301 VECAHALEAGVRELRLLAAHAPPYNRRSRFPQRWWWVALTDEAYPRLAVVRAPRHDRAVG 360 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEA 420 PFR+R+ AA+TA LLAR GLRTCT RL R+A HGP CPE EV+ CPAAR VTA QYA A Sbjct 361 PFRARADAADTAELLARFAGLRTCTNRLGRAALHGPLCPEAEVAPCPAARGVTATQYAAA 420 Query 421 VLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAA 480 V R AALI G DN+ALAAAV QV LAERR +ESAARLRD ATA+E LW GQRLRALA+ Sbjct 421 VARVAALIDGADNSALAAAVDQVAALAERRHFESAARLRDRTATAVETLWRGQRLRALAS 480 Query 481 LPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPL 540 LPEL+AA PDG +GGYQLAV+R+G+LAAAG A RGVPPMPVVDAI AQAI P P PL Sbjct 481 LPELVAAAPDG--QGGYQLAVVRYGRLAAAGNARRGVPPMPVVDAITAAAQAIWPEPGPL 538 Query 541 GGALVEEIALIARWLAEPGVRIVGVSN--DAAGLASPVRSAGPWAAWAATARSAQLAGEQ 598 GGALVEE ALIARWL PGVRIV V DAAG ASP+RSAG WAAWAA ARSA+LA EQ Sbjct 539 GGALVEETALIARWLEAPGVRIVRVKGTPDAAGWASPLRSAGAWAAWAAAARSARLASEQ 598 Query 599 LSRGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 R S+L TEPHP+REQLFGR GVD G QP+LPGRQPF AG Sbjct 599 ALRA--SELLTEPHPTREQLFGRAGVDGGAGAGQPVLPGRQPFGAAG 643 >gi|333990351|ref|YP_004522965.1| hypothetical protein JDM601_1711 [Mycobacterium sp. JDM601] gi|333486319|gb|AEF35711.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=633 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 460/641 (72%), Positives = 506/641 (79%), Gaps = 27/641 (4%) Query 16 QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVC 75 QLSF L AQ A TPA + +LRETTFVVVDLETTG R + DAITEIGAVKV Sbjct 9 QLSFVQL-QAQLEA-TPAAK-ALRETTFVVVDLETTGARASPGVDGAVDAITEIGAVKVR 65 Query 76 GGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAG--------- 126 GG V GEFATL+NPQ IPPQIVRLTGITTAMV +APTIDAVLPMF EFAG Sbjct 66 GGVVEGEFATLINPQRGIPPQIVRLTGITTAMVHDAPTIDAVLPMFLEFAGLGSARKGGD 125 Query 127 DSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLF 186 D+VLVAHNAGFD+GFL AAA+RC + WP+P VLCT+RLARRVLSR+EAPSVRLA LARLF Sbjct 126 DTVLVAHNAGFDVGFLTAAAQRCGLGWPRPPVLCTVRLARRVLSREEAPSVRLAELARLF 185 Query 187 AVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETL 246 AV++ PTHRALDDARATVDVLHALIERVGNQ VHT+A+LR+YL + T AQR KR LAE L Sbjct 186 AVSTTPTHRALDDARATVDVLHALIERVGNQRVHTFADLRAYLSHATPAQRRKRTLAEAL 245 Query 247 PHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHP 306 PHRPGVYLFRGPS EVLY+GTA DLRRR YFNG+DRR R+TEMV LA+ IDHVECAHP Sbjct 246 PHRPGVYLFRGPSDEVLYIGTATDLRRRAGGYFNGSDRRSRITEMVALATRIDHVECAHP 305 Query 307 LEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRS 366 LEAGV ELR+L+ HAPPYNRRSKFP RWWW+ L+ EAFPRLSV+RAPRHDRV+GPFRSR+ Sbjct 306 LEAGVHELRLLAAHAPPYNRRSKFPRRWWWITLSQEAFPRLSVVRAPRHDRVIGPFRSRA 365 Query 367 KAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAA 426 AA TAALLAR TG+RTCTTRL+R+ RH CP EVS CPAA D+TAAQYA V RAAA Sbjct 366 DAAATAALLARFTGIRTCTTRLSRTGRH--TCPPAEVSPCPAAPDITAAQYAATVQRAAA 423 Query 427 LIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIA 486 LI G DN+AL +AV QVT LA R YESAARLRDH AT IE LW QR RALAALPEL+A Sbjct 424 LIDGTDNSALRSAVHQVTALAARGHYESAARLRDHAATTIEILWRSQRARALAALPELVA 483 Query 487 AKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVE 546 A PDG GG++LAVIRHG+LAAAG APRGVPPMPVVDAI GAQA+ P PAP GGALVE Sbjct 484 AAPDG--TGGWRLAVIRHGRLAAAGNAPRGVPPMPVVDAITLGAQAVRPEPAPAGGALVE 541 Query 547 EIALIARWLAEPGVRIVGVSN--DAAGLASPVRSAGPWAAWAATARSAQLAGEQLSRGWQ 604 E ALIARWLA PGVRIV V + G A P+ SAG W AWAA ARSA+LA Sbjct 542 ETALIARWLAAPGVRIVRVEGAAEGGGWAEPLASAGAWMAWAAQARSARLA--------- 592 Query 605 SDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 S+L E P+ EQLFGRT V R QP+LPGRQPFS AG Sbjct 593 SELSAEADPTSEQLFGRTAVYRRDSALQPVLPGRQPFSAAG 633 >gi|126435878|ref|YP_001071569.1| hypothetical protein Mjls_3300 [Mycobacterium sp. JLS] gi|126235678|gb|ABN99078.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. JLS] Length=630 Score = 808 bits (2088), Expect = 0.0, Method: Compositional matrix adjust. Identities = 433/646 (68%), Positives = 488/646 (76%), Gaps = 28/646 (4%) Query 8 AMGATGGT--QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDA 65 ++GA GG QLSF D+ + +SLR+TTFVVVDLETTGGR TG PDA Sbjct 5 SVGAVGGAAEQLSF-DM-----------EALSLRDTTFVVVDLETTGGRATGER---PDA 49 Query 66 ITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFA 125 ITEIGAVKV GG VLGE ATLV+P +IPPQIV LTGITTAMV AP I++VLP F EFA Sbjct 50 ITEIGAVKVRGGEVLGELATLVDPGRAIPPQIVSLTGITTAMVCAAPRIESVLPAFLEFA 109 Query 126 GDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARL 185 SVLVAHNAGFDIGFLRAAA +C +TWP+P VLCT++LARRVL+RDEAPSVRL+ALA+L Sbjct 110 RGSVLVAHNAGFDIGFLRAAAEQCGLTWPRPPVLCTVKLARRVLTRDEAPSVRLSALAQL 169 Query 186 FAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAET 245 F + PTHRALDDARATVDVLH LIER+GNQGVHTY +LR+YLP+VT AQR R LA+ Sbjct 170 FRAKTTPTHRALDDARATVDVLHGLIERIGNQGVHTYTDLRAYLPDVTPAQRRNRRLADG 229 Query 246 LPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAH 305 LPHRPGVYLFRGP EVLY+GTA DLRRRV QYF G D R RM EM LA+ +DHVECAH Sbjct 230 LPHRPGVYLFRGPGDEVLYIGTAVDLRRRVGQYFTGADPRARMKEMASLATRVDHVECAH 289 Query 306 PLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSR 365 LEAGVRELR+L+ HAPPYNRRSKFP RWWWV LTDE FPR SV+RAPRH VGPFR+R Sbjct 290 ELEAGVRELRLLAAHAPPYNRRSKFPQRWWWVVLTDEPFPRFSVVRAPRHGSAVGPFRAR 349 Query 366 SKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAA 425 + A +TA LLAR TG+RTCT RL R+ARHG AC E E+S CPA RD+ AA YA A RAA Sbjct 350 TDAVQTAELLARFTGVRTCTARLARAARHGAACAERELSPCPAPRDIDAAAYAPAHRRAA 409 Query 426 ALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELI 485 LI G D+AALAA V + LA RYESAARLRDH AT I+ LW GQRLRALA EL+ Sbjct 410 DLIEGRDDAALAAVVDGIAALAAVNRYESAARLRDHAATGIDVLWRGQRLRALADQTELV 469 Query 486 AAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALV 545 AA+PDG GG+ LAV+R+G+LAAAG A RGVPPMPVVDA+ AQ +LP PAPLGGALV Sbjct 470 AARPDG--SGGWDLAVVRYGRLAAAGCARRGVPPMPVVDALTAAAQTVLPDPAPLGGALV 527 Query 546 EEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS----- 600 EE LIARWL PGVRIV G A+P+ +AG W WA TARSA+LA EQ Sbjct 528 EETGLIARWLTSPGVRIVRCE---PGYATPIGAAGRWLGWADTARSARLAAEQTGADART 584 Query 601 -RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 S+L EPHP+REQLFGRTGV+ P Q LPGR PF AG Sbjct 585 RESVPSELLGEPHPTREQLFGRTGVNGLGRPGQARLPGRHPFGVAG 630 >gi|145223545|ref|YP_001134223.1| hypothetical protein Mflv_2958 [Mycobacterium gilvum PYR-GCK] gi|145216031|gb|ABP45435.1| DNA polymerase III, epsilon subunit [Mycobacterium gilvum PYR-GCK] Length=617 Score = 807 bits (2084), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/631 (68%), Positives = 487/631 (78%), Gaps = 17/631 (2%) Query 16 QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVC 75 QLSF+D+ P + +LRETTFVVVDLETTGGR +G+ DAITEIGAVKV Sbjct 3 QLSFSDV--------DPRADPTLRETTFVVVDLETTGGRASGDRH---DAITEIGAVKVR 51 Query 76 GGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA 135 GG VLGEFATLV+P +IPPQIV LTGIT+AMV +AP I++VLP F EF +VLVAHNA Sbjct 52 GGEVLGEFATLVDPGRAIPPQIVALTGITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNA 111 Query 136 GFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHR 195 GFD+GFLRAAA R + WP+P VLCT+ LARRVL+RDEAPSV+L+ALARLF ++ PTHR Sbjct 112 GFDMGFLRAAAERNQVPWPKPPVLCTVALARRVLTRDEAPSVKLSALARLFGASTTPTHR 171 Query 196 ALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLF 255 ALDDARATVDVLHALIERVGNQGVHTYAELR+YLP+VT AQR KR LA +LP PGVYLF Sbjct 172 ALDDARATVDVLHALIERVGNQGVHTYAELRAYLPDVTPAQRRKRHLAHSLPRSPGVYLF 231 Query 256 RGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELR 315 RGPS EVLYVGTA DLRRRV QYFNG D R RM EM LA+++DHVECAH LEAGVRELR Sbjct 232 RGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECAHDLEAGVRELR 291 Query 316 MLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALL 375 +L+ HAPPYNRRSKFP+RWWWV LTDE FPR S +R PR D VGPFRSR++A + AAL+ Sbjct 292 LLAAHAPPYNRRSKFPHRWWWVTLTDEPFPRFSTVRTPRTDSAVGPFRSRAEAFDAAALM 351 Query 376 ARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALIGGLDNAA 435 AR TG+RTCT RL R A HGP CPE EVS CPA RD A YA AV A ALI G D Sbjct 352 ARFTGVRTCTNRLGRKAFHGPTCPEREVSPCPAVRDADAQTYAAAVADARALIDGRDGRP 411 Query 436 LAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREG 495 LAAA+ + +LAER RYE+AARLRDH A I+ LW GQRLRAL+ +PEL+AAKPDG R Sbjct 412 LAAALSHIADLAERNRYETAARLRDHAAATIDVLWRGQRLRALSTIPELVAAKPDGDR-- 469 Query 496 GYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWL 555 G+ LAV+RHGQLA+AG APRGVPPMPVVDA+ AQ++LP P PLGGALVEE ALIARWL Sbjct 470 GWHLAVVRHGQLASAGVAPRGVPPMPVVDALTAAAQSVLPGPGPLGGALVEETALIARWL 529 Query 556 AEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLSRG-WQSDLPTEPHPS 614 + GVRIV AG SP+ +AG WA WAATARSA+LA EQLS S+L EPHP+ Sbjct 530 GQAGVRIVRAD---AGYCSPIAAAGRWAHWAATARSARLAAEQLSASRLGSELLGEPHPT 586 Query 615 REQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 REQLFGR GVD P + LP P AG Sbjct 587 REQLFGRPGVDRLLRPRETGLPRGNPLGVAG 617 >gi|315443891|ref|YP_004076770.1| exonuclease, DNA polymerase III subunit epsilon family [Mycobacterium sp. Spyr1] gi|315262194|gb|ADT98935.1| exonuclease, DNA polymerase III, epsilon subunit family [Mycobacterium sp. Spyr1] Length=617 Score = 806 bits (2082), Expect = 0.0, Method: Compositional matrix adjust. Identities = 429/631 (68%), Positives = 486/631 (78%), Gaps = 17/631 (2%) Query 16 QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVC 75 QLSF+D+ P + +LRETTFVVVDLETTGGR +G+ DAITEIGAVKV Sbjct 3 QLSFSDV--------DPRADPTLRETTFVVVDLETTGGRASGDRH---DAITEIGAVKVR 51 Query 76 GGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA 135 GG VLGEFATLV+P +IPPQIV LTGIT+AMV +AP I++VLP F EF +VLVAHNA Sbjct 52 GGEVLGEFATLVDPGRAIPPQIVALTGITSAMVYDAPRIESVLPSFLEFCRGAVLVAHNA 111 Query 136 GFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHR 195 GFD+GFLRAAA R + WP+P VLCT+ LARRVL+RDEAPSV+L+ALARLF ++ PTHR Sbjct 112 GFDMGFLRAAAERNQVPWPKPPVLCTVALARRVLTRDEAPSVKLSALARLFGASTTPTHR 171 Query 196 ALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLF 255 ALDDARATVDVLHALIERVGNQGVHTYAELR+YLP+VT AQR KR LA +LP PGVYLF Sbjct 172 ALDDARATVDVLHALIERVGNQGVHTYAELRAYLPDVTPAQRRKRHLAHSLPRSPGVYLF 231 Query 256 RGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELR 315 RGPS EVLYVGTA DLRRRV QYFNG D R RM EM LA+++DHVECAH LEAGVRELR Sbjct 232 RGPSAEVLYVGTAVDLRRRVGQYFNGADPRTRMKEMASLATAVDHVECAHDLEAGVRELR 291 Query 316 MLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALL 375 +L+ HAPPYNRRSKFP+RWWWV LTDE FPR S +R PR D VGPFRSR+ A + AAL+ Sbjct 292 LLAAHAPPYNRRSKFPHRWWWVTLTDEPFPRFSTVRTPRTDSAVGPFRSRADAFDAAALM 351 Query 376 ARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALIGGLDNAA 435 AR TG+RTCT RL R A HGP CPE EVS CPA RD A YA AV A ALI G D Sbjct 352 ARFTGVRTCTNRLGRKAFHGPTCPEREVSPCPAVRDADAQTYAAAVADARALIDGRDGRP 411 Query 436 LAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREG 495 LAAA+ + +LAER RYE+AARLRDH A I+ LW GQRLRAL+ +PEL+AAKPDG R Sbjct 412 LAAALSHIADLAERNRYETAARLRDHAAATIDVLWRGQRLRALSTIPELVAAKPDGDR-- 469 Query 496 GYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWL 555 G+ LAV+RHGQLA+AG APRGVPPMPVVDA+ AQ++LP P PLGGALVEE ALIARWL Sbjct 470 GWHLAVVRHGQLASAGVAPRGVPPMPVVDALTAAAQSVLPGPGPLGGALVEETALIARWL 529 Query 556 AEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLSRG-WQSDLPTEPHPS 614 + GVRIV AG SP+ +AG WA WAATARSA+LA EQLS S+L EPHP+ Sbjct 530 GQAGVRIVRAD---AGYCSPIAAAGRWAHWAATARSARLAAEQLSASRLGSELLGEPHPT 586 Query 615 REQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 REQLFGR GVD P + LP P AG Sbjct 587 REQLFGRPGVDRLLRPRETGLPRGNPLGVAG 617 >gi|108800255|ref|YP_640452.1| hypothetical protein Mmcs_3289 [Mycobacterium sp. MCS] gi|119869383|ref|YP_939335.1| hypothetical protein Mkms_3351 [Mycobacterium sp. KMS] gi|108770674|gb|ABG09396.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. MCS] gi|119695472|gb|ABL92545.1| DNA polymerase III, epsilon subunit [Mycobacterium sp. KMS] Length=630 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 432/646 (67%), Positives = 486/646 (76%), Gaps = 28/646 (4%) Query 8 AMGATGGT--QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDA 65 ++GA GG QLSF D+ + +SLR+TTFVVVDLETTGGR TG PDA Sbjct 5 SVGAVGGAAEQLSF-DM-----------EALSLRDTTFVVVDLETTGGRATGER---PDA 49 Query 66 ITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFA 125 ITEIGAVKV GG VLGE ATLV+P +IPPQIV LTGITTAMV AP I++VLP F EFA Sbjct 50 ITEIGAVKVRGGEVLGELATLVDPGRAIPPQIVSLTGITTAMVCAAPRIESVLPAFLEFA 109 Query 126 GDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARL 185 SVLVAHNAGFDIGFLRAAA +C +TWP+P VLCT++LARRVL+RDEAPSVRL+ALA+L Sbjct 110 RGSVLVAHNAGFDIGFLRAAAEQCALTWPRPPVLCTVKLARRVLTRDEAPSVRLSALAQL 169 Query 186 FAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAET 245 F + PTHRALDDARATVDVLH LIER+GNQGVHTY +LR+YLP+VT AQR R LA+ Sbjct 170 FRAKTTPTHRALDDARATVDVLHGLIERIGNQGVHTYTDLRAYLPDVTPAQRRNRRLADG 229 Query 246 LPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAH 305 LPHRPGVYLFRGP EVLY+GTA DLRRRV QYF G D R RM EM LA+ +DHVECAH Sbjct 230 LPHRPGVYLFRGPGDEVLYIGTAVDLRRRVGQYFTGADPRARMKEMASLATRVDHVECAH 289 Query 306 PLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSR 365 LEAGVRELR+L+ HAPPYNRRSKFP RWWWV LTDE FPR SV+RAPRH VGPFR+R Sbjct 290 ELEAGVRELRLLAAHAPPYNRRSKFPQRWWWVVLTDEPFPRFSVVRAPRHGSAVGPFRAR 349 Query 366 SKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAA 425 + A +TA LLAR TG+RTCT RL R+ARHG AC E E+S CPA RD+ AA YA A RAA Sbjct 350 TDAVQTAELLARFTGVRTCTARLARAARHGAACAERELSPCPAPRDIDAAAYAPAHRRAA 409 Query 426 ALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELI 485 LI G D+AALAA V + LA RYESAARLRDH AT I+ LW GQRLRALA EL+ Sbjct 410 DLIEGRDDAALAAVVDGIAALAAVNRYESAARLRDHAATGIDVLWRGQRLRALADQTELV 469 Query 486 AAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALV 545 AA+PDG GG+ LAV+R+G+LAAAG A RGVPPMPVVDA+ AQ +LP PAPLGGALV Sbjct 470 AARPDG--SGGWDLAVVRYGRLAAAGCARRGVPPMPVVDALTAAAQTVLPDPAPLGGALV 527 Query 546 EEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLAGEQLS----- 600 EE LI RWL PGVRIV G A+P+ +AG W WA TARSA+LA EQ Sbjct 528 EETGLITRWLTSPGVRIVRCE---PGYATPIGAAGRWLGWADTARSARLAAEQTGADART 584 Query 601 -RGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 S+L EPHP+REQLFGR GVD P Q LPGR PF AG Sbjct 585 RESVPSELLGEPHPTREQLFGRPGVDGLGRPGQARLPGRHPFGVAG 630 >gi|118471901|ref|YP_888535.1| hypothetical protein MSMEG_4259 [Mycobacterium smegmatis str. MC2 155] gi|118173188|gb|ABK74084.1| DNA polymerase III, epsilon subunit [Mycobacterium smegmatis str. MC2 155] Length=672 Score = 759 bits (1960), Expect = 0.0, Method: Compositional matrix adjust. Identities = 419/650 (65%), Positives = 481/650 (74%), Gaps = 28/650 (4%) Query 4 PNVAAMGATG---GTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 PNV AM G QLS D+ + ++SL +TTFVVVDLETTGGR A Sbjct 43 PNVIAMSQRSTAVGAQLSL-DMELER--------DVSLADTTFVVVDLETTGGRA---KA 90 Query 61 TPP----DAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDA 116 T P DAITEIGAVKV GG VLGE ATLV+P +IPPQIV LTGITTAMV +AP IDA Sbjct 91 TAPGGLCDAITEIGAVKVRGGEVLGELATLVDPGRAIPPQIVELTGITTAMVRDAPRIDA 150 Query 117 VLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPS 176 VLPMF EFA +VLVAHNAGFDIGFLRAAA R +TWP+P VLCT++LARRVL+RDEAPS Sbjct 151 VLPMFLEFARGAVLVAHNAGFDIGFLRAAAERTQLTWPRPPVLCTVKLARRVLTRDEAPS 210 Query 177 VRLAALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQ 236 VRL+ LARLF ++ PTHRALDDARATVDVLH LIERVGNQGVHT A+LR+YLP+ T AQ Sbjct 211 VRLSELARLFGASTTPTHRALDDARATVDVLHGLIERVGNQGVHTLADLRAYLPDTTPAQ 270 Query 237 RCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLAS 296 R R LA+ LP+RPGVYLFRGPS EVLYVGTA DLRRRV QYF G D R RM EM LA+ Sbjct 271 RRNRALADGLPNRPGVYLFRGPSDEVLYVGTAVDLRRRVRQYFTGADPRARMKEMASLAT 330 Query 297 SIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHD 356 +DHVECAH LEAGVRELR+L+ HAPPYNRRSK P RWWWVALTDE FPRLS +R PRH Sbjct 331 RVDHVECAHDLEAGVRELRLLAAHAPPYNRRSKAPKRWWWVALTDEPFPRLSAVRDPRHR 390 Query 357 RVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQ 416 + +GPF +RS A ETA LLAR TG+RTCT+R + H CPE E+S CPA + A + Sbjct 391 KAIGPFSARSDAVETADLLARFTGVRTCTSRFGATGIH--RCPERELSPCPATQSAGADE 448 Query 417 YAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLR 476 YA A RAA LI G D+A LA + + +LA RYE AAR+RDH A AI+ LW GQRL+ Sbjct 449 YAAAARRAADLIDGADSAVLADVLMHIEKLAADSRYEKAARVRDHAAVAIDTLWRGQRLQ 508 Query 477 ALAALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPT 536 L +LPEL+AA+ DG GG+ AV+R+GQLA AG A RGVPPMPVVDAI AQ ++PT Sbjct 509 TLTSLPELVAARRDG--NGGWHFAVVRYGQLAGAGTARRGVPPMPVVDAICAAAQVVMPT 566 Query 537 PAPLGGALVEEIALIARWLAEPGVRIVGVSNDA-AGLASPVRSAGPWAAWAATARSAQLA 595 PLGGALVEE ALIARWLA P VRIV + G A+P+ +AG +A WAATARSA+LA Sbjct 567 AEPLGGALVEETALIARWLAAPDVRIVRTAGQTDMGWATPIGAAGRYAQWAATARSARLA 626 Query 596 GEQLSRGWQSDLPTEPHPSREQLFGRTGVDCRTGPPQPLLPGRQPFSTAG 645 Q +S+L TEPHP+REQLFGRTGVD G + LP R+P S AG Sbjct 627 ALQD----RSELLTEPHPTREQLFGRTGVDGLDGTRETGLPRRKPLSVAG 672 >gi|169629058|ref|YP_001702707.1| hypothetical protein MAB_1971c [Mycobacterium abscessus ATCC 19977] gi|169241025|emb|CAM62053.1| Probable DNA polymerase III epsilon subunit [Mycobacterium abscessus] Length=600 Score = 630 bits (1624), Expect = 3e-178, Method: Compositional matrix adjust. Identities = 346/567 (62%), Positives = 399/567 (71%), Gaps = 17/567 (2%) Query 21 DLAHAQGAAWTPADEM-SLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAV 79 D HA G + DE+ +LR+TTFVVVDLETTGG DAITEIGAVKV GG V Sbjct 5 DALHASGPSQLTFDEVGTLRDTTFVVVDLETTGGSAEN------DAITEIGAVKVRGGEV 58 Query 80 LGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDI 139 LGE ATLV+PQ S+PPQIVRLTGIT+AM+ +AP I VLP F EFA +VLVAHNAGFDI Sbjct 59 LGELATLVDPQRSLPPQIVRLTGITSAMLVDAPPIAQVLPAFLEFARGAVLVAHNAGFDI 118 Query 140 GFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDD 199 GFL+AAAR+C I WPQP VLCT+RLARRVLSRDEAP V L ALA+L ++ P HRALDD Sbjct 119 GFLKAAARQCGIDWPQPAVLCTVRLARRVLSRDEAPRVSLGALAQLLGASTTPNHRALDD 178 Query 200 ARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPS 259 ARATVDVLHALI RVGNQGV T ELR Y V A R KR LA+ +P+ PGVYLFRGPS Sbjct 179 ARATVDVLHALISRVGNQGVGTMDELRRYRTQVPSALRGKRRLADAMPYAPGVYLFRGPS 238 Query 260 GEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLST 319 GEVLYVGTA +LRRRV QYF G D R RM EMV +A+++DHV CAHPLEA VRELR+L Sbjct 239 GEVLYVGTAVNLRRRVQQYFTGADPRGRMREMVTIATAVDHVICAHPLEAAVRELRLLGA 298 Query 320 HAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCT 379 HAPPYNR+S+FP+RWWWV LT+E FPR SV+R +GPFR+R A A +LAR T Sbjct 299 HAPPYNRKSRFPHRWWWVVLTEEPFPRFSVVRTTNGRPTLGPFRARGDATTAALVLARFT 358 Query 380 GLRTCTTRLTRSARHGPAC-----PELEVSACPAARDVTAAQYAEAVLRAAALIGGLDNA 434 G+RTCT R+ RHG AC P S CPAA V A Y + + A++ G Sbjct 359 GVRTCTNRIGAGGRHGSACDGQSYPHDTASPCPAAAGVDATVYRDGLAPMLAVLDGTHGQ 418 Query 435 ALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPRE 494 L A +V EL +RRYE+AAR RD IE L RL ALA + ELIAA+PDG E Sbjct 419 PLQAMCDRVAELGAQRRYETAARQRDATTALIEVLARQHRLHALARIEELIAARPDG--E 476 Query 495 GGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARW 554 GG+Q+AV+RHGQLA A A RGVPPMPVV A AQ +LPTP P GGA EE LI RW Sbjct 477 GGWQIAVVRHGQLAGAAVARRGVPPMPVVAAASASAQVVLPTPEPFGGAAPEETGLITRW 536 Query 555 LAEPGVRIVGVSN---DAAGLASPVRS 578 LAEPGVRIV ++ +A G A+ +R Sbjct 537 LAEPGVRIVSSTDGYAEATGCAASLRD 563 >gi|226307078|ref|YP_002767038.1| DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] gi|226186195|dbj|BAH34299.1| putative DNA polymerase III epsilon subunit [Rhodococcus erythropolis PR4] Length=586 Score = 625 bits (1612), Expect = 8e-177, Method: Compositional matrix adjust. Identities = 340/580 (59%), Positives = 400/580 (69%), Gaps = 26/580 (4%) Query 14 GTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVK 73 G QLSF +L + L ETTFVVVDLETTGG + D+ITEIGAVK Sbjct 24 GRQLSFDEL------------DTPLSETTFVVVDLETTGG------SADQDSITEIGAVK 65 Query 74 VCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAH 133 + GG VLGE ATLV+P SIPP IV LTGITTAM+ AP I+ VLP F EFA +VLVAH Sbjct 66 IRGGEVLGEMATLVDPGRSIPPYIVELTGITTAMLIGAPPIERVLPAFLEFAEGAVLVAH 125 Query 134 NAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPT 193 NA FDIGFL+AAA R WP +VLCT++LARRVL+RDEAPSV+L+ALA LF V + PT Sbjct 126 NAPFDIGFLKAAASRSARPWPSFRVLCTVKLARRVLTRDEAPSVKLSALAHLFQVTTQPT 185 Query 194 HRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVY 253 HRALDDARATVDVLH LI+RVGNQGVH+Y+EL YLPN++ QR KR A LP PGVY Sbjct 186 HRALDDARATVDVLHGLIDRVGNQGVHSYSELVDYLPNISSHQRAKRSFAANLPRSPGVY 245 Query 254 LFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRE 313 LFRGPS E LY+GTA DLRRRV YF G++ R RM EMV LA+ +DHVECAH LEAGVRE Sbjct 246 LFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECAHALEAGVRE 305 Query 314 LRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAA 373 LR+LS HAPPYNRRSKFP R WW+ LTDEAFPRLSV+R P D +GPF SR A E A Sbjct 306 LRLLSAHAPPYNRRSKFPKRGWWITLTDEAFPRLSVVRTPTADS-IGPFTSRGDAVEVAD 364 Query 374 LLARCTGLRTCTTRLTRSARHGPACPELEVSACPA--ARDVTAAQYAEAVLRAAALIGGL 431 +A + LRTCT RL R A HGP CP E+ ACPA A ++TA YA A G Sbjct 365 TVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWAPELTAQDYAAAPETVRGFFRGT 424 Query 432 DNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDG 491 ++A L ++ EL+E +E+AARLRD A+ QRL A+AA+ +LI A+P G Sbjct 425 NDAPLQQMQARIDELSEHALFENAARLRDRTVAVSTAVRRTQRLAAVAAIEQLILARPTG 484 Query 492 PREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALI 551 +GG++L+VIR G+LA+AG A RG PMPVVDAI A+ +LP AP GA EE+ LI Sbjct 485 --DGGWELSVIRSGRLASAGLARRGTHPMPVVDAITAAAETVLPDDAPFRGASPEELGLI 542 Query 552 ARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARS 591 ARWLA GVRIV ++ G P AG W AW AR+ Sbjct 543 ARWLASDGVRIVSATS---GYVEPAGGAGKWEAWCRLARA 579 >gi|325676936|ref|ZP_08156608.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] gi|325552236|gb|EGD21926.1| DNA polymerase III epsilon subunit [Rhodococcus equi ATCC 33707] Length=577 Score = 617 bits (1592), Expect = 1e-174, Method: Compositional matrix adjust. Identities = 352/580 (61%), Positives = 410/580 (71%), Gaps = 25/580 (4%) Query 14 GTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVK 73 G QL+F +L + LRETTFVVVDLETTGG ++ DAITEIGAVK Sbjct 12 GLQLTFDEL------------DTPLRETTFVVVDLETTGG------SSESDAITEIGAVK 53 Query 74 VCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAH 133 V GG VLGE TLV+P +IPP IV LTGITTAMV AP ID VLP F EFAG +VLVAH Sbjct 54 VRGGEVLGELGTLVDPGRAIPPYIVELTGITTAMVRTAPRIDTVLPAFLEFAGGAVLVAH 113 Query 134 NAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPT 193 NAGFD+GFL+AAA R + WP+ QVLCT++LARRVL RDEAPSV+L+ALA L + PT Sbjct 114 NAGFDVGFLKAAAARQGLPWPKFQVLCTVKLARRVLGRDEAPSVKLSALAALLGADTTPT 173 Query 194 HRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVY 253 HRALDDARATVDVLHALI RVGNQGVH+ EL YLP V+ QR KR LA LP PGVY Sbjct 174 HRALDDARATVDVLHALIGRVGNQGVHSLPELLDYLPRVSSEQRAKRTLASHLPRSPGVY 233 Query 254 LFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRE 313 LFRGPS EVLYVGTA+DLRRRV YF G++ R RM EMV LA+ +DHVECAHPLEAGVRE Sbjct 234 LFRGPSDEVLYVGTASDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECAHPLEAGVRE 293 Query 314 LRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAA 373 LR+LS H PPYNRRSKFP R WWV LTDEAFPRLSV+R P D +GPFRSR+ A + AA Sbjct 294 LRLLSAHVPPYNRRSKFPMRGWWVTLTDEAFPRLSVVRTPTAD-ALGPFRSRTDATDAAA 352 Query 374 LLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALIGGLDN 433 +A GLRTCTTR+ + RHGP CP ++ CPA D Y A A ALI G D+ Sbjct 353 TVAEFCGLRTCTTRIGKGQRHGPKCPPRDIGGCPAIAD-DEEGYRVAPETARALIRGEDD 411 Query 434 AALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPR 493 A L A ++ ELA +ESAARLRD +A AL QRL ALAA+ EL+AA+P P Sbjct 412 APLRRARARIEELAAAELFESAARLRDRVAILGLALRRVQRLAALAAVDELVAARP-AP- 469 Query 494 EGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIAR 553 EGG++ AV+R G+LA+AG + RGV PMPVV+A+ A+ +LP P PL GA EE+A+IAR Sbjct 470 EGGWEFAVVRAGRLASAGVSRRGVAPMPVVEALVASAETVLPDPVPLRGASPEELAVIAR 529 Query 554 WLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQ 593 WL GVRIV S+ G + P AG W W AR+A+ Sbjct 530 WLDADGVRIVRTSH---GWSEPAHGAGSWEDWCTLARTAR 566 >gi|312140182|ref|YP_004007518.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] gi|311889521|emb|CBH48838.1| DNA polymerase III epsilon subunit [Rhodococcus equi 103S] Length=577 Score = 617 bits (1592), Expect = 1e-174, Method: Compositional matrix adjust. Identities = 352/580 (61%), Positives = 409/580 (71%), Gaps = 25/580 (4%) Query 14 GTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVK 73 G QL+F +L + LRETTFVVVDLETTGG ++ DAITEIGAVK Sbjct 12 GLQLTFDEL------------DTPLRETTFVVVDLETTGG------SSESDAITEIGAVK 53 Query 74 VCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAH 133 V GG VLGE TLV+P +IPP IV LTGITTAMV AP ID VLP F EFAG +VLVAH Sbjct 54 VRGGEVLGELGTLVDPGRAIPPYIVELTGITTAMVRTAPRIDTVLPAFLEFAGGAVLVAH 113 Query 134 NAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPT 193 NAGFD+GFL+AAA R + WP+ QVLCT++LARRVL RDEAPSV+L+ALA L + PT Sbjct 114 NAGFDVGFLKAAAARQGLPWPKFQVLCTVKLARRVLGRDEAPSVKLSALAALLGADTTPT 173 Query 194 HRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVY 253 HRALDDARATVDVLHALI RVGNQGVH+ EL YLP VT QR KR LA LP PGVY Sbjct 174 HRALDDARATVDVLHALIGRVGNQGVHSLPELLDYLPRVTSEQRAKRTLASHLPRSPGVY 233 Query 254 LFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRE 313 LFRGPS EVLYVGTA+DLRRRV YF G++ R RM EMV LA+ +DHVECAHPLEAGVRE Sbjct 234 LFRGPSDEVLYVGTASDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECAHPLEAGVRE 293 Query 314 LRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAA 373 LR+LS H PPYNRRSKFP R WWV LTDE FPRLSV+R P D +GPFRSR+ A + AA Sbjct 294 LRLLSAHVPPYNRRSKFPMRGWWVTLTDEVFPRLSVVRTPTAD-ALGPFRSRTDATDAAA 352 Query 374 LLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALIGGLDN 433 +A GLRTCTTR+ + RHGP CP ++ CPA D Y A A ALI G D+ Sbjct 353 AVAEFCGLRTCTTRIGKGQRHGPKCPPRDIGGCPAIAD-DEEGYRVAPETARALIRGEDD 411 Query 434 AALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPR 493 A L A ++ ELA +ESAARLRD +A AL QRL ALAA+ EL+AA+P P Sbjct 412 APLRRARARIEELAAAELFESAARLRDRVAILGLALRRVQRLAALAAVDELVAARP-AP- 469 Query 494 EGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIAR 553 EGG++ AV+R G+LA+AG + RGV PMPVV+A+ A+ +LP P PL GA EE+A+IAR Sbjct 470 EGGWEFAVVRAGRLASAGVSRRGVAPMPVVEALVASAETVLPDPVPLRGASPEELAVIAR 529 Query 554 WLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQ 593 WL GVRIV S+ G + P AG W W AR+A+ Sbjct 530 WLDADGVRIVRTSH---GWSEPAHGAGSWEDWCTLARTAR 566 >gi|229490475|ref|ZP_04384316.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] gi|229322765|gb|EEN88545.1| DNA polymerase III, epsilon subunit [Rhodococcus erythropolis SK121] Length=608 Score = 614 bits (1583), Expect = 2e-173, Method: Compositional matrix adjust. Identities = 336/580 (58%), Positives = 401/580 (70%), Gaps = 26/580 (4%) Query 14 GTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVK 73 G QLSF +L + L ETTFVVVDLETTGG + D+ITEIGAVK Sbjct 46 GRQLSFDEL------------DTPLSETTFVVVDLETTGG------SADQDSITEIGAVK 87 Query 74 VCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAH 133 + GG VLGE ATLV+P SIPP IV LTGITTAM+ AP I+ VLP F EFA +VLVAH Sbjct 88 IRGGEVLGEMATLVDPGRSIPPYIVELTGITTAMLIGAPPIERVLPAFLEFAEGAVLVAH 147 Query 134 NAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPT 193 NA FDIGFL+AAA R WP +VLCT++LARRVL+RDEAPSV+L+ALA LF V + PT Sbjct 148 NAPFDIGFLKAAASRSARPWPAFRVLCTVKLARRVLTRDEAPSVKLSALAHLFQVTTQPT 207 Query 194 HRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVY 253 HRALDDARATVDVLH LI+RVGNQGVH+Y+EL YLPN++ QR KR A LP PGVY Sbjct 208 HRALDDARATVDVLHGLIDRVGNQGVHSYSELVDYLPNISSHQRAKRSFAANLPRSPGVY 267 Query 254 LFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRE 313 LFRGPS E LY+GTA DLRRRV YF G++ R RM EMV LA+ +DHVECAH LEAGVRE Sbjct 268 LFRGPSDEALYIGTATDLRRRVRNYFTGSETRGRMKEMVALATRVDHVECAHALEAGVRE 327 Query 314 LRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAA 373 LR+LS HAPPYNRRSKFP R WW+ LTDEAFPRLSV+R P D +GPF SR+ A + A Sbjct 328 LRLLSAHAPPYNRRSKFPKRGWWITLTDEAFPRLSVVRTPTADS-IGPFTSRADAVDVAD 386 Query 374 LLARCTGLRTCTTRLTRSARHGPACPELEVSACPAAR--DVTAAQYAEAVLRAAALIGGL 431 +A + LRTCT RL R A HGP CP E+ ACPA+ ++ AA YA A G Sbjct 387 TVAEFSRLRTCTKRLGRGAVHGPDCPARELGACPASWTPEINAADYAAAPEAVRGFFRGT 446 Query 432 DNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDG 491 ++A L ++ EL+ +E+AARLRD A+ QRL A+AA+ +L+ A+P G Sbjct 447 NDAPLQQMQARIDELSAHALFENAARLRDRTVAVATAVRRTQRLAAVAAIEQLVLARPTG 506 Query 492 PREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALI 551 +GG++L+VIR G+LA+AG A RG PMPVVDAI A+ +LP AP GA EE+ LI Sbjct 507 --DGGWELSVIRSGRLASAGLARRGTHPMPVVDAITAAAETVLPDDAPFRGASPEELGLI 564 Query 552 ARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARS 591 ARWL+ GVRIV ++ G PV AG W AW AR+ Sbjct 565 ARWLSSDGVRIVSATS---GYVEPVSGAGKWEAWCRLARA 601 >gi|333918956|ref|YP_004492537.1| putative DNA polymerase III subunit epsilon [Amycolicicoccus subflavus DQS3-9A1] gi|333481177|gb|AEF39737.1| Putative DNA polymerase III epsilon subunit [Amycolicicoccus subflavus DQS3-9A1] Length=588 Score = 606 bits (1563), Expect = 3e-171, Method: Compositional matrix adjust. Identities = 323/593 (55%), Positives = 400/593 (68%), Gaps = 27/593 (4%) Query 2 QGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDAT 61 Q P A G GGTQLSF +L +LR+ TFVVVDLETTGG ++ Sbjct 12 QSPASIASG-DGGTQLSFEELG------------TTLRDITFVVVDLETTGG------SS 52 Query 62 PPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMF 121 D ITEIGAVK+ GG VLGEFATLVNP+ IPP +V++TGIT+AM+ APTI V+P F Sbjct 53 DSDRITEIGAVKIQGGEVLGEFATLVNPERDIPPYVVQITGITSAMIYQAPTIREVMPGF 112 Query 122 FEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAA 181 EFA +VLVAHNAGFD+ FL+AAA+RCD+ W P+ +CT++LARR+LS+DEAPSV+L+A Sbjct 113 LEFARGTVLVAHNAGFDMSFLKAAAQRCDLAWSFPRPVCTVKLARRILSKDEAPSVKLSA 172 Query 182 LARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRV 241 LA LF V PTHRALDDARATVDVLHAL ERVGN+G+H+ EL Y P+V R KR Sbjct 173 LADLFRVPHRPTHRALDDARATVDVLHALFERVGNKGIHSLGELTEYYPSVPSVVREKRD 232 Query 242 LAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHV 301 LA LP PGVY+FRGPS E LYVGTA +LR RV YF G+++R RM EMV LA +DHV Sbjct 233 LARHLPETPGVYIFRGPSNEALYVGTATNLRARVRSYFTGSEQRTRMREMVALAEGVDHV 292 Query 302 ECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGP 361 C+ PLEAGVRELR+L+ HAPPYNR+SK+P R WWV LTDE FPRLSV R P H + VGP Sbjct 293 ACSIPLEAGVRELRLLAAHAPPYNRKSKWPQRAWWVTLTDEPFPRLSVTRTP-HSQSVGP 351 Query 362 FRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARD--VTAAQYAE 419 F +R A + A LA GLRTCT RLT HG CP V CPAARD + A Y Sbjct 352 FPNRGTATDAAHTLAESAGLRTCTRRLTERDLHGSHCPPAPVGGCPAARDGLLAATAYRA 411 Query 420 AVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALA 479 LR A ++ G+ + L ++ +LA ++E+AARLRD A AL R+ AL Sbjct 412 TALRVAEVLAGMRDDPLTELQNRIAQLAVDEKFETAARLRDRAAHLGLALHRSHRMSALT 471 Query 480 ALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAP 539 ++ E++A +PDG GG++LA+IRHG+LAAAGRAPRG P+ +VD + A+ +LP P Sbjct 472 SIEEIVAGRPDG--RGGWELAIIRHGRLAAAGRAPRGSSPLQLVDLLTHTAETVLPDGTP 529 Query 540 LGGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSA 592 L G EE+ L+ +WL+EPG RIV ++ G P AG AW ARS+ Sbjct 530 LSGTHPEEVGLLIKWLSEPGARIVRTTH---GYCEPAHGAGKHLAWCKRARSS 579 >gi|111018139|ref|YP_701111.1| hypothetical protein RHA1_ro01126 [Rhodococcus jostii RHA1] gi|110817669|gb|ABG92953.1| DNA-directed DNA polymerase [Rhodococcus jostii RHA1] Length=588 Score = 602 bits (1552), Expect = 6e-170, Method: Compositional matrix adjust. Identities = 332/562 (60%), Positives = 391/562 (70%), Gaps = 16/562 (2%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQH 91 DE+ LR+TTFVVVDLETTG R DAITEIGAVK+ GG V+ E ATLV+P Sbjct 13 DELDTPLRDTTFVVVDLETTGARPG------EDAITEIGAVKIRGGEVIAEMATLVDPGR 66 Query 92 SIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI 151 SIPP IV +TGITTAMV +AP I+ VLP F EFA +VLVAHNA FD GFL+AAA D Sbjct 67 SIPPHIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAPFDTGFLKAAASATDT 126 Query 152 TWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALI 211 WP+ VLCT++LARRVLSRDEAPSV+L++LARLF V + PTHRALDDARATVDVLHALI Sbjct 127 PWPKFTVLCTVKLARRVLSRDEAPSVKLSSLARLFDVGTTPTHRALDDARATVDVLHALI 186 Query 212 ERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADL 271 RVGNQGVH+ EL YLP+V+ QR KR LA LPH PGVYLFRGPS EVLYVGTA DL Sbjct 187 ARVGNQGVHSLTELVDYLPDVSSHQRAKRSLAGHLPHAPGVYLFRGPSDEVLYVGTATDL 246 Query 272 RRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFP 331 RRRV YF G++ R RM EMV L + IDHVECAH LEAGVRELR+L+ H PPYNRRSK+P Sbjct 247 RRRVRNYFTGSETRGRMKEMVALTTRIDHVECAHALEAGVRELRLLAAHTPPYNRRSKYP 306 Query 332 YRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRS 391 R WW+ LT EAFPRLSV+R P D +GPFRSRS A + A +LA LRTCT+R+ + Sbjct 307 KRGWWITLTVEAFPRLSVVRTPTADS-LGPFRSRSTAVDLADVLAEYCILRTCTSRIPKG 365 Query 392 ARHGPACPELEVSACPAARDVTAAQ--YAEAVLRAAALIGGLDNAALAAAVQQVTELAER 449 HGP CP E++ CPA+ A + Y + GLD+A L QV ELA Sbjct 366 REHGPQCPPRELAGCPASVHDRATEDAYRPGPELFRQFLRGLDDAPLHRMRAQVEELAAG 425 Query 450 RRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLAA 509 +E+AARLRD A + AL QRL AL AL +L+AA+P GG++ AVIR G+LA+ Sbjct 426 ELFENAARLRDRTAEVVLALRRMQRLAALTALDQLVAARPAA--TGGWEFAVIRSGRLAS 483 Query 510 AGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSNDA 569 AG A RG+ PMPVVDA+ A+ ++P PL GA EE L+ARWL + RIV S Sbjct 484 AGCARRGIHPMPVVDALVLTAETVVPDATPLRGASPEEAGLLARWLDQEDTRIVSAS--- 540 Query 570 AGLASPVRSAGPWAAWAATARS 591 AG P R AG W+ W A AR+ Sbjct 541 AGWCEPARGAGSWSEWCALARA 562 >gi|226360268|ref|YP_002778046.1| hypothetical protein ROP_08540 [Rhodococcus opacus B4] gi|226238753|dbj|BAH49101.1| putative DNA polymerase III epsilon subunit [Rhodococcus opacus B4] Length=588 Score = 590 bits (1522), Expect = 2e-166, Method: Compositional matrix adjust. Identities = 328/563 (59%), Positives = 389/563 (70%), Gaps = 18/563 (3%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQH 91 DE+ LR+TTFVVVDLETTG R DAITEIGAVK+ GG V+ E ATLV+P Sbjct 13 DELDTPLRDTTFVVVDLETTGARPG------EDAITEIGAVKIRGGEVIAEMATLVDPGR 66 Query 92 SIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI 151 SIPP IV +TGITTAMV +AP I+ VLP F EFA +VLVAHNA FD GFL+AAA D Sbjct 67 SIPPHIVEITGITTAMVIDAPRIERVLPAFLEFARGAVLVAHNAPFDTGFLKAAAAATDT 126 Query 152 TWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALI 211 WP+ VLCT++LARRVL+RDEAPSV+L++LARL V + PTHRALDDARATVDVLHALI Sbjct 127 PWPKFTVLCTVKLARRVLTRDEAPSVKLSSLARLLDVGTTPTHRALDDARATVDVLHALI 186 Query 212 ERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADL 271 RVGNQGVH+ EL YLP+V+ QR KR LA LPH PGVYLFRGPS EVLYVGTA DL Sbjct 187 ARVGNQGVHSLTELVDYLPDVSSHQRAKRTLASHLPHAPGVYLFRGPSDEVLYVGTATDL 246 Query 272 RRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFP 331 RRRV YF G++ R RM EMV L + IDHVECAH LEAGVRELR+L+ H PPYNRRSK+P Sbjct 247 RRRVRNYFTGSETRGRMKEMVALTTRIDHVECAHALEAGVRELRLLAAHTPPYNRRSKYP 306 Query 332 YRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRS 391 R WW+ LT EAFPRLSV+R P D +GPFRSRS A + A +LA LRTCT+R+ + Sbjct 307 KRGWWITLTAEAFPRLSVVRTPAADS-LGPFRSRSTAVDVADVLAEYCILRTCTSRIPKG 365 Query 392 ARHGPACPELEVSACPAA---RDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAE 448 HG CP E+ CPA+ R+ T Y + G D+A L +V ELA Sbjct 366 REHGAQCPPRELGRCPASVHGRN-TEDAYRPGPELFRLFLRGADDAPLHRMRARVEELAA 424 Query 449 RRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLA 508 +E+AARLRD A + AL QRL AL AL +L+AA+P GG++ AVIR G+LA Sbjct 425 GELFENAARLRDRTAEVVLALRRMQRLAALTALDQLVAARPAA--TGGWEFAVIRSGRLA 482 Query 509 AAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSND 568 +AG A RG+ PMPVVDA+ A+ ++P PL GA EE L+ARWL + RIV S+ Sbjct 483 SAGCARRGIHPMPVVDALVLTAETVVPDATPLRGASPEEAGLLARWLDQDDTRIVSASS- 541 Query 569 AAGLASPVRSAGPWAAWAATARS 591 G P R AG W+AW A AR+ Sbjct 542 --GWCEPARGAGSWSAWCALARA 562 >gi|300784117|ref|YP_003764408.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|299793631|gb|ADJ44006.1| DNA polymerase III subunit epsilon [Amycolatopsis mediterranei U32] gi|340525532|gb|AEK40737.1| hypothetical protein RAM_11235 [Amycolatopsis mediterranei S699] Length=567 Score = 564 bits (1453), Expect = 2e-158, Method: Compositional matrix adjust. Identities = 318/561 (57%), Positives = 376/561 (68%), Gaps = 28/561 (4%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATP-PDAITEIGAVKVCGGAVLGEFATLVNPQ 90 DE+ LR+TTFVV DLETTG A P P ITEIGAVKV GG VLGEFATLVNP Sbjct 11 DELGTPLRDTTFVVFDLETTG-------APPGPSGITEIGAVKVRGGEVLGEFATLVNPG 63 Query 91 HSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCD 150 IPPQIV LTGIT AMV +AP I+ VLP F EF G +VLVAHN+GFD +RAA Sbjct 64 APIPPQIVSLTGITQAMVYDAPPIEEVLPAFLEFIGGAVLVAHNSGFDTSHMRAACEGHG 123 Query 151 ITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHAL 210 WP+ V+CT+RLARRV+ RDE L ALA LF + PTHRALDDARATVDVLH L Sbjct 124 YVWPKATVVCTVRLARRVVPRDEVGRYNLTALALLFGARTRPTHRALDDARATVDVLHGL 183 Query 211 IERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAAD 270 +ERVGN GVH+ EL YLP VT AQR KR LA LP PGVYLF+GP EVLYVGTA D Sbjct 184 LERVGNLGVHSLEELMGYLPEVTVAQRAKRHLAADLPSAPGVYLFKGPKDEVLYVGTAKD 243 Query 271 LRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKF 330 LRRRV YF G++ R R+ EMV LA +DHV CAH LEA VRELR+++ H P YNRRSK Sbjct 244 LRRRVRTYFTGSENRSRIREMVALAERVDHVVCAHALEAEVRELRLIAAHRPAYNRRSKN 303 Query 331 PYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTR 390 ++ WW+ LTDEAFPRLSV+R PR V+GPFR+++ A TA LA +GLRTCT R++ Sbjct 304 RHQGWWIGLTDEAFPRLSVVRLPRPG-VLGPFRNQADARTTADTLAGASGLRTCTQRISP 362 Query 391 SARHGPACPELEVSAC--PAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAE 448 + +G C E+ C P A + A+Y AV + LI GLD L A V LAE Sbjct 363 RSANGTPCVLAELGRCGAPCAGRQSVAEYGPAVESVSGLIAGLDGGPLHTAAAHVERLAE 422 Query 449 RRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLA 508 R YE AAR RD LA I AL R +LA++ ELIAA PDG GG++L+VIR+G+LA Sbjct 423 GRHYEQAARHRDELAGLIRALGRAHRQSSLASIGELIAAAPDG--AGGWELSVIRYGRLA 480 Query 509 AAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSND 568 +AG APRGVPP+PVV+A+ A+ +LP P PL GA EE+ ++ RWLA PGVR+ Sbjct 481 SAGVAPRGVPPIPVVEALVASAETVLPDPGPLNGAPPEEVGVLLRWLARPGVRL------ 534 Query 569 AAGLASPVRSAGPWAAWAATA 589 VR+ PWA AA A Sbjct 535 -------VRTTRPWAEPAAVA 548 >gi|296140382|ref|YP_003647625.1| DNA polymerase III subunit epsilon [Tsukamurella paurometabola DSM 20162] gi|296028516|gb|ADG79286.1| DNA polymerase III, epsilon subunit [Tsukamurella paurometabola DSM 20162] Length=610 Score = 562 bits (1449), Expect = 6e-158, Method: Compositional matrix adjust. Identities = 325/606 (54%), Positives = 386/606 (64%), Gaps = 44/606 (7%) Query 31 TPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQ 90 +PA + LRE TFVVVDLETTGG G DA ITEIGAVKV GG VLGEFATLV+P+ Sbjct 10 SPAADPDLREVTFVVVDLETTGGSPKGGDA-----ITEIGAVKVRGGEVLGEFATLVDPE 64 Query 91 HSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCD 150 I P I LTGITTAMV APTI +VLP F EFA +VLVAHNA FDIGFL+AAA Sbjct 65 RGIAPHITHLTGITTAMVTGAPTIASVLPAFLEFAQGAVLVAHNARFDIGFLKAAAAATG 124 Query 151 ITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHAL 210 WP+PQ LCT++LARRVL+RDEAPSV+L+ +ARLF + PTHRALDDARATVDVLH L Sbjct 125 TPWPKPQTLCTVQLARRVLTRDEAPSVKLSEMARLFRAETTPTHRALDDARATVDVLHGL 184 Query 211 IERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAAD 270 I RVGN G+ T+AELR +LP+VT QR KR LA+ LP RPGVYLFRGP EVLYVGT+ + Sbjct 185 IGRVGNLGIRTFAELRGHLPSVTPQQRAKRGLADPLPERPGVYLFRGPGDEVLYVGTSRN 244 Query 271 LRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKF 330 LRRRV YF + R R+ EMV LA +DHVECAH LEA RELR+++ H PPYNRRSK+ Sbjct 245 LRRRVRSYFTSGETRGRIKEMVGLAERVDHVECAHALEAAARELRLIAAHTPPYNRRSKY 304 Query 331 PYRWWWVALTDEAFPRLSVIR-APRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLT 389 P R WW+ LT E FPRL+V R AP +GP RSR++AA+ A L+A GLRTCTTRL Sbjct 305 PKRGWWICLTVEPFPRLAVKRSAPAGSVCLGPIRSRTEAADLADLIAETCGLRTCTTRLR 364 Query 390 RSARHGPAC-PE--LEVSACPAARDV--TAAQYAEAVLRAAALIGGLDNAALAAAVQQVT 444 H A P+ V C + A+ Y RAAA++ G +A A ++ Sbjct 365 PGGAHACALGPDGTRPVGGCHGSVSAPEPASLYRPRADRAAAMLTGRSSAVFDALQARLD 424 Query 445 ELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRH 504 L ER +ESAARLRD A ++ L A A +PEL A PDG GG++L+++RH Sbjct 425 SLVEREFFESAARLRDRTAQLVDITLRSHSLAAFAEVPELSIAHPDG--AGGWELSIVRH 482 Query 505 GQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAP-----------------LGGALVEE 547 G+LAAAG APRGVPPMPV D +R GA+ + AP L GA EE Sbjct 483 GRLAAAGVAPRGVPPMPVFDRLRSGAETVYEADAPADQPALFVPDALFPADVLHGASPEE 542 Query 548 IALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWA-----------ATARSAQLAG 596 AL+ RW +PG RIV V P+ AG W WA A A Q +G Sbjct 543 AALLRRWALQPGTRIVEVRGT---WGEPLHGAGRWREWAERALTAGRDARAAASQPQRSG 599 Query 597 EQLSRG 602 Q S G Sbjct 600 RQYSEG 605 >gi|256375516|ref|YP_003099176.1| hypothetical protein Amir_1378 [Actinosynnema mirum DSM 43827] gi|255919819|gb|ACU35330.1| DNA polymerase III, epsilon subunit [Actinosynnema mirum DSM 43827] Length=578 Score = 554 bits (1427), Expect = 2e-155, Method: Compositional matrix adjust. Identities = 320/595 (54%), Positives = 385/595 (65%), Gaps = 27/595 (4%) Query 1 VQGPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDA 60 + G V M T QLSF +L TP LRETTFVV DLETTG R Sbjct 1 MSGVTVPGMPTTPPAQLSFDELG-------TP-----LRETTFVVFDLETTGPRAA---- 44 Query 61 TPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPM 120 D ITEIGAVKV GG V+GEF TLV+P+ IPPQIV LTGIT MV AP + +VLP Sbjct 45 --EDGITEIGAVKVRGGRVIGEFGTLVDPERGIPPQIVALTGITQNMVTGAPVLASVLPA 102 Query 121 FFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLA 180 F EFA +VLVAHN+GFD+GF++AA R WP+P V+CT++LARRVLSR+EAPS +L+ Sbjct 103 FLEFAEGAVLVAHNSGFDVGFMKAACERHGYAWPKPPVVCTVKLARRVLSREEAPSCKLS 162 Query 181 ALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKR 240 AL+ LF V P HRAL DARATV+VLH L+ERVG+ GVH+ EL +YLP+V+ QR KR Sbjct 163 ALSALFGVPEAPNHRALVDARATVEVLHRLLERVGSVGVHSLEELLAYLPDVSPQQRRKR 222 Query 241 VLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDH 300 LA LP PGVYLFRGPS EVLYVGTA+DLRRRV QYF ++ R R+ EMV LA +D Sbjct 223 SLAADLPSAPGVYLFRGPSEEVLYVGTASDLRRRVRQYFTASETRHRLREMVALAVRVDW 282 Query 301 VECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVG 360 VECAHPLEA VRELR+++ H P YNRRSK WW+ALTDEAFPRLSV+R R +G Sbjct 283 VECAHPLEAQVRELRLIAAHRPAYNRRSKNTAS-WWLALTDEAFPRLSVVRTAREG-ALG 340 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSAC--PAARDVTAAQYA 418 PF +R A A L LR C R+ G C LE+ C P A YA Sbjct 341 PFPTRRAADAAAEALLEAVPLRACAQRIPARGASGTPCALLEMGRCKAPCAGLQEVDDYA 400 Query 419 EAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRAL 478 +AV RA ALI G AL A ++ ELA R+E AA RD LA + AL GQRL AL Sbjct 401 DAVARARALIAGESTEALGGAAARLGELALEERFEEAALRRDRLAGLVRALDRGQRLAAL 460 Query 479 AALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPA 538 AA+ EL+AA+PDG GG+ AV+RHG+LA+AG APRGVPPMPVVDA+ A+ +LP Sbjct 461 AAVEELVAARPDG--AGGWWFAVVRHGRLASAGVAPRGVPPMPVVDALVASAETVLPGAG 518 Query 539 PLGGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQ 593 PL G EE+ ++ RW+ +PG R+V S A+P AG W W A + + Sbjct 519 PLLGGSAEEVGVVLRWVEQPGTRMVSCSRP---WAAPAWGAGSWRTWVGVAEAGR 570 >gi|54023690|ref|YP_117932.1| hypothetical protein nfa17220 [Nocardia farcinica IFM 10152] gi|54015198|dbj|BAD56568.1| putative DNA polymerase III subunit [Nocardia farcinica IFM 10152] Length=598 Score = 553 bits (1426), Expect = 3e-155, Method: Compositional matrix adjust. Identities = 334/575 (59%), Positives = 387/575 (68%), Gaps = 37/575 (6%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQH 91 DE+ L +TTFVVVDLETTG G DAITEIGAVKV GG VLGEFATLVNP Sbjct 16 DELDTPLYDTTFVVVDLETTGTSPEG------DAITEIGAVKVRGGEVLGEFATLVNPGR 69 Query 92 SIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI 151 +IPP +V++TGITTA+V AP I+AVLP F EFA +VLVAHNA FD FLRAAA RC + Sbjct 70 AIPPAVVQVTGITTALVYAAPRIEAVLPGFLEFAAGAVLVAHNARFDTAFLRAAAARCAL 129 Query 152 TWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALI 211 WP VLCT++LARRVL RDEAPSVRLA+LARL ++ PTHRALDDARATVDVLHALI Sbjct 130 PWPDAPVLCTVKLARRVLGRDEAPSVRLASLARLLGASTQPTHRALDDARATVDVLHALI 189 Query 212 ERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADL 271 RVGNQGVH+ EL YLP+V+ QR KR A LP PGVYLFRGPS EVLY+GTA +L Sbjct 190 ARVGNQGVHSLTELMDYLPDVSAGQRAKRSFAAGLPTAPGVYLFRGPSDEVLYIGTAVNL 249 Query 272 RRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFP 331 RRRV YF G++ R RM EMV LA+ +DHV CAH LEAGVRELR+L HAPPYNRRSKFP Sbjct 250 RRRVRTYFTGSETRGRMKEMVALATRVDHVVCAHGLEAGVRELRLLVAHAPPYNRRSKFP 309 Query 332 YRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRS 391 R WW+ LTDEAFPRL+V+R P D +GPF SR A + AA LA GLRTCTTRL RS Sbjct 310 KRVWWITLTDEAFPRLAVVRTPTPD-ALGPFTSRQDAVDVAATLAEHAGLRTCTTRLARS 368 Query 392 ARHGPACPELEVSACPAARDV--TAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAER 449 A H CP V CPAAR+ TAA+YA A L+ G + L ++ A Sbjct 369 AVHD--CPPSVVGGCPAARETPCTAAEYAPAPAAVRDLVAGRCDTVLHTMRARIDSAAAA 426 Query 450 RRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLAA 509 +E+AARLRD + + AL QRL ALA + ELIAA PDG GG++ AV+R+G+LA Sbjct 427 EHFEAAARLRDRMVAVVRALRRTQRLAALARIAELIAAHPDG--AGGWEFAVVRYGRLAG 484 Query 510 AGRAPRGVPPMPVVDAIRRGAQAILPTPA-------------------PLGGALVEEIAL 550 AG A RG PPMPVV+ I A+ ++P PL GA EE+ L Sbjct 485 AGVAARGTPPMPVVEQIVAAAETVVPDGVAGVGVPDDEVAGLAELVGPPLLGAPPEEVGL 544 Query 551 IARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAW 585 IARWL PGVRIV S+ G P AG W+ W Sbjct 545 IARWLERPGVRIVRTSH---GYHEPRCGAGRWSGW 576 >gi|134098272|ref|YP_001103933.1| hypothetical protein SACE_1689 [Saccharopolyspora erythraea NRRL 2338] gi|133910895|emb|CAM01008.1| DNA polymerase III, epsilon subunit [Saccharopolyspora erythraea NRRL 2338] Length=572 Score = 553 bits (1424), Expect = 5e-155, Method: Compositional matrix adjust. Identities = 310/584 (54%), Positives = 378/584 (65%), Gaps = 22/584 (3%) Query 12 TGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGA 71 T QLSF ++ P E+ L E TFVVVDLETTGG + DA+TEIGA Sbjct 2 TAHAQLSFDEI--------VPEVEVPLNEVTFVVVDLETTGG------SNAQDAVTEIGA 47 Query 72 VKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLV 131 VKV GG V+GEF TLV+P+ IPP +V +TGIT AMV +AP +D+VLP F EF SVLV Sbjct 48 VKVRGGEVVGEFQTLVDPERDIPPSVVTITGITEAMVRDAPRLDSVLPAFLEFCRGSVLV 107 Query 132 AHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASN 191 AHNA FD GFLRA R + WP+P+V+CT+RLARRVL+RDE P+ RL LA + + Sbjct 108 AHNAPFDTGFLRAGCERLGLRWPKPKVVCTVRLARRVLTRDETPNYRLGTLAGVLGARTE 167 Query 192 PTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPG 251 P HRALDDARATVDVLHAL+ER+G GV T +L +LP+VT QR KR LA+ LP+ G Sbjct 168 PVHRALDDARATVDVLHALLERLGPIGVRTLEDLLGHLPDVTPLQRRKRGLADALPNASG 227 Query 252 VYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGV 311 VYLFRGP+ EVLYVGTA DLRRRV QYF ++R R+ EMV LA IDHV CAHPLEA V Sbjct 228 VYLFRGPNEEVLYVGTATDLRRRVRQYFTAGEKRSRIKEMVGLAERIDHVVCAHPLEAEV 287 Query 312 RELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAET 371 RELR+L+ H P YNRRSKFP R WWV LTDE FPRLSV+R PR +GPF SR AAE Sbjct 288 RELRLLAAHQPRYNRRSKFPQRAWWVVLTDEPFPRLSVVRTPRPT-ALGPFASRRAAAEA 346 Query 372 AALLARCTGLRTCTTRLTRSARHGPACP--ELEVSACPAARDVTAAQYAEAVLRAAALIG 429 L T +R CT R+ G C EL+ A P A +A YA V+ + ++ Sbjct 347 VDALQEATKVRRCTERIPARDPRGRPCALYELQRCAAPCAGLQSAEDYAPEVIAISDVVA 406 Query 430 GLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKP 489 GL L ++ L+ +R+E AA RD LA + +L GQRL ALAA+PEL+AA+P Sbjct 407 GLGTGVLHRLRAELERLSRAQRFEDAAVHRDRLAALVRSLDRGQRLSALAAVPELVAARP 466 Query 490 DGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIA 549 DG GG+ LAV+RHG+LAAAG A RGVPPMPVVD ++ A+ + PL GA +E+ Sbjct 467 DG--RGGWHLAVVRHGRLAAAGTARRGVPPMPVVDLLQASAETVTEGAGPLRGASPDEVR 524 Query 550 LIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQ 593 ++ RWL G R+V S P R AG W W A S + Sbjct 525 VVHRWLTTGGTRMVRCSQP---WVEPARGAGAWHTWLERAVSGR 565 >gi|257055123|ref|YP_003132955.1| hypothetical protein Svir_10720 [Saccharomonospora viridis DSM 43017] gi|256584995|gb|ACU96128.1| exonuclease, DNA polymerase III, epsilon subunit family [Saccharomonospora viridis DSM 43017] Length=570 Score = 551 bits (1420), Expect = 1e-154, Method: Compositional matrix adjust. Identities = 316/564 (57%), Positives = 375/564 (67%), Gaps = 18/564 (3%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDA-ITEIGAVKVCGGAVLGEFATLVNPQ 90 DE+ LRE TFVVVDLETTG TP A ITEIGAVKV GG V+GEFATLV+P Sbjct 6 DELGTPLREVTFVVVDLETTG-------VTPDGAGITEIGAVKVRGGEVVGEFATLVDPG 58 Query 91 HSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCD 150 IPPQIV LTGIT AMV +AP I+ VLP F EF +VLVAHNAGFD+ FL+AA + Sbjct 59 VPIPPQIVALTGITPAMVRSAPRIEQVLPTFLEFVSGAVLVAHNAGFDVSFLKAACQTHG 118 Query 151 ITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHAL 210 WP+P V+CT++LARRVL R E RL+ LA LF S P HRALDDA+ATVDVLH L Sbjct 119 YEWPKPTVVCTLKLARRVLGRQETRGHRLSTLASLFGARSTPKHRALDDAKATVDVLHGL 178 Query 211 IERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAAD 270 +ERVG GV + EL YL VT AQR KR LA LP RPGVYLFRGPS EVLYVGTA + Sbjct 179 LERVGPLGVQSLEELLDYLRAVTPAQRRKRGLAAHLPERPGVYLFRGPSDEVLYVGTARN 238 Query 271 LRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKF 330 LRRRV QYF +D R R+ EMV LA +D VEC+H LEA VRELR+L+ + PPYNRRS+ Sbjct 239 LRRRVRQYFTASDNRGRIREMVALAERVDAVECSHALEAAVRELRLLAAYRPPYNRRSRN 298 Query 331 PYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTR 390 P + WWV LTDE FPRLSV+R PR D +GPF SR+ A A LA LRTCT R+ Sbjct 299 PSKVWWVVLTDEPFPRLSVVRQPR-DGALGPFTSRNSARAVADTLADLARLRTCTRRIPA 357 Query 391 SARHGPACPELEVSAC--PAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAE 448 + GP+C E+ +C P TA Y +V + LI G+D A L +Q+ L+ Sbjct 358 TGAAGPSCVLAELGSCGAPCIGAQTAEDYRLSVRLVSDLIDGVDTALLRRGHEQLDALSA 417 Query 449 RRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLA 508 + +E AAR RD L + A+ RL ALA+L EL+AA PDG GG++ AV+R+G+LA Sbjct 418 IQHFERAARRRDELVAVLRAVDKRHRLAALASLEELVAASPDG--SGGWEFAVVRYGRLA 475 Query 509 AAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSND 568 +AG A RGVPPMPVVDA+ A+ +LP P PL GA EE AL+ RWL PGVR+V S Sbjct 476 SAGVARRGVPPMPVVDALVDSAETVLPEPGPLRGANGEETALLWRWLTRPGVRLVRTS-- 533 Query 569 AAGLASPVRSAGPWAAWAATARSA 592 A A PV AG W AW A +A Sbjct 534 -APWAEPVHGAGRWRAWLDAADTA 556 >gi|326382523|ref|ZP_08204214.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] gi|326198642|gb|EGD55825.1| hypothetical protein SCNU_06275 [Gordonia neofelifaecis NRRL B-59395] Length=623 Score = 551 bits (1419), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 323/599 (54%), Positives = 399/599 (67%), Gaps = 39/599 (6%) Query 16 QLSFADLAHAQGAAWTPADEMS---LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAV 72 QLSF DL A DE + LR+TTFVVVDLETTGG + +D D ITEIGAV Sbjct 37 QLSFEDLPEA--------DEFTRSALRDTTFVVVDLETTGG--SADD----DRITEIGAV 82 Query 73 KVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVA 132 K+ GG VLGEFATLV+P +IPPQIV LTGITTAM+ +AP I+ VLP F EFA +VLVA Sbjct 83 KIRGGEVLGEFATLVDPGRAIPPQIVALTGITTAMLYDAPRIEEVLPAFAEFARGTVLVA 142 Query 133 HNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNP 192 HNA FD+GFLR +A R + WP LCT+ +ARR+LSR EAP+V+L+ALA LF V+ P Sbjct 143 HNARFDMGFLRKSAARMRLPWPFSTSLCTVVMARRILSRQEAPTVKLSALAELFQVSVRP 202 Query 193 THRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGV 252 THRALDDARATV+V H L+ERVGNQGV T +L +YLP T A R KR +A LP RPGV Sbjct 203 THRALDDARATVEVFHRLLERVGNQGVQTVGDLTAYLPRATPAMRAKRSIASGLPRRPGV 262 Query 253 YLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVR 312 YLFRGP+ EVLY+GTA DL RRVS YFNG+D R RM EMV LA +DHVECAH LEAGV Sbjct 263 YLFRGPADEVLYIGTAVDLHRRVSGYFNGSDGRARMAEMVSLAVRVDHVECAHALEAGVA 322 Query 313 ELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETA 372 EL +L H P YNRRS+ P R WW+ALT E FPRL V R+P + +GP SR+ AA+ A Sbjct 323 ELNLLGVHKPSYNRRSRNPQRGWWIALTAERFPRLRVTRSPGPES-LGPVASRAVAADVA 381 Query 373 ALLARCTGLRTCTTRLTRSARH---GPA----CPELEVSACPAA------RDVTAAQYAE 419 ++A GLRTCT L +++ H G A P+ V+A P R T Y Sbjct 382 DVIAGAAGLRTCTAELRKASHHWCEGSAQADRLPDPLVAAVPGVCRAASDRPQTVTDYLC 441 Query 420 AVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALA 479 V LI G +A + A ++V L+++ R+ESAAR R L+ IE L GQRL A+A Sbjct 442 RVEAVRELISGRSDALVVALHERVASLSQQHRFESAARARARLSATIETLARGQRLTAVA 501 Query 480 ALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAIL---PT 536 E+IAA+PDG GG++ +++R+G+LA A A RGVPPMPVV+ +R ++ P Sbjct 502 QRAEVIAARPDG--SGGWEFSLVRYGRLAGAAHARRGVPPMPVVERMRAAGTTVMPPVPE 559 Query 537 PAPLGGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQLA 595 PL GA EEIALI RWL EPG R+V V++ L+ P+ +A W +A TARSA+ A Sbjct 560 SGPLSGAPAEEIALIERWLFEPGTRLVDVTDQ---LSLPIGAAERWHDFARTARSARDA 615 >gi|302525360|ref|ZP_07277702.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] gi|302434255|gb|EFL06071.1| DNA-directed DNA polymerase [Streptomyces sp. AA4] Length=572 Score = 548 bits (1413), Expect = 8e-154, Method: Compositional matrix adjust. Identities = 309/558 (56%), Positives = 380/558 (69%), Gaps = 17/558 (3%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQH 91 DE+ LR+TTFVV DLETTG + PD ITEIGAVKV G VLGEFATLVNP Sbjct 15 DELGTPLRDTTFVVFDLETTGTKPG------PDGITEIGAVKVRAGQVLGEFATLVNPGT 68 Query 92 SIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI 151 IPPQIV LTGIT AMV +AP I+ VLP F EF +VLVAHN+GFD F++AA Sbjct 69 PIPPQIVELTGITQAMVYDAPRIERVLPAFLEFISGAVLVAHNSGFDTSFMKAACEGHGY 128 Query 152 TWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALI 211 WP+P V+CT++LARRV+ R+EA S RL++L+ L + PTHRALDDARAT DVLHAL+ Sbjct 129 VWPRPTVVCTVKLARRVIPREEARSYRLSSLSMLLGSRTRPTHRALDDARATTDVLHALL 188 Query 212 ERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADL 271 ERVGN GVHT EL YLP+VT AQR KR LA LP RPGVYLF+GP EVLYVGTA DL Sbjct 189 ERVGNLGVHTVEELIDYLPDVTPAQRRKRNLAADLPSRPGVYLFKGPRDEVLYVGTARDL 248 Query 272 RRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFP 331 RRRV YF G++ R R+ EMV LA +D +ECAH LEA +RELR+++ H P YNRRSK P Sbjct 249 RRRVRTYFTGSESRGRIREMVALAERVDAIECAHSLEAEIRELRLIAAHRPAYNRRSKNP 308 Query 332 YRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRS 391 + WW++LTDEAFPRLSV+R PR +GPFRS++ A A LA +GLRTCT R++ + Sbjct 309 HHGWWISLTDEAFPRLSVVRLPRAG-TLGPFRSQADARTAAETLADASGLRTCTQRISAT 367 Query 392 ARHGPACPELEVSAC--PAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAER 449 + G C E+ C P A T A+Y+ AV A LI G D L A ++ E++ R Sbjct 368 SASGTPCVLAELGRCGAPCAGRQTVAEYSPAVDAARGLIAGHDGRPLHLAAARLEEMSAR 427 Query 450 RRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLAA 509 R YE AAR RD LA + A+ R ALA++ ELIAA PDG GG++L+VIR+G+LA+ Sbjct 428 RHYEQAARHRDELAGLVRAVGRAHRQAALASVAELIAAAPDG--SGGWELSVIRYGRLAS 485 Query 510 AGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSNDA 569 AG A RGVPPMPVV+++ + +LP PL GA EE+ ++ RWLA PG R+V + Sbjct 486 AGVARRGVPPMPVVESLVAAGETVLPGDGPLRGAPGEEVGILLRWLARPGTRLVRTTRP- 544 Query 570 AGLASPVRSAGPWAAWAA 587 A PV AG W +W A Sbjct 545 --WAEPVAVAG-WQSWLA 559 >gi|262202943|ref|YP_003274151.1| DNA polymerase III subunit epsilon [Gordonia bronchialis DSM 43247] gi|262086290|gb|ACY22258.1| DNA polymerase III, epsilon subunit [Gordonia bronchialis DSM 43247] Length=595 Score = 545 bits (1404), Expect = 9e-153, Method: Compositional matrix adjust. Identities = 321/583 (56%), Positives = 387/583 (67%), Gaps = 19/583 (3%) Query 16 QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVC 75 QL+FADL AA + +L +TT VVVDLETTG G D ITEIGAVK+ Sbjct 13 QLTFADLD--DDAAGGGFGDRALFDTTLVVVDLETTGSDPAG------DRITEIGAVKIR 64 Query 76 GGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA 135 GG VLGEFATLV+P+ SIPPQIV LTGIT AMV AP I+ VLP F EFA S+LVAHNA Sbjct 65 GGEVLGEFATLVDPERSIPPQIVTLTGITHAMVSAAPRIEEVLPAFIEFARGSILVAHNA 124 Query 136 GFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHR 195 FD+GFLR A+R + +P P LCT+ +ARR+L R+EAP+VRL+ALA LF V+ PTHR Sbjct 125 RFDMGFLRRNAQRLHLDFPFPLSLCTVTMARRILHREEAPTVRLSALADLFDVSVRPTHR 184 Query 196 ALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLF 255 ALDDARATV+V H L+ERVGNQGVH+ +L YLP R KR LA+ +P RPGVYLF Sbjct 185 ALDDARATVEVFHHLLERVGNQGVHSIRDLTEYLPRTDPQLRAKRHLADKIPARPGVYLF 244 Query 256 RGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELR 315 RGPS EVLYVGTA DLRRRV YF G+D R+R+ EMV LA +DHVEC+H LEA VRELR Sbjct 245 RGPSDEVLYVGTAVDLRRRVRSYFTGSDPRRRIGEMVRLAHRVDHVECSHGLEAAVRELR 304 Query 316 MLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRSRSKAAETAALL 375 +L HAP YNR+SK P+R WWV LT E FPRL V R+P D +GP +R+ AA A ++ Sbjct 305 LLGAHAPAYNRKSKQPHRGWWVVLTAERFPRLKVSRSPSAD-TIGPVGNRTTAATIADVI 363 Query 376 ARCTGLRTCTTRLTRSARHGPACPE---LEVSACPAA--RDVTAAQYAEAVLRAAALIGG 430 + GLRTCT R H PE V C A+ R T Y V AAAL+ G Sbjct 364 SAAAGLRTCTGRAGADGYHWCRLPEPGAATVGLCHASSRRPQTLTDYLPRVTAAAALMSG 423 Query 431 LDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPD 490 D+A L A +V + + +E+AAR RD LA I+AL QRL AL A+ +LI A+PD Sbjct 424 ADDALLTALADRVVAASAAQMFETAARHRDRLALTIDALARCQRLAALCAVAQLIVARPD 483 Query 491 GPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIAL 550 G R G++ AVIRHG+LA AG A RGV PMPVVDA+ A+ ++ PL GA EE AL Sbjct 484 GAR--GWEFAVIRHGRLAGAGVARRGVAPMPVVDALVASAETVIAGDGPLLGAAAEEAAL 541 Query 551 IARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQ 593 + RW+ EP RIV + LA P RSA W +W+ATA A+ Sbjct 542 LFRWITEPDARIVACTE---ALALPARSAQRWQSWSATAHRAR 581 >gi|343924173|ref|ZP_08763736.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC 16433] gi|343765978|dbj|GAA10662.1| DNA polymerase III epsilon subunit [Gordonia alkanivorans NBRC 16433] Length=621 Score = 538 bits (1387), Expect = 9e-151, Method: Compositional matrix adjust. Identities = 321/600 (54%), Positives = 393/600 (66%), Gaps = 29/600 (4%) Query 7 AAMGATGGTQLSFADLAHAQGAAWTPADEMS-------LRETTFVVVDLETTGGRTTGND 59 AA G QL+FADL A A T D MS L +TT VVVDLETTG G Sbjct 9 AAAGQVISGQLTFADLEAADQA--TGGDAMSSEFSDRALFDTTLVVVDLETTGSNPAG-- 64 Query 60 ATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLP 119 D ITEIGAVK+ GG V+GEFATLV+P IPPQIV LTGITTAMV +AP I++VLP Sbjct 65 ----DRITEIGAVKIRGGEVIGEFATLVDPGRPIPPQIVTLTGITTAMVTDAPRIESVLP 120 Query 120 MFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRL 179 F EFA ++LVAHNA FD+GFLR A R + WP LCT+ +ARR+L RDEAP+V+L Sbjct 121 SFLEFARGAILVAHNARFDMGFLRQNALRLHLDWPFSLSLCTVTMARRILPRDEAPTVKL 180 Query 180 AALARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCK 239 +ALA LF V+ PTHRALDDARATV+V H L+ERVGNQG+ T EL SYLP R K Sbjct 181 SALAELFDVSVRPTHRALDDARATVEVFHRLLERVGNQGISTVGELTSYLPRTDPRLRAK 240 Query 240 RVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSID 299 R +A+ +P RPGVYLFRGPS EVLYVGTA DLRRRV YF+G+D R+R+TEMV+LA +D Sbjct 241 RQMADRVPARPGVYLFRGPSNEVLYVGTAVDLRRRVRSYFSGSDPRRRITEMVLLAERVD 300 Query 300 HVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVV 359 VEC+H LEA VRELR+L+ HAP YNRRS P++ WWV LT+E FPRL V R P D + Sbjct 301 VVECSHALEAAVRELRLLAAHAPAYNRRSTQPHKGWWVTLTEERFPRLKVSRTP-TDESI 359 Query 360 GPFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSACPAARDVTAAQ--- 416 GP +R+ AA A ++A GLRTCT RL + H CP + P AAQ Sbjct 360 GPVGNRNNAATVADVIAAAAGLRTCTKRLGATGYHW--CPTPDGVRQPGGCHAAAAQPQT 417 Query 417 ---YAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQ 473 Y V A L+ G + L ++ EL+E + +E+AAR RD LA I+AL Q Sbjct 418 VPDYLPRVTAARRLMRGETDDLLDELTARLAELSEAQMFETAARHRDRLALTIDALARCQ 477 Query 474 RLRALAALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAI 533 RL AL A+ E++ A+PD E G+ AV+RHG+LAAAGRA RGV PMPVVDA+ A+ + Sbjct 478 RLAALCAIAEIVVARPD--EERGWHFAVVRHGRLAAAGRARRGVSPMPVVDALVAAAETV 535 Query 534 LPTPAPLGGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQ 593 +P P PL GA EE+ALI RW+ EPG RIV ++ +A P A W+ +AR A+ Sbjct 536 IPEPGPLRGAPAEEVALIYRWMTEPGARIVSTTDP---VALPAGCAERRRGWSQSARDAR 592 >gi|254821932|ref|ZP_05226933.1| hypothetical protein MintA_18512 [Mycobacterium intracellulare ATCC 13950] Length=323 Score = 526 bits (1354), Expect = 6e-147, Method: Compositional matrix adjust. Identities = 261/324 (81%), Positives = 285/324 (88%), Gaps = 4/324 (1%) Query 26 QGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFAT 85 G+ +TP DE+SLR+TTFVVVDLETTGGRT T PDAITEIGAVKV GG VLGEFAT Sbjct 1 MGSPFTP-DELSLRDTTFVVVDLETTGGRTKSAAGTEPDAITEIGAVKVRGGVVLGEFAT 59 Query 86 LVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFA---GDSVLVAHNAGFDIGFL 142 L++PQ SIPPQ+VRLTGITTAMV +APTIDAVLPMF EFA +VLVAHNAGFDIGFL Sbjct 60 LIDPQRSIPPQVVRLTGITTAMVSDAPTIDAVLPMFLEFARLDQGAVLVAHNAGFDIGFL 119 Query 143 RAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARA 202 RAAA+RCDI WP+PQVLCT+RLARRVLSR+EAPSVRLA+LARLFAV + PTHRALDDARA Sbjct 120 RAAAQRCDIAWPRPQVLCTVRLARRVLSREEAPSVRLASLARLFAVTTQPTHRALDDARA 179 Query 203 TVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEV 262 TVDVLHALIERVGNQGVHTYA+LRSYLP+V AQR KRVLA+ LPHRPGVYLFRGPS EV Sbjct 180 TVDVLHALIERVGNQGVHTYADLRSYLPDVAPAQRRKRVLADGLPHRPGVYLFRGPSDEV 239 Query 263 LYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAP 322 LY+GTA DLRRRV QYF G D R RM EMV LA ++DHVECAH LEAGVRELR+L+ HAP Sbjct 240 LYIGTAVDLRRRVLQYFTGADPRGRMKEMVTLACAVDHVECAHALEAGVRELRLLAAHAP 299 Query 323 PYNRRSKFPYRWWWVALTDEAFPR 346 PYNRRS+FP RWWWVALTDEAFPR Sbjct 300 PYNRRSRFPQRWWWVALTDEAFPR 323 >gi|331696575|ref|YP_004332814.1| DNA polymerase III subunit epsilon [Pseudonocardia dioxanivorans CB1190] gi|326951264|gb|AEA24961.1| DNA polymerase III, epsilon subunit [Pseudonocardia dioxanivorans CB1190] Length=586 Score = 483 bits (1242), Expect = 5e-134, Method: Compositional matrix adjust. Identities = 310/592 (53%), Positives = 370/592 (63%), Gaps = 33/592 (5%) Query 12 TGGT--QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEI 69 +GGT QLSF +L TP LRE TFVV+DLETTGG + + +ITEI Sbjct 10 SGGTVAQLSFDELG-------TP-----LREVTFVVLDLETTGGSSANH------SITEI 51 Query 70 GAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSV 129 GAVKV GG VLGE ATLV+P +PP +V LTGITTAMV AP + VLP EF G +V Sbjct 52 GAVKVRGGEVLGELATLVDPGTGVPPGVVALTGITTAMVTGAPRLAQVLPTLLEFMGGAV 111 Query 130 LVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVA 189 LVAHNA FD GFLRAA R D WP+P LCT RLAR VLSR EAPSVRL ALARLF A Sbjct 112 LVAHNAPFDAGFLRAACERHDRRWPRPPQLCTARLARAVLSRAEAPSVRLGALARLFGTA 171 Query 190 SNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVT-----QAQRCKRVLAE 244 + PTHRAL DARATV+VLH L+ERVGN GV + EL + + + R +R LA Sbjct 172 TQPTHRALADARATVEVLHRLLERVGNLGVQSLEELLALARGASAHRPPEQVRRRRTLAR 231 Query 245 TLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECA 304 +P GVYLFRG EVLYVGT+ DLRRRV YF +RR+RM +MV LA +D + CA Sbjct 232 DVPSAAGVYLFRGARDEVLYVGTSGDLRRRVRSYFTAAERRRRMRDMVSLAERVDTIVCA 291 Query 305 HPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDRVVGPFRS 364 H LEAGVRELR+++ H P YNRRS+ P R WWV TDEAFPRLSV+ PR +GPF S Sbjct 292 HALEAGVRELRLIAAHRPRYNRRSRNPGRAWWVVPTDEAFPRLSVVTTPRAP-ALGPFGS 350 Query 365 RSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSAC--PAARDVTAAQYAEAVL 422 R A E L LR+CT R+ + C E+ C P A + A+YA V Sbjct 351 RRGATEAVETLLDALPLRSCTQRIPARSPAASPCVLHELGRCRAPCAGLQSVAEYAPGVH 410 Query 423 RAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALP 482 L+ G D+A L +V LA R R+E+AA RD LA AL Q+L ALAALP Sbjct 411 ALQGLVAGADDAPLRRLADRVEALAARERFEAAAAGRDRLAALATALARAQQLAALAALP 470 Query 483 ELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGG 542 E++ A+PDG GG++LAV+RHG+LAAA A RG PPMPVV+++R A+ ILP PL G Sbjct 471 EVVGARPDG--HGGWELAVVRHGRLAAADVARRGTPPMPVVESLRATARTILPADGPLAG 528 Query 543 ALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAWAATARSAQL 594 A EE+ L+ RWL G R+V + A P R A W WA AR A L Sbjct 529 ASAEEVNLVRRWLTTGGTRLV---HSEPSWAEPARGAAAWEGWARRARQAPL 577 >gi|269127278|ref|YP_003300648.1| DNA polymerase III subunit epsilon [Thermomonospora curvata DSM 43183] gi|268312236|gb|ACY98610.1| DNA polymerase III, epsilon subunit [Thermomonospora curvata DSM 43183] Length=605 Score = 457 bits (1177), Expect = 2e-126, Method: Compositional matrix adjust. Identities = 282/557 (51%), Positives = 346/557 (63%), Gaps = 21/557 (3%) Query 38 LRETTFVVVDLETTGGRTTGNDATPPD-AITEIGAVKVCGGAVLGEFATLVNPQHSIPPQ 96 L + TFVVVDLETTGG +P D AITE+GAVKV GG LGEFATLV+P IPP Sbjct 39 LVDVTFVVVDLETTGG-------SPADSAITEVGAVKVRGGERLGEFATLVDPGVPIPPF 91 Query 97 IVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQP 156 I LTGIT MV NAP + AVLP F EFA VLVAHNA FDIGFLRAA D WP Sbjct 92 ITALTGITQQMVTNAPPMSAVLPAFLEFARGCVLVAHNAPFDIGFLRAACTAHDHPWPAF 151 Query 157 QVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIERVGN 216 V+ T LARRVL+R+E P+ +LA LAR F + P HRAL DARATVDVLH LIER+G+ Sbjct 152 PVVDTADLARRVLTREEVPNCKLATLARYFRTGTEPCHRALADARATVDVLHGLIERLGS 211 Query 217 QGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVS 276 GVH+ ELR++ T QR KR LA+ +P PGVYLF GEVLYVG + DLR RV Sbjct 212 YGVHSLEELRAFAKTPTPEQRRKRHLADGMPSAPGVYLFEDARGEVLYVGKSNDLRARVR 271 Query 277 QYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWW 336 YF ++ R+R+ EMV LA + + CA LEA VRELR+++ H P YNRRSKFP R W Sbjct 272 SYFTASETRRRIREMVGLAERVRPIVCATALEAEVRELRLIAEHKPRYNRRSKFPERTLW 331 Query 337 VALT-DEAFPRLSVIRAPRHDRVV--GPFRSRSKAAETAALLARCTGLRTCTTRLT-RSA 392 + LT E FPRLS++R R ++ V GPF S +A E A L LR CT RLT R Sbjct 332 LKLTVGETFPRLSIVRDCRDEQAVYLGPFGSLRQAEEARAALHEAVPLRQCTQRLTPRLI 391 Query 393 RHGPA--CPELEVSAC--PAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAE 448 HG A C ++ C P +A Y V A +++ G +AAA ++ LA Sbjct 392 AHGRARTCALGQIGRCGAPCEGRQSADVYLRHVETARSIMEGDVRPVVAAARVRIDRLAV 451 Query 449 RRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLA 508 + RYE AA RD LA + A GQRL ALA P+L+AA+P GG++LAV+RHG+LA Sbjct 452 QLRYEEAAAQRDRLAAFVRAAARGQRLAALARCPQLVAARPAF--GGGWELAVVRHGRLA 509 Query 509 AAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSND 568 AAG P+G P P V+A A+ ++P P P+GGA+ EE+ + RWL PG R+V + Sbjct 510 AAGTVPQGASPWPHVEAAVATAETVIPGPGPVGGAIPEEVECVLRWLEGPGTRLVELEGT 569 Query 569 AAGLASPVRSAGPWAAW 585 +SPV A AW Sbjct 570 ---WSSPVHGAEGLRAW 583 >gi|258653407|ref|YP_003202563.1| hypothetical protein Namu_3243 [Nakamurella multipartita DSM 44233] gi|258556632|gb|ACV79574.1| DNA polymerase III, epsilon subunit [Nakamurella multipartita DSM 44233] Length=613 Score = 455 bits (1171), Expect = 1e-125, Method: Compositional matrix adjust. Identities = 297/603 (50%), Positives = 367/603 (61%), Gaps = 30/603 (4%) Query 3 GPNVAAMGATGGTQLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATP 62 GP + G Q SF +L LRE TFVVVDLETTGG + AT Sbjct 21 GPRDPVVTPAVGGQRSFDELGE------------PLREVTFVVVDLETTGG----SPAT- 63 Query 63 PDAITEIGAVKVCGGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFF 122 +AITEIGAVKV GG VLGEFATLV+P +IPPQI LTGIT AMV +AP I +VLP F Sbjct 64 -EAITEIGAVKVRGGQVLGEFATLVDPGRTIPPQITMLTGITNAMVYDAPRISSVLPAFL 122 Query 123 EFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAAL 182 EFA SVLVAHNA FD+GFLRAA R + WP P V+ T+RLAR+VL R EAPSVRL+AL Sbjct 123 EFARGSVLVAHNARFDVGFLRAACARQQVPWPGPAVVDTVRLARKVLPRAEAPSVRLSAL 182 Query 183 ARLFAVASNPTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVL 242 A L + P HRAL DARATVDVLHAL ER+G+ GVH+ AEL+ +V +R KR L Sbjct 183 AALLGARTRPDHRALTDARATVDVLHALFERLGSLGVHSLAELQDASRDVAPQRRRKRWL 242 Query 243 AETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVE 302 A+ LP PGVYLFRGP EVLYVGT+ +L +RV YF + R R+ +MV LA +DHVE Sbjct 243 ADRLPAAPGVYLFRGPREEVLYVGTSRNLAQRVRSYFTAAENRPRINQMVALAERVDHVE 302 Query 303 CAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIRAPRHDR--VVG 360 CAH LEA +RE R+++ H PPYNRRS+ P WV LTDEAFPRLS++R P +G Sbjct 303 CAHALEAHIREQRLIAVHQPPYNRRSRRPGGVCWVTLTDEAFPRLSIVRQPPRGSPACLG 362 Query 361 PFRSRSKAAETAALLARCTGLRTCTTRLTRSARHGPACPELEVSAC--PAARDVTAAQYA 418 PF +R A L +R CTTR+ R + G C E+ C P YA Sbjct 363 PFPNRVAAQVAVEALQDVVPIRQCTTRIRRHSPDGTPCVLAELGRCGSPCDGRQDELSYA 422 Query 419 EAVLRAAALIGGLDNAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRAL 478 V R L+ G + L ++ L+ R++ AA RD L+ AL QRL AL Sbjct 423 REVARIVELVDGRSDQLLQLLRTRLLGLSADGRFDQAAVARDRLSALAAALDRRQRLGAL 482 Query 479 AALPELIAAKPDGPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPA 538 AA+ EL+ A+PD GG++L V+RHG+ AAA A RGV PMPVV+A+ A+ + P P Sbjct 483 AAIRELVVARPD--ERGGWELTVVRHGRFAAAAHARRGVDPMPVVEAMVASAETVHPGPG 540 Query 539 PLGGALVEEIALIARWLAEPGVRIVGVSNDAAGLASPVRSAGPWAAW---AATARSAQLA 595 PL A EE + + RW+ PG R+V S A +SP AG W + A ARS ++A Sbjct 541 PLPAASAEETSTLLRWIERPGSRLVRAS---APWSSPAAGAGRWRPFMKVADIARSTRIA 597 Query 596 GEQ 598 + Sbjct 598 PQH 600 >gi|111224492|ref|YP_715286.1| hypothetical protein FRAAL5108 [Frankia alni ACN14a] gi|111152024|emb|CAJ63748.1| putative DNA-directed DNA polymerase [Frankia alni ACN14a] Length=580 Score = 441 bits (1133), Expect = 3e-121, Method: Compositional matrix adjust. Identities = 270/540 (50%), Positives = 335/540 (63%), Gaps = 14/540 (2%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQH 91 DE+ L + TFVVVDLETTG ++ ITEIGAV+V GG VL E +TLV P Sbjct 10 DELGRPLSDLTFVVVDLETTGTSAATSE------ITEIGAVRVRGGEVLAEMSTLVRPSA 63 Query 92 SIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI 151 IPP + +TGIT AMV AP V+P F EFA +VLVAHNA FD+GFLRAAA+RC Sbjct 64 GIPPMVSVITGITDAMVATAPAEAEVVPTFLEFARGAVLVAHNAPFDLGFLRAAAQRCGY 123 Query 152 TWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALI 211 P + L T+R+ARR++SRDEAP RLA+LARLF ++ P HRAL DARATVDVLH L Sbjct 124 PPPAWEHLDTLRIARRLVSRDEAPDCRLASLARLFRSSTEPCHRALADARATVDVLHGLF 183 Query 212 ERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADL 271 ER+GN GV T EL Y V+ AQR KR LA+ LP PGVY+FR G LYVGT+ + Sbjct 184 ERLGNAGVRTLEELHEYSARVSPAQRRKRYLADGLPTGPGVYIFRDADGRALYVGTSRSV 243 Query 272 RRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFP 331 R RV YF ++ R RM EMV LA +D + CAH LEA VRELR+++ H PPYNRRS+FP Sbjct 244 RSRVRTYFTASEPRTRMAEMVALAERVDAIGCAHALEAEVRELRLIAEHKPPYNRRSRFP 303 Query 332 YRWWWVALTDEAFPRLSVIRAPRHD-RVVGPFRSRSKAAETAALLARCTGLRTCTTRLTR 390 R ++ LTDE FPRLS +RA R + +GPF S A + A L LR CT RL+ Sbjct 304 ERTVYLKLTDEPFPRLSRVRAARDEATYLGPFASTRGADDAADALLAAVPLRQCTGRLSP 363 Query 391 SARHGPACPELEVSACPAARD--VTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAE 448 AR PAC ++ C A D A YA V A A I G +AA+ +++ LA Sbjct 364 RARR-PACALADLGRCGAPCDGREDVAAYARHVAAARAAITGDPGPVIAASTRRIDRLAG 422 Query 449 RRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLA 508 RRYE AA RD + + + A GQRL AL +P+L+AA P + G+ LAV+RHG+L Sbjct 423 ERRYEEAAVHRDRMVSFVRAAARGQRLAALTRIPQLVAAAPTA--QAGWDLAVVRHGRLV 480 Query 509 AAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSND 568 +A G+ P P VDA A+ + P P P A VEE IARWLA GVR+V + + Sbjct 481 SAANVAPGIDPRPWVDAAVASAETVRPQPGPAPCASVEETERIARWLAGSGVRLVRLDGE 540 >gi|326333554|ref|ZP_08199794.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] gi|325948663|gb|EGD40763.1| putative DNA polymerase III, epsilon subunit [Nocardioidaceae bacterium Broad-1] Length=580 Score = 439 bits (1130), Expect = 5e-121, Method: Compositional matrix adjust. Identities = 258/557 (47%), Positives = 338/557 (61%), Gaps = 17/557 (3%) Query 34 DEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQH 91 DE+ LR+ TF VVDLETTG N ITEIGAVKV GG VLGEF TLVNP Sbjct 33 DELGRPLRDLTFCVVDLETTG-----NSPDNGGMITEIGAVKVRGGEVLGEFQTLVNPHT 87 Query 92 SIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDI 151 IPP I LTGIT +MV ++PTI++VLP F EFA VLVAHNA FD+GFL+ A + + Sbjct 88 GIPPSIAVLTGITNSMVASSPTIESVLPAFLEFAEGCVLVAHNAPFDVGFLKHFAAKQER 147 Query 152 TWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALI 211 WP+ +VL T+++ARRV++RDEAP+ +L +LAR+F + P HRAL DARATVDVLH ++ Sbjct 148 PWPRFEVLDTVKIARRVITRDEAPNHKLGSLARVFGSPTTPNHRALQDARATVDVLHGMM 207 Query 212 ERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADL 271 ER+GN GV T +L ++ VT AQR KR LAE LPH PGVYLF+ VLY+GT+ DL Sbjct 208 ERLGNLGVLTLEDLAAFSAKVTTAQRKKRHLAEDLPHAPGVYLFKDSQDRVLYIGTSKDL 267 Query 272 RRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFP 331 R RV YF ++ R RM EMV LA+++ +ECA LEAGVRELR++ H PPYNRRS+ P Sbjct 268 RTRVRTYFTASETRSRMGEMVGLAATVQGIECATALEAGVRELRLIGEHKPPYNRRSRRP 327 Query 332 YRWWWVALTDEAFPRLSVIRAPRHD--RVVGPFRSRSKAAETAALLARCTGLRTCTTRLT 389 + +V LT E +PRLS+++ D +GPF S+ A L +R C+ RL Sbjct 328 EKMHFVKLTQEPWPRLSLVKRVLDDDADYLGPFGSKKVAENALQALHDTFPIRQCSDRLP 387 Query 390 RSARHGPACPELEVSAC--PAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELA 447 R P C E+ C P + V A YA V R I + + +++T LA Sbjct 388 LLPRKTP-CVLAELHRCLSPCDQSVPAETYATLVSRVRESILHRPDEVVETITERLTGLA 446 Query 448 ERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQL 507 E+ R+E AA RD L + + A QRL AL LP+L A + + +G + + V+RHG+L Sbjct 447 EQERFEEAAVHRDRLTSYLRAAARTQRLSALTRLPDLTAIRRED--DGRWAVHVVRHGRL 504 Query 508 AAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSN 567 AAAG PR V ++ A+ +L P P+ A EE L+ RWL PGVR+ + Sbjct 505 AAAGVIPREANAHAYVADLQLSAETVLDAPGPVPAASAEETELVLRWLESPGVRLAHIEG 564 Query 568 DAAGLASPVRSAGPWAA 584 + P+ AG AA Sbjct 565 E---WTCPIDGAGRRAA 578 >gi|315504521|ref|YP_004083408.1| DNA polymerase III, subunit epsilon [Micromonospora sp. L5] gi|315411140|gb|ADU09257.1| DNA polymerase III, epsilon subunit [Micromonospora sp. L5] Length=584 Score = 436 bits (1122), Expect = 4e-120, Method: Compositional matrix adjust. Identities = 276/570 (49%), Positives = 340/570 (60%), Gaps = 20/570 (3%) Query 16 QLSFADLAHAQGAAWTPADEMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVC 75 Q S A L A G+ PA + L TTFVVVDLETTGG G ITEIGAVKV Sbjct 8 QESLAGLDPA-GSGVDPA--LPLYATTFVVVDLETTGGAPDGG------GITEIGAVKVR 58 Query 76 GGAVLGEFATLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNA 135 GG LG ATLVNP IPP I LTGIT AM+ AP I+ VLP F EF D+VLVAHNA Sbjct 59 GGEELGVLATLVNPGVPIPPFITVLTGITQAMLLPAPPIEQVLPSFLEFISDAVLVAHNA 118 Query 136 GFDIGFLRAAARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHR 195 +D+GFL+AA + WP P+VL T LARRVL+RDE P+ +L LA F A+ PTHR Sbjct 119 PYDVGFLKAACAKHGYRWPNPRVLDTAALARRVLTRDEVPNRKLGTLAAYFRTATQPTHR 178 Query 196 ALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLF 255 ALDDA+ATVDVLH LI R+G V T E + VT QR KR LA+ LP PGVY+F Sbjct 179 ALDDAKATVDVLHGLIGRLGGHRVGTVGEAIEFARAVTPTQRRKRHLADGLPKVPGVYIF 238 Query 256 RGPSGEVLYVGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELR 315 R LYVGT+ D+ RV YF ++R R++EM+ A ++ VECAH LEA VRELR Sbjct 239 RAADDRPLYVGTSGDIATRVRSYFTAAEKRARISEMLAAAERVEAVECAHSLEAEVRELR 298 Query 316 MLSTHAPPYNRRSKFPYRWWWVALTDEAFPRLSVIR--APRHDRVVGPFRSRSKAAETAA 373 +++ HAPPYNRRSK+P R W+ LTDEA+PRLS++R AP +GPFRSR A AA Sbjct 299 LIAAHAPPYNRRSKYPERQVWLKLTDEAYPRLSIVRALAPTDTAYLGPFRSRQAAELAAA 358 Query 374 LLARCTGLRTCTTRLTRSARHGPACPELEVSACPA--ARDVTAAQYAEAVLRAAALIGGL 431 LR CT RL+R PAC E+ CPA +T +Y +A Sbjct 359 GFHDAVPLRQCTHRLSRRTTM-PACALAELGRCPAPCEHKITPEEYDDAAATPFRTATSD 417 Query 432 D-NAALAAAVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPD 490 D + A + ++ L+ RRYE AA +R L + A QRL AL + EL AA+P Sbjct 418 DPGVVVDALLARIEVLSAARRYEEAAVVRGRLVAVLRAAVRMQRLAALTGIAELAAARPA 477 Query 491 GPREGGYQLAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIAL 550 GG++LA++RHG+LA AG +P GV P P + AIR A+ +LP P+ A EE Sbjct 478 --ARGGWELALVRHGRLAGAGVSPPGVHPRPTIAAIRATAETVLPGHGPVPAATAEETER 535 Query 551 IARWLAEPGVRIVGVSNDAAGLASPVRSAG 580 I WL P R+V ++ G ASPV AG Sbjct 536 ILSWLERPETRLVETTD---GWASPVAGAG 562 >gi|159039058|ref|YP_001538311.1| hypothetical protein Sare_3518 [Salinispora arenicola CNS-205] gi|157917893|gb|ABV99320.1| DNA polymerase III, epsilon subunit [Salinispora arenicola CNS-205] Length=585 Score = 436 bits (1120), Expect = 9e-120, Method: Compositional matrix adjust. Identities = 274/574 (48%), Positives = 340/574 (60%), Gaps = 23/574 (4%) Query 35 EMSLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFATLVNPQHSIP 94 E+ L TTFVVVDLETTGG G ITEIGAVKV GG LG ATLVNP +P Sbjct 24 ELPLYATTFVVVDLETTGGAPDGG------GITEIGAVKVRGGEQLGVLATLVNPGVPVP 77 Query 95 PQIVRLTGITTAMVGNAPTIDAVLPMFFEF-AGDSVLVAHNAGFDIGFLRAAARRCDITW 153 P + LTGIT AM+ AP+I VLP F EF + D+VLVAHNA +D+GFL+AA W Sbjct 78 PFVTVLTGITQAMLLPAPSIAQVLPSFLEFLSADAVLVAHNAPYDVGFLKAACAAHGHRW 137 Query 154 PQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIER 213 P P++L T LARRVLSRDE P+ RL LA F ++ PTHRALDDA+ATVDVLH LI R Sbjct 138 PNPRILDTAALARRVLSRDEVPNRRLGTLAAYFRTSTQPTHRALDDAKATVDVLHGLIAR 197 Query 214 VGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRR 273 +G VHT E + VT QR KR LAE LP PGVYLFRG LYVGT+ D+ Sbjct 198 LGGHRVHTIGEAIEFARAVTPTQRRKRHLAEGLPRTPGVYLFRGADDRPLYVGTSVDIAT 257 Query 274 RVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYR 333 RV YF ++R R++EM+ A ++ VECAH LEA VRELR++ HAPPYNRRSKFP R Sbjct 258 RVRSYFTAAEKRARISEMLAAAVRVEAVECAHSLEAEVRELRLIGAHAPPYNRRSKFPER 317 Query 334 WWWVALTDEAFPRLSVIR--APRHDRVVGPFRSRSKAAETAALLARCTGLRTCTTRLT-R 390 W+ LTDEA+PRLSV+R P + +GPF SR A AA LR CT RL+ R Sbjct 318 VVWLKLTDEAYPRLSVVRKLTPGDEAYLGPFTSRRAAELAAAGFHDAMPLRQCTHRLSVR 377 Query 391 SARHGPACPELEVSACPAARD--VTAAQYAE-AVLRAAALIGGLDNAALAAAVQQVTELA 447 + PAC E+ CPA + +T +YA AV G + A + ++ L+ Sbjct 378 TVT--PACALAELGRCPAPCEHRITPDEYANRAVTPFRTACRGDPQGVVDALLGRIETLS 435 Query 448 ERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQL 507 +RYE AA +R L + A QRL AL + E+ AA+P GG++LA++R+G+L Sbjct 436 TGQRYEEAAVVRSRLTAVLRATTRMQRLAALTGIGEVAAARPA--VGGGWELALVRYGRL 493 Query 508 AAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALVEEIALIARWLAEPGVRIVGVSN 567 A AG +P GV P P + IR A+ + P P A EE I WL P R+V +S+ Sbjct 494 AGAGVSPPGVHPRPTIATIRATAETVTPGLGPTPAASAEETERILSWLERPETRLVEMSS 553 Query 568 DAAGLASPVRSAGPWAAW---AATARSAQLAGEQ 598 G ASP AG + A A S QL+ E Sbjct 554 ---GWASPATGAGRFQTLLMKATNAASHQLSSES 584 >gi|317125104|ref|YP_004099216.1| DNA polymerase III subunit epsilon [Intrasporangium calvum DSM 43043] gi|315589192|gb|ADU48489.1| DNA polymerase III, epsilon subunit [Intrasporangium calvum DSM 43043] Length=590 Score = 435 bits (1119), Expect = 1e-119, Method: Compositional matrix adjust. Identities = 258/532 (49%), Positives = 321/532 (61%), Gaps = 19/532 (3%) Query 38 LRETTFVVVDLETTGGRTTGNDATPPD-AITEIGAVKVCGGAVLGEFATLVNPQHSIPPQ 96 L + TFVVVDLE+TGG +P ITEIGAVKV GG V+GEF TLVNP IP Sbjct 15 LADVTFVVVDLESTGG-------SPAQCGITEIGAVKVRGGDVIGEFQTLVNPAEPIPAF 67 Query 97 IVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRAAARRCDITWPQP 156 I LTGIT AMV ++P I++ P F EFA SVLVAHNAGFDI FL+AAA R WP Sbjct 68 ISVLTGITDAMVADSPRIESAFPAFLEFAAGSVLVAHNAGFDISFLKAAAVRTGTPWPGF 127 Query 157 QVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATVDVLHALIERVGN 216 VL T+ LAR++++RDE P+ +L++LAR+FA + P HRAL DARATVDVLH LIERVGN Sbjct 128 DVLDTLTLARQLVTRDEVPNHKLSSLARVFASPTTPDHRALHDARATVDVLHGLIERVGN 187 Query 217 QGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLYVGTAADLRRRVS 276 GVHT EL SY V+ AQR KR LA+ LPH PGVYLF+ G VLYVGT+ D+R RV Sbjct 188 LGVHTLEELASYTSRVSPAQRRKRFLADALPHAPGVYLFKDGDGRVLYVGTSRDIRSRVR 247 Query 277 QYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPYNRRSKFPYRWWW 336 YF ++R RM +MV LA ++ V C PLEA VRELR++ H P +NRRSK R W Sbjct 248 SYFTAAEQRSRMADMVRLAHAVTPVVCQTPLEAQVRELRLIDEHQPRFNRRSKNARRQLW 307 Query 337 VALTDEAFPRLSVIRAPRHD--RVVGPFRSRSKAAETAALLARCTGLRTCTTRLTRSARH 394 V LT E FPRLS++R R + +GPFRSR A + LR CT R+T + Sbjct 308 VKLTSERFPRLSIVRQVRDEGGHHIGPFRSRVTAQAAVDAVHEIVPLRQCTQRITGTE-- 365 Query 395 GPACPELEVSAC--PAARDVTAAQYAEAVLRAAALIGGLDNAALAAAVQQVTELAERRRY 452 AC E+ C P + YA V AAL G ++ ELA + R+ Sbjct 366 -SACALAELGRCGSPCTGAQSRDDYARVVADCAALFSGDARGGGDKLRSRLAELAAQERF 424 Query 453 ESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQLAVIRHGQLAAAGR 512 E AAR+RD + QRL L EL+AA+ G+++ IR G+LA Sbjct 425 EDAARVRDRFLHLVRGAARSQRLTPLMQARELVAARRG--ESDGWEIVCIRQGRLAGTVV 482 Query 513 APRGVPPMPVVDAIRRGAQAILPTPAP-LGGALVEEIALIARWLAEPGVRIV 563 +PRG PM V ++ A+ ++PTP P AL+EE ++ RWL PGVRIV Sbjct 483 SPRGGDPMVHVRVLQATAE-VVPTPEPGATAALIEETEILLRWLESPGVRIV 533 >gi|117928176|ref|YP_872727.1| hypothetical protein Acel_0968 [Acidothermus cellulolyticus 11B] gi|117648639|gb|ABK52741.1| DNA polymerase III, epsilon subunit [Acidothermus cellulolyticus 11B] Length=566 Score = 434 bits (1115), Expect = 4e-119, Method: Compositional matrix adjust. Identities = 271/566 (48%), Positives = 337/566 (60%), Gaps = 32/566 (5%) Query 27 GAAWTPADEMS--LRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKVCGGAVLGEFA 84 G T D++ LR+ TFVVVDLETTGG A AITE+ AVKV GG VLGE Sbjct 8 GFRQTTIDDLDTPLRDVTFVVVDLETTGG------APGTGAITELAAVKVRGGEVLGELQ 61 Query 85 TLVNPQHSIPPQIVRLTGITTAMVGNAPTIDAVLPMFFEFAGDSVLVAHNAGFDIGFLRA 144 TLVNP IPP I LTGIT AMV AP IDAVLP F EFA SVLVAHNA FD+GFLRA Sbjct 62 TLVNPGRPIPPFITVLTGITDAMVAPAPPIDAVLPTFLEFATGSVLVAHNAPFDVGFLRA 121 Query 145 AARRCDITWPQPQVLCTMRLARRVLSRDEAPSVRLAALARLFAVASNPTHRALDDARATV 204 A WP+ +VL T RLARRVL+R+EAP+ LA LAR+F + P HRAL D AT+ Sbjct 122 ACAAAGYDWPEFEVLDTARLARRVLTREEAPNCTLATLARVFRAKTTPNHRALADVYATI 181 Query 205 DVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPGVYLFRGPSGEVLY 264 DVLH L+ER+G+ GV + A++R++ VT QR KR LAE LPH PGVYLFR G VLY Sbjct 182 DVLHGLLERLGSFGVGSLADVRTFSAKVTATQRQKRHLAERLPHAPGVYLFRDRQGRVLY 241 Query 265 VGTAADLRRRVSQYFNGTDRRKRMTEMVMLASSIDHVECAHPLEAGVRELRMLSTHAPPY 324 VG A DLR+RV YF + R R+ +M+ +A + + CA LEA +RE+R+++ H P Y Sbjct 242 VGKAKDLRQRVRSYFTAAETRGRIVDMLRVAEDVTPIVCATELEAEIREVRLIAEHKPAY 301 Query 325 NRRSKFPYRWWWVALTDEAFPRLSVIRAPRHD--RVVGPFRSRSKAAETAALLARCTGLR 382 NRRSKFP R WWV LTDE FPRL+V+ R+D +GPF R A L +R Sbjct 302 NRRSKFPERTWWVKLTDERFPRLAVVHTVRNDAATYLGPFNVRESALLAVEALQDAFPIR 361 Query 383 TCTTRLTRSARHGPACPELEVSACPAARDVTAAQYAEAVLRAAALI----GGLDNAALAA 438 C RL R P C E+ C A T AQ +A A + + +AA Sbjct 362 RCPDRLGPRTRR-PPCAWFELGRCGAP--CTGAQSPDAYRSVVAAVHRAMTSDPSEVVAA 418 Query 439 AVQQVTELAERRRYESAARLRDHLATAIEALWHGQRLRALAALPELIAAKPDGPREGGYQ 498 A++++T LA +RYE A +RD L + A+ QRL ALA +++AA+P GP +G + Sbjct 419 ALRRITPLAAAQRYEEAVPIRDRLVAYLHAVGRAQRLAALAGCRQIVAARP-GP-DGAWD 476 Query 499 LAVIRHGQLAAAGRAPRGVPPMPVVDAIRRGAQAILPTPAPLGGALV-----EEIALIAR 553 +AVIRHG+LA AG P G P VD A T P G + EE+ L+ R Sbjct 477 VAVIRHGRLAGAGLIPAGEPE---VDRQLTAIVATASTSLPRGVGITAYADAEEMELLLR 533 Query 554 WLAEPGVRIVGVSNDAA-----GLAS 574 WL +PGVR++ V A GLAS Sbjct 534 WLDQPGVRLLDVEGTWAIPINGGLAS 559 Lambda K H 0.321 0.134 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 1495178131040 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40