BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2197c Length=214 Score E Sequences producing significant alignments: (Bits) Value gi|15609334|ref|NP_216713.1| transmembrane protein [Mycobacteriu... 416 1e-114 gi|31793376|ref|NP_855869.1| transmembrane protein [Mycobacteriu... 415 2e-114 gi|148823404|ref|YP_001288158.1| transmembrane protein [Mycobact... 413 8e-114 gi|340627202|ref|YP_004745654.1| hypothetical protein MCAN_22191... 405 2e-111 gi|289574883|ref|ZP_06455110.1| transmembrane protein [Mycobacte... 329 1e-88 gi|254774967|ref|ZP_05216483.1| hypothetical protein MaviaA2_098... 260 7e-68 gi|118464217|ref|YP_881498.1| hypothetical protein MAV_2294 [Myc... 260 1e-67 gi|41408035|ref|NP_960871.1| hypothetical protein MAP1937c [Myco... 260 1e-67 gi|254822831|ref|ZP_05227832.1| hypothetical protein MintA_23079... 256 1e-66 gi|15827401|ref|NP_301664.1| hypothetical protein ML0878 [Mycoba... 247 8e-64 gi|296166067|ref|ZP_06848514.1| transmembrane protein [Mycobacte... 247 8e-64 gi|118618839|ref|YP_907171.1| transmembrane protein [Mycobacteri... 238 6e-61 gi|183983232|ref|YP_001851523.1| transmembrane protein [Mycobact... 237 7e-61 gi|342859908|ref|ZP_08716561.1| hypothetical protein MCOL_13553 ... 236 2e-60 gi|240168258|ref|ZP_04746917.1| putative transmembrane protein [... 231 6e-59 gi|333990345|ref|YP_004522959.1| transmembrane protein [Mycobact... 158 6e-37 gi|118472757|ref|YP_888541.1| hypothetical protein MSMEG_4264 [M... 113 2e-23 gi|120404532|ref|YP_954361.1| hypothetical protein Mvan_3561 [My... 112 3e-23 gi|315443885|ref|YP_004076764.1| hypothetical protein Mspyr1_228... 108 5e-22 gi|145223539|ref|YP_001134217.1| hypothetical protein Mflv_2952 ... 107 8e-22 gi|108800261|ref|YP_640458.1| hypothetical protein Mmcs_3295 [My... 107 9e-22 gi|169629051|ref|YP_001702700.1| hypothetical protein MAB_1964 [... 104 7e-21 gi|303253513|ref|ZP_07339652.1| arginine transporter permease su... 36.6 2.2 gi|254514493|ref|ZP_05126554.1| hypothetical protein NOR53_1894 ... 35.8 4.2 gi|52424277|ref|YP_087414.1| arginine transporter permease subun... 35.8 4.7 gi|167855355|ref|ZP_02478122.1| ArtM protein [Haemophilus parasu... 35.4 6.0 gi|322513521|ref|ZP_08066622.1| arginine ABC superfamily ATP bin... 35.0 6.7 gi|303250563|ref|ZP_07336760.1| arginine transporter permease su... 35.0 7.8 gi|53728960|ref|ZP_00348280.1| COG4160: ABC-type arginine/histid... 35.0 8.2 gi|345002250|ref|YP_004805104.1| glycoside hydrolase family prot... 34.7 9.1 gi|342864557|ref|ZP_08721136.1| amino ABC transporter, permease ... 34.7 9.3 gi|188591210|ref|YP_001795810.1| glycosyl hydrolase, bnr repeat ... 34.7 10.0 >gi|15609334|ref|NP_216713.1| transmembrane protein [Mycobacterium tuberculosis H37Rv] gi|15841688|ref|NP_336725.1| hypothetical protein MT2253 [Mycobacterium tuberculosis CDC1551] gi|148662014|ref|YP_001283537.1| putative transmembrane protein [Mycobacterium tuberculosis H37Ra] 66 more sequence titles Length=214 Score = 416 bits (1069), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 214/214 (100%), Positives = 214/214 (100%), Gaps = 0/214 (0%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP Sbjct 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV Sbjct 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS Sbjct 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 Query 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS 214 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS Sbjct 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS 214 >gi|31793376|ref|NP_855869.1| transmembrane protein [Mycobacterium bovis AF2122/97] gi|121638078|ref|YP_978302.1| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990572|ref|YP_002645259.1| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo 172] 6 more sequence titles Length=214 Score = 415 bits (1066), Expect = 2e-114, Method: Compositional matrix adjust. Identities = 213/214 (99%), Positives = 214/214 (100%), Gaps = 0/214 (0%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP Sbjct 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV Sbjct 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS Sbjct 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 Query 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS 214 WISYGLAGVVTAGMPVIEWLY+RQLRRVVAPQSS Sbjct 181 WISYGLAGVVTAGMPVIEWLYSRQLRRVVAPQSS 214 >gi|148823404|ref|YP_001288158.1| transmembrane protein [Mycobacterium tuberculosis F11] gi|148721931|gb|ABR06556.1| conserved transmembrane protein [Mycobacterium tuberculosis F11] Length=214 Score = 413 bits (1062), Expect = 8e-114, Method: Compositional matrix adjust. Identities = 213/214 (99%), Positives = 213/214 (99%), Gaps = 0/214 (0%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP Sbjct 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIG GHPAKRAV Sbjct 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGPGHPAKRAV 120 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS Sbjct 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 Query 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS 214 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS Sbjct 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS 214 >gi|340627202|ref|YP_004745654.1| hypothetical protein MCAN_22191 [Mycobacterium canettii CIPT 140010059] gi|340005392|emb|CCC44551.1| putative conserved transmembrane protein [Mycobacterium canettii CIPT 140010059] Length=216 Score = 405 bits (1042), Expect = 2e-111, Method: Compositional matrix adjust. Identities = 209/210 (99%), Positives = 209/210 (99%), Gaps = 0/210 (0%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP Sbjct 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV Sbjct 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS Sbjct 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 Query 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVA 210 WISYGLAG VTAGMPVIEWLYARQLRRVVA Sbjct 181 WISYGLAGAVTAGMPVIEWLYARQLRRVVA 210 >gi|289574883|ref|ZP_06455110.1| transmembrane protein [Mycobacterium tuberculosis K85] gi|289539314|gb|EFD43892.1| transmembrane protein [Mycobacterium tuberculosis K85] Length=193 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 191/214 (90%), Positives = 192/214 (90%), Gaps = 21/214 (9%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP Sbjct 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV Sbjct 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAA Sbjct 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAAV----------- 169 Query 181 WISYGLAGVVTAGMPVIEWLYARQLRRVVAPQSS 214 TAGMPVIEWLY+RQLRRVVAPQSS Sbjct 170 ----------TAGMPVIEWLYSRQLRRVVAPQSS 193 >gi|254774967|ref|ZP_05216483.1| hypothetical protein MaviaA2_09884 [Mycobacterium avium subsp. avium ATCC 25291] Length=210 Score = 260 bits (665), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 139/214 (65%), Positives = 160/214 (75%), Gaps = 6/214 (2%) Query 1 MVSRYSAYRRG--PDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAG 58 MVSRYSAYRRG D +SP+V+DRIL+GACAA++L GVSVAA VAL DLGRGFH+ A Sbjct 1 MVSRYSAYRRGLGDDTVSPEVVDRILIGACAAIYLALLGVSVAACVALADLGRGFHKAAS 60 Query 59 NPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKR 118 +PHTTWVLYAVI+VSAL+I GAIP+LLRARRM++AEP R A R +G+G R Sbjct 61 SPHTTWVLYAVIIVSALIIAGAIPILLRARRMSQAEPTARAMTAPARPPVRLGAG--VAR 118 Query 119 AVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDG 178 E AP H A WS EAVDRIWLRGTV+LT +G ALIAVA ATYLMAVGHDG Sbjct 119 PATERAP--HTPATTPDVGWSGEAVDRIWLRGTVILTGTMGAALIAVATATYLMAVGHDG 176 Query 179 PSWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQ 212 SW+ YG AGV+TA MPV+EWL+ RQLR VA Q Sbjct 177 SSWVGYGFAGVITAAMPVVEWLHIRQLREAVAEQ 210 >gi|118464217|ref|YP_881498.1| hypothetical protein MAV_2294 [Mycobacterium avium 104] gi|118165504|gb|ABK66401.1| conserved hypothetical protein [Mycobacterium avium 104] Length=210 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 139/214 (65%), Positives = 160/214 (75%), Gaps = 6/214 (2%) Query 1 MVSRYSAYRRG--PDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAG 58 MVS+YSAYRRG D +SP+VIDRIL+GACAA++L GVSVAA VAL DLGRGFH+ A Sbjct 1 MVSKYSAYRRGLGDDTVSPEVIDRILIGACAAIYLALLGVSVAACVALADLGRGFHKAAS 60 Query 59 NPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKR 118 +PHTTWVLYAVI+VSAL+I GAIP+LLRARRM++AEP R A R +G+G R Sbjct 61 SPHTTWVLYAVIIVSALIIAGAIPILLRARRMSQAEPTARAMTAPARPPVRLGAG--IAR 118 Query 119 AVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDG 178 E AP H A WS EAVDRIWLRGTV+LT +G ALIAVA ATYLMAVGHDG Sbjct 119 PATERAP--HTPATPPDVGWSGEAVDRIWLRGTVILTGTMGAALIAVATATYLMAVGHDG 176 Query 179 PSWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQ 212 SW+ YG AGV+TA MPV+EWL+ RQLR VA Q Sbjct 177 SSWVGYGFAGVITAAMPVVEWLHIRQLREAVAEQ 210 >gi|41408035|ref|NP_960871.1| hypothetical protein MAP1937c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396390|gb|AAS04254.1| hypothetical protein MAP_1937c [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461921|gb|EGO40774.1| Protein of unknown function (DUF2561) [Mycobacterium avium subsp. paratuberculosis S397] Length=210 Score = 260 bits (664), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 140/214 (66%), Positives = 161/214 (76%), Gaps = 6/214 (2%) Query 1 MVSRYSAYRRG--PDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAG 58 MVSRYSAYRRG D +SP+VIDRIL+GACAA++L GVSVAA VAL DLGRGFH+ A Sbjct 1 MVSRYSAYRRGLGDDTVSPEVIDRILIGACAAIYLALLGVSVAACVALADLGRGFHKAAS 60 Query 59 NPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKR 118 +PHTTWVLYAVI+VSAL+I GAIP+LLRARR+++AEP R A R +G+G R Sbjct 61 SPHTTWVLYAVIIVSALIIAGAIPILLRARRISQAEPTARAMTAPARPPVRLGAG--VAR 118 Query 119 AVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDG 178 E AP HA A WS EAVDRIWLRGTV+LT +G ALIAVA ATYLMAVGHDG Sbjct 119 PATERAP--HAPATTPDVGWSGEAVDRIWLRGTVILTGTMGAALIAVATATYLMAVGHDG 176 Query 179 PSWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQ 212 SW+ YG AGV+TA MPV+EWL+ RQLR VA Q Sbjct 177 SSWVGYGFAGVITAAMPVVEWLHIRQLRGAVAEQ 210 >gi|254822831|ref|ZP_05227832.1| hypothetical protein MintA_23079 [Mycobacterium intracellulare ATCC 13950] Length=214 Score = 256 bits (655), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 137/217 (64%), Positives = 163/217 (76%), Gaps = 14/217 (6%) Query 1 MVSRYSAYRRG--PDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAG 58 MVSRYSAYRRG D +SP+VIDRIL+GACAA++LV GVSVAAAVAL DLGRGFH+ A Sbjct 1 MVSRYSAYRRGIGDDTVSPEVIDRILLGACAAIYLVLLGVSVAAAVALTDLGRGFHKSAS 60 Query 59 NPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHP--- 115 +PHTTWVLYAVI+VSAL+I GAIP+LLRARRM+++EPA R A R + S P Sbjct 61 SPHTTWVLYAVIIVSALIIAGAIPILLRARRMSQSEPAARAMTAPNRPPVRLMSQAPRTA 120 Query 116 ---AKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLM 172 A++A ++AP + AEWS E VDR+WLRGTV+LT +G ALIAVA ATYLM Sbjct 121 AERARQATVQAAPPK------TDAEWSGETVDRVWLRGTVILTGTMGAALIAVATATYLM 174 Query 173 AVGHDGPSWISYGLAGVVTAGMPVIEWLYARQLRRVV 209 AVGHDG SW +Y AG +TA MP +EWL+ RQLRRVV Sbjct 175 AVGHDGASWTAYVFAGAITAAMPAVEWLHIRQLRRVV 211 >gi|15827401|ref|NP_301664.1| hypothetical protein ML0878 [Mycobacterium leprae TN] gi|221229878|ref|YP_002503294.1| hypothetical protein MLBr_00878 [Mycobacterium leprae Br4923] gi|13092951|emb|CAC31259.1| conserved hypothetical protein [Mycobacterium leprae] gi|219932985|emb|CAR70973.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=212 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 132/211 (63%), Positives = 153/211 (73%), Gaps = 3/211 (1%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 M++RYS YRRG D I+ DVIDRILVG CAAVWLV GVSVAAAVAL DLGRGFH++A +P Sbjct 1 MMNRYSPYRRGSDTIASDVIDRILVGVCAAVWLVLIGVSVAAAVALEDLGRGFHKIASDP 60 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGG--RSIGSGHPAKR 118 HTTWVLY +IVVS L+I GA+PVLL ARR+A EP RP G RGG + + +G R Sbjct 61 HTTWVLYGIIVVSVLIIAGAVPVLLWARRVARVEPPIRPAGVPERGGVRQLVSAGRSTAR 120 Query 119 AVAESAPVQH-ADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHD 177 E + + EW AVDRIWLRGTV LT +G AL+AVAA+TYLMAVG D Sbjct 121 IEVERVCAEERVQSVAQPGEWFDAAVDRIWLRGTVGLTGTMGAALVAVAASTYLMAVGRD 180 Query 178 GPSWISYGLAGVVTAGMPVIEWLYARQLRRV 208 G SW+ Y LAG+VTA MPVIEW+Y RQLRRV Sbjct 181 GASWVGYVLAGIVTAVMPVIEWIYVRQLRRV 211 >gi|296166067|ref|ZP_06848514.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898588|gb|EFG78147.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=215 Score = 247 bits (631), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 145/212 (69%), Positives = 164/212 (78%), Gaps = 7/212 (3%) Query 1 MVSRYSAYRR--GPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAG 58 MVSRYSAYRR G D ISPDV+DRIL+GACAAVWLV GVSVAAAVAL DLGRGFH+ A Sbjct 1 MVSRYSAYRRVAGDDTISPDVVDRILIGACAAVWLVLLGVSVAAAVALADLGRGFHKAAS 60 Query 59 NPHTT-WVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAK 117 + H+T WVLYAVI+VSAL+I GAIP+LLRARRMA+ EP+ R A R + S PA Sbjct 61 SSHSTSWVLYAVIIVSALIIAGAIPMLLRARRMAQTEPSARGMTAPNRPPVRLMS--PAP 118 Query 118 RAVAESA--PVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVG 175 R AE A P A A E AEWS EAVDR+WLRGTV+L +A+G ALIAVA ATYLMAVG Sbjct 119 RTAAERARQPRVQAPAAETDAEWSGEAVDRVWLRGTVLLVTAMGAALIAVATATYLMAVG 178 Query 176 HDGPSWISYGLAGVVTAGMPVIEWLYARQLRR 207 HDGPSW +Y +A V+TAGMP IEWL+ RQLRR Sbjct 179 HDGPSWTAYVVAAVITAGMPAIEWLHVRQLRR 210 >gi|118618839|ref|YP_907171.1| transmembrane protein [Mycobacterium ulcerans Agy99] gi|118570949|gb|ABL05700.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99] Length=212 Score = 238 bits (606), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 130/209 (63%), Positives = 156/209 (75%), Gaps = 1/209 (0%) Query 1 MVSRYSAYRRGPD-VISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGN 59 M+ +YSAYRRGP+ V++P+V+DRIL+GACAAVWL GV VAA VAL DLGRG +++ + Sbjct 1 MLGKYSAYRRGPEGVVAPEVVDRILIGACAAVWLALVGVGVAAVVALADLGRGVKKISKD 60 Query 60 PHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRA 119 H++WVLYAVIVVSAL+IVGA+P+LLRARRMAE P GG+ + + + RA Sbjct 61 SHSSWVLYAVIVVSALIIVGAVPMLLRARRMAETGPLVTSVPLRRTGGQPLRTANATMRA 120 Query 120 VAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGP 179 SA HA+ EWSSEAVDR+WLRGTV L IGIALIAV AAT LMAVGHDG Sbjct 121 ADRSARRDHANGRSEGTEWSSEAVDRVWLRGTVALVGTIGIALIAVGAATNLMAVGHDGA 180 Query 180 SWISYGLAGVVTAGMPVIEWLYARQLRRV 208 SW++YGL G+VTAGMP IEW Y RQLRRV Sbjct 181 SWVAYGLGGIVTAGMPAIEWFYVRQLRRV 209 >gi|183983232|ref|YP_001851523.1| transmembrane protein [Mycobacterium marinum M] gi|183176558|gb|ACC41668.1| conserved transmembrane protein [Mycobacterium marinum M] Length=212 Score = 237 bits (605), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 129/209 (62%), Positives = 157/209 (76%), Gaps = 1/209 (0%) Query 1 MVSRYSAYRRGPD-VISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGN 59 M+ +YSAYRRGP+ V++P+V+DR+L+GACAAVWL GV VAA VAL DLGRG +++ + Sbjct 1 MLGKYSAYRRGPEGVVAPEVVDRVLIGACAAVWLALVGVGVAAVVALADLGRGVQKISKD 60 Query 60 PHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRA 119 H++WVLYAVIVVSAL+IVGA+P+LLRARRMAE P GG+ + + + RA Sbjct 61 SHSSWVLYAVIVVSALIIVGAVPMLLRARRMAETGPLVTSVPLRRTGGQPLRTANATMRA 120 Query 120 VAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGP 179 SA HA+ +WSSEAVDR+WLRGTV L IGIALIAV AAT LMAVGHDG Sbjct 121 ADRSARRDHANGRSEGTQWSSEAVDRVWLRGTVALVGTIGIALIAVGAATNLMAVGHDGA 180 Query 180 SWISYGLAGVVTAGMPVIEWLYARQLRRV 208 SW++YGLAG+VTAGMP IEW Y RQLRRV Sbjct 181 SWVAYGLAGIVTAGMPAIEWFYVRQLRRV 209 >gi|342859908|ref|ZP_08716561.1| hypothetical protein MCOL_13553 [Mycobacterium colombiense CECT 3035] gi|342133040|gb|EGT86260.1| hypothetical protein MCOL_13553 [Mycobacterium colombiense CECT 3035] Length=216 Score = 236 bits (601), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 143/218 (66%), Positives = 169/218 (78%), Gaps = 8/218 (3%) Query 1 MVSRYSAYRRG--PDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAG 58 MVSRYSAYRRG D I+P+VIDRIL+GACAA++LV GVSVAAAVAL DLGRGFH+ A Sbjct 1 MVSRYSAYRRGVGDDTIAPEVIDRILIGACAAIYLVLLGVSVAAAVALADLGRGFHKAAS 60 Query 59 NPHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPA----TRPTGASVRGGRSIGSGH 114 +PHTTWVLYAVI+VSAL+I GAIP+LLRARRM++AEPA T P+ R +G+G Sbjct 61 SPHTTWVLYAVIIVSALIIAGAIPILLRARRMSQAEPAAQAMTAPSRGPARPSVRLGTG- 119 Query 115 PAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAV 174 + + VQ A A AEWS EAVDR+WLRGTV+LT +G ALIAVAAATYLMA+ Sbjct 120 ALRPGTGRTTTVQSA-APGPGAEWSGEAVDRVWLRGTVILTGTMGAALIAVAAATYLMAI 178 Query 175 GHDGPSWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQ 212 GHDG SW+ YG AGV+TA MPV+EWL+ RQLR+VVA Q Sbjct 179 GHDGGSWVGYGFAGVITAAMPVVEWLHIRQLRQVVAEQ 216 >gi|240168258|ref|ZP_04746917.1| putative transmembrane protein [Mycobacterium kansasii ATCC 12478] Length=213 Score = 231 bits (588), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 143/213 (68%), Positives = 159/213 (75%), Gaps = 1/213 (0%) Query 1 MVSRYSAYRRGPD-VISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGN 59 M+ RYSAYRRGPD +++P V+DRIL+GACAAVWLV GVSVAAAVAL DLGRGFH++ + Sbjct 1 MLGRYSAYRRGPDGIVAPAVVDRILIGACAAVWLVLVGVSVAAAVALADLGRGFHKVPRD 60 Query 60 PHTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRA 119 HTTWVLY VI++SAL+I GAIPVLLRARRM+ AE A RPT G G A R Sbjct 61 SHTTWVLYTVIIISALIIAGAIPVLLRARRMSVAESAARPTPPRALGRPPAAPGKSAVRT 120 Query 120 VAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGP 179 V S A AFE AAE S EAVDRIWLRGTV LT AIG ALI A ATYLMAVGHDG Sbjct 121 VGGSTRRDQARAFEAAAERSGEAVDRIWLRGTVALTGAIGTALIGAALATYLMAVGHDGA 180 Query 180 SWISYGLAGVVTAGMPVIEWLYARQLRRVVAPQ 212 SW+SYG A V+TAGMP IEW + RQLRRVV Q Sbjct 181 SWVSYGAAAVITAGMPAIEWYHVRQLRRVVDAQ 213 >gi|333990345|ref|YP_004522959.1| transmembrane protein [Mycobacterium sp. JDM601] gi|333486313|gb|AEF35705.1| transmembrane protein [Mycobacterium sp. JDM601] Length=215 Score = 158 bits (399), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 104/209 (50%), Positives = 126/209 (61%), Gaps = 3/209 (1%) Query 1 MVSRYSAYRRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNP 60 MV R A R G SP+V DR+L+G CAA+WL G+SVAA VAL+DLGRGF + + Sbjct 3 MVGRNIADRFGHPGQSPEVTDRVLLGVCAAIWLALLGMSVAATVALVDLGRGFDQPTESS 62 Query 61 HTTWVLYAVIVVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAV 120 HT +LY VI VSALVI+ AIPVLLRAR+ A + + G R +R Sbjct 63 HTG-LLYIVIGVSALVILAAIPVLLRARQAGPARRSAGFAPPAAAGPRPRPGAPLPQRGF 121 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 AP + + A A + VDR+ LRG VL SA G AL VAAATYLMAVG D S Sbjct 122 --DAPGRRSAATRPALLPNQAQVDRVLLRGVTVLGSAFGGALTMVAAATYLMAVGKDTGS 179 Query 181 WISYGLAGVVTAGMPVIEWLYARQLRRVV 209 W+ YGLAG +T MPVI WLY R+L V+ Sbjct 180 WVCYGLAGAITLAMPVIPWLYLRRLGEVL 208 >gi|118472757|ref|YP_888541.1| hypothetical protein MSMEG_4264 [Mycobacterium smegmatis str. MC2 155] gi|118174044|gb|ABK74940.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=187 Score = 113 bits (283), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 80/194 (42%), Positives = 105/194 (55%), Gaps = 16/194 (8%) Query 18 DVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVVSALVI 77 + DRIL GACA WL G VAA VAL+DLGRG + + T W+LY VI +S LVI Sbjct 9 NTTDRILAGACAVAWLAALGAGVAALVALVDLGRGHTQAVESTETPWLLYTVIGISVLVI 68 Query 78 VGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHP-AKRAVAESAPVQHADAFEVAA 136 AIP+LLRAR A++ P R G P A R V +AP DA A Sbjct 69 AAAIPLLLRARAQADSRPPARSQGP---------RREPVAPRRVGYTAPTYRQDAVATA- 118 Query 137 EWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPSWISYGLAGVVTAGMPV 196 V+++WLR + +T A+G+A + TYL+A H +W +YGLAG+VT GM Sbjct 119 -----FVEKVWLRFVLSVTCALGVATAVIGLGTYLLATDHSTAAWCAYGLAGLVTLGMIA 173 Query 197 IEWLYARQLRRVVA 210 + + R+L R A Sbjct 174 LPIIAIRELDRSAA 187 >gi|120404532|ref|YP_954361.1| hypothetical protein Mvan_3561 [Mycobacterium vanbaalenii PYR-1] gi|119957350|gb|ABM14355.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=219 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 93/206 (46%), Positives = 120/206 (59%), Gaps = 10/206 (4%) Query 9 RRGPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYA 68 RRG DV + D DRIL+GA VWL G VAA VAL+DL RG E A + T WVLY Sbjct 11 RRGFDVAALDRTDRILLGAAVVVWLAALGAGVAATVALVDLSRGHVESAADSGTPWVLYT 70 Query 69 VIVVSALVIVGAIPVLLRARRMAEAE-PA--TRPTGASVRGGRSIGSGHP-----AKRAV 120 +I +SA VIV A+P+LLRARR AEA+ PA RP + + G P A R Sbjct 71 IIGISAAVIVAAVPLLLRARRTAEADAPAAPQRPVTETAPPPPARGIDAPTEKLRAARPS 130 Query 121 AESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPS 180 S P+ A +A S D+++LR T + SA+G+A + V+ +TYLMAV D + Sbjct 131 EGSGPLPR--ALRSSAAPVSAVTDQVFLRCTASIASAMGVATLLVSVSTYLMAVDSDTAA 188 Query 181 WISYGLAGVVTAGMPVIEWLYARQLR 206 W+ YG+ GVVT GM I W + R+LR Sbjct 189 WVLYGVVGVVTVGMVAIPWYFLRELR 214 >gi|315443885|ref|YP_004076764.1| hypothetical protein Mspyr1_22840 [Mycobacterium sp. Spyr1] gi|315262188|gb|ADT98929.1| hypothetical protein Mspyr1_22840 [Mycobacterium sp. Spyr1] Length=227 Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/220 (42%), Positives = 116/220 (53%), Gaps = 35/220 (15%) Query 11 GPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVI 70 G D + D DR+L+G CA VWL G +VAA VAL+DL RG + + T WVLY VI Sbjct 14 GFDAAALDRTDRLLLGGCAVVWLAALGAAVAAVVALIDLSRGHATSSADSGTPWVLYTVI 73 Query 71 VVSALVIVGAIPVLLRARRMAEAE------------------PATRPTGASVRGGR---- 108 VSA VIV ++P+LLRARR + E PA RP A R Sbjct 74 GVSAAVIVASVPLLLRARRAPDDELTPVEQRLARQAAERTQTPA-RPVDAPTEKLRVPPP 132 Query 109 --SIGSGHPAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVA 166 SG + + +P A S AVDR+WLR T + +A+G A + V+ Sbjct 133 PVDTNSGRLPRILQSPVSP----------AVIDSPAVDRLWLRNTAAVAAAMGTATLLVS 182 Query 167 AATYLMAVGHDGPSWISYGLAGVVTAGMPVIEWLYARQLR 206 AATYLMAV + SW+ YG+AGVVT GM I W + R+LR Sbjct 183 AATYLMAVDSETASWVLYGVAGVVTVGMVAIPWYFLRELR 222 >gi|145223539|ref|YP_001134217.1| hypothetical protein Mflv_2952 [Mycobacterium gilvum PYR-GCK] gi|145216025|gb|ABP45429.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=227 Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 90/220 (41%), Positives = 116/220 (53%), Gaps = 35/220 (15%) Query 11 GPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVI 70 G D + D DR+L+G CA +WL G +VAA VAL+DL RG + + T WVLY VI Sbjct 14 GFDAAALDRTDRLLLGGCAVIWLAALGAAVAAVVALIDLSRGHATSSADSGTPWVLYTVI 73 Query 71 VVSALVIVGAIPVLLRARRMAEAE------------------PATRPTGASVRGGR---- 108 VSA VIV ++P+LLRARR + E PA RP A R Sbjct 74 GVSAAVIVASVPLLLRARRAPDDELTPVEQRLARQAAERTQTPA-RPVDAPTEKLRVPPP 132 Query 109 --SIGSGHPAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVA 166 SG + + +P A S AVDR+WLR T + +A+G A + V+ Sbjct 133 PVDTNSGRLPRILQSPVSP----------AVIDSPAVDRLWLRNTAAVAAAMGTATLLVS 182 Query 167 AATYLMAVGHDGPSWISYGLAGVVTAGMPVIEWLYARQLR 206 AATYLMAV + SW+ YG+AGVVT GM I W + R+LR Sbjct 183 AATYLMAVDSETASWVLYGVAGVVTVGMVAIPWYFLRELR 222 >gi|108800261|ref|YP_640458.1| hypothetical protein Mmcs_3295 [Mycobacterium sp. MCS] gi|119869389|ref|YP_939341.1| hypothetical protein Mkms_3357 [Mycobacterium sp. KMS] gi|126435884|ref|YP_001071575.1| hypothetical protein Mjls_3306 [Mycobacterium sp. JLS] gi|108770680|gb|ABG09402.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119695478|gb|ABL92551.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126235684|gb|ABN99084.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=215 Score = 107 bits (268), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 91/202 (46%), Positives = 121/202 (60%), Gaps = 9/202 (4%) Query 11 GPDVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVI 70 GPD + D +DRIL+GA AVWL G VAA VAL DL AG+ T W+LY VI Sbjct 17 GPDSL--DNVDRILLGAGGAVWLTALGTGVAATVALADLAGAAAPAAGDGDTPWLLYGVI 74 Query 71 VVSALVIVGAIPVLLRARRMAEAEPATRPTGASVRGGRSIGSGHPAKRAVAESAPVQHAD 130 +SA VI A+P+LLRARR A+ EPA +V+ GR+ G G A A + + A Sbjct 75 GISAAVIAAAVPLLLRARRNAQDEPAP----LTVQRGRTPGEGSAADTAEPPTEKLSVAA 130 Query 131 AFEVAAEW---SSEAVDRIWLRGTVVLTSAIGIALIAVAAATYLMAVGHDGPSWISYGLA 187 V + + V+++WLR +V+ A+G A+IA+ ATYLMAVG+D SW+ YGLA Sbjct 131 VTPVPSRLDAGDNARVEQLWLRCALVIAIAMGAAMIAIGVATYLMAVGNDLASWVLYGLA 190 Query 188 GVVTAGMPVIEWLYARQLRRVV 209 V+T MPV W Y R+LR ++ Sbjct 191 AVITLAMPVAPWWYLRELRALL 212 >gi|169629051|ref|YP_001702700.1| hypothetical protein MAB_1964 [Mycobacterium abscessus ATCC 19977] gi|169241018|emb|CAM62046.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=240 Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/219 (36%), Positives = 114/219 (53%), Gaps = 30/219 (13%) Query 16 SPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVVSAL 75 SP+ +DR+L+G CA +WL F G+ V A V + E +G+ ++W +Y VI VS Sbjct 21 SPESVDRMLIGLCAVIWLAFVGMLVGAIVVIAG----MGEDSGSSGSSWGIYIVIGVSLA 76 Query 76 VIVGAIPVLLRARRMAE-------AEPATRPTGASVRGGRSIGSGHPAKRAVAE------ 122 VIVGA+P+LLRAR+ A ++ A +P GA+ GG + SG P A E Sbjct 77 VIVGAVPLLLRARKSAAQRTARGASKTAPKPKGANSSGGATAPSGPPPTEASTEKLKTFG 136 Query 123 -------------SAPVQHADAFEVAAEWSSEAVDRIWLRGTVVLTSAIGIALIAVAAAT 169 + P A A ++R+WLR TV + AIG+AL+AV T Sbjct 137 GLADHVSHVPKDYNGPGSPAYRAATEAAAKRAVINRLWLRATVGIAGAIGLALLAVVTGT 196 Query 170 YLMAVGHDGPSWISYGLAGVVTAGMPVIEWLYARQLRRV 208 YL+AV D + I++ AGV+T M I W+ ++LR + Sbjct 197 YLLAVESDTAAVIAFVFAGVITCAMGAIPWVTLKKLREL 235 >gi|303253513|ref|ZP_07339652.1| arginine transporter permease subunit ArtM [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307248384|ref|ZP_07530407.1| Arginine ABC transporter permease protein artM [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307261838|ref|ZP_07543502.1| Arginine ABC transporter permease protein artM [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|302647623|gb|EFL77840.1| arginine transporter permease subunit ArtM [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306855122|gb|EFM87302.1| Arginine ABC transporter permease protein artM [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306868455|gb|EFN00268.1| Arginine ABC transporter permease protein artM [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length=227 Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust. Identities = 25/88 (29%), Positives = 43/88 (49%), Gaps = 3/88 (3%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + L+D+ ++ G + +Y + Sbjct 137 KILIPYALRRALPSYSNEIILVFKGTSLASTITLLDIMGYARQLYGTEYDAITIYGIAGA 196 Query 73 SALVIVGAIPVLLR---ARRMAEAEPAT 97 LVI G + +LLR A+ +A PAT Sbjct 197 IYLVITGIMTILLRRVEAKVLAFERPAT 224 >gi|254514493|ref|ZP_05126554.1| hypothetical protein NOR53_1894 [gamma proteobacterium NOR5-3] gi|219676736|gb|EED33101.1| hypothetical protein NOR53_1894 [gamma proteobacterium NOR5-3] Length=415 Score = 35.8 bits (81), Expect = 4.2, Method: Compositional matrix adjust. Identities = 21/71 (30%), Positives = 34/71 (48%), Gaps = 7/71 (9%) Query 35 FTGVSVAAAVALMDL-------GRGFHEMAGNPHTTWVLYAVIVVSALVIVGAIPVLLRA 87 +G SV ++ +D+ R FH ++ NP W A+ +A+ I + V+L A Sbjct 8 LSGNSVDVTISYIDVMIYNIAHHRTFHMISNNPPNGWASNAIAFATAVGITAVVTVMLHA 67 Query 88 RRMAEAEPATR 98 R A+ P TR Sbjct 68 RVAAQETPTTR 78 >gi|52424277|ref|YP_087414.1| arginine transporter permease subunit ArtM [Mannheimia succiniciproducens MBEL55E] gi|52306329|gb|AAU36829.1| ArtM protein [Mannheimia succiniciproducens MBEL55E] Length=227 Score = 35.8 bits (81), Expect = 4.7, Method: Compositional matrix adjust. Identities = 21/74 (29%), Positives = 37/74 (50%), Gaps = 0/74 (0%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + +MD+ ++ G + +Y + V Sbjct 137 KILIPYALKRALPSYSNEIILVFKGTSLASTITIMDIMGYARQLYGTEYDAITIYGIAGV 196 Query 73 SALVIVGAIPVLLR 86 LVI G + +LLR Sbjct 197 IYLVITGLMTLLLR 210 >gi|167855355|ref|ZP_02478122.1| ArtM protein [Haemophilus parasuis 29755] gi|167853503|gb|EDS24750.1| ArtM protein [Haemophilus parasuis 29755] Length=227 Score = 35.4 bits (80), Expect = 6.0, Method: Compositional matrix adjust. Identities = 21/74 (29%), Positives = 37/74 (50%), Gaps = 0/74 (0%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + +MD+ ++ G + +Y + V Sbjct 137 KILVPYALKRALPSYSNEIILVFKGTSLASTITIMDIMGYARQLYGTEYDALTIYGLAGV 196 Query 73 SALVIVGAIPVLLR 86 LVI G + V+LR Sbjct 197 VYLVITGIMTVILR 210 >gi|322513521|ref|ZP_08066622.1| arginine ABC superfamily ATP binding cassette transporter, membrane protein [Actinobacillus ureae ATCC 25976] gi|322120674|gb|EFX92565.1| arginine ABC superfamily ATP binding cassette transporter, membrane protein [Actinobacillus ureae ATCC 25976] Length=227 Score = 35.0 bits (79), Expect = 6.7, Method: Compositional matrix adjust. Identities = 24/88 (28%), Positives = 42/88 (48%), Gaps = 3/88 (3%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + L+D+ ++ G + +Y + Sbjct 137 KILIPYALRRALPSYSNEIILVFKGTSLASTITLLDIMGYARQLYGTKYDAITIYGIAGA 196 Query 73 SALVIVGAIPVLLR---ARRMAEAEPAT 97 LVI G + +LLR A+ + PAT Sbjct 197 IYLVITGIMTILLRRVEAKVLVFERPAT 224 >gi|303250563|ref|ZP_07336760.1| arginine transporter permease subunit ArtM [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252992|ref|ZP_07534879.1| Arginine ABC transporter permease protein artM [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650551|gb|EFL80710.1| arginine transporter permease subunit ArtM [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306859521|gb|EFM91547.1| Arginine ABC transporter permease protein artM [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length=227 Score = 35.0 bits (79), Expect = 7.8, Method: Compositional matrix adjust. Identities = 24/87 (28%), Positives = 42/87 (49%), Gaps = 3/87 (3%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + L+D+ ++ G + +Y + Sbjct 137 KILIPYALRRALPSYSNEIILVFKGTSLASTITLLDIMGYARQLYGTEYDAITIYGIAGA 196 Query 73 SALVIVGAIPVLLR---ARRMAEAEPA 96 LVI G + +LLR A+ +A PA Sbjct 197 IYLVITGIMTILLRRVEAKVLAFERPA 223 >gi|53728960|ref|ZP_00348280.1| COG4160: ABC-type arginine/histidine transport system, permease component [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126208815|ref|YP_001054040.1| arginine transporter permease subunit ArtM [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|190150672|ref|YP_001969197.1| arginine transporter permease ArtM [Actinobacillus pleuropneumoniae serovar 7 str. AP76] 8 more sequence titles Length=227 Score = 35.0 bits (79), Expect = 8.2, Method: Compositional matrix adjust. Identities = 24/87 (28%), Positives = 42/87 (49%), Gaps = 3/87 (3%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + L+D+ ++ G + +Y + Sbjct 137 KILIPYALRRALPSYSNEIILVFKGTSLASTITLLDIMGYARQLYGTEYDAITIYGIAGA 196 Query 73 SALVIVGAIPVLLR---ARRMAEAEPA 96 LVI G + +LLR A+ +A PA Sbjct 197 IYLVITGIMTILLRRVEAKVLAFERPA 223 >gi|345002250|ref|YP_004805104.1| glycoside hydrolase family protein [Streptomyces sp. SirexAA-E] gi|344317876|gb|AEN12564.1| glycoside hydrolase family 16 [Streptomyces sp. SirexAA-E] Length=626 Score = 34.7 bits (78), Expect = 9.1, Method: Compositional matrix adjust. Identities = 25/90 (28%), Positives = 38/90 (43%), Gaps = 15/90 (16%) Query 111 GSGHPAKRAVAESAPVQHADAFEVAAEWSSEAVDRIWLR---GTVVLTSAIGIALIAVAA 167 GS +PA S P D + WSS+ D W+R G+ + + + + A Sbjct 61 GSENPA------SGPGAATDG-DATTRWSSDFADNAWIRVDLGSTIRINQVKLEWEAAYG 113 Query 168 ATYLMAVGHDGPSWISY-----GLAGVVTA 192 Y++ V DG +W + G G VTA Sbjct 114 KKYVLEVSKDGTNWTPFYTEDAGTGGTVTA 143 >gi|342864557|ref|ZP_08721136.1| amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein [Avibacterium paragallinarum AVPAR72] gi|341922313|gb|EGT71862.1| amino ABC transporter, permease , 3-TM region, His/Glu/Gln/Arg/opine family domain protein [Avibacterium paragallinarum AVPAR72] Length=225 Score = 34.7 bits (78), Expect = 9.3, Method: Compositional matrix adjust. Identities = 20/74 (28%), Positives = 36/74 (49%), Gaps = 0/74 (0%) Query 13 DVISPDVIDRILVGACAAVWLVFTGVSVAAAVALMDLGRGFHEMAGNPHTTWVLYAVIVV 72 ++ P + R L + LVF G S+A+ + L+D+ ++ G + +Y + + Sbjct 137 KILIPYALKRALPSYSNEIILVFKGTSLASTITLLDIMGYARQLYGTEYDALTIYGIAGI 196 Query 73 SALVIVGAIPVLLR 86 LVI G +LLR Sbjct 197 IYLVITGITTLLLR 210 >gi|188591210|ref|YP_001795810.1| glycosyl hydrolase, bnr repeat [Cupriavidus taiwanensis LMG 19424] gi|170938104|emb|CAP63088.1| putative Glycosyl hydrolase, BNR repeat [Cupriavidus taiwanensis LMG 19424] Length=321 Score = 34.7 bits (78), Expect = 10.0, Method: Compositional matrix adjust. Identities = 22/48 (46%), Positives = 29/48 (61%), Gaps = 2/48 (4%) Query 148 LRGTVVLTSAIGIALIAVAAATY--LMAVGHDGPSWISYGLAGVVTAG 193 LRGTV+++S G + AVA+AT L V DG W++ G GVV G Sbjct 229 LRGTVLVSSDAGTSWRAVASATQEDLFDVAWDGSQWVAVGDKGVVLLG 276 Lambda K H 0.322 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 254328062080 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40