BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2198c
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609335|ref|NP_216714.1| membrane protein [Mycobacterium tub... 579 2e-163
gi|294993583|ref|ZP_06799274.1| hypothetical protein Mtub2_03509... 574 4e-162
gi|308370942|ref|ZP_07423296.2| membrane protein mmpS3 [Mycobact... 516 2e-144
gi|308375809|ref|ZP_07445176.2| membrane protein mmpS3 [Mycobact... 436 2e-120
gi|289762360|ref|ZP_06521738.1| membrane protein mmpS3 [Mycobact... 423 1e-116
gi|118618840|ref|YP_907172.1| membrane protein MmpS3 [Mycobacter... 352 5e-95
gi|183983233|ref|YP_001851524.1| membrane protein MmpS3 [Mycobac... 349 3e-94
gi|15827400|ref|NP_301663.1| hypothetical protein ML0877 [Mycoba... 335 5e-90
gi|240168259|ref|ZP_04746918.1| membrane protein MmpS3 [Mycobact... 322 6e-86
gi|336461922|gb|EGO40775.1| Mycobacterium membrane protein [Myco... 291 7e-77
gi|342859909|ref|ZP_08716562.1| membrane protein MmpS3 [Mycobact... 286 4e-75
gi|108800262|ref|YP_640459.1| hypothetical protein Mmcs_3296 [My... 258 6e-67
gi|296166068|ref|ZP_06848515.1| conserved hypothetical protein [... 187 2e-45
gi|254822830|ref|ZP_05227831.1| membrane protein MmpS3 [Mycobact... 183 4e-44
gi|120404533|ref|YP_954362.1| putative membrane protein MmpS3 [M... 157 1e-36
gi|145223538|ref|YP_001134216.1| hypothetical protein Mflv_2951 ... 156 4e-36
gi|315443884|ref|YP_004076763.1| hypothetical protein Mspyr1_228... 156 4e-36
gi|118472224|ref|YP_888542.1| MmpS3 protein [Mycobacterium smegm... 150 2e-34
gi|254774966|ref|ZP_05216482.1| membrane protein MmpS3 [Mycobact... 146 3e-33
gi|333990344|ref|YP_004522958.1| hypothetical protein JDM601_170... 145 7e-33
gi|41408036|ref|NP_960872.1| MmpS3 [Mycobacterium avium subsp. p... 133 4e-29
gi|254774965|ref|ZP_05216481.1| MmpS3 protein [Mycobacterium avi... 130 3e-28
gi|169629050|ref|YP_001702699.1| MmpS family protein [Mycobacter... 130 3e-28
gi|296166070|ref|ZP_06848516.1| possible membrane protein MmpS3 ... 122 5e-26
gi|254822892|ref|ZP_05227893.1| MmpS3 protein [Mycobacterium int... 116 4e-24
gi|108798366|ref|YP_638563.1| hypothetical protein Mmcs_1395 [My... 86.3 6e-15
gi|126434050|ref|YP_001069741.1| hypothetical protein Mjls_1449 ... 83.6 4e-14
gi|118470889|ref|YP_886299.1| MmpS3 protein [Mycobacterium smegm... 77.8 2e-12
gi|120402792|ref|YP_952621.1| hypothetical protein Mvan_1793 [My... 73.9 3e-11
gi|315445549|ref|YP_004078428.1| hypothetical protein Mspyr1_400... 73.9 3e-11
gi|145225252|ref|YP_001135930.1| hypothetical protein Mflv_4674 ... 73.6 4e-11
gi|296169015|ref|ZP_06850680.1| MmpS3 protein [Mycobacterium par... 69.3 6e-10
gi|339633217|ref|YP_004724859.1| hypothetical protein MAF_32180 ... 67.4 2e-09
gi|15842796|ref|NP_337833.1| hypothetical protein MT3305 [Mycoba... 67.4 3e-09
gi|289444782|ref|ZP_06434526.1| threonine and proline rich prote... 67.4 3e-09
gi|15610345|ref|NP_217725.1| hypothetical protein Rv3209 [Mycoba... 67.4 3e-09
gi|167968327|ref|ZP_02550604.1| conserved threonine and proline ... 65.5 1e-08
gi|289575926|ref|ZP_06456153.1| conserved hypothetical threonine... 64.7 2e-08
gi|183981371|ref|YP_001849662.1| putative threonine and proline ... 64.7 2e-08
gi|169630610|ref|YP_001704259.1| hypothetical protein MAB_3529 [... 64.7 2e-08
gi|15827356|ref|NP_301619.1| hypothetical protein ML0813 [Mycoba... 63.5 4e-08
gi|118618013|ref|YP_906345.1| putative threonine and proline ric... 62.0 1e-07
gi|240172124|ref|ZP_04750783.1| putative threonine and proline r... 60.5 3e-07
gi|118464384|ref|YP_883305.1| hypothetical protein MAV_4157 [Myc... 58.2 2e-06
gi|336459522|gb|EGO38459.1| Mycobacterium membrane protein [Myco... 58.2 2e-06
gi|41409408|ref|NP_962244.1| hypothetical protein MAP3310 [Mycob... 58.2 2e-06
gi|342861167|ref|ZP_08717816.1| hypothetical protein MCOL_19887 ... 57.8 2e-06
gi|120405050|ref|YP_954879.1| hypothetical protein Mvan_4096 [My... 52.4 8e-05
gi|240171590|ref|ZP_04750249.1| proline rich membrane protein [M... 48.5 0.001
gi|254823123|ref|ZP_05228124.1| hypothetical protein MintA_24555... 45.1 0.012
>gi|15609335|ref|NP_216714.1| membrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841689|ref|NP_336726.1| hypothetical protein MT2254 [Mycobacterium tuberculosis CDC1551]
gi|31793377|ref|NP_855870.1| membrane protein [Mycobacterium bovis AF2122/97]
65 more sequence titles
Length=299
Score = 579 bits (1493), Expect = 2e-163, Method: Compositional matrix adjust.
Identities = 299/299 (100%), Positives = 299/299 (100%), Gaps = 0/299 (0%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP 60
MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP
Sbjct 1 MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP 60
Query 61 ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL 120
ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL
Sbjct 61 ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL 120
Query 121 VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPP 180
VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPP
Sbjct 121 VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPP 180
Query 181 PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR 240
PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR
Sbjct 181 PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR 240
Query 241 TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC
Sbjct 241 TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
>gi|294993583|ref|ZP_06799274.1| hypothetical protein Mtub2_03509 [Mycobacterium tuberculosis
210]
Length=299
Score = 574 bits (1480), Expect = 4e-162, Method: Compositional matrix adjust.
Identities = 297/299 (99%), Positives = 297/299 (99%), Gaps = 0/299 (0%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP 60
MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP
Sbjct 1 MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP 60
Query 61 ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL 120
ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL
Sbjct 61 ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL 120
Query 121 VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPP 180
VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPP PPAPP TTEIPTATETQTVTVTPPP
Sbjct 121 VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPAPPAPPATTEIPTATETQTVTVTPPP 180
Query 181 PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR 240
PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR
Sbjct 181 PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR 240
Query 241 TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC
Sbjct 241 TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
>gi|308370942|ref|ZP_07423296.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu003]
gi|308374522|ref|ZP_07436359.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu006]
gi|308379144|ref|ZP_07485223.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu010]
gi|308330196|gb|EFP19047.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu003]
gi|308341601|gb|EFP30452.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu006]
gi|308357969|gb|EFP46820.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu010]
gi|339295112|gb|AEJ47223.1| membrane protein mmpS3 [Mycobacterium tuberculosis CCDC5079]
gi|339298733|gb|AEJ50843.1| membrane protein mmpS3 [Mycobacterium tuberculosis CCDC5180]
Length=268
Score = 516 bits (1328), Expect = 2e-144, Method: Compositional matrix adjust.
Identities = 267/268 (99%), Positives = 268/268 (100%), Gaps = 0/268 (0%)
Query 32 LPPVAGGGDKLPSDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDD 91
+PPVAGGGDKLPSDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDD
Sbjct 1 MPPVAGGGDKLPSDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDD 60
Query 92 ELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPA 151
ELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPA
Sbjct 61 ELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPA 120
Query 152 PPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGP 211
PPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGP
Sbjct 121 PPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGP 180
Query 212 RQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFR 271
RQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFR
Sbjct 181 RQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFR 240
Query 272 VSKLNCSITTSDGTVLSSNSNDGPQTSC 299
VSKLNCSITTSDGTVLSSNSNDGPQTSC
Sbjct 241 VSKLNCSITTSDGTVLSSNSNDGPQTSC 268
>gi|308375809|ref|ZP_07445176.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu007]
gi|308380295|ref|ZP_07489439.2| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu011]
gi|308345008|gb|EFP33859.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu007]
gi|308361903|gb|EFP50754.1| membrane protein mmpS3 [Mycobacterium tuberculosis SUMu011]
Length=229
Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 228/229 (99%), Positives = 229/229 (100%), Gaps = 0/229 (0%)
Query 71 VPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLA 130
+PADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLA
Sbjct 1 MPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLA 60
Query 131 TGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAP 190
TGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAP
Sbjct 61 TGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAP 120
Query 191 PPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWS 250
PPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWS
Sbjct 121 PPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWS 180
Query 251 MTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
MTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC
Sbjct 181 MTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 229
>gi|289762360|ref|ZP_06521738.1| membrane protein mmpS3 [Mycobacterium tuberculosis GM 1503]
gi|289709866|gb|EFD73882.1| membrane protein mmpS3 [Mycobacterium tuberculosis GM 1503]
Length=296
Score = 423 bits (1088), Expect = 1e-116, Method: Compositional matrix adjust.
Identities = 296/299 (99%), Positives = 296/299 (99%), Gaps = 3/299 (1%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP 60
MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP
Sbjct 1 MSGPNPPGREPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQTGETDAYSRAYSAP 60
Query 61 ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL 120
ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL
Sbjct 61 ESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLL 120
Query 121 VTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPP 180
VTRPHTSKLATGDTTSSAPPVQDEITTTKPA PPPAPPPTTEIPTATETQTVTVTPPP
Sbjct 121 VTRPHTSKLATGDTTSSAPPVQDEITTTKPA---PPPAPPPTTEIPTATETQTVTVTPPP 177
Query 181 PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR 240
PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR
Sbjct 178 PPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRR 237
Query 241 TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC
Sbjct 238 TQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 296
>gi|118618840|ref|YP_907172.1| membrane protein MmpS3 [Mycobacterium ulcerans Agy99]
gi|118570950|gb|ABL05701.1| conserved membrane protein MmpS3 [Mycobacterium ulcerans Agy99]
Length=315
Score = 352 bits (902), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 225/315 (72%), Positives = 241/315 (77%), Gaps = 16/315 (5%)
Query 1 MSGPNPPGREPDEP--------ESEPVSDTGDE---RASGNHLPPVAGGGDKLPSDQTGE 49
MSGPNPPG EPDEP E EP DTGDE +G L PV+ G P D E
Sbjct 1 MSGPNPPGWEPDEPDPAGDSSAELEPFGDTGDEPDDALAGGELEPVSESGQIEPVDPAQE 60
Query 50 TDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIA 109
++AYSRAYSAPESE G Y+PADL LYDYD Y++S D +DE + PRWPWVVGVAAI+A
Sbjct 61 SEAYSRAYSAPESEQFISGAYLPADLSLYDYDGYDDSLDEEDEPSTPRWPWVVGVAAIMA 120
Query 110 AVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTAT 169
A+ALV SVSLLVTR ++KLA TTSS PPVQDEITTTKP PPPPPP PPP+TEIPTAT
Sbjct 121 AIALVASVSLLVTRTDSTKLANPATTSSVPPVQDEITTTKPPPPPPPPPPPPSTEIPTAT 180
Query 170 ETQ-----TVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAP 224
ETQ PPPP A TT AAAPPPTTTTP GPRQVTYSVTGTKAP
Sbjct 181 ETQTVTVTPPPPPPPPPETSAAPPPAATTPTTPAAAPPPTTTTPAGPRQVTYSVTGTKAP 240
Query 225 GDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDG 284
GDIISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS+LNCSITTSDG
Sbjct 241 GDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSRLNCSITTSDG 300
Query 285 TVLSSNSNDGPQTSC 299
TVLSSNSND PQTSC
Sbjct 301 TVLSSNSNDAPQTSC 315
>gi|183983233|ref|YP_001851524.1| membrane protein MmpS3 [Mycobacterium marinum M]
gi|183176559|gb|ACC41669.1| conserved membrane protein MmpS3 [Mycobacterium marinum M]
Length=315
Score = 349 bits (896), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 224/315 (72%), Positives = 240/315 (77%), Gaps = 16/315 (5%)
Query 1 MSGPNPPGREPDEP--------ESEPVSDTGDE---RASGNHLPPVAGGGDKLPSDQTGE 49
MSGPNPPG EPDEP E EP DT DE +G L PV+ G P D E
Sbjct 1 MSGPNPPGWEPDEPDPAGDSSAELEPFGDTDDEPDDALAGGELEPVSESGQIEPVDPAQE 60
Query 50 TDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIA 109
++AYSRAYSAPESE G Y+PADL LYDYD Y++S D +DE + PRWPWVVGVAAI+A
Sbjct 61 SEAYSRAYSAPESEQFISGAYLPADLSLYDYDGYDDSLDEEDEPSTPRWPWVVGVAAIMA 120
Query 110 AVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTAT 169
A+ALV SVSLLVTR ++KLA TTSS PPVQDEITTTKP PPPPPP PPP+TEIPTAT
Sbjct 121 AIALVASVSLLVTRTDSTKLANPATTSSVPPVQDEITTTKPPPPPPPPPPPPSTEIPTAT 180
Query 170 ETQ-----TVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAP 224
ETQ PPPP A TT AAAPPPTTTTP GPRQVTYSVTGTKAP
Sbjct 181 ETQTVTVTPPPPPPPPPETSAAPPPAATTPTTPAAAPPPTTTTPAGPRQVTYSVTGTKAP 240
Query 225 GDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDG 284
GDIISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS+LNCSITTSDG
Sbjct 241 GDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSRLNCSITTSDG 300
Query 285 TVLSSNSNDGPQTSC 299
TVLSSNSND PQTSC
Sbjct 301 TVLSSNSNDAPQTSC 315
>gi|15827400|ref|NP_301663.1| hypothetical protein ML0877 [Mycobacterium leprae TN]
gi|221229877|ref|YP_002503293.1| hypothetical protein MLBr_00877 [Mycobacterium leprae Br4923]
gi|13092950|emb|CAC31258.1| putative membrane protein [Mycobacterium leprae]
gi|219932984|emb|CAR70972.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=293
Score = 335 bits (859), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 213/311 (69%), Positives = 231/311 (75%), Gaps = 30/311 (9%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDERA----------SGNHLPPVAGGGDKLPSDQTGET 50
MSGPNPPGRE +E SD+G+E + S + L PV SD T ET
Sbjct 1 MSGPNPPGRENEE------SDSGNELSGELDPHNGVESVDELVPVPDSDLVTASDHTSET 54
Query 51 DAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIAA 110
+ YS+AYSAPE+EH T PYVPADLRLYDYD ESS D+ AAPRWPWVVGVAAI+AA
Sbjct 55 EVYSQAYSAPEAEHFTAVPYVPADLRLYDYD---ESSVYDEPGAAPRWPWVVGVAAILAA 111
Query 111 VALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATE 170
++LVVSVSLL TR TSKL+T T S PPVQDEITT KP PPP+TE TATE
Sbjct 112 ISLVVSVSLLFTRTDTSKLSTPTTGRSTPPVQDEITTVKP--------PPPSTETSTATE 163
Query 171 TQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTP--TGPRQVTYSVTGTKAPGDII 228
TQTVTVTP PPP AT+TA PP++ PTTT TGPRQVTYSVTGTKAPGDII
Sbjct 164 TQTVTVTPLPPPS-ATSTAVPPSSVVPPPPTTPTTTVTTLTGPRQVTYSVTGTKAPGDII 222
Query 229 SVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLS 288
SVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEA SLFRVSKLNC ITTSDGTVLS
Sbjct 223 SVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEAFSLFRVSKLNCLITTSDGTVLS 282
Query 289 SNSNDGPQTSC 299
SNSND PQTSC
Sbjct 283 SNSNDAPQTSC 293
>gi|240168259|ref|ZP_04746918.1| membrane protein MmpS3 [Mycobacterium kansasii ATCC 12478]
Length=311
Score = 322 bits (824), Expect = 6e-86, Method: Compositional matrix adjust.
Identities = 238/311 (77%), Positives = 260/311 (84%), Gaps = 12/311 (3%)
Query 1 MSGPNPPGREPDEPES--------EPVSDTGDERASGNH---LPPVAGGGDKLPSDQTGE 49
MSGPNPPGREP+EP+S E +SDTGDE A+G L P+ G + TGE
Sbjct 1 MSGPNPPGREPEEPDSAGDSSAELEALSDTGDELAAGAEGGALQPLDDSGHFDAAYPTGE 60
Query 50 TDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAIIA 109
++AYSRAYSAPESE GPY+PADL LYDYD+Y+++SD DDE APRWPWVVGVAAI+A
Sbjct 61 SEAYSRAYSAPESEQFISGPYLPADLSLYDYDNYDDASDADDEHGAPRWPWVVGVAAILA 120
Query 110 AVALVVSVSLLVTRPHTSKLAT-GDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTA 168
A+ALVVSVSLLVTR + +LA T+SSAPP+QDEITTT+P PPPPPP PPPTTEIPTA
Sbjct 121 AIALVVSVSLLVTRTGSQRLANPATTSSSAPPIQDEITTTQPPPPPPPPPPPPTTEIPTA 180
Query 169 TETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDII 228
TETQTVTVTPPPPPP TT APPPATTT AA PP TTTT GPRQVTYSVTGTKAPGDII
Sbjct 181 TETQTVTVTPPPPPPAPTTAAPPPATTTAAAPPPTTTTTLAGPRQVTYSVTGTKAPGDII 240
Query 229 SVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLS 288
SVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLS
Sbjct 241 SVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLS 300
Query 289 SNSNDGPQTSC 299
SN+ND PQTSC
Sbjct 301 SNNNDAPQTSC 311
>gi|336461922|gb|EGO40775.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=320
Score = 291 bits (745), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 224/322 (70%), Positives = 244/322 (76%), Gaps = 25/322 (7%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDER-----------------ASGNHLPPVAGGGDKLP 43
MSG PPG EP+EP+ P +D D + A G+H V D +
Sbjct 1 MSGSRPPGWEPEEPD--PAADPIDHQPDPGGPPADEFPGEDFPAGGDHEDAVEPFDDSVE 58
Query 44 ---SDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPW 100
+DQTG+TDAYSRAYSAPESEH T GPYVPADLRLYDYDDY+E ++LD+E RWPW
Sbjct 59 FDAADQTGQTDAYSRAYSAPESEHFTSGPYVPADLRLYDYDDYDEPAELDEEHGTARWPW 118
Query 101 VVGVAAIIAAVALVVSVSLLVTRPHTSKLAT-GDTTSSAPPVQDEITTTKPAPPPPPPAP 159
VVGVAAI+AA+ALVVSVSLL R T+KLA TT+S PP+QDEITTTKP PPPPPP P
Sbjct 119 VVGVAAIVAAIALVVSVSLLFARTDTTKLANPNTTTASTPPLQDEITTTKPPPPPPPPPP 178
Query 160 PPTTEIPTATET--QTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYS 217
PPTTE P T T QTVTVTP P PPP AP P T+ AA PP TTPTGPRQVTYS
Sbjct 179 PPTTEPPPPTATETQTVTVTPSPAPPPPPAPAPAPPPATSTAAAPPPPTTPTGPRQVTYS 238
Query 218 VTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNC 277
VTGTKAPGDIISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS+LNC
Sbjct 239 VTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSRLNC 298
Query 278 SITTSDGTVLSSNSNDGPQTSC 299
SITTSDGTVLSSNSND PQTSC
Sbjct 299 SITTSDGTVLSSNSNDAPQTSC 320
>gi|342859909|ref|ZP_08716562.1| membrane protein MmpS3 [Mycobacterium colombiense CECT 3035]
gi|342133041|gb|EGT86261.1| membrane protein MmpS3 [Mycobacterium colombiense CECT 3035]
Length=311
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 216/314 (69%), Positives = 234/314 (75%), Gaps = 18/314 (5%)
Query 1 MSGPNPPG-------------REPDEPESEPVSDTGDERASGNHLPPVAGGGDKLPSDQT 47
MSG PPG EPD P EP D G A + P +L ++QT
Sbjct 1 MSGSRPPGWDPDEPDPADPISHEPD-PGDEP-DDLG-RGADADAEPEPFEDSAELAANQT 57
Query 48 GETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAI 107
ETDAYSRAYSAPESEH T GPY+PADL LYDYDD++ES+D DDE + RWPWVVGVAAI
Sbjct 58 DETDAYSRAYSAPESEHFTSGPYLPADLGLYDYDDFDESADADDERSTARWPWVVGVAAI 117
Query 108 IAAVALVVSVSLLVTRPHTSKLATGDTTS--SAPPVQDEITTTKPAPPPPPPAPPPTTEI 165
+AA+ALVVSVSLL R T+KLA TT+ S PP+QDEITTTKP PPPPPP
Sbjct 118 VAAIALVVSVSLLFARTDTTKLANPGTTTAPSTPPLQDEITTTKPPPPPPPPPTTEPPPP 177
Query 166 PTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPG 225
PTATETQTVTVTP P PPP AP P T+ AA PP +TP GPRQVTYSVTGTKAPG
Sbjct 178 PTATETQTVTVTPSPAPPPPPAPAPAPPPATSTAAAPPPPSTPAGPRQVTYSVTGTKAPG 237
Query 226 DIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGT 285
DIISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS+LNCSITTSDGT
Sbjct 238 DIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSRLNCSITTSDGT 297
Query 286 VLSSNSNDGPQTSC 299
VLSSNSND PQTSC
Sbjct 298 VLSSNSNDSPQTSC 311
>gi|108800262|ref|YP_640459.1| hypothetical protein Mmcs_3296 [Mycobacterium sp. MCS]
gi|119869390|ref|YP_939342.1| hypothetical protein Mkms_3358 [Mycobacterium sp. KMS]
gi|126435885|ref|YP_001071576.1| hypothetical protein Mjls_3307 [Mycobacterium sp. JLS]
gi|108770681|gb|ABG09403.1| putative conserved membrane protein MmpS3 [Mycobacterium sp.
MCS]
gi|119695479|gb|ABL92552.1| putative conserved membrane protein MmpS3 [Mycobacterium sp.
KMS]
gi|126235685|gb|ABN99085.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=297
Score = 258 bits (660), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 188/281 (67%), Positives = 209/281 (75%), Gaps = 7/281 (2%)
Query 25 ERASGNHLPPVAG----GGDKLPSDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDY 80
ER G H P G + P+ TG T+AYS+AYSAPESE + GPYVPAD LYDY
Sbjct 18 EREGGRHSAPDEATEQVGAAEQPAAATGATEAYSQAYSAPESEQFSSGPYVPADPALYDY 77
Query 81 DDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSSAPP 140
D YE SD+ +E A PRWPWVVGV AIIAA++LVVSV+LLVT+ T +LAT TT++ PP
Sbjct 78 DSYEPVSDVGEEQAPPRWPWVVGVTAIIAAISLVVSVALLVTKTDTDQLATPATTTTTPP 137
Query 141 --VQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTA 198
VQDEITTT P PPPPPP P ET TVT PPPPP PPP TTT
Sbjct 138 PPVQDEITTTTPPPPPPPPPTTEPPP-PPPPETVTVTEPPPPPPSAEAPPPPPPETTTPP 196
Query 199 AAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQ 258
PPPTTTTP GPRQVTYSVTGTKAPGDII+VTYVDA+GRRRTQ NVYIPWS+TVTPISQ
Sbjct 197 PPPPPTTTTPAGPRQVTYSVTGTKAPGDIITVTYVDASGRRRTQRNVYIPWSLTVTPISQ 256
Query 259 SDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
S+VGSV+ASSLF VSKLNCSITTSDGTVLSSN+ + QTSC
Sbjct 257 SEVGSVQASSLFLVSKLNCSITTSDGTVLSSNTGNAAQTSC 297
>gi|296166068|ref|ZP_06848515.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898589|gb|EFG78148.1| conserved hypothetical protein [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=96
Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/95 (96%), Positives = 94/95 (99%), Gaps = 0/95 (0%)
Query 205 TTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSV 264
TTTPTGPRQVTYSVTGTKAPGDIISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSV
Sbjct 2 TTTPTGPRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSV 61
Query 265 EASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
EASSLFRVS+LNCSITTSDGTVLSSN+ND PQTSC
Sbjct 62 EASSLFRVSRLNCSITTSDGTVLSSNTNDAPQTSC 96
>gi|254822830|ref|ZP_05227831.1| membrane protein MmpS3 [Mycobacterium intracellulare ATCC 13950]
Length=92
Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/92 (96%), Positives = 90/92 (98%), Gaps = 0/92 (0%)
Query 208 PTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEAS 267
P GPRQVTYSVTGTKAPGDIISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEAS
Sbjct 1 PAGPRQVTYSVTGTKAPGDIISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEAS 60
Query 268 SLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
SLFRVS+LNCSITTSDGTVLSSNSND PQTSC
Sbjct 61 SLFRVSRLNCSITTSDGTVLSSNSNDSPQTSC 92
>gi|120404533|ref|YP_954362.1| putative membrane protein MmpS3 [Mycobacterium vanbaalenii PYR-1]
gi|119957351|gb|ABM14356.1| putative conserved membrane protein MmpS3 [Mycobacterium vanbaalenii
PYR-1]
Length=274
Score = 157 bits (398), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 75/90 (84%), Positives = 85/90 (95%), Gaps = 0/90 (0%)
Query 210 GPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSL 269
GPRQVTYSVTGTKAPGDII+VTY+DA+GR RTQ NVYIPWS+TVTPISQS+VGSV+ASSL
Sbjct 185 GPRQVTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWSLTVTPISQSEVGSVQASSL 244
Query 270 FRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
F VS+LNCSITTSDGTVLSSN+++ QTSC
Sbjct 245 FMVSRLNCSITTSDGTVLSSNTSNAAQTSC 274
>gi|145223538|ref|YP_001134216.1| hypothetical protein Mflv_2951 [Mycobacterium gilvum PYR-GCK]
gi|145216024|gb|ABP45428.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=268
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/93 (83%), Positives = 85/93 (92%), Gaps = 0/93 (0%)
Query 207 TPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEA 266
TP GPRQVTYSVTGTKAPGDII+VTY+DA+GR RTQ NVYIPWS+TVTPISQS+VGSV+A
Sbjct 176 TPAGPRQVTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWSLTVTPISQSEVGSVQA 235
Query 267 SSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
SSLF VSKLNCSITTSDG VLSSN+ + QTSC
Sbjct 236 SSLFLVSKLNCSITTSDGQVLSSNTGNAAQTSC 268
>gi|315443884|ref|YP_004076763.1| hypothetical protein Mspyr1_22830 [Mycobacterium sp. Spyr1]
gi|315262187|gb|ADT98928.1| hypothetical protein Mspyr1_22830 [Mycobacterium sp. Spyr1]
Length=268
Score = 156 bits (394), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 77/93 (83%), Positives = 85/93 (92%), Gaps = 0/93 (0%)
Query 207 TPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEA 266
TP GPRQVTYSVTGTKAPGDII+VTY+DA+GR RTQ NVYIPWS+TVTPISQS+VGSV+A
Sbjct 176 TPAGPRQVTYSVTGTKAPGDIITVTYIDASGRSRTQRNVYIPWSLTVTPISQSEVGSVQA 235
Query 267 SSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
SSLF VSKLNCSITTSDG VLSSN+ + QTSC
Sbjct 236 SSLFLVSKLNCSITTSDGQVLSSNTGNAAQTSC 268
>gi|118472224|ref|YP_888542.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
gi|118173511|gb|ABK74407.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
Length=297
Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/90 (79%), Positives = 79/90 (88%), Gaps = 0/90 (0%)
Query 210 GPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSL 269
GPRQVTYSVTGTKAPGDII++TYVD G RRT NVYIPW+ T+TPIS SDVGSVEASSL
Sbjct 208 GPRQVTYSVTGTKAPGDIITITYVDGNGNRRTLRNVYIPWTFTMTPISNSDVGSVEASSL 267
Query 270 FRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
F VS+LNCSIT SDGTVLSSN+N+ QT+C
Sbjct 268 FLVSRLNCSITASDGTVLSSNANNSAQTAC 297
>gi|254774966|ref|ZP_05216482.1| membrane protein MmpS3 [Mycobacterium avium subsp. avium ATCC
25291]
Length=72
Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 69/72 (96%), Positives = 71/72 (99%), Gaps = 0/72 (0%)
Query 228 ISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVL 287
ISVTYVDA+GRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVS+LNCSITTSDGTVL
Sbjct 1 ISVTYVDASGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSRLNCSITTSDGTVL 60
Query 288 SSNSNDGPQTSC 299
SSNSND PQTSC
Sbjct 61 SSNSNDAPQTSC 72
>gi|333990344|ref|YP_004522958.1| hypothetical protein JDM601_1704 [Mycobacterium sp. JDM601]
gi|333486312|gb|AEF35704.1| membrane protein MmpS3 [Mycobacterium sp. JDM601]
Length=298
Score = 145 bits (366), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/89 (77%), Positives = 78/89 (88%), Gaps = 0/89 (0%)
Query 211 PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF 270
P QVTYSVTGTKAP D I++TYVDA+G+RRTQ N YIPWS T+TPISQS++GSVEASS+
Sbjct 210 PMQVTYSVTGTKAPFDQITITYVDASGQRRTQRNAYIPWSFTLTPISQSEIGSVEASSML 269
Query 271 RVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
R+SKLNCSIT+SDG VLSSNSND P T C
Sbjct 270 RLSKLNCSITSSDGRVLSSNSNDAPATRC 298
>gi|41408036|ref|NP_960872.1| MmpS3 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118463396|ref|YP_881497.1| MmpS3 protein [Mycobacterium avium 104]
gi|41396391|gb|AAS04255.1| MmpS3 [Mycobacterium avium subsp. paratuberculosis K-10]
gi|118164683|gb|ABK65580.1| MmpS3 protein [Mycobacterium avium 104]
Length=266
Score = 133 bits (334), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/166 (57%), Positives = 111/166 (67%), Gaps = 23/166 (13%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDER-----------------ASGNHLPPVAGGGDKLP 43
MSG PPG EP+EP +P +D D + A G+H V D +
Sbjct 1 MSGSRPPGWEPEEP--DPAADPIDHQPDPGGPPADEFPGEDFPAGGDHEDAVEPFDDSVE 58
Query 44 ---SDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPW 100
+DQTG+TDAYSRAYSAPESEH T GPYVPADLRLYDYDDY+E ++LD+E RWPW
Sbjct 59 FDAADQTGQTDAYSRAYSAPESEHFTSGPYVPADLRLYDYDDYDEPAELDEEHGTARWPW 118
Query 101 VVGVAAIIAAVALVVSVSLLVTRPHTSKLAT-GDTTSSAPPVQDEI 145
VVGVAAI+AA+ALVVSVSLL R T+KLA TT+S PP+QDEI
Sbjct 119 VVGVAAIVAAIALVVSVSLLFARTDTTKLANPNTTTASTPPLQDEI 164
>gi|254774965|ref|ZP_05216481.1| MmpS3 protein [Mycobacterium avium subsp. avium ATCC 25291]
Length=210
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 94/166 (57%), Positives = 110/166 (67%), Gaps = 23/166 (13%)
Query 1 MSGPNPPGREPDEPESEPVSDTGDER-----------------ASGNHLPPVAGGGDKLP 43
MSG PPG EP+EP +P +D D + A G H V D +
Sbjct 1 MSGSRPPGWEPEEP--DPAADPIDHQPDPGGPPADEFPGEDFPAGGEHEDAVEPFDDSVE 58
Query 44 ---SDQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPW 100
+DQTG+TDAYSRAYSAPESEH T GPYVPADLRLYDYDDY+E ++LD+E RWPW
Sbjct 59 FDAADQTGQTDAYSRAYSAPESEHFTSGPYVPADLRLYDYDDYDEPAELDEEHGTARWPW 118
Query 101 VVGVAAIIAAVALVVSVSLLVTRPHTSKLAT-GDTTSSAPPVQDEI 145
VVGVAAI+AA+ALVVSVSLL R T+KLA TT+S PP+QDEI
Sbjct 119 VVGVAAIVAAIALVVSVSLLFARTDTTKLANPNTTTASTPPLQDEI 164
>gi|169629050|ref|YP_001702699.1| MmpS family protein [Mycobacterium abscessus ATCC 19977]
gi|169241017|emb|CAM62045.1| Putative membrane protein, MmpS family [Mycobacterium abscessus]
Length=288
Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/93 (67%), Positives = 76/93 (82%), Gaps = 0/93 (0%)
Query 207 TPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEA 266
TP GPRQ+TYSVTG+KAP D IS+T+ D +GR R NVYIPWS+TVTPIS S++GSV A
Sbjct 196 TPAGPRQITYSVTGSKAPLDRISITWTDGSGRTRVNPNVYIPWSITVTPISNSEIGSVSA 255
Query 267 SSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
SS R+S+LNC+ITTSDG VLSSN+N+ Q +C
Sbjct 256 SSFLRLSQLNCTITTSDGQVLSSNNNNSAQATC 288
>gi|296166070|ref|ZP_06848516.1| possible membrane protein MmpS3 [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898565|gb|EFG78125.1| possible membrane protein MmpS3 [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=204
Score = 122 bits (307), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 79/120 (66%), Positives = 95/120 (80%), Gaps = 5/120 (4%)
Query 29 GNHLPPVAGGGDKLPS-DQTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESS 87
G+ L P GD P+ DQTG+TDAYSRAYSAPESEH GPY+PADLRLYDYD ++E++
Sbjct 42 GDELEPF--DGDAEPAADQTGQTDAYSRAYSAPESEHFISGPYLPADLRLYDYDAFDEAA 99
Query 88 DLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTS--SAPPVQDEI 145
D +DE APRWPWVVG+AAI+AA+ALVVSVSLL R T+KLA +TT+ S PP+QDEI
Sbjct 100 DAEDEHGAPRWPWVVGIAAIVAAIALVVSVSLLFARTDTTKLANPNTTTVPSTPPMQDEI 159
>gi|254822892|ref|ZP_05227893.1| MmpS3 protein [Mycobacterium intracellulare ATCC 13950]
Length=201
Score = 116 bits (290), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 111/194 (58%), Positives = 129/194 (67%), Gaps = 22/194 (11%)
Query 1 MSGPNPPGREPDEPE-SEPVSDT--------------GDERASGNHLPPVAGGGDKLPSD 45
MSG PPG EPDE + +P+S GD G P + +D
Sbjct 1 MSGSKPPGWEPDESDPVDPISHHADAGDDPADDGEPGGDHDVEGA-AEPFDDSAELAAAD 59
Query 46 QTGETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVA 105
QT DAYSRAYSAPESEH T GPY+PADLRLYDY+DY+ES+D +DE + RWPWVVG+A
Sbjct 60 QT---DAYSRAYSAPESEHFTSGPYLPADLRLYDYEDYDESAD-EDERSTARWPWVVGIA 115
Query 106 AIIAAVALVVSVSLLVTRPHTSKLATGDTTS--SAPPVQDEITTTKPAPPPPPPAPPPTT 163
AI+AA+ALVVSVSLL R T+KLA +TT+ S PP+QDEITTTKP PPPPPP
Sbjct 116 AIVAAIALVVSVSLLFARTDTTKLANPNTTTAPSTPPMQDEITTTKPPPPPPPPPTTEPP 175
Query 164 EIPTATETQTVTVT 177
PTATETQTVTVT
Sbjct 176 PPPTATETQTVTVT 189
>gi|108798366|ref|YP_638563.1| hypothetical protein Mmcs_1395 [Mycobacterium sp. MCS]
gi|119867463|ref|YP_937415.1| hypothetical protein Mkms_1413 [Mycobacterium sp. KMS]
gi|108768785|gb|ABG07507.1| hypothetical protein Mmcs_1395 [Mycobacterium sp. MCS]
gi|119693552|gb|ABL90625.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length=282
Score = 86.3 bits (212), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 88/252 (35%), Positives = 126/252 (50%), Gaps = 25/252 (9%)
Query 55 RAYSAPESEH---VTGGPYVPADLRLYDYDDYEESSDLDDELAA--PRWPWVVGVAAIIA 109
R Y+ +S++ G Y AD+ D++DYE D D AA RW W+ GVA +
Sbjct 47 RHYADGQSDYGQSWASGRYAAADVEDPDFEDYE---DYDAYAAAIDSRWKWIAGVAGAVL 103
Query 110 AVALVVSVSLLVTRPHTSKLAT-GDTTSSAPPVQDEITTTKPAPPPPPPA-PPPTTEIPT 167
VA++ ++ +L S AT G + S PP T AP A PPPT +
Sbjct 104 LVAVICTLVILGGGDSGSVSATVGTSAQSRPPA------TATAPHDTSAALPPPTASL-- 155
Query 168 ATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDI 227
A ET T TVTP PP P+ + P PA + A PP T +TY+VTG + D
Sbjct 156 APETIT-TVTPTAPPSPSASATPDPAPSAVAPPPPAAATPRA----ITYTVTGNRQLIDF 210
Query 228 ISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVL 287
++V Y D G +T+ NV +PWS TV ++ SV A+S+ +LNC+IT + G L
Sbjct 211 VTVIYTDQQGALQTEVNVSLPWSKTVVLDPGVELKSVTATSVG--GQLNCAITDAAGAAL 268
Query 288 SSNSNDGPQTSC 299
+ +N+ +C
Sbjct 269 VTQNNNSMIATC 280
>gi|126434050|ref|YP_001069741.1| hypothetical protein Mjls_1449 [Mycobacterium sp. JLS]
gi|126233850|gb|ABN97250.1| conserved hypothetical protein [Mycobacterium sp. JLS]
Length=282
Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 84/237 (36%), Positives = 118/237 (50%), Gaps = 24/237 (10%)
Query 68 GPYVPADLRLYDYDDYEESSDLDDELAA---PRWPWVVGVAAIIAAVALVVSVSLLVTRP 124
G Y D+ DY+DYE+ D AA RW W+ GVA + VA++ ++ +L
Sbjct 63 GRYAATDVEDPDYEDYEDY----DAYAATIDSRWKWIAGVAGAVLLVAVICTLVILGGGD 118
Query 125 HTSKLAT-GDTTSSAPPVQDEITTTKPAPPPPPPA-PPPTTEIPTATETQTVTVTPPPPP 182
S AT G + S PP T AP A PPPT + A ET T TVTP PP
Sbjct 119 SGSVSATVGTSAQSRPPA------TATAPHDTSAALPPPTASL--APETIT-TVTPTAPP 169
Query 183 PPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQ 242
P+ + P PA + A PP T +TY+VTG + D ++V Y D G +T+
Sbjct 170 SPSASATPDPAPSAVAPPPPAAATPRA----ITYTVTGNRQLIDFVTVIYTDQQGALQTE 225
Query 243 HNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
NV +PWS TV ++ SV A+S+ +LNC+IT + G L + +N+ +C
Sbjct 226 VNVSLPWSKTVVLDPGVELKSVTATSVG--GQLNCAITDAAGAALVTQNNNSMIATC 280
>gi|118470889|ref|YP_886299.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
gi|118172176|gb|ABK73072.1| MmpS3 protein [Mycobacterium smegmatis str. MC2 155]
Length=274
Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 74/251 (30%), Positives = 108/251 (44%), Gaps = 57/251 (22%)
Query 79 DYDDYEESS---------------DLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTR 123
DYDDY + + +E RW WV GVA I VA++ +V +L
Sbjct 49 DYDDYVRADGGNGGFDDGYDDPDIEFYEEPLDRRWIWVAGVAGAILLVAVICTVVIL--- 105
Query 124 PHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPP 183
GD+ S + V D T++PA P Q + TP P PP
Sbjct 106 ------GGGDSGSVSATVADPTQTSQPATTAP----------------QDASSTPRPLPP 143
Query 184 PATTTAPPPATTTTAAAPPPTTTTPT---------------GPRQVTYSVTGTKAPGDII 228
A + +P TT T + P T PR VTY+VTG + D++
Sbjct 144 VAPSLSPETVTTVTPSPTAPAATAEPAPVAPPAEAAPPPAVNPRAVTYTVTGNRQLIDLV 203
Query 229 SVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLS 288
++ Y D G +T NV +PW+ TV ++ SV A+S+ +LNCSIT + G VL
Sbjct 204 TIVYTDERGALQTDINVALPWTKTVVLDPGVELKSVTATSV--AGQLNCSITDAAGNVLV 261
Query 289 SNSNDGPQTSC 299
+ +N+ +C
Sbjct 262 NQANNTMIATC 272
>gi|120402792|ref|YP_952621.1| hypothetical protein Mvan_1793 [Mycobacterium vanbaalenii PYR-1]
gi|119955610|gb|ABM12615.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1]
Length=260
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/222 (30%), Positives = 106/222 (48%), Gaps = 15/222 (6%)
Query 78 YDYDDYEESSDLDDELAAPRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSS 137
YD +DY+ +D+E RW W+ GVA I VA V++ S++ L GD+ S
Sbjct 52 YDAEDYDGY--IDEERLDRRWMWIAGVAGAILFVA-VITASMI--------LGGGDSGSV 100
Query 138 APPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTT 197
+ V + ++ P PAP + +TVT P P P
Sbjct 101 SATVASPLPSSSAPEPSAAPAPRVAAPAVPSLPAETVTTVTPTAEIPTPAPTTPAPLLPA 160
Query 198 AAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPIS 257
A PP + G VTY +TG +A D+++V Y DA G +T N +PWS T+
Sbjct 161 PQAAPPPASAAPGT--VTYRITGNRALLDLVTVIYTDAQGALQTDVNAALPWSKTIVLNP 218
Query 258 QSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
+ SV A+S+ +LNC+I ++G+++++ +N+ T+C
Sbjct 219 GVTLSSVTATSM--SGQLNCAILDANGSLIAAQNNNSIITNC 258
>gi|315445549|ref|YP_004078428.1| hypothetical protein Mspyr1_40060 [Mycobacterium sp. Spyr1]
gi|315263852|gb|ADU00594.1| hypothetical protein Mspyr1_40060 [Mycobacterium sp. Spyr1]
Length=282
Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 69/236 (30%), Positives = 105/236 (45%), Gaps = 37/236 (15%)
Query 78 YDYDDYEESSDLDDELAAPR----WPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGD 133
YD DDY + + D+ L R W W+ GVA I VA V++VS++ L GD
Sbjct 68 YDSDDYTDVENYDEYLDEARIDRRWMWIAGVAGAILFVA-VITVSMI--------LGGGD 118
Query 134 TTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPA 193
+ S ++ T AP P AP E A + P P TT P A
Sbjct 119 SGS--------VSATVAAPLPTSSAP----EPSAAPSPRAAAPASPSLPAETVTTVTPTA 166
Query 194 TTTTAAAPPPTTTTPTGPRQ----------VTYSVTGTKAPGDIISVTYVDAAGRRRTQH 243
T A P+ P VTY +TG +A D++++ Y D G +T
Sbjct 167 ETPAPAPVAPSPLLPAPQAAPPPAAAAPGTVTYRITGNRALLDLVTIIYTDEQGALKTDV 226
Query 244 NVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
N +PW+ TV + SV A+S+ +LNC+I ++G++++ +N+ T+C
Sbjct 227 NAALPWTKTVVLNPGVTLSSVTATSVS--GQLNCAILDANGSLIAVQNNNSIITNC 280
>gi|145225252|ref|YP_001135930.1| hypothetical protein Mflv_4674 [Mycobacterium gilvum PYR-GCK]
gi|145217738|gb|ABP47142.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK]
Length=282
Score = 73.6 bits (179), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 69/236 (30%), Positives = 105/236 (45%), Gaps = 37/236 (15%)
Query 78 YDYDDYEESSDLDDELAAPR----WPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGD 133
YD DDY + + D+ L R W W+ GVA I VA V++VS++ L GD
Sbjct 68 YDSDDYTDVENYDEYLDEARIDRRWMWIAGVAGAILFVA-VITVSMI--------LGGGD 118
Query 134 TTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPA 193
+ S ++ T AP P AP E A + P P TT P A
Sbjct 119 SGS--------VSATVAAPLPTSSAP----EPSAAPSPRAAAPASPSLPAETVTTVTPTA 166
Query 194 TTTTAAAPPPTTTTPTGPRQ----------VTYSVTGTKAPGDIISVTYVDAAGRRRTQH 243
T A P+ P VTY +TG +A D++++ Y D G +T
Sbjct 167 ETPAPAPVAPSPLLPAPQAAPPPAAAAPGTVTYRITGNRALLDLVTIIYTDEQGALKTDV 226
Query 244 NVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
N +PW+ TV + SV A+S+ +LNC+I ++G++++ +N+ T+C
Sbjct 227 NAALPWTKTVVLNPGVTLSSVTATSVS--GQLNCAILDANGSLIAVQNNNSIITNC 280
>gi|296169015|ref|ZP_06850680.1| MmpS3 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295896312|gb|EFG75969.1| MmpS3 protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=239
Score = 69.3 bits (168), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 80/253 (32%), Positives = 110/253 (44%), Gaps = 35/253 (13%)
Query 49 ETDAYSRAYSAPESEHVTGGPYVPADLRLYDYDDYEESSDLDDELAAPRWPWVVGVAAII 108
ETD RA S PE ++ G PA+LR V AI+
Sbjct 18 ETDELYRAGSYPEGDYNWTG--WPAELRWRP------------------------VTAIV 51
Query 109 AAVALVVSVSLLVTRPHTSKLATGDTTSSAP-PVQDEITTTKP-APPPPPPAPPPTTEIP 166
AV V +++ V +T T AP PV TTK APP P+P T ++P
Sbjct 52 GAVVAVGAIATAVIINSGDSASTKATIGPAPQPVTSAPATTKASAPPSAQPSPSVTQQLP 111
Query 167 TATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGD 226
ET T TP P A T P A T PR V YSVTG+K D
Sbjct 112 P--ETVTTVTTPSAAPSLAPTGTPTAAPPLTLTP---PPAAALNPRTVVYSVTGSKQLLD 166
Query 227 IISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTV 286
++++ Y D GR +T+ NV +PW+ V SV A+S + +LNCSI + G +
Sbjct 167 LVNIVYTDGQGRSQTEFNVSLPWTKAVILNPGIQNPSVVATSFY--GRLNCSIVNAAGQL 224
Query 287 LSSNSNDGPQTSC 299
+++ +N+ SC
Sbjct 225 VAAQANNASLASC 237
>gi|339633217|ref|YP_004724859.1| hypothetical protein MAF_32180 [Mycobacterium africanum GM041182]
gi|339332573|emb|CCC28288.1| conserved hypothetical threonin and proline rich protein [Mycobacterium
africanum GM041182]
Length=186
Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 51/134 (39%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query 175 TVTPPPPPPPATTTAPP------PATTTTAAAPPPTTT---TPTGPRQVTYSVTGTKAPG 225
T+ P PP TT APP T T AAPP T P PR V Y VTGTK
Sbjct 53 TLRPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPQAPLNPRTVVYRVTGTKQLF 112
Query 226 DIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGT 285
D+++V Y DA G T NV +PW+ V SV A+SL+ S+LNCSI +
Sbjct 113 DLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY--SRLNCSIVNTGAQ 170
Query 286 VLSSNSNDGPQTSC 299
+ +++N+ +C
Sbjct 171 TVVASTNNAIIATC 184
>gi|15842796|ref|NP_337833.1| hypothetical protein MT3305 [Mycobacterium tuberculosis CDC1551]
gi|254233821|ref|ZP_04927146.1| conserved hypothetical threonine and proline rich protein [Mycobacterium
tuberculosis C]
gi|13883123|gb|AAK47647.1| hypothetical protein MT3305 [Mycobacterium tuberculosis CDC1551]
gi|124599350|gb|EAY58454.1| conserved hypothetical threonine and proline rich protein [Mycobacterium
tuberculosis C]
Length=187
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/134 (39%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query 175 TVTPPPPPPPATTTAPP------PATTTTAAAPPPTTT---TPTGPRQVTYSVTGTKAPG 225
T+ P PP TT APP T T AAPP T P PR V Y VTGTK
Sbjct 54 TLRPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLF 113
Query 226 DIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGT 285
D+++V Y DA G T NV +PW+ V SV A+SL+ S+LNCSI +
Sbjct 114 DLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY--SRLNCSIVNTGAQ 171
Query 286 VLSSNSNDGPQTSC 299
+ +++N+ +C
Sbjct 172 TVVASTNNAIIATC 185
>gi|289444782|ref|ZP_06434526.1| threonine and proline rich protein [Mycobacterium tuberculosis
T46]
gi|308232379|ref|ZP_07415871.2| conserved proline and threonine rich protein [Mycobacterium tuberculosis
SUMu001]
gi|308370191|ref|ZP_07666886.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis
SUMu002]
20 more sequence titles
Length=133
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/131 (39%), Positives = 65/131 (50%), Gaps = 11/131 (8%)
Query 178 PPPPPPPATTTAPP------PATTTTAAAPPPTTT---TPTGPRQVTYSVTGTKAPGDII 228
P PP TT APP T T AAPP T P PR V Y VTGTK D++
Sbjct 3 PQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLFDLV 62
Query 229 SVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLS 288
+V Y DA G T NV +PW+ V SV A+SL+ S+LNCSI + +
Sbjct 63 NVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY--SRLNCSIVNTGAQTVV 120
Query 289 SNSNDGPQTSC 299
+++N+ +C
Sbjct 121 ASTNNAIIATC 131
>gi|15610345|ref|NP_217725.1| hypothetical protein Rv3209 [Mycobacterium tuberculosis H37Rv]
gi|31794387|ref|NP_856880.1| hypothetical protein Mb3235 [Mycobacterium bovis AF2122/97]
gi|121639096|ref|YP_979320.1| threonin and proline rich protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
37 more sequence titles
Length=186
Score = 67.4 bits (163), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/134 (39%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query 175 TVTPPPPPPPATTTAPP------PATTTTAAAPPPTTT---TPTGPRQVTYSVTGTKAPG 225
T+ P PP TT APP T T AAPP T P PR V Y VTGTK
Sbjct 53 TLRPQLPPETVTTVAPPGTGPTTVPTRTPTAAPPQTAVPPPAPLNPRTVVYRVTGTKQLF 112
Query 226 DIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGT 285
D+++V Y DA G T NV +PW+ V SV A+SL+ S+LNCSI +
Sbjct 113 DLVNVVYTDARGFPVTDFNVSLPWTKMVVLNPGVQTESVVATSLY--SRLNCSIVNTGAQ 170
Query 286 VLSSNSNDGPQTSC 299
+ +++N+ +C
Sbjct 171 TVVASTNNAIIATC 184
>gi|167968327|ref|ZP_02550604.1| conserved threonine and proline rich protein [Mycobacterium tuberculosis
H37Ra]
gi|289448894|ref|ZP_06438638.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis
CPHL_A]
gi|297732855|ref|ZP_06961973.1| hypothetical protein MtubKR_17277 [Mycobacterium tuberculosis
KZN R506]
gi|313660188|ref|ZP_07817068.1| hypothetical protein MtubKV_17282 [Mycobacterium tuberculosis
KZN V2475]
gi|289421852|gb|EFD19053.1| conserved proline and threonine rich protein [Mycobacterium tuberculosis
CPHL_A]
Length=121
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/111 (39%), Positives = 58/111 (53%), Gaps = 9/111 (8%)
Query 189 APPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIP 248
A PP T A PPP P PR V Y VTGTK D+++V Y DA G T NV +P
Sbjct 18 AAPPQT----AVPPP---APLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLP 70
Query 249 WSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
W+ V SV A+SL+ S+LNCSI + + +++N+ +C
Sbjct 71 WTKMVVLNPGVQTESVVATSLY--SRLNCSIVNTGAQTVVASTNNAIIATC 119
>gi|289575926|ref|ZP_06456153.1| conserved hypothetical threonine and proline rich protein [Mycobacterium
tuberculosis K85]
gi|289540357|gb|EFD44935.1| conserved hypothetical threonine and proline rich protein [Mycobacterium
tuberculosis K85]
Length=121
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/104 (39%), Positives = 55/104 (53%), Gaps = 5/104 (4%)
Query 199 AAPPPTTT---TPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTP 255
AAPP T P PR V Y VTGTK D+++V Y DA G T NV +PW+ V
Sbjct 18 AAPPQTAVPPQAPLNPRTVVYRVTGTKQLFDLVNVVYTDARGFPVTDFNVSLPWTKMVVL 77
Query 256 ISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
SV A+SL+ S+LNCSI + + +++N+ +C
Sbjct 78 NPGVQTESVVATSLY--SRLNCSIVNTGAQTVVASTNNAIIATC 119
>gi|183981371|ref|YP_001849662.1| putative threonine and proline rich protein [Mycobacterium marinum
M]
gi|183174697|gb|ACC39807.1| conserved hypothetical threonine and proline rich protein [Mycobacterium
marinum M]
Length=326
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/127 (36%), Positives = 65/127 (52%), Gaps = 7/127 (5%)
Query 175 TVTPPPPPP--PATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTY 232
TVTPP P P T AP P A PP + PR V Y VTGTK D++++ Y
Sbjct 203 TVTPPGAAPTWPPTAVAPLPGMQPLPAEPP---SAALNPRTVIYRVTGTKQLLDMVNIVY 259
Query 233 VDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSN 292
DA G T+ NV +PW+ V SV A+S++ +LNC+I + G ++ +++N
Sbjct 260 TDARGFPVTEFNVALPWTKMVVLNPGVQTESVVATSIY--GRLNCAIVNAQGQLVVASTN 317
Query 293 DGPQTSC 299
+C
Sbjct 318 TSIIATC 324
>gi|169630610|ref|YP_001704259.1| hypothetical protein MAB_3529 [Mycobacterium abscessus ATCC 19977]
gi|169242577|emb|CAM63605.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=244
Score = 64.7 bits (156), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/92 (37%), Positives = 51/92 (56%), Gaps = 2/92 (2%)
Query 208 PTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEAS 267
P P Y VTG + PGD++++TY D G RT +PW+M VTP GS+ A+
Sbjct 153 PITPAAFAYYVTGNQTPGDLLTITYTDGNGMTRTVLGASLPWTMIVTPSPGITGGSITAT 212
Query 268 SLFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
S S++NCSIT S+ +L+ +++ C
Sbjct 213 SF--ASQVNCSITNSENQMLAVQNSNSIIARC 242
>gi|15827356|ref|NP_301619.1| hypothetical protein ML0813 [Mycobacterium leprae TN]
gi|221229834|ref|YP_002503250.1| hypothetical protein MLBr_00813 [Mycobacterium leprae Br4923]
gi|13092905|emb|CAC30323.1| putative membrane protein [Mycobacterium leprae]
gi|219932941|emb|CAR70908.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=195
Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/128 (36%), Positives = 67/128 (53%), Gaps = 6/128 (4%)
Query 176 VTPPPPPPPATTTAPPPATTT--TAAAPPPTTTTP--TGPRQVTYSVTGTKAPGDIISVT 231
+T P P PAT ++ PP TA A P P PR V Y+VTG K D+++V
Sbjct 68 LTTPSIPLPATPSSTPPLLLLPDTATATIPHKAAPPALHPRTVVYNVTGMKELLDLVTVV 127
Query 232 YVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNS 291
Y DA G +T+ NV +PW+ V SV A+S S+L+CSI ++G + +++
Sbjct 128 YTDARGYPKTEFNVVLPWTKAVVLNLGVKTQSVVATSFH--SQLHCSIVNAEGQPVVAST 185
Query 292 NDGPQTSC 299
N+ +C
Sbjct 186 NNAVIATC 193
>gi|118618013|ref|YP_906345.1| putative threonine and proline rich protein [Mycobacterium ulcerans
Agy99]
gi|118570123|gb|ABL04874.1| conserved hypothetical threonine and proline rich protein [Mycobacterium
ulcerans Agy99]
Length=184
Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/127 (35%), Positives = 64/127 (51%), Gaps = 7/127 (5%)
Query 175 TVTPPPPPP--PATTTAPPPATTTTAAAPPPTTTTPTGPRQVTYSVTGTKAPGDIISVTY 232
TVTPP P P T AP A PP + PR V Y VTGTK D++++ Y
Sbjct 61 TVTPPGAAPTWPPTAVAPLQGMQPLPAEPP---SAALNPRTVIYRVTGTKQLLDMVNIVY 117
Query 233 VDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGTVLSSNSN 292
DA G T+ NV +PW+ V SV A+S++ +LNC+I + G ++ +++N
Sbjct 118 TDARGFPVTEFNVALPWTKMVVLNPGVQTESVVATSIY--GRLNCAIVNAQGQLVVASTN 175
Query 293 DGPQTSC 299
+C
Sbjct 176 TSIIATC 182
>gi|240172124|ref|ZP_04750783.1| putative threonine and proline rich protein [Mycobacterium kansasii
ATCC 12478]
Length=283
Score = 60.5 bits (145), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/112 (41%), Positives = 59/112 (53%), Gaps = 7/112 (6%)
Query 186 TTTAPPPATTTTAAAPPPTTTTP----TGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRT 241
T T P A T A PP TP PR V YSVTGTK DI++V Y D G T
Sbjct 166 TVTIPSAAPTRIPTAVPPQPGTPPSAALSPRAVVYSVTGTKQLLDIVNVVYTDERGFPVT 225
Query 242 QHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKLNCSITTSDGT-VLSSNSN 292
+ NV +PW+ V SV A+S++ S+LNC+I + G V++S +N
Sbjct 226 EFNVALPWTKMVVLNPGVQTESVVATSIY--SRLNCAIVNAQGQPVVASTTN 275
>gi|118464384|ref|YP_883305.1| hypothetical protein MAV_4157 [Mycobacterium avium 104]
gi|118165671|gb|ABK66568.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=245
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (36%), Positives = 50/89 (57%), Gaps = 2/89 (2%)
Query 211 PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF 270
PR V YSV+G+K D+++V Y DA G +T+ NV +PWS V SV A+S +
Sbjct 157 PRTVVYSVSGSKQLLDLVNVVYTDAHGVPQTEFNVSLPWSKVVVLEPGVQTESVVATSFY 216
Query 271 RVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
+L+CSI + G + +++N +C
Sbjct 217 --GRLSCSIFNAAGQRVVASANASNMATC 243
>gi|336459522|gb|EGO38459.1| Mycobacterium membrane protein [Mycobacterium avium subsp. paratuberculosis
S397]
Length=251
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/89 (36%), Positives = 50/89 (57%), Gaps = 2/89 (2%)
Query 211 PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF 270
PR V YSV+G+K D+++V Y DA G +T+ NV +PWS V SV A+S +
Sbjct 163 PRTVVYSVSGSKQLLDLVNVVYTDAHGVPQTEFNVSLPWSKVVVLEPGVQTESVVATSFY 222
Query 271 RVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
+L+CSI + G + +++N +C
Sbjct 223 --GRLSCSIFNAAGQRVVASANASNMATC 249
>gi|41409408|ref|NP_962244.1| hypothetical protein MAP3310 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41398239|gb|AAS05860.1| hypothetical protein MAP_3310 [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=191
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/91 (38%), Positives = 54/91 (60%), Gaps = 6/91 (6%)
Query 211 PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVT--PISQSDVGSVEASS 268
PR V YSV+G+K D+++V Y DA G +T+ NV +PWS V P Q++ SV A+S
Sbjct 103 PRTVVYSVSGSKQLLDLVNVVYTDAHGVPQTEFNVSLPWSKVVVLEPGVQTE--SVVATS 160
Query 269 LFRVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
+ +L+CSI + G + +++N +C
Sbjct 161 FY--GRLSCSIFNAAGQRVVASANASNMATC 189
>gi|342861167|ref|ZP_08717816.1| hypothetical protein MCOL_19887 [Mycobacterium colombiense CECT
3035]
gi|342131611|gb|EGT84881.1| hypothetical protein MCOL_19887 [Mycobacterium colombiense CECT
3035]
Length=248
Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/89 (38%), Positives = 49/89 (56%), Gaps = 2/89 (2%)
Query 211 PRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLF 270
PR V YSV GTK D+++V Y DA G +T+ NV +PWS V SV A+S +
Sbjct 160 PRTVLYSVNGTKQLLDLVNVVYTDARGVPQTEFNVSLPWSKVVVLNPGVQTESVVATSFY 219
Query 271 RVSKLNCSITTSDGTVLSSNSNDGPQTSC 299
+L+CSI + G + +++N +C
Sbjct 220 --GQLSCSIFNAAGQRVIASTNVSNMATC 246
>gi|120405050|ref|YP_954879.1| hypothetical protein Mvan_4096 [Mycobacterium vanbaalenii PYR-1]
gi|119957868|gb|ABM14873.1| putative conserved proline rich membrane protein [Mycobacterium
vanbaalenii PYR-1]
Length=288
Score = 52.4 bits (124), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 60/199 (31%), Positives = 85/199 (43%), Gaps = 34/199 (17%)
Query 97 RWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPP 156
RW W+V A++ + LV+++ ++ +S PV IT AP P
Sbjct 115 RWLWIVAGLAVLTVIGLVIALVIV-------------NSSRQQPV--AITPLPSAPEPSY 159
Query 157 PAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQ-VT 215
P P PTT T PP P+T P P + PPT T G V
Sbjct 160 PTPAPTT-------------TSRPPTRPSTPVLPAPTLPSAPRTTPPTEPTVPGATDAVV 206
Query 216 YSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKL 275
Y+V G G I++TYVD G +T+ NV +PWS V+ + GS S + ++
Sbjct 207 YTVDGN---GRAINITYVDTGGLLQTEFNVMLPWSKEVS-LPAPGEGSASISIINVGREV 262
Query 276 NCSITTSDGTVLSSNSNDG 294
CSIT +G L + G
Sbjct 263 TCSITV-NGVQLDERTGAG 280
>gi|240171590|ref|ZP_04750249.1| proline rich membrane protein [Mycobacterium kansasii ATCC 12478]
Length=263
Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/187 (27%), Positives = 79/187 (43%), Gaps = 36/187 (19%)
Query 96 PRWPWVVGVAAIIAAVALVVSVSLLVTRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPP 155
PRW WV AA++ V LV+++ + + ++ + T+ P
Sbjct 94 PRWLWVAAGAAVLLVVGLVIALVI-------ANMSVKNQTAVEPL--------------- 131
Query 156 PPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPPPTTTTPTGPRQVT 215
PP P P++ + T P P TTT + P T TP + V
Sbjct 132 PPMPTPSSTLKPPTTRTMTPTPSIVPAP----------TTTGGSGTPSETPTPGAMQTVV 181
Query 216 YSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVGSVEASSLFRVSKL 275
Y+VTG G ISVTY+D +T+ NV +PWS V+ + +S + + + +
Sbjct 182 YNVTGE---GRAISVTYIDTGDVIQTEFNVALPWSKEVS-LPKSSLHPASVTIINIGHNV 237
Query 276 NCSITTS 282
CS+T +
Sbjct 238 TCSVTVA 244
>gi|254823123|ref|ZP_05228124.1| hypothetical protein MintA_24555 [Mycobacterium intracellulare
ATCC 13950]
Length=257
Score = 45.1 bits (105), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/152 (29%), Positives = 70/152 (47%), Gaps = 17/152 (11%)
Query 143 DEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPPPPPATTTAPPPATTTTAAAPP 202
++ T+ A PP P P T E PT + ++ T+ P P PP T+ P
Sbjct 115 NDAIKTQTAVPPLPAMPETTPESPTPSARKSPTLIPAPIPP------------TSGPELP 162
Query 203 PTTTTPTGPRQVTYSVTGTKAPGDIISVTYVDAAGRRRTQHNVYIPWSMTVTPISQSDVG 262
+TT P + V Y+VTG G IS+ Y+D +T+ NV +PWS V+ +++S
Sbjct 163 TSTTGPAAMQDVVYTVTGE---GRAISIMYIDTGDLIQTEFNVELPWSKQVS-LAKSAAH 218
Query 263 SVEASSLFRVSKLNCSITTSDGTVLSSNSNDG 294
+ + + C++T +G +S G
Sbjct 219 PANVTIVNIGHSVTCTVTV-NGVQVSKRVGGG 249
Lambda K H
0.306 0.126 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 502027544144
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40