BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2193
Length=203
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609330|ref|NP_216709.1| cytochrome C oxidase subunit III [M... 406 9e-112
gi|240168252|ref|ZP_04746911.1| cytochrome C oxidase (subunit II... 386 1e-105
gi|118618835|ref|YP_907167.1| cytochrome C oxidase (subunit III)... 386 1e-105
gi|342859903|ref|ZP_08716556.1| cytochrome C oxidase subunit III... 382 1e-104
gi|41408030|ref|NP_960866.1| CtaE [Mycobacterium avium subsp. pa... 380 4e-104
gi|339295107|gb|AEJ47218.1| cytochrome C oxidase subunit III [My... 379 1e-103
gi|15827405|ref|NP_301668.1| cytochrome C oxidase subunit III [M... 368 3e-100
gi|119869385|ref|YP_939337.1| cytochrome c oxidase subunit III [... 365 2e-99
gi|118467557|ref|YP_888537.1| cytochrome C oxidase subunit 3 [My... 363 6e-99
gi|167969414|ref|ZP_02551691.1| cytochrome C oxidase subunit III... 362 1e-98
gi|333990350|ref|YP_004522964.1| cytochrome C oxidase (subunit I... 360 8e-98
gi|145223543|ref|YP_001134221.1| cytochrome c oxidase subunit II... 360 9e-98
gi|315443889|ref|YP_004076768.1| heme/copper-type cytochrome/qui... 358 3e-97
gi|120404528|ref|YP_954357.1| cytochrome c oxidase subunit III [... 354 4e-96
gi|229490418|ref|ZP_04384259.1| cytochrome c oxidase subunit 3 [... 350 9e-95
gi|226360272|ref|YP_002778050.1| cytochrome c oxidase subunit II... 349 1e-94
gi|111018143|ref|YP_701115.1| cytochrome c oxidase [Rhodococcus ... 348 3e-94
gi|226307082|ref|YP_002767042.1| cytochrome c oxidase subunit II... 345 2e-93
gi|145225979|ref|YP_001136633.1| cytochrome c oxidase, subunit I... 341 3e-92
gi|169629056|ref|YP_001702705.1| cytochrome c oxidase subunit II... 340 8e-92
gi|119855051|ref|YP_935656.1| cytochrome c oxidase, subunit III ... 339 1e-91
gi|118465650|ref|YP_881503.1| cytochrome C oxidase, subunit 3 [M... 339 1e-91
gi|54023694|ref|YP_117936.1| putative cytochrome c oxidase subun... 338 2e-91
gi|296166061|ref|ZP_06848508.1| cytochrome c oxidase, subunit II... 338 2e-91
gi|145223396|ref|YP_001134074.1| cytochrome c oxidase subunit II... 336 1e-90
gi|254822835|ref|ZP_05227836.1| cytochrome c oxidase, subunit 3 ... 335 2e-90
gi|262202947|ref|YP_003274155.1| cytochrome-c oxidase [Gordonia ... 328 2e-88
gi|326382517|ref|ZP_08204208.1| cytochrome-c oxidase [Gordonia n... 325 3e-87
gi|108800257|ref|YP_640454.1| cytochrome c oxidase subunit III [... 322 3e-86
gi|333918952|ref|YP_004492533.1| cytochrome c oxidase subunit 3 ... 321 3e-86
gi|312140186|ref|YP_004007522.1| cytochrome c oxidase subunit ii... 319 1e-85
gi|343924169|ref|ZP_08763732.1| cytochrome c oxidase subunit III... 311 4e-83
gi|331696571|ref|YP_004332810.1| cytochrome-c oxidase [Pseudonoc... 310 7e-83
gi|324998039|ref|ZP_08119151.1| cytochrome c oxidase, subunit II... 308 3e-82
gi|325676932|ref|ZP_08156604.1| cytochrome c oxidase, subunit II... 302 2e-80
gi|296393481|ref|YP_003658365.1| cytochrome-c oxidase [Segnilipa... 298 3e-79
gi|317506584|ref|ZP_07964376.1| cytochrome c oxidase subunit 3 p... 297 6e-79
gi|319950678|ref|ZP_08024579.1| cytochrome c oxidase [Dietzia ci... 295 2e-78
gi|257055118|ref|YP_003132950.1| heme/copper-type cytochrome/qui... 291 3e-77
gi|291004312|ref|ZP_06562285.1| cytochrome c oxidase subunit III... 290 6e-77
gi|284991759|ref|YP_003410313.1| cytochrome-c oxidase [Geodermat... 290 9e-77
gi|302525353|ref|ZP_07277695.1| cytochrome aa3 quinol oxidase, s... 286 8e-76
gi|340525526|gb|AEK40731.1| cytochrome C oxidase subunit III [Am... 285 3e-75
gi|256375511|ref|YP_003099171.1| cytochrome C oxidase subunit II... 279 2e-73
gi|340794098|ref|YP_004759561.1| cytochrome C oxidase subunit II... 279 2e-73
gi|291301586|ref|YP_003512864.1| cytochrome-c oxidase [Stackebra... 278 3e-73
gi|258653412|ref|YP_003202568.1| cytochrome-c oxidase [Nakamurel... 276 2e-72
gi|334563273|ref|ZP_08516264.1| cytochrome c oxidase subunit III... 274 5e-72
gi|134098267|ref|YP_001103928.1| cytochrome c oxidase subunit II... 273 9e-72
gi|336325315|ref|YP_004605281.1| cytochrome C oxidase subunit II... 270 7e-71
>gi|15609330|ref|NP_216709.1| cytochrome C oxidase subunit III [Mycobacterium tuberculosis
H37Rv]
gi|15841684|ref|NP_336721.1| cytochrome c oxidase, subunit III [Mycobacterium tuberculosis
CDC1551]
gi|31793372|ref|NP_855865.1| cytochrome C oxidase subunit III [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=203
Score = 406 bits (1044), Expect = 9e-112, Method: Compositional matrix adjust.
Identities = 202/203 (99%), Positives = 203/203 (100%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE
Sbjct 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV
Sbjct 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALFTVIYFIR
Sbjct 181 VSYYWHFVDIVWIALFTVIYFIR 203
>gi|240168252|ref|ZP_04746911.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium kansasii
ATCC 12478]
Length=203
Score = 386 bits (992), Expect = 1e-105, Method: Compositional matrix adjust.
Identities = 189/203 (94%), Positives = 198/203 (98%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPP
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGKWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYVITFLMGLFF+LGQAYE
Sbjct 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFILGQAYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L +HGT+IP SAYGSVFYLATGFHGLHVTGGLIAFIFLL+RTGMSKFTPAQATASIV
Sbjct 121 YYHLATHGTTIPGSAYGSVFYLATGFHGLHVTGGLIAFIFLLIRTGMSKFTPAQATASIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALFTVIYFIR
Sbjct 181 VSYYWHFVDIVWIALFTVIYFIR 203
>gi|118618835|ref|YP_907167.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium ulcerans
Agy99]
gi|183983228|ref|YP_001851519.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium marinum
M]
gi|118570945|gb|ABL05696.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium ulcerans
Agy99]
gi|183176554|gb|ACC41664.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium marinum
M]
Length=203
Score = 386 bits (991), Expect = 1e-105, Method: Compositional matrix adjust.
Identities = 190/203 (94%), Positives = 198/203 (98%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+AR+QAGG WPP
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARSQAGGKWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYVITFLMGLFFVLGQ YE
Sbjct 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L++HGT+IP SAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV
Sbjct 121 YYHLVTHGTTIPGSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALFTVIYFIR
Sbjct 181 VSYYWHFVDIVWIALFTVIYFIR 203
>gi|342859903|ref|ZP_08716556.1| cytochrome C oxidase subunit III [Mycobacterium colombiense CECT
3035]
gi|342133035|gb|EGT86255.1| cytochrome C oxidase subunit III [Mycobacterium colombiense CECT
3035]
Length=398
Score = 382 bits (982), Expect = 1e-104, Method: Compositional matrix adjust.
Identities = 186/203 (92%), Positives = 193/203 (96%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSA GTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPP
Sbjct 196 VTSAAGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGKWPP 255
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYV+TFLMGLFFV GQ YE
Sbjct 256 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVLTFLMGLFFVCGQGYE 315
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +LM+HGT+IP SAYGSVFYLATGFHGLHVTGGLIAFIFLL RT MSKFTPAQATASIV
Sbjct 316 YYHLMTHGTTIPGSAYGSVFYLATGFHGLHVTGGLIAFIFLLARTAMSKFTPAQATASIV 375
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF VIYFIR
Sbjct 376 VSYYWHFVDIVWIALFAVIYFIR 398
>gi|41408030|ref|NP_960866.1| CtaE [Mycobacterium avium subsp. paratuberculosis K-10]
gi|62899981|sp|Q73YM3.1|COX3_MYCPA RecName: Full=Probable cytochrome c oxidase subunit 3; AltName:
Full=Cytochrome aa3 subunit 3; AltName: Full=Cytochrome c
oxidase polypeptide III
gi|41396385|gb|AAS04249.1| CtaE [Mycobacterium avium subsp. paratuberculosis K-10]
Length=203
Score = 380 bits (977), Expect = 4e-104, Method: Compositional matrix adjust.
Identities = 187/203 (93%), Positives = 194/203 (96%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPP
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGKWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYVITFLMGLFFVLGQ YE
Sbjct 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +LM HGT+IP SAYGSVFYLATGFH LHVTGGL+AFIFLL RT MSKFTPAQATASIV
Sbjct 121 YYHLMGHGTTIPGSAYGSVFYLATGFHDLHVTGGLVAFIFLLARTAMSKFTPAQATASIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALFTVIYFIR
Sbjct 181 VSYYWHFVDIVWIALFTVIYFIR 203
>gi|339295107|gb|AEJ47218.1| cytochrome C oxidase subunit III [Mycobacterium tuberculosis
CCDC5079]
gi|339298728|gb|AEJ50838.1| cytochrome C oxidase subunit III [Mycobacterium tuberculosis
CCDC5180]
Length=188
Score = 379 bits (974), Expect = 1e-103, Method: Compositional matrix adjust.
Identities = 187/188 (99%), Positives = 188/188 (100%), Gaps = 0/188 (0%)
Query 16 VHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTL 75
+HSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTL
Sbjct 1 MHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTL 60
Query 76 VLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSA 135
VLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSA
Sbjct 61 VLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSA 120
Query 136 YGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIAL 195
YGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIAL
Sbjct 121 YGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIAL 180
Query 196 FTVIYFIR 203
FTVIYFIR
Sbjct 181 FTVIYFIR 188
>gi|15827405|ref|NP_301668.1| cytochrome C oxidase subunit III [Mycobacterium leprae TN]
gi|221229882|ref|YP_002503298.1| cytochrome C oxidase subunit III [Mycobacterium leprae Br4923]
gi|62899906|sp|O69582.1|COX3_MYCLE RecName: Full=Probable cytochrome c oxidase subunit 3; AltName:
Full=Cytochrome aa3 subunit 3; AltName: Full=Cytochrome c
oxidase polypeptide III
gi|3080503|emb|CAA18701.1| cytochrome c oxidase subunit III [Mycobacterium leprae]
gi|13092955|emb|CAC31263.1| cytochrome C oxidase subunit III [Mycobacterium leprae]
gi|219932989|emb|CAR70977.1| cytochrome C oxidase subunit III [Mycobacterium leprae Br4923]
Length=202
Score = 368 bits (944), Expect = 3e-100, Method: Compositional matrix adjust.
Identities = 183/203 (91%), Positives = 192/203 (95%), Gaps = 1/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TS VGT GTAITSRVHSLNRPNMVSVGT+VWLSSELMFFAGLFA YF+ARAQAGG WPP
Sbjct 1 MTSTVGTLGTAITSRVHSLNRPNMVSVGTVVWLSSELMFFAGLFAMYFTARAQAGGKWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
TELNLYQAVPVTLVLIASSFTCQMGVF+AERGD+FGLRRWYVIT LMGLFFVLGQ YE
Sbjct 61 S-TELNLYQAVPVTLVLIASSFTCQMGVFSAERGDVFGLRRWYVITLLMGLFFVLGQGYE 119
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L++HGT+IPSSAYGSVFYLATGFHGLHVTGGLIAFIFLL RT MSKFTPAQATASIV
Sbjct 120 YYHLITHGTTIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLARTTMSKFTPAQATASIV 179
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALFTVIYFIR
Sbjct 180 VSYYWHFVDIVWIALFTVIYFIR 202
>gi|119869385|ref|YP_939337.1| cytochrome c oxidase subunit III [Mycobacterium sp. KMS]
gi|126435880|ref|YP_001071571.1| cytochrome c oxidase subunit III [Mycobacterium sp. JLS]
gi|119695474|gb|ABL92547.1| cytochrome c oxidase, subunit III [Mycobacterium sp. KMS]
gi|126235680|gb|ABN99080.1| cytochrome c oxidase, subunit III [Mycobacterium sp. JLS]
Length=203
Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 179/203 (89%), Positives = 190/203 (94%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQAGG WPP
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGEWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPTELNL AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYV+TFLMGLFFVLGQ YE
Sbjct 61 PPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVLTFLMGLFFVLGQLYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ GT+IP SAYGSVFYLATGFHGLHV GGL+AF+FLL RT MSKFTPAQATA+IV
Sbjct 121 YYHLVHEGTTIPGSAYGSVFYLATGFHGLHVIGGLVAFLFLLARTKMSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF VIYF+R
Sbjct 181 VSYYWHFVDIVWIALFAVIYFVR 203
>gi|118467557|ref|YP_888537.1| cytochrome C oxidase subunit 3 [Mycobacterium smegmatis str.
MC2 155]
gi|118168844|gb|ABK69740.1| cytochrome c oxidase subunit 3 [Mycobacterium smegmatis str.
MC2 155]
Length=203
Score = 363 bits (933), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 178/203 (88%), Positives = 188/203 (93%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQAGG WPP
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGAWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYVITFLMGLFFVLGQ YE
Sbjct 61 EPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGT+IP SAYGSVFYLATGFHGLHV GGL+AF+ LL RT MSKFTPAQATA+IV
Sbjct 121 YIHLVEHGTTIPGSAYGSVFYLATGFHGLHVIGGLVAFVLLLARTKMSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF IYF+R
Sbjct 181 VSYYWHFVDIVWIALFATIYFVR 203
>gi|167969414|ref|ZP_02551691.1| cytochrome C oxidase subunit III ctaE [Mycobacterium tuberculosis
H37Ra]
gi|254551233|ref|ZP_05141680.1| cytochrome C oxidase subunit III ctaE [Mycobacterium tuberculosis
'98-R604 INH-RIF-EM']
Length=180
Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 180/180 (100%), Positives = 180/180 (100%), Gaps = 0/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT
Sbjct 1 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 143
CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA
Sbjct 61 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 120
Query 144 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 203
TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR
Sbjct 121 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 180
>gi|333990350|ref|YP_004522964.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium sp. JDM601]
gi|333486318|gb|AEF35710.1| cytochrome C oxidase (subunit III) CtaE [Mycobacterium sp. JDM601]
Length=199
Score = 360 bits (923), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 173/199 (87%), Positives = 189/199 (95%), Gaps = 0/199 (0%)
Query 5 VGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTE 64
+G+SGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPPPPTE
Sbjct 1 MGSSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGAWPPPPTE 60
Query 65 LNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNL 124
LNL+Q+VPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY++TFLMGLFFV GQ YEY +L
Sbjct 61 LNLWQSVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYLVTFLMGLFFVCGQGYEYYHL 120
Query 125 MSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYY 184
+SHGT+IPSSAYG+VFYL TGFHGLHV GGLIAF+FL++RT MSKFTPAQATASIVVSYY
Sbjct 121 ISHGTTIPSSAYGTVFYLTTGFHGLHVIGGLIAFVFLMLRTTMSKFTPAQATASIVVSYY 180
Query 185 WHFVDIVWIALFTVIYFIR 203
WHFVDIVWIALF IYFIR
Sbjct 181 WHFVDIVWIALFATIYFIR 199
>gi|145223543|ref|YP_001134221.1| cytochrome c oxidase subunit III [Mycobacterium gilvum PYR-GCK]
gi|145216029|gb|ABP45433.1| cytochrome c oxidase, subunit III [Mycobacterium gilvum PYR-GCK]
Length=220
Score = 360 bits (923), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 175/203 (87%), Positives = 188/203 (93%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSAVG+SGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQAGG+WPP
Sbjct 18 VTSAVGSSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGDWPP 77
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY +T MG FFVLGQAYE
Sbjct 78 EPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYTLTLAMGTFFVLGQAYE 137
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGT+IP SAYG+VFYLATGFHGLHV GGLIAF+ LL+RT MSKFTPAQATA+IV
Sbjct 138 YLHLVQHGTTIPGSAYGTVFYLATGFHGLHVIGGLIAFVLLLLRTRMSKFTPAQATAAIV 197
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF VIYF+R
Sbjct 198 VSYYWHFVDIVWIALFAVIYFVR 220
>gi|315443889|ref|YP_004076768.1| heme/copper-type cytochrome/quinol oxidase subunit 3 [Mycobacterium
sp. Spyr1]
gi|315262192|gb|ADT98933.1| heme/copper-type cytochrome/quinol oxidase, subunit 3 [Mycobacterium
sp. Spyr1]
Length=203
Score = 358 bits (918), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 174/203 (86%), Positives = 188/203 (93%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVG+SGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQAGG+WPP
Sbjct 1 MTSAVGSSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGDWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY +T MG FFVLGQAYE
Sbjct 61 EPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYTLTLAMGTFFVLGQAYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGT+IP SAYG+VFYLATGFHGLHV GGLIAF+ LL+RT MSKFTPAQATA+IV
Sbjct 121 YLHLVQHGTTIPGSAYGTVFYLATGFHGLHVIGGLIAFVLLLLRTRMSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF VIYF+R
Sbjct 181 VSYYWHFVDIVWIALFAVIYFVR 203
>gi|120404528|ref|YP_954357.1| cytochrome c oxidase subunit III [Mycobacterium vanbaalenii PYR-1]
gi|119957346|gb|ABM14351.1| cytochrome c oxidase, subunit III [Mycobacterium vanbaalenii
PYR-1]
Length=220
Score = 354 bits (909), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 173/203 (86%), Positives = 185/203 (92%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF+ARAQA G+WPP
Sbjct 18 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFTARAQAHGDWPP 77
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY +T MG FFVLGQ YE
Sbjct 78 EPTELNLALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYTLTLAMGTFFVLGQGYE 137
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ GT+IP SAYG+VFYLATGFHGLHV GGLIAF+ LL+RT MSKFTPAQATA+IV
Sbjct 138 YIHLVEEGTTIPGSAYGTVFYLATGFHGLHVIGGLIAFVLLLIRTKMSKFTPAQATAAIV 197
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF VIYF+R
Sbjct 198 VSYYWHFVDIVWIALFAVIYFVR 220
>gi|229490418|ref|ZP_04384259.1| cytochrome c oxidase subunit 3 [Rhodococcus erythropolis SK121]
gi|229322708|gb|EEN88488.1| cytochrome c oxidase subunit 3 [Rhodococcus erythropolis SK121]
Length=298
Score = 350 bits (897), Expect = 9e-95, Method: Compositional matrix adjust.
Identities = 170/203 (84%), Positives = 181/203 (90%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSAVGTSG+AIT RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARAQA GNWPP
Sbjct 96 VTSAVGTSGSAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARAQANGNWPP 155
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNLY AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY IT +MG FFV GQ YE
Sbjct 156 EPTELNLYLAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYTITLVMGAFFVAGQGYE 215
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ GT+I SS YGSVFY+ TGFHGLHV GGLIAF+FL+ RT +SKFTPAQATA+IV
Sbjct 216 YYHLVHEGTTISSSVYGSVFYMTTGFHGLHVIGGLIAFVFLIARTRVSKFTPAQATAAIV 275
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF IYFIR
Sbjct 276 VSYYWHFVDIVWIALFATIYFIR 298
>gi|226360272|ref|YP_002778050.1| cytochrome c oxidase subunit III [Rhodococcus opacus B4]
gi|226238757|dbj|BAH49105.1| cytochrome c oxidase subunit III [Rhodococcus opacus B4]
Length=203
Score = 349 bits (895), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 169/203 (84%), Positives = 183/203 (91%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSG+AIT RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARAQA GNWPP
Sbjct 1 MTSAVGTSGSAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARAQANGNWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL+ AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY++T MG FFVLGQAYE
Sbjct 61 EPTELNLFLAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYLLTLAMGTFFVLGQAYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGTSI SS YGSVFY+ TGFHG+HV GGLIAF+FL+ RT +SKFTPAQATA+IV
Sbjct 121 YIHLVEHGTSISSSVYGSVFYMTTGFHGMHVIGGLIAFVFLIARTKVSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWI LF IYFIR
Sbjct 181 VSYYWHFVDIVWIGLFATIYFIR 203
>gi|111018143|ref|YP_701115.1| cytochrome c oxidase [Rhodococcus jostii RHA1]
gi|110817673|gb|ABG92957.1| cytochrome c oxidase [Rhodococcus jostii RHA1]
Length=246
Score = 348 bits (893), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 170/203 (84%), Positives = 183/203 (91%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSAVGTSG+AIT RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARAQA GNWPP
Sbjct 44 VTSAVGTSGSAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARAQANGNWPP 103
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL+ AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY++T MG FFVLGQAYE
Sbjct 104 EPTELNLFLAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYLLTLAMGTFFVLGQAYE 163
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGTSI SS YGSVFY+ TGFHG+HV GGLIAF+FL+ RT +SKFTPAQATA+IV
Sbjct 164 YIHLVEHGTSISSSVYGSVFYMTTGFHGMHVIGGLIAFVFLIARTKVSKFTPAQATAAIV 223
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWI LF IYFIR
Sbjct 224 VSYYWHFVDIVWIGLFATIYFIR 246
>gi|226307082|ref|YP_002767042.1| cytochrome c oxidase subunit III [Rhodococcus erythropolis PR4]
gi|226186199|dbj|BAH34303.1| cytochrome c oxidase subunit III [Rhodococcus erythropolis PR4]
Length=203
Score = 345 bits (886), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/203 (84%), Positives = 181/203 (90%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVGTSG+AIT RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARAQA GNWPP
Sbjct 1 MTSAVGTSGSAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARAQANGNWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNLY AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWY IT +MG FFV GQ YE
Sbjct 61 EPTELNLYLAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYTITLIMGAFFVSGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ GT+I SS YGSVFY+ TGFHGLHV GGLIAF+FL+ RT +SKFTPAQATA+IV
Sbjct 121 YYHLVHEGTTISSSVYGSVFYMTTGFHGLHVIGGLIAFVFLIARTRVSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF IYFIR
Sbjct 181 VSYYWHFVDIVWIALFATIYFIR 203
>gi|145225979|ref|YP_001136633.1| cytochrome c oxidase, subunit III [Mycobacterium gilvum PYR-GCK]
gi|145218442|gb|ABP47845.1| cytochrome c oxidase, subunit III [Mycobacterium gilvum PYR-GCK]
Length=197
Score = 341 bits (875), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 168/197 (86%), Positives = 180/197 (92%), Gaps = 1/197 (0%)
Query 7 TSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELN 66
TSGTAIT+RVHSLNRPNMV+VGTIVWLSSELMFFAGLFA YF+ARAQA WPPPPTELN
Sbjct 2 TSGTAITARVHSLNRPNMVAVGTIVWLSSELMFFAGLFAMYFTARAQAE-EWPPPPTELN 60
Query 67 LYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMS 126
L AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYV+TF+MGLFFVLGQ YEY +L+
Sbjct 61 LALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVVTFVMGLFFVLGQGYEYLSLVR 120
Query 127 HGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWH 186
GT+I SAYGSVFYL TGFHGLHV GGL+AFI LLVRT MSKFTPAQATA+IVVSYYWH
Sbjct 121 EGTTIAGSAYGSVFYLTTGFHGLHVIGGLVAFILLLVRTRMSKFTPAQATAAIVVSYYWH 180
Query 187 FVDIVWIALFTVIYFIR 203
FVDIVWIALF VIYF+R
Sbjct 181 FVDIVWIALFAVIYFVR 197
>gi|169629056|ref|YP_001702705.1| cytochrome c oxidase subunit III [Mycobacterium abscessus ATCC
19977]
gi|169241023|emb|CAM62051.1| Probable cytochrome c oxidase subunit III [Mycobacterium abscessus]
Length=206
Score = 340 bits (871), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 162/196 (83%), Positives = 178/196 (91%), Gaps = 0/196 (0%)
Query 8 SGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNL 67
+GTAIT RVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYF+ARAQ+GGNWPP PTELNL
Sbjct 11 AGTAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFTARAQSGGNWPPEPTELNL 70
Query 68 YQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSH 127
A+PVT VL+ASSFTCQMGVFAAERGD+FGLRRWYVIT +MG FFVLGQ YEY NL+
Sbjct 71 GLAIPVTAVLVASSFTCQMGVFAAERGDVFGLRRWYVITLIMGTFFVLGQGYEYMNLVHE 130
Query 128 GTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHF 187
GT+I SAYGS FYLATGFHGLHV GGL+AF++LL+RT MSKFTPAQAT++IVVSYYWHF
Sbjct 131 GTTIAGSAYGSTFYLATGFHGLHVIGGLVAFVYLLIRTRMSKFTPAQATSAIVVSYYWHF 190
Query 188 VDIVWIALFTVIYFIR 203
VDIVWIALF IYF+R
Sbjct 191 VDIVWIALFATIYFVR 206
>gi|119855051|ref|YP_935656.1| cytochrome c oxidase, subunit III [Mycobacterium sp. KMS]
gi|120404674|ref|YP_954503.1| cytochrome c oxidase subunit III [Mycobacterium vanbaalenii PYR-1]
gi|145225946|ref|YP_001136600.1| cytochrome c oxidase, subunit III [Mycobacterium gilvum PYR-GCK]
gi|119697769|gb|ABL94841.1| cytochrome c oxidase, subunit III [Mycobacterium sp. KMS]
gi|119957492|gb|ABM14497.1| cytochrome c oxidase, subunit III [Mycobacterium vanbaalenii
PYR-1]
gi|145218409|gb|ABP47812.1| cytochrome c oxidase, subunit III [Mycobacterium gilvum PYR-GCK]
Length=197
Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 166/197 (85%), Positives = 179/197 (91%), Gaps = 1/197 (0%)
Query 7 TSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELN 66
TSGTAIT+RVHSLNRPNMV+VGTIVWLSSELMFFAGLFA YF+ARAQA WPPPPTELN
Sbjct 2 TSGTAITARVHSLNRPNMVAVGTIVWLSSELMFFAGLFAMYFTARAQAD-EWPPPPTELN 60
Query 67 LYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMS 126
L AVPVTLVLIASSFTCQMGVFAAERGD+FGLRRWYV+TF+MGLFFVLGQ YEY +L+
Sbjct 61 LALAVPVTLVLIASSFTCQMGVFAAERGDVFGLRRWYVVTFVMGLFFVLGQGYEYLSLVR 120
Query 127 HGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWH 186
GT+I SAYGSVFYL TGFHGLHV GGL+AFI LL+RT MSKFTPAQATA+IVVSYYWH
Sbjct 121 EGTTIAGSAYGSVFYLTTGFHGLHVIGGLVAFILLLIRTRMSKFTPAQATAAIVVSYYWH 180
Query 187 FVDIVWIALFTVIYFIR 203
FVDIVWIALF IYF+R
Sbjct 181 FVDIVWIALFATIYFVR 197
>gi|118465650|ref|YP_881503.1| cytochrome C oxidase, subunit 3 [Mycobacterium avium 104]
gi|254774972|ref|ZP_05216488.1| cytochrome c oxidase, subunit 3 [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118166937|gb|ABK67834.1| cytochrome c oxidase, subunit 3 [Mycobacterium avium 104]
gi|336461916|gb|EGO40769.1| heme/copper-type cytochrome/quinol oxidase, subunit 3 [Mycobacterium
avium subsp. paratuberculosis S397]
Length=180
Score = 339 bits (870), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 166/180 (93%), Positives = 172/180 (96%), Gaps = 0/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPPPPTELNLYQAVPVTLVLIASSFT
Sbjct 1 MVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGKWPPPPTELNLYQAVPVTLVLIASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 143
CQMGVFAAERGD+FGLRRWYVITFLMGLFFVLGQ YEY +LM HGT+IP SAYGSVFYLA
Sbjct 61 CQMGVFAAERGDVFGLRRWYVITFLMGLFFVLGQGYEYYHLMGHGTTIPGSAYGSVFYLA 120
Query 144 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 203
TGFHGLHVTGGL+AFIFLL RT MSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR
Sbjct 121 TGFHGLHVTGGLVAFIFLLARTAMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 180
>gi|54023694|ref|YP_117936.1| putative cytochrome c oxidase subunit III [Nocardia farcinica
IFM 10152]
gi|62899935|sp|Q5YZ19.1|COX3_NOCFA RecName: Full=Probable cytochrome c oxidase subunit 3; AltName:
Full=Cytochrome aa3 subunit 3; AltName: Full=Cytochrome c
oxidase polypeptide III
gi|54015202|dbj|BAD56572.1| putative cytochrome c oxidase subunit III [Nocardia farcinica
IFM 10152]
Length=203
Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 164/203 (81%), Positives = 179/203 (89%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+T+AVGT G+AIT RVHSLNRPNMVSVGTI+WLSSELMFFAGLFA YF ARAQA GNWPP
Sbjct 1 MTTAVGTPGSAITQRVHSLNRPNMVSVGTIIWLSSELMFFAGLFAMYFVARAQANGNWPP 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL AVPVT VL+ASSFTCQMGVFAAE+GD+FGLRRWY IT LMG FFV GQ YE
Sbjct 61 EPTELNLKLAVPVTAVLVASSFTCQMGVFAAEKGDVFGLRRWYFITLLMGAFFVAGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ GTSI SSAYGSVFY+ TGFHGLHV GGLIAF+FLL+RT +SKFTPAQATA+IV
Sbjct 121 YYHLVHEGTSISSSAYGSVFYITTGFHGLHVIGGLIAFVFLLIRTKVSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWI LF IYF+R
Sbjct 181 VSYYWHFVDIVWIGLFATIYFVR 203
>gi|296166061|ref|ZP_06848508.1| cytochrome c oxidase, subunit III [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898582|gb|EFG78141.1| cytochrome c oxidase, subunit III [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=180
Score = 338 bits (868), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 166/180 (93%), Positives = 172/180 (96%), Gaps = 0/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPPPPTELNLYQAVPVTLVLIASSFT
Sbjct 1 MVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGKWPPPPTELNLYQAVPVTLVLIASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 143
CQMGVFAAERGD+FGLRRWYVITFLMGLFFV GQ YEY +L +HGT+IP SAYGSVFYLA
Sbjct 61 CQMGVFAAERGDVFGLRRWYVITFLMGLFFVCGQGYEYYHLATHGTTIPGSAYGSVFYLA 120
Query 144 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 203
TGFHGLHVTGGLIAFIFLL RTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR
Sbjct 121 TGFHGLHVTGGLIAFIFLLARTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 180
>gi|145223396|ref|YP_001134074.1| cytochrome c oxidase subunit III [Mycobacterium gilvum PYR-GCK]
gi|145215882|gb|ABP45286.1| cytochrome c oxidase, subunit III [Mycobacterium gilvum PYR-GCK]
Length=197
Score = 336 bits (861), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 164/197 (84%), Positives = 177/197 (90%), Gaps = 1/197 (0%)
Query 7 TSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELN 66
TSGTAIT+RVHSLNRPNMV+VGTIVWLSSELMFFAGLFA YF+ARAQA WPPPPTELN
Sbjct 2 TSGTAITARVHSLNRPNMVAVGTIVWLSSELMFFAGLFAMYFTARAQAD-EWPPPPTELN 60
Query 67 LYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMS 126
L AVPVTL+LIASSFTCQMGVFAAERGD+FGLRRWYV+T LMGL FVLGQ YEY +L+
Sbjct 61 LALAVPVTLILIASSFTCQMGVFAAERGDVFGLRRWYVVTLLMGLIFVLGQGYEYISLVR 120
Query 127 HGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWH 186
GT+I SAYGSVFYL TGFHGLHV GGL+AFI LL+RT MSKFTPAQATA+IVVSYYWH
Sbjct 121 EGTTIAGSAYGSVFYLTTGFHGLHVIGGLVAFILLLIRTRMSKFTPAQATAAIVVSYYWH 180
Query 187 FVDIVWIALFTVIYFIR 203
FVDIVWIALF IYF+R
Sbjct 181 FVDIVWIALFATIYFVR 197
>gi|254822835|ref|ZP_05227836.1| cytochrome c oxidase, subunit 3 [Mycobacterium intracellulare
ATCC 13950]
Length=180
Score = 335 bits (860), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 164/180 (92%), Positives = 171/180 (95%), Gaps = 0/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWLSSELMFFAGLFA YF+ARAQ+GG WPPPPTELNLYQAVPVTLVLIASSFT
Sbjct 1 MVSVGTIVWLSSELMFFAGLFAMYFTARAQSGGKWPPPPTELNLYQAVPVTLVLIASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 143
CQMGVFAAERGD+FGLRRWYVITFLMGLFFV GQ YEY +L +HGT+IP SAYGSVFYLA
Sbjct 61 CQMGVFAAERGDVFGLRRWYVITFLMGLFFVCGQGYEYFHLATHGTTIPGSAYGSVFYLA 120
Query 144 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 203
TGFHGLHVTGGL+AFIFLL RT MSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR
Sbjct 121 TGFHGLHVTGGLVAFIFLLARTAMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 180
>gi|262202947|ref|YP_003274155.1| cytochrome-c oxidase [Gordonia bronchialis DSM 43247]
gi|262086294|gb|ACY22262.1| Cytochrome-c oxidase [Gordonia bronchialis DSM 43247]
Length=205
Score = 328 bits (842), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/205 (80%), Positives = 179/205 (88%), Gaps = 2/205 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGN--W 58
+TSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARA + + W
Sbjct 1 MTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARANSPADIGW 60
Query 59 PPPPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQA 118
P PTELNL A+PVT VLI SS TCQMGVFAAERGD+FGLRRWYV+TFLMG FFV GQ
Sbjct 61 PAKPTELNLALAIPVTTVLILSSVTCQMGVFAAERGDVFGLRRWYVLTFLMGAFFVAGQG 120
Query 119 YEYRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATAS 178
YEY +L+ GT++ SSAYGSVFY+ATGFHGLHV GGL+AF+FLL+RT +SKFTPAQATA+
Sbjct 121 YEYYHLVHEGTTLSSSAYGSVFYMATGFHGLHVIGGLVAFVFLLIRTKLSKFTPAQATAA 180
Query 179 IVVSYYWHFVDIVWIALFTVIYFIR 203
IVVSYYWHFVDIVWI LF IYF+R
Sbjct 181 IVVSYYWHFVDIVWIGLFVTIYFVR 205
>gi|326382517|ref|ZP_08204208.1| cytochrome-c oxidase [Gordonia neofelifaecis NRRL B-59395]
gi|326198636|gb|EGD55819.1| cytochrome-c oxidase [Gordonia neofelifaecis NRRL B-59395]
Length=203
Score = 325 bits (832), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/203 (78%), Positives = 177/203 (88%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVG S TAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARA + WP
Sbjct 1 MTSAVGNSETAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARANSSDGWPQ 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPT LNL+ AVPVT +LI SSFTCQ GVFAAERGD++GLRRWY +T +MG FV+GQA E
Sbjct 61 PPTHLNLWLAVPVTTILILSSFTCQAGVFAAERGDVYGLRRWYTLTLVMGTIFVIGQATE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ GT++ SSAYGSVFY+ATGFHG+HV GGL+AF+FLLVRT +SKFTPAQATA+IV
Sbjct 121 YYSLVQEGTTLSSSAYGSVFYMATGFHGMHVIGGLLAFVFLLVRTRLSKFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVD+VWIALF VIYFIR
Sbjct 181 VSYYWHFVDVVWIALFVVIYFIR 203
>gi|108800257|ref|YP_640454.1| cytochrome c oxidase subunit III [Mycobacterium sp. MCS]
gi|108770676|gb|ABG09398.1| cytochrome c oxidase, subunit III [Mycobacterium sp. MCS]
Length=180
Score = 322 bits (824), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 157/180 (88%), Positives = 167/180 (93%), Gaps = 0/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWLSSELMFFAGLFA YF+ARAQAGG WPPPPTELNL AVPVTLVLIASSFT
Sbjct 1 MVSVGTIVWLSSELMFFAGLFAMYFTARAQAGGEWPPPPTELNLALAVPVTLVLIASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 143
CQMGVFAAERGD+FGLRRWYV+TFLMGLFFVLGQ YEY +L+ GT+IP SAYGSVFYLA
Sbjct 61 CQMGVFAAERGDVFGLRRWYVLTFLMGLFFVLGQLYEYYHLVHEGTTIPGSAYGSVFYLA 120
Query 144 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 203
TGFHGLHV GGL+AF+FLL RT MSKFTPAQATA+IVVSYYWHFVDIVWIALF VIYF+R
Sbjct 121 TGFHGLHVIGGLVAFLFLLARTKMSKFTPAQATAAIVVSYYWHFVDIVWIALFAVIYFVR 180
>gi|333918952|ref|YP_004492533.1| cytochrome c oxidase subunit 3 [Amycolicicoccus subflavus DQS3-9A1]
gi|333481173|gb|AEF39733.1| Cytochrome c oxidase subunit 3 [Amycolicicoccus subflavus DQS3-9A1]
Length=249
Score = 321 bits (823), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 156/203 (77%), Positives = 179/203 (89%), Gaps = 1/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSAVGTSGTAIT RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF +RAQA WPP
Sbjct 48 VTSAVGTSGTAITQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVSRAQAT-EWPP 106
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PPT LN+ A+ +T+VL+ASSFTCQ GVFAAERGD++GLRRWY+I+F MGLFFV+GQ YE
Sbjct 107 PPTHLNIPFALTITVVLVASSFTCQYGVFAAERGDVYGLRRWYLISFFMGLFFVIGQGYE 166
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y L+ GT++ SS YGSVF++ATGFHGLHV GGLIAF++++ RT MSKFTP+QATA+IV
Sbjct 167 YYELVHEGTTLSSSVYGSVFFMATGFHGLHVIGGLIAFLYIIARTKMSKFTPSQATAAIV 226
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVDIVWIALF IYFI+
Sbjct 227 VSYYWHFVDIVWIALFATIYFIQ 249
>gi|312140186|ref|YP_004007522.1| cytochrome c oxidase subunit iii [Rhodococcus equi 103S]
gi|311889525|emb|CBH48842.1| cytochrome c oxidase subunit III [Rhodococcus equi 103S]
Length=188
Score = 319 bits (818), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 154/188 (82%), Positives = 167/188 (89%), Gaps = 0/188 (0%)
Query 16 VHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTL 75
+HSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARAQA GNWPP PTELNL AVPVTL
Sbjct 1 MHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARAQANGNWPPEPTELNLTLAVPVTL 60
Query 76 VLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSA 135
VLIASSFTCQMGVFAAE+GD+FGLRRWY++T MG FFVLGQ YEY +L+ GT+I SS
Sbjct 61 VLIASSFTCQMGVFAAEKGDVFGLRRWYLVTLAMGTFFVLGQGYEYYHLVHEGTTISSSV 120
Query 136 YGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIAL 195
YGSVFY+ TGFHGLHV GGLIAF+FL+VRT +SKFTPAQATA+IVVSYYWHFVDIVWI L
Sbjct 121 YGSVFYMTTGFHGLHVIGGLIAFVFLIVRTKVSKFTPAQATAAIVVSYYWHFVDIVWIGL 180
Query 196 FTVIYFIR 203
F IYFIR
Sbjct 181 FATIYFIR 188
>gi|343924169|ref|ZP_08763732.1| cytochrome c oxidase subunit III [Gordonia alkanivorans NBRC
16433]
gi|343765974|dbj|GAA10658.1| cytochrome c oxidase subunit III [Gordonia alkanivorans NBRC
16433]
Length=188
Score = 311 bits (796), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 149/188 (80%), Positives = 163/188 (87%), Gaps = 0/188 (0%)
Query 16 VHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTL 75
+HSLNRPNMVSVGTIVWLSSELMFFAGLFA YF ARA + WPPPPTELNL A+PVT
Sbjct 1 MHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVARANSAVGWPPPPTELNLALAIPVTT 60
Query 76 VLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSA 135
VLI SS TCQMGVFAAERGD+FGLRRWYVIT +MG FVLGQAYEY L+ HGT++ S A
Sbjct 61 VLILSSVTCQMGVFAAERGDVFGLRRWYVITLIMGTIFVLGQAYEYTVLVGHGTTLASDA 120
Query 136 YGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIAL 195
YGSVFY+ TGFHGLHV GGLIAF++LL+RT +SKFTPAQATA+IVVSYYWHFVDIVWI L
Sbjct 121 YGSVFYMTTGFHGLHVIGGLIAFVYLLIRTKLSKFTPAQATAAIVVSYYWHFVDIVWIGL 180
Query 196 FTVIYFIR 203
F IYFIR
Sbjct 181 FVTIYFIR 188
>gi|331696571|ref|YP_004332810.1| cytochrome-c oxidase [Pseudonocardia dioxanivorans CB1190]
gi|326951260|gb|AEA24957.1| Cytochrome-c oxidase [Pseudonocardia dioxanivorans CB1190]
Length=200
Score = 310 bits (794), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 146/198 (74%), Positives = 174/198 (88%), Gaps = 1/198 (0%)
Query 7 TSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELN 66
T+ I++R+HSLNRPN+VS+GTIVWLSSELMFFAGLF+ YF+ARAQ G WPPPPTEL+
Sbjct 3 TAAPNISARIHSLNRPNLVSIGTIVWLSSELMFFAGLFSIYFTARAQNVGEWPPPPTELD 62
Query 67 LYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLM- 125
+ A+ VT+VL+ASSFTCQ GVFAAERGD+FGLRRWY++T +MG FVLGQA EYR L+
Sbjct 63 VPYALVVTIVLVASSFTCQFGVFAAERGDVFGLRRWYLLTLIMGALFVLGQANEYRTLIF 122
Query 126 SHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYW 185
H T+I SSAYG+VFYLATGFH LHVTGGL+AF++LL+RT +SKFTPAQATA+IVVSYYW
Sbjct 123 EHHTTIASSAYGTVFYLATGFHALHVTGGLVAFVYLLIRTKLSKFTPAQATAAIVVSYYW 182
Query 186 HFVDIVWIALFTVIYFIR 203
HFVD+VW+ LF VIYFIR
Sbjct 183 HFVDVVWVGLFAVIYFIR 200
>gi|324998039|ref|ZP_08119151.1| cytochrome c oxidase, subunit III [Pseudonocardia sp. P1]
Length=202
Score = 308 bits (790), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 143/199 (72%), Positives = 174/199 (88%), Gaps = 0/199 (0%)
Query 5 VGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTE 64
V T+ I++R+HSLNRPN+VS+GTIVWLSSELMFFAGLFA YF+ARAQ G WPPPPT
Sbjct 4 VTTAAPNISARIHSLNRPNLVSIGTIVWLSSELMFFAGLFAMYFTARAQNDGPWPPPPTH 63
Query 65 LNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNL 124
LN+ A+ +T+VL+ASSFTCQ GVFAAERGD+FGLRRWY++T MG FFV+GQAYEY L
Sbjct 64 LNVPYALAITIVLVASSFTCQFGVFAAERGDVFGLRRWYLLTLAMGTFFVVGQAYEYYEL 123
Query 125 MSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYY 184
+ GT++ +S+YG+VFY+ATGFHGLHV GGL+AF++L++RT +SKFTPAQATA+IVVSYY
Sbjct 124 VETGTTMAASSYGTVFYMATGFHGLHVIGGLVAFVYLIIRTRLSKFTPAQATAAIVVSYY 183
Query 185 WHFVDIVWIALFTVIYFIR 203
WHFVD+VWI LF VIYFIR
Sbjct 184 WHFVDVVWIGLFAVIYFIR 202
>gi|325676932|ref|ZP_08156604.1| cytochrome c oxidase, subunit III [Rhodococcus equi ATCC 33707]
gi|325552232|gb|EGD21922.1| cytochrome c oxidase, subunit III [Rhodococcus equi ATCC 33707]
Length=180
Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 147/180 (82%), Positives = 159/180 (89%), Gaps = 0/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWLSSELMFFAGLFA YF ARAQA GNWPP PTELNL AVPVTLVLIASSFT
Sbjct 1 MVSVGTIVWLSSELMFFAGLFAMYFVARAQANGNWPPEPTELNLTLAVPVTLVLIASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSSAYGSVFYLA 143
CQMGVFAAE+GD+FGLRRWY++T MG FFVLGQ YEY +L+ GT+I SS YGSVFY+
Sbjct 61 CQMGVFAAEKGDVFGLRRWYLVTLAMGTFFVLGQGYEYYHLVHEGTTISSSVYGSVFYMT 120
Query 144 TGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFIR 203
TGFHGLHV GGLIAF+FL+VRT +SKFTPAQATA+IVVSYYWHFVDIVWI LF IYFIR
Sbjct 121 TGFHGLHVIGGLIAFVFLIVRTKVSKFTPAQATAAIVVSYYWHFVDIVWIGLFATIYFIR 180
>gi|296393481|ref|YP_003658365.1| cytochrome-c oxidase [Segniliparus rotundus DSM 44985]
gi|296180628|gb|ADG97534.1| Cytochrome-c oxidase [Segniliparus rotundus DSM 44985]
Length=209
Score = 298 bits (763), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 144/195 (74%), Positives = 161/195 (83%), Gaps = 6/195 (3%)
Query 15 RVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARA------QAGGNWPPPPTELNLY 68
RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF RA NWPP PT LNL+
Sbjct 15 RVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVTRAGQAPALDGHKNWPPEPTHLNLF 74
Query 69 QAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHG 128
A+PVT VL+ SSFTCQ GVFAAERGD+FGLRRWY IT LMG FFV+GQ +EY NL + G
Sbjct 75 LAIPVTTVLVLSSFTCQWGVFAAERGDVFGLRRWYTITLLMGTFFVMGQGFEYTNLYAEG 134
Query 129 TSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFV 188
T + SSAYGSVF++ TGFHGLHV GGL+AF+ LLVRT MSKFTPAQAT++IVVSYYWHFV
Sbjct 135 TRLDSSAYGSVFFITTGFHGLHVIGGLVAFVLLLVRTKMSKFTPAQATSAIVVSYYWHFV 194
Query 189 DIVWIALFTVIYFIR 203
D+VWIALF IYF++
Sbjct 195 DVVWIALFATIYFVQ 209
>gi|317506584|ref|ZP_07964376.1| cytochrome c oxidase subunit 3 protein [Segniliparus rugosus
ATCC BAA-974]
gi|316255093|gb|EFV14371.1| cytochrome c oxidase subunit 3 protein [Segniliparus rugosus
ATCC BAA-974]
Length=209
Score = 297 bits (761), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 145/195 (75%), Positives = 158/195 (82%), Gaps = 6/195 (3%)
Query 15 RVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARA------QAGGNWPPPPTELNLY 68
RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA YF RA NWPP PTELNL
Sbjct 15 RVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMYFVTRAGQAPALDGHKNWPPEPTELNLA 74
Query 69 QAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHG 128
A+PVT VLI SSFTCQ GVFAAERGD+FGLRRWY +T MGLFFV GQ YEY NL G
Sbjct 75 LAIPVTTVLILSSFTCQWGVFAAERGDVFGLRRWYTLTLFMGLFFVCGQGYEYFNLYREG 134
Query 129 TSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFV 188
T + SSAYGSVF++ TGFHGLHV GGL+AF+ LL RT MSKFTPAQAT++IVVSYYWHFV
Sbjct 135 TRLDSSAYGSVFFITTGFHGLHVIGGLVAFVLLLARTKMSKFTPAQATSAIVVSYYWHFV 194
Query 189 DIVWIALFTVIYFIR 203
D+VWIALF IYF++
Sbjct 195 DVVWIALFATIYFVK 209
>gi|319950678|ref|ZP_08024579.1| cytochrome c oxidase [Dietzia cinnamea P4]
gi|319435661|gb|EFV90880.1| cytochrome c oxidase [Dietzia cinnamea P4]
Length=203
Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 139/203 (69%), Positives = 171/203 (85%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAV SG+A+ RVHSLNRPNMVSVGTI+WLS ELMFFAGLFA YF ++A +GG+WP
Sbjct 1 MTSAVDNSGSAMAQRVHSLNRPNMVSVGTIIWLSQELMFFAGLFAMYFVSKANSGGDWPS 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PT LN+ A+ +T++L+ASSFTCQ+GVFAAE+GD+FGLRRWYVI+ +MG F++GQAYE
Sbjct 61 YPTHLNVPFALTITVILVASSFTCQLGVFAAEQGDVFGLRRWYVISAVMGTVFLIGQAYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y L GT+I SS YGSVF++ TGFHGLHV G+IAF+ L++RT MS+FTPAQATA+IV
Sbjct 121 YVMLYLEGTTISSSVYGSVFFITTGFHGLHVAAGVIAFVVLVMRTTMSRFTPAQATAAIV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVD+VWI LF IYFI+
Sbjct 181 VSYYWHFVDVVWIGLFVTIYFIQ 203
>gi|257055118|ref|YP_003132950.1| heme/copper-type cytochrome/quinol oxidase, subunit 3 [Saccharomonospora
viridis DSM 43017]
gi|256584990|gb|ACU96123.1| heme/copper-type cytochrome/quinol oxidase, subunit 3 [Saccharomonospora
viridis DSM 43017]
Length=209
Score = 291 bits (746), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 141/206 (69%), Positives = 169/206 (83%), Gaps = 7/206 (3%)
Query 4 AVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAG-GNWPPP- 61
AV T+ +I+ RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA +F+ +AQ G WPPP
Sbjct 3 AVTTAAPSISQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMFFTVKAQNDTGMWPPPN 62
Query 62 -----PTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLG 116
L+L QA+P TL+L+ASSFTCQ+GVFAAERGD+FGLRRWY++T LMG FV G
Sbjct 63 PVTGEQIHLSLGQALPFTLILVASSFTCQLGVFAAERGDVFGLRRWYLLTLLMGTVFVCG 122
Query 117 QAYEYRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQAT 176
QA+EY L+S G ++PS AYG+VF++ TGFHG+HV GGLIAF+F+L+RT MSKFTPAQAT
Sbjct 123 QAWEYAILISEGVTMPSGAYGTVFFMTTGFHGMHVIGGLIAFVFVLIRTKMSKFTPAQAT 182
Query 177 ASIVVSYYWHFVDIVWIALFTVIYFI 202
+IVVSYYWHFVD+VW+ LF VIY I
Sbjct 183 TAIVVSYYWHFVDVVWVGLFAVIYLI 208
>gi|291004312|ref|ZP_06562285.1| cytochrome c oxidase subunit III [Saccharopolyspora erythraea
NRRL 2338]
Length=189
Score = 290 bits (743), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 140/188 (75%), Positives = 162/188 (87%), Gaps = 1/188 (0%)
Query 16 VHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTL 75
+HSLNRPNMVSVGTIVWL+SELMFFAGLFA +F+ +AQ G WPPPPT LNL A+P T+
Sbjct 1 MHSLNRPNMVSVGTIVWLASELMFFAGLFAMFFTVKAQNEGEWPPPPTHLNLPYALPFTI 60
Query 76 VLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMS-HGTSIPSS 134
+L+ASSFTCQ GVFAAERGD++GLRRWYVIT +MG FVLGQA EY L++ H T+I SS
Sbjct 61 ILVASSFTCQWGVFAAERGDVYGLRRWYVITLIMGTVFVLGQAGEYYQLITEHHTTIASS 120
Query 135 AYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIA 194
AYG+VFY+ TGFHGLHV GGLIAF+FL+VRT +SKFTPAQA A+IVVSYYWHFVDIVWI
Sbjct 121 AYGTVFYMTTGFHGLHVIGGLIAFVFLIVRTRLSKFTPAQAIAAIVVSYYWHFVDIVWIG 180
Query 195 LFTVIYFI 202
LF VIY +
Sbjct 181 LFAVIYLV 188
>gi|284991759|ref|YP_003410313.1| cytochrome-c oxidase [Geodermatophilus obscurus DSM 43160]
gi|284065004|gb|ADB75942.1| Cytochrome-c oxidase [Geodermatophilus obscurus DSM 43160]
Length=208
Score = 290 bits (742), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 141/204 (70%), Positives = 169/204 (83%), Gaps = 1/204 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VT+A S T TSRVHSL RPN+VSVGTI+WLSSELMFFAGLFA YF+ARA+A WPP
Sbjct 5 VTTAPVASSTFDTSRVHSLTRPNLVSVGTIIWLSSELMFFAGLFAMYFTARARALEGWPP 64
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELNL A+ T++L+ASS TCQ+GVFAAE+G+++GLRRW+ ITF+MGL FVL QA E
Sbjct 65 EPTELNLPYALVFTIILVASSVTCQLGVFAAEQGNVYGLRRWFTITFVMGLVFVLAQANE 124
Query 121 YRNLMS-HGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASI 179
YR L++ H T+I SS YGSVFYL TGFH LHV GGL+AF++LL+R+ M +FTPAQATA+I
Sbjct 125 YRVLVTEHATTISSSTYGSVFYLTTGFHALHVIGGLVAFVYLLIRSTMGRFTPAQATAAI 184
Query 180 VVSYYWHFVDIVWIALFTVIYFIR 203
VVSYYWHFVD+VW+ LF IY IR
Sbjct 185 VVSYYWHFVDVVWVGLFATIYLIR 208
>gi|302525353|ref|ZP_07277695.1| cytochrome aa3 quinol oxidase, subunit III [Streptomyces sp.
AA4]
gi|302434248|gb|EFL06064.1| cytochrome aa3 quinol oxidase, subunit III [Streptomyces sp.
AA4]
Length=208
Score = 286 bits (733), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 138/205 (68%), Positives = 166/205 (81%), Gaps = 6/205 (2%)
Query 4 AVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQ--AGGNWPPP 61
+V T+ I+ RVHSLNRPNMVSVGT+VWLSSELMFFAGLFA +F+ +AQ AG +WPPP
Sbjct 3 SVTTAAPTISQRVHSLNRPNMVSVGTVVWLSSELMFFAGLFAMFFTVKAQNPAGASWPPP 62
Query 62 ----PTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQ 117
LN+ A+P T++L+ SS TCQ GVFAAERGD++GLRRWY++T +MG FV GQ
Sbjct 63 LHGEEFHLNVAYAIPFTVILVLSSLTCQFGVFAAERGDVYGLRRWYIVTLIMGAIFVFGQ 122
Query 118 AYEYRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATA 177
A EY NL+ G +IPS +G+VFYLATGFHGLHV GGLIAF+FLLVRT +SKFTPAQAT+
Sbjct 123 ANEYHNLVEEGLTIPSGPFGTVFYLATGFHGLHVIGGLIAFVFLLVRTKLSKFTPAQATS 182
Query 178 SIVVSYYWHFVDIVWIALFTVIYFI 202
+IVVSYYWHFVDIVW+ LF VIY +
Sbjct 183 AIVVSYYWHFVDIVWVGLFAVIYIL 207
>gi|340525526|gb|AEK40731.1| cytochrome C oxidase subunit III [Amycolatopsis mediterranei
S699]
Length=204
Score = 285 bits (728), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 135/201 (68%), Positives = 164/201 (82%), Gaps = 5/201 (2%)
Query 7 TSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQ-AGGNWPPP---- 61
T+ I+ RVHSLNRPNMVSVGTIVWLSSELMFFAGLFA +F+ +AQ + G WPPP
Sbjct 3 TAAPTISQRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAMFFTVKAQNSSGQWPPPLHDE 62
Query 62 PTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEY 121
P LN+ A+P T++L+ SS TCQ GVFAAERGD++GLRRWY++T +MG FV GQA EY
Sbjct 63 PFHLNVAYAIPFTVILVLSSLTCQFGVFAAERGDVYGLRRWYIVTLIMGAIFVAGQANEY 122
Query 122 RNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVV 181
NL+ G +IPS +G+VF+LATGFHGLHV GGLIAF++LL+RT +SKFTPAQAT++IVV
Sbjct 123 HNLVEEGMTIPSGPFGTVFFLATGFHGLHVIGGLIAFVYLLIRTKLSKFTPAQATSAIVV 182
Query 182 SYYWHFVDIVWIALFTVIYFI 202
SYYWHFVDIVW+ LF VIY +
Sbjct 183 SYYWHFVDIVWVGLFGVIYLL 203
>gi|256375511|ref|YP_003099171.1| cytochrome C oxidase subunit III [Actinosynnema mirum DSM 43827]
gi|255919814|gb|ACU35325.1| cytochrome c oxidase subunit III [Actinosynnema mirum DSM 43827]
Length=204
Score = 279 bits (714), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 138/198 (70%), Positives = 160/198 (81%), Gaps = 2/198 (1%)
Query 5 VGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTE 64
V T+ +IT RVHSLNRPNMVSVGT+VWLSSELMFFAGLFA +F+ +AQ G WPP
Sbjct 8 VTTAAPSITQRVHSLNRPNMVSVGTVVWLSSELMFFAGLFAMFFTVKAQHEGEWPP--VH 65
Query 65 LNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNL 124
LN+ A+ T +L+ASSFTCQ GVFAAERGD+FGLRRWY +T L+G FV GQA EY L
Sbjct 66 LNVPYAMLFTTILVASSFTCQWGVFAAERGDVFGLRRWYGLTVLLGAIFVAGQAGEYATL 125
Query 125 MSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYY 184
+ G +IPS AYG+VFYL TGFHGLHV GGLIAF +LLVRT +SKFTPAQAT++IVVSYY
Sbjct 126 IGEGVTIPSGAYGTVFYLTTGFHGLHVIGGLIAFGYLLVRTKLSKFTPAQATSAIVVSYY 185
Query 185 WHFVDIVWIALFTVIYFI 202
WHFVD+VWI LF VIY +
Sbjct 186 WHFVDVVWIGLFAVIYLV 203
>gi|340794098|ref|YP_004759561.1| cytochrome C oxidase subunit III [Corynebacterium variabile DSM
44702]
gi|340534008|gb|AEK36488.1| cytochrome C oxidase subunit III [Corynebacterium variabile DSM
44702]
Length=293
Score = 279 bits (713), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/203 (66%), Positives = 167/203 (83%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
VTSAVG G A RV +LNRPNMVSVGTIV+LS ELMFFAGLFA YF ++A +GG+WP
Sbjct 91 VTSAVGNQGMAAPQRVATLNRPNMVSVGTIVFLSQELMFFAGLFAMYFVSKANSGGDWPS 150
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELN+ A+ +T++L++SSFT Q GVFAAERGD+FGLR+WY +T ++G F++GQAYE
Sbjct 151 HPTELNVPFALGITVILVSSSFTAQWGVFAAERGDVFGLRKWYALTIVLGAIFLIGQAYE 210
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGT+I SS YGSVF++ TGFHG HV G++AF+ +L+RT SKFTPAQATA++V
Sbjct 211 YIHLVEHGTTISSSVYGSVFFITTGFHGAHVLAGVLAFVVVLLRTAKSKFTPAQATAAVV 270
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVD+VWI L+ IYFI+
Sbjct 271 VSYYWHFVDVVWIGLWITIYFIQ 293
>gi|291301586|ref|YP_003512864.1| cytochrome-c oxidase [Stackebrandtia nassauensis DSM 44728]
gi|290570806|gb|ADD43771.1| Cytochrome-c oxidase [Stackebrandtia nassauensis DSM 44728]
Length=200
Score = 278 bits (711), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 134/189 (71%), Positives = 153/189 (81%), Gaps = 0/189 (0%)
Query 15 RVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVT 74
R+HSL RPNMVSVGTIVWLSSELMFFA LFA YFS RA A W LN+ A T
Sbjct 12 RIHSLTRPNMVSVGTIVWLSSELMFFAALFAMYFSIRAAAPELWEEHTKHLNIPYAAVFT 71
Query 75 LVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMSHGTSIPSS 134
L+L+ASSFTCQMGVF AERGD++GLRRW+ ITFLMGL FVLGQ EYR L+S G +I +
Sbjct 72 LILVASSFTCQMGVFCAERGDVYGLRRWFTITFLMGLVFVLGQVNEYRTLVSEGIAINTD 131
Query 135 AYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIA 194
YG++FYL TGFHGLHVTGGLIAFI L+RT M +FTPAQAT++IVVSYYWHFVD+VWIA
Sbjct 132 GYGTMFYLTTGFHGLHVTGGLIAFIIYLIRTTMGRFTPAQATSAIVVSYYWHFVDVVWIA 191
Query 195 LFTVIYFIR 203
LF +IYF+R
Sbjct 192 LFAMIYFLR 200
>gi|258653412|ref|YP_003202568.1| cytochrome-c oxidase [Nakamurella multipartita DSM 44233]
gi|258556637|gb|ACV79579.1| Cytochrome-c oxidase [Nakamurella multipartita DSM 44233]
Length=206
Score = 276 bits (705), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 133/195 (69%), Positives = 159/195 (82%), Gaps = 1/195 (0%)
Query 10 TAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQ 69
+A ++RVH+LNRPNMVSVG IVWL+SELMFFAGLF YF+ RAQ G +PP PTEL++
Sbjct 12 SAFSARVHTLNRPNMVSVGVIVWLASELMFFAGLFGVYFTIRAQYEGEFPPAPTELDITY 71
Query 70 AVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMS-HG 128
A T++L+ASSFTCQ GVFAAERGD+F LRRWYV+T +MGL FVLGQA EY L++ H
Sbjct 72 ATFFTVILVASSFTCQWGVFAAERGDVFALRRWYVLTLVMGLIFVLGQANEYHTLVTHHD 131
Query 129 TSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFV 188
T++ SS YG+ FYL TGFHGLHV GGLIAF+ L+ +T +SKFTPAQAT +IVVSYYWHFV
Sbjct 132 TTLASSPYGTAFYLTTGFHGLHVIGGLIAFVLLIGKTKISKFTPAQATGAIVVSYYWHFV 191
Query 189 DIVWIALFTVIYFIR 203
D+VWI LF IY IR
Sbjct 192 DVVWIGLFLTIYIIR 206
>gi|334563273|ref|ZP_08516264.1| cytochrome c oxidase subunit III [Corynebacterium bovis DSM 20582]
Length=203
Score = 274 bits (701), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 131/203 (65%), Positives = 161/203 (80%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAVG GTA T RV +LNRPNMVSVGTIV+LS ELMFFAGLFA YF ++A + GNWP
Sbjct 1 MTSAVGNPGTAATRRVATLNRPNMVSVGTIVFLSQELMFFAGLFAMYFVSKANSQGNWPS 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELN+ A +T+VL+ SSF Q GVFAAERGD+FGLRRWY +T +MGL F++GQ YE
Sbjct 61 EPTELNVPYAAVITVVLVGSSFAAQWGVFAAERGDVFGLRRWYALTVVMGLIFLIGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L GT + SS YGSVF++ TGFHG HV G++AF+ +++RT SKFTPAQATA++V
Sbjct 121 YFHLYEEGTRVDSSVYGSVFFITTGFHGAHVLAGVLAFVVIILRTMKSKFTPAQATAAVV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVD+VWI L+ IY I+
Sbjct 181 VSYYWHFVDVVWIGLWVTIYLIQ 203
>gi|134098267|ref|YP_001103928.1| cytochrome c oxidase subunit III [Saccharopolyspora erythraea
NRRL 2338]
gi|133910890|emb|CAM01003.1| cytochrome c oxidase subunit III [Saccharopolyspora erythraea
NRRL 2338]
Length=181
Score = 273 bits (699), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 133/180 (74%), Positives = 154/180 (86%), Gaps = 1/180 (0%)
Query 24 MVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPPPPTELNLYQAVPVTLVLIASSFT 83
MVSVGTIVWL+SELMFFAGLFA +F+ +AQ G WPPPPT LNL A+P T++L+ASSFT
Sbjct 1 MVSVGTIVWLASELMFFAGLFAMFFTVKAQNEGEWPPPPTHLNLPYALPFTIILVASSFT 60
Query 84 CQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYEYRNLMS-HGTSIPSSAYGSVFYL 142
CQ GVFAAERGD++GLRRWYVIT +MG FVLGQA EY L++ H T+I SSAYG+VFY+
Sbjct 61 CQWGVFAAERGDVYGLRRWYVITLIMGTVFVLGQAGEYYQLITEHHTTIASSAYGTVFYM 120
Query 143 ATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIVVSYYWHFVDIVWIALFTVIYFI 202
TGFHGLHV GGLIAF+FL+VRT +SKFTPAQA A+IVVSYYWHFVDIVWI LF VIY +
Sbjct 121 TTGFHGLHVIGGLIAFVFLIVRTRLSKFTPAQAIAAIVVSYYWHFVDIVWIGLFAVIYLV 180
>gi|336325315|ref|YP_004605281.1| cytochrome C oxidase subunit III [Corynebacterium resistens DSM
45100]
gi|336101297|gb|AEI09117.1| cytochrome C oxidase subunit III [Corynebacterium resistens DSM
45100]
Length=203
Score = 270 bits (691), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 129/203 (64%), Positives = 163/203 (81%), Gaps = 0/203 (0%)
Query 1 VTSAVGTSGTAITSRVHSLNRPNMVSVGTIVWLSSELMFFAGLFAFYFSARAQAGGNWPP 60
+TSAV G A RV +LNRPNMVSVGTIV+LS ELMFFAGLFA YF ++A +GG+WP
Sbjct 1 MTSAVENPGMAAPQRVATLNRPNMVSVGTIVFLSQELMFFAGLFAMYFVSKANSGGDWPS 60
Query 61 PPTELNLYQAVPVTLVLIASSFTCQMGVFAAERGDIFGLRRWYVITFLMGLFFVLGQAYE 120
PTELN+ A +T++L++SSFT Q GVFAAERGD+F LRRWY ++ L+G F++GQ YE
Sbjct 61 HPTELNVPFAATITIILVSSSFTAQWGVFAAERGDVFALRRWYALSALLGTVFLIGQGYE 120
Query 121 YRNLMSHGTSIPSSAYGSVFYLATGFHGLHVTGGLIAFIFLLVRTGMSKFTPAQATASIV 180
Y +L+ HGT+IP S YGSVF++ TGFHG HV G++AF+ +L+RT SKFTPAQATA++V
Sbjct 121 YFHLVQHGTTIPGSVYGSVFFITTGFHGAHVLAGVLAFVVVLLRTFKSKFTPAQATAAVV 180
Query 181 VSYYWHFVDIVWIALFTVIYFIR 203
VSYYWHFVD+VWI L+ IYFI+
Sbjct 181 VSYYWHFVDVVWIGLWITIYFIQ 203
Lambda K H
0.329 0.140 0.443
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 223603106580
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40