BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2199c Length=139 Score E Sequences producing significant alignments: (Bits) Value gi|15609336|ref|NP_216715.1| integral membrane protein [Mycobact... 270 5e-71 gi|118618841|ref|YP_907173.1| integral membrane protein [Mycobac... 260 5e-68 gi|240168260|ref|ZP_04746919.1| integral membrane protein [Mycob... 259 8e-68 gi|15827399|ref|NP_301662.1| hypothetical protein ML0876 [Mycoba... 254 3e-66 gi|296166071|ref|ZP_06848517.1| cytochrome-c oxidase [Mycobacter... 249 1e-64 gi|41408037|ref|NP_960873.1| hypothetical protein MAP1939c [Myco... 247 5e-64 gi|342859910|ref|ZP_08716563.1| cytochrome C oxidase polypeptide... 245 2e-63 gi|254822891|ref|ZP_05227892.1| cytochrome c oxidase polypeptide... 242 1e-62 gi|108800263|ref|YP_640460.1| hypothetical protein Mmcs_3297 [My... 223 1e-56 gi|145223537|ref|YP_001134215.1| hypothetical protein Mflv_2950 ... 209 8e-53 gi|333990343|ref|YP_004522957.1| hypothetical protein JDM601_170... 209 9e-53 gi|315443883|ref|YP_004076762.1| hypothetical protein Mspyr1_228... 209 1e-52 gi|169629049|ref|YP_001702698.1| cytochrome c oxidase polypeptid... 203 8e-51 gi|118467496|ref|YP_888544.1| cytochrome C oxidase polypeptide 4... 201 3e-50 gi|120404534|ref|YP_954363.1| putative integral membrane protein... 197 5e-49 gi|289570315|ref|ZP_06450542.1| conserved membrane protein [Myco... 196 7e-49 gi|54023677|ref|YP_117919.1| hypothetical protein nfa17090 [Noca... 184 5e-45 gi|296139257|ref|YP_003646500.1| cytochrome-c oxidase [Tsukamure... 167 5e-40 gi|333918946|ref|YP_004492527.1| putative cytochrome c oxidase p... 165 2e-39 gi|296393477|ref|YP_003658361.1| cytochrome-c oxidase [Segnilipa... 163 9e-39 gi|326382512|ref|ZP_08204203.1| cytochrome-c oxidase [Gordonia n... 159 1e-37 gi|226307088|ref|YP_002767048.1| cytochrome c oxidase subunit IV... 157 6e-37 gi|312140191|ref|YP_004007527.1| cytochrome c oxidase subunit iv... 155 2e-36 gi|226360278|ref|YP_002778056.1| cytochrome c oxidase subunit IV... 154 6e-36 gi|343924164|ref|ZP_08763727.1| cytochrome c oxidase subunit IV ... 152 1e-35 gi|262202952|ref|YP_003274160.1| cytochrome-c oxidase [Gordonia ... 150 8e-35 gi|111018149|ref|YP_701121.1| hypothetical protein RHA1_ro01136 ... 149 1e-34 gi|317506579|ref|ZP_07964371.1| cytochrome c oxidase polypeptide... 141 3e-32 gi|319951010|ref|ZP_08024877.1| putative integral membrane prote... 134 7e-30 gi|324997993|ref|ZP_08119105.1| integral membrane protein [Pseud... 133 9e-30 gi|257055115|ref|YP_003132947.1| hypothetical protein Svir_10640... 133 1e-29 gi|331698311|ref|YP_004334550.1| cytochrome-c oxidase [Pseudonoc... 125 2e-27 gi|330469380|ref|YP_004407123.1| cytochrome-c oxidase [Verrucosi... 123 1e-26 gi|134098262|ref|YP_001103923.1| integral membrane protein [Sacc... 121 4e-26 gi|284991763|ref|YP_003410317.1| integral membrane protein [Geod... 121 4e-26 gi|302525347|ref|ZP_07277689.1| predicted protein [Streptomyces ... 120 8e-26 gi|145595814|ref|YP_001160111.1| cytochrome-c oxidase [Salinispo... 117 7e-25 gi|159039071|ref|YP_001538324.1| cytochrome-c oxidase [Salinispo... 116 1e-24 gi|291301593|ref|YP_003512871.1| hypothetical protein Snas_4127 ... 115 2e-24 gi|300784106|ref|YP_003764397.1| integral membrane protein [Amyc... 112 1e-23 gi|238060325|ref|ZP_04605034.1| cytochrome c oxidase [Micromonos... 108 2e-22 gi|256375506|ref|YP_003099166.1| cytochrome C oxidase [Actinosyn... 108 3e-22 gi|302869022|ref|YP_003837659.1| cytochrome-c oxidase [Micromono... 105 2e-21 gi|271964185|ref|YP_003338381.1| hypothetical protein Sros_2672 ... 105 3e-21 gi|258653418|ref|YP_003202574.1| hypothetical protein Namu_3254 ... 103 1e-20 gi|72161421|ref|YP_289078.1| integral membrane protein [Thermobi... 103 1e-20 gi|297161220|gb|ADI10932.1| hypothetical protein SBI_07812 [Stre... 101 4e-20 gi|269127286|ref|YP_003300656.1| hypothetical protein Tcur_3076 ... 101 4e-20 gi|284030715|ref|YP_003380646.1| hypothetical protein Kfla_2782 ... 100 5e-20 gi|329941017|ref|ZP_08290297.1| hypothetical protein SGM_5789 [S... 100 6e-20 >gi|15609336|ref|NP_216715.1| integral membrane protein [Mycobacterium tuberculosis H37Rv] gi|15841690|ref|NP_336727.1| hypothetical protein MT2255 [Mycobacterium tuberculosis CDC1551] gi|31793378|ref|NP_855871.1| integral membrane protein [Mycobacterium bovis AF2122/97] 80 more sequence titles Length=139 Score = 270 bits (691), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 139/139 (100%), Positives = 139/139 (100%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA Sbjct 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF Sbjct 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 ILASAAGLVFEYYVGPEKH Sbjct 121 ILASAAGLVFEYYVGPEKH 139 >gi|118618841|ref|YP_907173.1| integral membrane protein [Mycobacterium ulcerans Agy99] gi|183983234|ref|YP_001851525.1| integral membrane protein [Mycobacterium marinum M] gi|118570951|gb|ABL05702.1| conserved integral membrane protein [Mycobacterium ulcerans Agy99] gi|183176560|gb|ACC41670.1| conserved integral membrane protein [Mycobacterium marinum M] Length=139 Score = 260 bits (665), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 132/139 (95%), Positives = 135/139 (98%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEFVAAFFVVTAVLYGV+TS+FATGGVEWAGTTALALTGGMALIVATFFRFVA Sbjct 1 MHIEARLFEFVAAFFVVTAVLYGVVTSIFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAA GIALWLPWLI AGV F Sbjct 61 RRLDTRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAATGIALWLPWLIVAGVVF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 IL SAAGLVFEYYVGPEKH Sbjct 121 ILGSAAGLVFEYYVGPEKH 139 >gi|240168260|ref|ZP_04746919.1| integral membrane protein [Mycobacterium kansasii ATCC 12478] Length=139 Score = 259 bits (663), Expect = 8e-68, Method: Compositional matrix adjust. Identities = 130/139 (94%), Positives = 135/139 (98%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEFVAAFFV+ AVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA Sbjct 1 MHIEARLFEFVAAFFVLCAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYEGAEISDGAGELGFFSPHSWWPI+VALSGSVAA G+ALWLPWLI AGV F Sbjct 61 RRLDTRPEDYEGAEISDGAGELGFFSPHSWWPILVALSGSVAATGVALWLPWLIVAGVVF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +LASAAGLVFEYYVGPEKH Sbjct 121 VLASAAGLVFEYYVGPEKH 139 >gi|15827399|ref|NP_301662.1| hypothetical protein ML0876 [Mycobacterium leprae TN] gi|221229876|ref|YP_002503292.1| hypothetical protein MLBr_00876 [Mycobacterium leprae Br4923] gi|62900045|sp|Q9CCF0.1|COX4_MYCLE RecName: Full=Probable cytochrome c oxidase polypeptide 4; AltName: Full=Cytochrome aa3 subunit 4; AltName: Full=Cytochrome c oxidase polypeptide IV gi|13092949|emb|CAC31257.1| putative membrane protein [Mycobacterium leprae] gi|219932983|emb|CAR70971.1| putative membrane protein [Mycobacterium leprae Br4923] Length=139 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 127/139 (92%), Positives = 133/139 (96%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEFVA FFV+ AVLYGVLTSMFATGGV+W GTTALALTGG+ALIVATFFRFVA Sbjct 1 MHIEARLFEFVAVFFVIMAVLYGVLTSMFATGGVDWVGTTALALTGGLALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD RPEDYEGAEISDGAGELGFFSPHSWWP++VALSGSVAAVGIALWLPWLI AGV F Sbjct 61 RRLDIRPEDYEGAEISDGAGELGFFSPHSWWPVLVALSGSVAAVGIALWLPWLIVAGVVF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +LASAAGLVFEYYVGPEKH Sbjct 121 VLASAAGLVFEYYVGPEKH 139 >gi|296166071|ref|ZP_06848517.1| cytochrome-c oxidase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898566|gb|EFG78126.1| cytochrome-c oxidase [Mycobacterium parascrofulaceum ATCC BAA-614] Length=139 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 122/139 (88%), Positives = 133/139 (96%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEFVA FF+V AVLYGVLT++FATGG EWAGTTALALTGG+A+IVATFFRFVA Sbjct 1 MHIEARLFEFVAGFFIVVAVLYGVLTALFATGGEEWAGTTALALTGGLAMIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D+RPEDYEGAEISDGAGELGFFSPHSWWPI+VALS SV+AVGIALWLPWLIAAGV F Sbjct 61 RRIDTRPEDYEGAEISDGAGELGFFSPHSWWPILVALSASVSAVGIALWLPWLIAAGVTF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +LAS AGL+FEYYVGPEKH Sbjct 121 VLASVAGLIFEYYVGPEKH 139 >gi|41408037|ref|NP_960873.1| hypothetical protein MAP1939c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466685|ref|YP_881496.1| cytochrome C oxidase polypeptide 4 [Mycobacterium avium 104] gi|254774964|ref|ZP_05216480.1| cytochrome c oxidase polypeptide 4 [Mycobacterium avium subsp. avium ATCC 25291] gi|62899980|sp|Q73YL6.1|COX4_MYCPA RecName: Full=Probable cytochrome c oxidase polypeptide 4; AltName: Full=Cytochrome aa3 subunit 4; AltName: Full=Cytochrome c oxidase polypeptide IV gi|41396392|gb|AAS04256.1| hypothetical protein MAP_1939c [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167972|gb|ABK68869.1| probable cytochrome c oxidase polypeptide 4 [Mycobacterium avium 104] gi|336461923|gb|EGO40776.1| Cytochrome c oxidase subunit IV [Mycobacterium avium subsp. paratuberculosis S397] Length=139 Score = 247 bits (630), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 121/139 (88%), Positives = 133/139 (96%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+A FF +TA+LYGVLT++FATGG EWAGTTALALTGG+ALIVATFFRFVA Sbjct 1 MHIEARLFEFIAGFFFLTALLYGVLTALFATGGEEWAGTTALALTGGLALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D+RPEDYEGAEISDGAGELGFFSPHSWWPI++ALSGSVAAVGIALWLPWLI AGV F Sbjct 61 RRIDTRPEDYEGAEISDGAGELGFFSPHSWWPILIALSGSVAAVGIALWLPWLIVAGVMF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 IL+S AGLVFEYY+GPEKH Sbjct 121 ILSSVAGLVFEYYLGPEKH 139 >gi|342859910|ref|ZP_08716563.1| cytochrome C oxidase polypeptide 4 [Mycobacterium colombiense CECT 3035] gi|342133042|gb|EGT86262.1| cytochrome C oxidase polypeptide 4 [Mycobacterium colombiense CECT 3035] Length=139 Score = 245 bits (625), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 118/139 (85%), Positives = 129/139 (93%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+A FF+V A LYGVLT++FATGGVEWAGTTAL LTGG+A+I ATFFRFVA Sbjct 1 MHIEARLFEFIAGFFIVVAALYGVLTALFATGGVEWAGTTALVLTGGLAMITATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYEGAEISDGAGELGFFSPHSWWPI++ALSGSV AVGIALWLPWLI AGV F Sbjct 61 RRLDTRPEDYEGAEISDGAGELGFFSPHSWWPILIALSGSVVAVGIALWLPWLIVAGVMF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +L S AGLVFEYY+GPEKH Sbjct 121 VLTSVAGLVFEYYIGPEKH 139 >gi|254822891|ref|ZP_05227892.1| cytochrome c oxidase polypeptide 4 [Mycobacterium intracellulare ATCC 13950] Length=139 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 119/139 (86%), Positives = 130/139 (94%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+A FF V A+LYGVLT++FATGG EWAGTTALALTGG+ALIVATFFRFVA Sbjct 1 MHIEARLFEFIAGFFFVVALLYGVLTALFATGGEEWAGTTALALTGGLALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYEGAEISDGAGELGFFSPHSWWPI++ALSGSV AVGI LWLPWLI AGV F Sbjct 61 RRLDTRPEDYEGAEISDGAGELGFFSPHSWWPILIALSGSVVAVGIGLWLPWLIFAGVMF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +L+S AGLVFEYY+GPEKH Sbjct 121 VLSSVAGLVFEYYLGPEKH 139 >gi|108800263|ref|YP_640460.1| hypothetical protein Mmcs_3297 [Mycobacterium sp. MCS] gi|119869391|ref|YP_939343.1| hypothetical protein Mkms_3359 [Mycobacterium sp. KMS] gi|126435886|ref|YP_001071577.1| hypothetical protein Mjls_3308 [Mycobacterium sp. JLS] gi|108770682|gb|ABG09404.1| putative conserved integral membrane protein [Mycobacterium sp. MCS] gi|119695480|gb|ABL92553.1| putative conserved integral membrane protein [Mycobacterium sp. KMS] gi|126235686|gb|ABN99086.1| putative conserved integral membrane protein [Mycobacterium sp. JLS] Length=139 Score = 223 bits (567), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 108/139 (78%), Positives = 121/139 (88%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+ AFF ++AV+Y LT+MF GGVEWAGTTAL LT G+ LIV TFFRFVA Sbjct 1 MHIEARLFEFLTAFFALSAVVYATLTAMFGNGGVEWAGTTALVLTTGLTLIVGTFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEISDGAGELGFF+PHSWWPIM+ALS S AAVG ALWLPWL+ AG+ F Sbjct 61 RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPIMIALSFSTAAVGAALWLPWLLVAGIVF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +L SAAGLVFEY+ GPEKH Sbjct 121 VLVSAAGLVFEYHWGPEKH 139 >gi|145223537|ref|YP_001134215.1| hypothetical protein Mflv_2950 [Mycobacterium gilvum PYR-GCK] gi|145216023|gb|ABP45427.1| putative conserved integral membrane protein [Mycobacterium gilvum PYR-GCK] Length=139 Score = 209 bits (533), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 110/139 (80%), Positives = 123/139 (89%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+ AFF + AV+Y VLT+MFATGGVEWAGTTAL LT G+ LI TFFRFVA Sbjct 1 MHIEARLFEFLTAFFALCAVVYAVLTAMFATGGVEWAGTTALFLTTGLTLITGTFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEI+DGAGELGFFSPHSWWPIM+ALSGS+ AVG+A+WLPWLI AGV F Sbjct 61 RRLDTRPEDYEDAEIADGAGELGFFSPHSWWPIMIALSGSITAVGMAMWLPWLIVAGVCF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 IL + +GLVFEYY GPEKH Sbjct 121 ILTTVSGLVFEYYTGPEKH 139 >gi|333990343|ref|YP_004522957.1| hypothetical protein JDM601_1703 [Mycobacterium sp. JDM601] gi|333486311|gb|AEF35703.1| integral membrane protein [Mycobacterium sp. JDM601] Length=139 Score = 209 bits (533), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 116/139 (84%), Positives = 127/139 (92%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IE+RLFEFVA FFVV V+Y VLTS+FATGGVEWAG+TAL LTG MALIVATFFRFVA Sbjct 1 MRIESRLFEFVATFFVVVGVVYAVLTSLFATGGVEWAGSTALILTGVMALIVATFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEISDGAGELGFFSPHSWWPI++ALSGSVAAVGIALWLPWLI AGV Sbjct 61 RRLDTRPEDYEAAEISDGAGELGFFSPHSWWPILIALSGSVAAVGIALWLPWLITAGVVL 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +++S AGLVFEYY+GPEKH Sbjct 121 VISSVAGLVFEYYIGPEKH 139 >gi|315443883|ref|YP_004076762.1| hypothetical protein Mspyr1_22820 [Mycobacterium sp. Spyr1] gi|315262186|gb|ADT98927.1| hypothetical protein Mspyr1_22820 [Mycobacterium sp. Spyr1] Length=139 Score = 209 bits (532), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 110/139 (80%), Positives = 123/139 (89%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+ AFF + AV+Y VLT+MFATGGVEWAGTTAL LT G+ LI TFFRFVA Sbjct 1 MHIEARLFEFLTAFFALCAVVYAVLTAMFATGGVEWAGTTALFLTTGLTLITGTFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEI+DGAGELGFFSPHSWWPIM+ALSGS+ AVG+A+WLPWLI AGV F Sbjct 61 RRLDTRPEDYEDAEIADGAGELGFFSPHSWWPIMIALSGSITAVGMAMWLPWLIIAGVCF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 IL + +GLVFEYY GPEKH Sbjct 121 ILTTVSGLVFEYYTGPEKH 139 >gi|169629049|ref|YP_001702698.1| cytochrome c oxidase polypeptide 4 [Mycobacterium abscessus ATCC 19977] gi|169241016|emb|CAM62044.1| Probable cytochrome c oxidase polypeptide 4 [Mycobacterium abscessus] Length=139 Score = 203 bits (516), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 97/139 (70%), Positives = 121/139 (88%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFE + FF + V+Y VLT+M+A GGVEWAGTTA+ +T G++LI++TFFRFVA Sbjct 1 MHIEARLFEILTGFFALATVVYAVLTAMYANGGVEWAGTTAMVMTTGLSLIISTFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEI+DGAGELGF+SPHSWWPIM+AL+ + AVG+ALWLPWL+AAG F Sbjct 61 RRLDTRPEDYEDAEIADGAGELGFYSPHSWWPIMIALAAATTAVGVALWLPWLLAAGAVF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 +L++ AGLVFEY++G EKH Sbjct 121 VLSAVAGLVFEYHIGAEKH 139 >gi|118467496|ref|YP_888544.1| cytochrome C oxidase polypeptide 4 [Mycobacterium smegmatis str. MC2 155] gi|118168783|gb|ABK69679.1| probable cytochrome c oxidase polypeptide 4 [Mycobacterium smegmatis str. MC2 155] Length=139 Score = 201 bits (512), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 109/139 (79%), Positives = 121/139 (88%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFE + AFF + AV+Y VLT+MFATGGVEWAGTTAL LT G+ LI TFFRFVA Sbjct 1 MHIEARLFEILTAFFALAAVVYAVLTAMFATGGVEWAGTTALVLTTGLTLITGTFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEISDGAGELGFF+PHSWWPI+++LS S AAVG ALWLPWLIAAGVAF Sbjct 61 RRLDTRPEDYEDAEISDGAGELGFFAPHSWWPILISLSFSTAAVGAALWLPWLIAAGVAF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 ++ S GLVFEYY GPEKH Sbjct 121 VITSVCGLVFEYYWGPEKH 139 >gi|120404534|ref|YP_954363.1| putative integral membrane protein [Mycobacterium vanbaalenii PYR-1] gi|119957352|gb|ABM14357.1| putative conserved integral membrane protein [Mycobacterium vanbaalenii PYR-1] Length=139 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 107/139 (77%), Positives = 122/139 (88%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 MHIEARLFEF+ AFF ++ V+Y VLT +FA GG+EWAGTTALALT G+ LI TFFRFVA Sbjct 1 MHIEARLFEFLTAFFALSTVVYAVLTDLFARGGIEWAGTTALALTTGLTLITGTFFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEI+DGAGELGFFSPHSWWP+M+AL+GSV AVG+ALWLPWLI AGV F Sbjct 61 RRLDTRPEDYEDAEIADGAGELGFFSPHSWWPVMIALAGSVTAVGMALWLPWLIVAGVCF 120 Query 121 ILASAAGLVFEYYVGPEKH 139 IL + AGLVFEY+ GPEKH Sbjct 121 ILTTVAGLVFEYHWGPEKH 139 >gi|289570315|ref|ZP_06450542.1| conserved membrane protein [Mycobacterium tuberculosis T17] gi|289544069|gb|EFD47717.1| conserved membrane protein [Mycobacterium tuberculosis T17] Length=104 Score = 196 bits (499), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 100/100 (100%), Positives = 100/100 (100%), Gaps = 0/100 (0%) Query 40 TALALTGGMALIVATFFRFVARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSG 99 TALALTGGMALIVATFFRFVARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSG Sbjct 5 TALALTGGMALIVATFFRFVARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSG 64 Query 100 SVAAVGIALWLPWLIAAGVAFILASAAGLVFEYYVGPEKH 139 SVAAVGIALWLPWLIAAGVAFILASAAGLVFEYYVGPEKH Sbjct 65 SVAAVGIALWLPWLIAAGVAFILASAAGLVFEYYVGPEKH 104 >gi|54023677|ref|YP_117919.1| hypothetical protein nfa17090 [Nocardia farcinica IFM 10152] gi|62899936|sp|Q5YZ36.1|COX4_NOCFA RecName: Full=Probable cytochrome c oxidase polypeptide 4; AltName: Full=Cytochrome aa3 subunit 4; AltName: Full=Cytochrome c oxidase polypeptide IV gi|54015185|dbj|BAD56555.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=138 Score = 184 bits (466), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 90/139 (65%), Positives = 114/139 (83%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEAR+FE + FF++ V+YG T+ TG VEWAGTTA+ LT G++LI+ T+FRFVA Sbjct 1 MRIEARIFELLTVFFIIVGVVYGFFTAQSRTG-VEWAGTTAIVLTAGLSLIIGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD RPEDYE AEI DGAG+LGFFSP S+WPI++A +GSVAA+G+A + PWLIA GV Sbjct 60 RRLDLRPEDYEDAEIVDGAGDLGFFSPGSFWPILLAGAGSVAALGLAFFEPWLIAVGVIC 119 Query 121 ILASAAGLVFEYYVGPEKH 139 ++A+AAGLVFEY++GPEKH Sbjct 120 VIAAAAGLVFEYHLGPEKH 138 >gi|296139257|ref|YP_003646500.1| cytochrome-c oxidase [Tsukamurella paurometabola DSM 20162] gi|296027391|gb|ADG78161.1| Cytochrome-c oxidase [Tsukamurella paurometabola DSM 20162] Length=143 Score = 167 bits (423), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 82/143 (58%), Positives = 107/143 (75%), Gaps = 4/143 (2%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATG----GVEWAGTTALALTGGMALIVATFF 56 M +EA+LFE++ FF +LY V+T ++ TG GVEW GTT + LTGG+ LI T+F Sbjct 1 MKVEAKLFEWLTVFFFAVGILYTVVTYIWGTGHDGGGVEWVGTTGMFLTGGLTLITGTYF 60 Query 57 RFVARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAA 116 RFVA R+D+RPEDYE AE+SDGAGELGFFSPHSWWPI+++ S ++ + +AL L WL A Sbjct 61 RFVANRVDTRPEDYEDAEVSDGAGELGFFSPHSWWPILLSASVAIVGISVALQLYWLWAF 120 Query 117 GVAFILASAAGLVFEYYVGPEKH 139 G ++A+A GLVFEY+ GPEKH Sbjct 121 GGFLVVAAAWGLVFEYHKGPEKH 143 >gi|333918946|ref|YP_004492527.1| putative cytochrome c oxidase polypeptide 4 [Amycolicicoccus subflavus DQS3-9A1] gi|333481167|gb|AEF39727.1| putative cytochrome c oxidase polypeptide 4 [Amycolicicoccus subflavus DQS3-9A1] Length=138 Score = 165 bits (417), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 76/139 (55%), Positives = 108/139 (78%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEA+LFE + FF++ ++Y V T++ + G+EW G TA+AL+ G+ LIV T+FRFVA Sbjct 1 MKIEAKLFELLTVFFIIVGIIYVVFTNI-SRAGLEWVGITAIALSAGLTLIVGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D+RPEDY+ A+I DG+G+LGFF PHS+WP+++ L+ +V AVG A W++AAGV Sbjct 60 RRIDTRPEDYDEADIQDGSGDLGFFPPHSFWPLILGLAAAVTAVGFAFVQWWVVAAGVVA 119 Query 121 ILASAAGLVFEYYVGPEKH 139 IL + AGLVFEY++GPE+H Sbjct 120 ILVATAGLVFEYHLGPEQH 138 >gi|296393477|ref|YP_003658361.1| cytochrome-c oxidase [Segniliparus rotundus DSM 44985] gi|296180624|gb|ADG97530.1| Cytochrome-c oxidase [Segniliparus rotundus DSM 44985] Length=138 Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 80/139 (58%), Positives = 106/139 (77%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EARLFE + FF AV+YGV+T+ ++ G+EW G TA+ LTGG+ LI TF RF+A Sbjct 1 MKVEARLFELLTGFFFFMAVVYGVVTA-YSRVGMEWVGVTAITLTGGLTLITGTFLRFIA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED AE+++GAGELGFFSP SWWPI++A S + AV +A+ L WL+AAG A Sbjct 60 RRIELRPEDRVDAEVAEGAGELGFFSPGSWWPILIAGSAGIVAVALAMDLFWLLAAGAAC 119 Query 121 ILASAAGLVFEYYVGPEKH 139 ++A+ AGLVFEY+ GPEKH Sbjct 120 VIATVAGLVFEYHRGPEKH 138 >gi|326382512|ref|ZP_08204203.1| cytochrome-c oxidase [Gordonia neofelifaecis NRRL B-59395] gi|326198631|gb|EGD55814.1| cytochrome-c oxidase [Gordonia neofelifaecis NRRL B-59395] Length=138 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/139 (59%), Positives = 104/139 (75%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EAR+FE +A FF++ V+Y V T + TG VEWAG TA+ +GG+ALI T+FRFVA Sbjct 1 MKVEARVFEALALFFILMGVIYSVATFYYRTG-VEWAGATAMFFSGGLALIAGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPEDYE AEI DGAGELGFFSPHS+WPIM+A + ++ A+G A W V Sbjct 60 RRVEIRPEDYEEAEIEDGAGELGFFSPHSYWPIMIAGAAALFAIGFATANWWFALGIVPI 119 Query 121 ILASAAGLVFEYYVGPEKH 139 I+A+ AGLVFEY+VGPEKH Sbjct 120 IIATVAGLVFEYHVGPEKH 138 >gi|226307088|ref|YP_002767048.1| cytochrome c oxidase subunit IV [Rhodococcus erythropolis PR4] gi|229490391|ref|ZP_04384232.1| cytochrome c oxidase polypeptide 4 [Rhodococcus erythropolis SK121] gi|226186205|dbj|BAH34309.1| putative cytochrome c oxidase subunit IV [Rhodococcus erythropolis PR4] gi|229322681|gb|EEN88461.1| cytochrome c oxidase polypeptide 4 [Rhodococcus erythropolis SK121] Length=138 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/139 (64%), Positives = 113/139 (82%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEA+LFE + FF++ A++YGV T++ TG +EWAG TA+ L+ G+ LIV T+FRFVA Sbjct 1 MKIEAKLFEILTMFFILVAIIYGVFTALSRTG-IEWAGLTAIVLSAGLTLIVGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDY+ AEISDGAGELGFFSP S+WPI++A + ++AAV +A + PWLIA V Sbjct 60 RRLDTRPEDYDDAEISDGAGELGFFSPGSFWPILLAAAAALAAVSLAYFQPWLIAVAVVC 119 Query 121 ILASAAGLVFEYYVGPEKH 139 +LA+AAGLVFEYY GPEKH Sbjct 120 VLAAAAGLVFEYYTGPEKH 138 >gi|312140191|ref|YP_004007527.1| cytochrome c oxidase subunit iv [Rhodococcus equi 103S] gi|325676927|ref|ZP_08156599.1| cytochrome c oxidase polypeptide 4 [Rhodococcus equi ATCC 33707] gi|311889530|emb|CBH48847.1| cytochrome c oxidase subunit IV [Rhodococcus equi 103S] gi|325552227|gb|EGD21917.1| cytochrome c oxidase polypeptide 4 [Rhodococcus equi ATCC 33707] Length=138 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/139 (60%), Positives = 112/139 (81%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEA+LFE + FF++ A++YGV T+M TG +EWAG TA+ L+ G++LIV T+FRFVA Sbjct 1 MKIEAKLFEILTVFFILVAIVYGVFTAMSRTG-IEWAGLTAIILSAGLSLIVGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEISDG+G+LGFFSP S+WPI++A + + AA+ +A + PW+I V Sbjct 60 RRLDTRPEDYEEAEISDGSGDLGFFSPGSFWPILLAGAAAFAAISLAFFQPWMIVVAVVL 119 Query 121 ILASAAGLVFEYYVGPEKH 139 +L +AAGLVFEY++GPEKH Sbjct 120 VLTAAAGLVFEYHLGPEKH 138 >gi|226360278|ref|YP_002778056.1| cytochrome c oxidase subunit IV [Rhodococcus opacus B4] gi|226238763|dbj|BAH49111.1| putative cytochrome c oxidase subunit IV [Rhodococcus opacus B4] Length=138 Score = 154 bits (388), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 83/139 (60%), Positives = 110/139 (80%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEA+LFE + FF++ A++YGV T++ TG +EWAG T + L+ G+ LI+ T+FRFVA Sbjct 1 MKIEAKLFEILTVFFILVAIVYGVFTAVSRTG-IEWAGLTGICLSAGLTLIIGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEI+DGAG+LGFFSP S+WPI++A + + AV +A + PW+I V Sbjct 60 RRLDTRPEDYEDAEIADGAGDLGFFSPGSYWPILLAAAAAFVAVSMAFFQPWMIVVAVVA 119 Query 121 ILASAAGLVFEYYVGPEKH 139 +LA+AAGLVFEYYVGPEKH Sbjct 120 VLAAAAGLVFEYYVGPEKH 138 >gi|343924164|ref|ZP_08763727.1| cytochrome c oxidase subunit IV [Gordonia alkanivorans NBRC 16433] gi|343765969|dbj|GAA10653.1| cytochrome c oxidase subunit IV [Gordonia alkanivorans NBRC 16433] Length=138 Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 82/139 (59%), Positives = 97/139 (70%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEARLFE + AFF +T V Y + T+ F + G+EW G L G+ LI TFFRFV+ Sbjct 1 MKIEARLFEMLTAFFALTGVAYTLFTA-FTSKGIEWVGVVGLFFAAGLTLIAGTFFRFVS 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPEDYE AEI DGAGELGFFSPHSWWPI++AL S AVG A WL Sbjct 60 RRVEIRPEDYEDAEIEDGAGELGFFSPHSWWPILIALGASTFAVGFASGNWWLAIFAAVA 119 Query 121 ILASAAGLVFEYYVGPEKH 139 I+ +AAGLVFEY+VGPEKH Sbjct 120 IMGAAAGLVFEYHVGPEKH 138 >gi|262202952|ref|YP_003274160.1| cytochrome-c oxidase [Gordonia bronchialis DSM 43247] gi|262086299|gb|ACY22267.1| Cytochrome-c oxidase [Gordonia bronchialis DSM 43247] Length=138 Score = 150 bits (378), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 75/139 (54%), Positives = 95/139 (69%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EARLFE + FF + V Y + T+ F + G EW G + + G+ LI T+FRFVA Sbjct 1 MKVEARLFELLTVFFALAGVAYTLFTT-FTSKGTEWVGVVGMFFSAGLTLIAGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED+E AEI DGAGELGFFSPHSWWPI+VA ++ AV A WL A Sbjct 60 RRVEIRPEDFEDAEIEDGAGELGFFSPHSWWPILVAGGAALFAVAFATGNFWLAIFAAAV 119 Query 121 ILASAAGLVFEYYVGPEKH 139 I+ +AAG+VFEY+VGPEKH Sbjct 120 IMGTAAGMVFEYHVGPEKH 138 >gi|111018149|ref|YP_701121.1| hypothetical protein RHA1_ro01136 [Rhodococcus jostii RHA1] gi|110817679|gb|ABG92963.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=138 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 84/139 (61%), Positives = 110/139 (80%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IEA+LFE + FF++ A++YGV T++ TG +EWAG T + L+ G+ LI+ T+FRFVA Sbjct 1 MKIEAKLFEILTVFFILVAIVYGVFTAVSRTG-IEWAGLTGICLSAGLTLIIGTYFRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD+RPEDYE AEI+DGAG+LGFFSP S+WPI++A S + AV +A + PW+I V Sbjct 60 RRLDTRPEDYEDAEIADGAGDLGFFSPGSYWPILLAASAAFVAVAMAFFQPWMIVVAVVA 119 Query 121 ILASAAGLVFEYYVGPEKH 139 +LA+AAGLVFEYYVGPEKH Sbjct 120 VLAAAAGLVFEYYVGPEKH 138 >gi|317506579|ref|ZP_07964371.1| cytochrome c oxidase polypeptide 4 [Segniliparus rugosus ATCC BAA-974] gi|316255088|gb|EFV14366.1| cytochrome c oxidase polypeptide 4 [Segniliparus rugosus ATCC BAA-974] Length=138 Score = 141 bits (355), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 80/139 (58%), Positives = 104/139 (75%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EARLFE + FF V AV+YGV T+ ++ G+EW G TA+ LTGG+ LI TF RF+A Sbjct 1 MKVEARLFEILTGFFFVMAVIYGVFTA-YSRAGMEWVGVTAITLTGGLTLITGTFLRFIA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED +EI++GAGELGFFSP SWWPI+VA S+ AV +A+ L WL+AAG Sbjct 60 RRIELRPEDRLDSEIAEGAGELGFFSPGSWWPILVAGGASIIAVALAMDLFWLLAAGAVS 119 Query 121 ILASAAGLVFEYYVGPEKH 139 ++A+ AGLVFEY+ G EKH Sbjct 120 VVAAVAGLVFEYHRGAEKH 138 >gi|319951010|ref|ZP_08024877.1| putative integral membrane protein [Dietzia cinnamea P4] gi|319435319|gb|EFV90572.1| putative integral membrane protein [Dietzia cinnamea P4] Length=138 Score = 134 bits (336), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 69/139 (50%), Positives = 92/139 (67%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M R+F+ + F + A+ Y LT TG VEW GTTAL L+ G++L++ + RFVA Sbjct 1 MSATVRIFDALFIFLAILAIAYAYLTGTSRTG-VEWVGTTALVLSAGLSLLIGGYLRFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+ + PEDYE AE+SDGAGELGFFSPHS+WP ++A S V G A W W++ G Sbjct 60 RRISTLPEDYEEAEVSDGAGELGFFSPHSFWPFLLAFSVFVIGYGAAFWNWWVLIGGALG 119 Query 121 ILASAAGLVFEYYVGPEKH 139 ++ A+GLVFEY+ G EKH Sbjct 120 VIFCASGLVFEYHWGREKH 138 >gi|324997993|ref|ZP_08119105.1| integral membrane protein [Pseudonocardia sp. P1] Length=132 Score = 133 bits (334), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 68/139 (49%), Positives = 93/139 (67%), Gaps = 7/139 (5%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M IE+R+FE FF++ A++Y MF G E G TAL LT G++LIV T+FRFV+ Sbjct 1 MKIESRIFEICTGFFILCAIVY-----MFVAG--EVVGVTALWLTAGLSLIVGTYFRFVS 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRL+ RPED AE+SDGAGE+GFFSP S+WP+ +A + + +G+A + W+I G Sbjct 54 RRLEERPEDNPEAEVSDGAGEVGFFSPGSYWPLGLAAAAAFTGLGLAFFYVWMIVVGGTL 113 Query 121 ILASAAGLVFEYYVGPEKH 139 +L + GLVFEY+ GP H Sbjct 114 VLIAVGGLVFEYHRGPAHH 132 >gi|257055115|ref|YP_003132947.1| hypothetical protein Svir_10640 [Saccharomonospora viridis DSM 43017] gi|256584987|gb|ACU96120.1| hypothetical protein Svir_10640 [Saccharomonospora viridis DSM 43017] Length=139 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 71/139 (52%), Positives = 100/139 (72%), Gaps = 0/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EAR+F+ VA F +V A++Y V+T + GVE GT AL L+GG+AL+V ++FRFVA Sbjct 1 MKVEARVFDIVAIFGIVIAIIYAVMTGIMTQDGVEPVGTVALLLSGGLALLVGSYFRFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED+E AEISDGAGELGFFSP S+WP++VA ++ +V +A + WLI Sbjct 61 RRIEPRPEDHEDAEISDGAGELGFFSPGSYWPVVVAAGCALVSVALAFFQVWLIILSGIL 120 Query 121 ILASAAGLVFEYYVGPEKH 139 ++ + GLVFEY+ GP + Sbjct 121 LVMAIGGLVFEYHTGPRRQ 139 >gi|331698311|ref|YP_004334550.1| cytochrome-c oxidase [Pseudonocardia dioxanivorans CB1190] gi|326953000|gb|AEA26697.1| Cytochrome-c oxidase [Pseudonocardia dioxanivorans CB1190] Length=132 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 64/139 (47%), Positives = 91/139 (66%), Gaps = 7/139 (5%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +E+R+FE AFF + A++Y ++T E G L LTGG++LI+ T+FRFV+ Sbjct 1 MKVESRIFEITTAFFFIAAIVYTIVTK-------EAVGIACLFLTGGLSLIIGTYFRFVS 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRL++RPED AE+SDGAGE+GFFSP S+WPI +A + ++ V +A W WL+ Sbjct 54 RRLETRPEDNPDAEVSDGAGEVGFFSPGSYWPIGLAAAAALVGVALAFWFIWLLVIAGVL 113 Query 121 ILASAAGLVFEYYVGPEKH 139 +L GLVFEY++ P H Sbjct 114 LLIMVGGLVFEYHLRPADH 132 >gi|330469380|ref|YP_004407123.1| cytochrome-c oxidase [Verrucosispora maris AB-18-032] gi|328812351|gb|AEB46523.1| cytochrome-c oxidase [Verrucosispora maris AB-18-032] Length=142 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 64/138 (47%), Positives = 88/138 (64%), Gaps = 0/138 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M E R+F +AAF + AVLYG T + G VEW GT AL L+ + + FF FV+ Sbjct 1 MKTEWRIFLTIAAFLLFAAVLYGGWTWADSGGRVEWIGTVALLLSFLLCSMCGGFFWFVS 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D RPED EI+DGAGE+GFFSP S+WP +AL+ ++A +G+ W WL+ G Sbjct 61 RRIDLRPEDRPDGEIADGAGEIGFFSPGSYWPFGLALAATIAGLGLVFWQMWLLGLGAVA 120 Query 121 ILASAAGLVFEYYVGPEK 138 ++ +A GL+FEYY G + Sbjct 121 VIFAACGLLFEYYSGTRR 138 >gi|134098262|ref|YP_001103923.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|291004317|ref|ZP_06562290.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] gi|133910885|emb|CAM00998.1| integral membrane protein [Saccharopolyspora erythraea NRRL 2338] Length=132 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/138 (48%), Positives = 93/138 (68%), Gaps = 7/138 (5%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EA++F ++ FF ++A++YG E GT AL L GG++L++ T+F+FVA Sbjct 1 MKVEAKIFNYITFFFFLSAIVYGFWAK-------EPVGTVALILVGGLSLLIGTYFQFVA 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED + AEISDGAGELGFFSP S+WP+ +A + + A V +A + W+I VA Sbjct 54 RRIEPRPEDNDDAEISDGAGELGFFSPGSYWPVGLAAAAAFAGVALAFFHVWMIVIAVAV 113 Query 121 ILASAAGLVFEYYVGPEK 138 +L AGLVFEY+ GP Sbjct 114 VLIMVAGLVFEYHTGPNH 131 >gi|284991763|ref|YP_003410317.1| integral membrane protein [Geodermatophilus obscurus DSM 43160] gi|284065008|gb|ADB75946.1| integral membrane protein [Geodermatophilus obscurus DSM 43160] Length=133 Score = 121 bits (303), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 64/139 (47%), Positives = 88/139 (64%), Gaps = 7/139 (5%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EA +F + F +V A +YG+ + E GTTAL L+GG+ +V FF FV+ Sbjct 1 MKVEALIFNAIGVFCLVMAAVYGIWSR-------EPIGTTALVLSGGLTFLVGGFFWFVS 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D+RPED + A+I+DGAGELGFFSP S+WP +ALS + + +A + WLI A Sbjct 54 RRIDARPEDRKDADIADGAGELGFFSPGSYWPFGIALSAGLMGLALAFFYTWLILLAGAA 113 Query 121 ILASAAGLVFEYYVGPEKH 139 IL + GL+FEYYVG Sbjct 114 ILITVGGLLFEYYVGQNAQ 132 >gi|302525347|ref|ZP_07277689.1| predicted protein [Streptomyces sp. AA4] gi|302434242|gb|EFL06058.1| predicted protein [Streptomyces sp. AA4] Length=140 Score = 120 bits (300), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 65/139 (47%), Positives = 94/139 (68%), Gaps = 1/139 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATG-GVEWAGTTALALTGGMALIVATFFRFV 59 M +EAR+F VA F V+ +Y V+T++F T E G AL LTGG+A + ++ +FV Sbjct 1 MKVEARIFYMVAGFAVLMTAVYWVMTALFTTDQKAEPVGIVALFLTGGLAFLAGSYMQFV 60 Query 60 ARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVA 119 +RR+++RPED E AEISDGAGELGFFSP S+WP+ +A + +A + +A + WL+ + Sbjct 61 SRRIEARPEDREDAEISDGAGELGFFSPGSYWPVALAAAAGLAGLALAFFHIWLLVMAIV 120 Query 120 FILASAAGLVFEYYVGPEK 138 +L + GLVFEY+ GPE Sbjct 121 ALLIAVGGLVFEYHTGPEH 139 >gi|145595814|ref|YP_001160111.1| cytochrome-c oxidase [Salinispora tropica CNB-440] gi|145305151|gb|ABP55733.1| Cytochrome-c oxidase [Salinispora tropica CNB-440] Length=141 Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 66/139 (48%), Positives = 89/139 (65%), Gaps = 3/139 (2%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGG-VEWAGTTALALTGGMALIVATFFRFV 59 M E R+F +A F + LYG T + GG +EW GT AL L+ + L+ FF FV Sbjct 1 MKTEWRIFLTIAGFLLFATALYGGWT--YGDGGQIEWVGTIALLLSFLLCLMCGGFFWFV 58 Query 60 ARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVA 119 ARR+D RPED AEISDGAGE+GFFSP S+WP +AL+ +VA +G+ W WL+A G+ Sbjct 59 ARRIDLRPEDRPDAEISDGAGEVGFFSPGSYWPFGIALASTVAGLGLVFWQLWLLALGLV 118 Query 120 FILASAAGLVFEYYVGPEK 138 ++ + GL+FEYY G + Sbjct 119 AVVMAVCGLLFEYYSGTRR 137 >gi|159039071|ref|YP_001538324.1| cytochrome-c oxidase [Salinispora arenicola CNS-205] gi|157917906|gb|ABV99333.1| Cytochrome-c oxidase [Salinispora arenicola CNS-205] Length=141 Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 64/139 (47%), Positives = 88/139 (64%), Gaps = 3/139 (2%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGG-VEWAGTTALALTGGMALIVATFFRFV 59 M E R+F +A F + LYG T + GG VEW GT AL L+ + L+ FF FV Sbjct 1 MKTEWRIFLIIAGFLLFATALYGGWT--YGDGGQVEWVGTVALLLSFLLCLMCGGFFWFV 58 Query 60 ARRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVA 119 ARR+D RPED AEI+DGAGE+GFFSP S+WP +AL+ ++A +G+ W WL+ G+ Sbjct 59 ARRIDLRPEDRPDAEIADGAGEVGFFSPGSYWPFGIALASTIAGLGLVFWQLWLLGVGLV 118 Query 120 FILASAAGLVFEYYVGPEK 138 ++ + GL+FEYY G + Sbjct 119 AVILTTCGLLFEYYSGTRR 137 >gi|291301593|ref|YP_003512871.1| hypothetical protein Snas_4127 [Stackebrandtia nassauensis DSM 44728] gi|290570813|gb|ADD43778.1| hypothetical protein Snas_4127 [Stackebrandtia nassauensis DSM 44728] Length=142 Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/138 (45%), Positives = 84/138 (61%), Gaps = 1/138 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M E+ LF + F + A +YG T + G +E+ G AL L G + + FF FVA Sbjct 1 MKTESHLFGIITFFLYLFAAVYGWWT-WYDGGQIEFIGFVALILAGTLCFMCWGFFAFVA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RRLD RPED EI++ AGE+GFFSP S+WP +A S ++A +G+ W WLIA G+ Sbjct 60 RRLDPRPEDRPDGEIAEAAGEVGFFSPGSYWPFGIAASATIAGLGLVFWFWWLIAVGIIA 119 Query 121 ILASAAGLVFEYYVGPEK 138 +L ++ GL+FEYY G K Sbjct 120 VLITSCGLLFEYYTGTRK 137 >gi|300784106|ref|YP_003764397.1| integral membrane protein [Amycolatopsis mediterranei U32] gi|299793620|gb|ADJ43995.1| integral membrane protein [Amycolatopsis mediterranei U32] gi|340525520|gb|AEK40725.1| integral membrane protein [Amycolatopsis mediterranei S699] Length=139 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 70/138 (51%), Positives = 95/138 (69%), Gaps = 0/138 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EAR+F VA F V A +Y V T++ AT G E G AL LTGG+A + ++ +FVA Sbjct 1 MKVEARIFFIVAIFAVFMAGVYWVWTALAATHGAEPVGIVALFLTGGLAFLAGSYMQFVA 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED E AEISDGAGELGFFSP S+WPI +A + ++AA+G+A + WL+ + Sbjct 61 RRIEPRPEDREDAEISDGAGELGFFSPGSYWPISMAATAALAALGLAFFHIWLLVIALVA 120 Query 121 ILASAAGLVFEYYVGPEK 138 +L + GLVFEY+ GP Sbjct 121 LLITIGGLVFEYHTGPSH 138 >gi|238060325|ref|ZP_04605034.1| cytochrome c oxidase [Micromonospora sp. ATCC 39149] gi|237882136|gb|EEP70964.1| cytochrome c oxidase [Micromonospora sp. ATCC 39149] Length=142 Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 60/138 (44%), Positives = 84/138 (61%), Gaps = 0/138 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M E R+F +A F +LYG T + G VEW GT L L+ + + FF FV+ Sbjct 1 MKTEWRIFLIIAGFLFGATILYGAWTYGDSGGQVEWVGTVGLLLSFLLCTMCGGFFWFVS 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D RPED EI+DGAGE+GFFSP S+WP +AL+ + A +G+ W WL+ G+ Sbjct 61 RRIDPRPEDRPDGEIADGAGEIGFFSPGSYWPFGLALAAATAGLGLVFWQFWLLGLGLVA 120 Query 121 ILASAAGLVFEYYVGPEK 138 ++ +A GL+FEYY G + Sbjct 121 VVFAACGLLFEYYTGTRR 138 >gi|256375506|ref|YP_003099166.1| cytochrome C oxidase [Actinosynnema mirum DSM 43827] gi|255919809|gb|ACU35320.1| Cytochrome-c oxidase [Actinosynnema mirum DSM 43827] Length=138 Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/136 (53%), Positives = 94/136 (70%), Gaps = 1/136 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +E+R+F+ V F + ++Y T T VE GT ALALTGG+AL+V T+FRF+A Sbjct 1 MKVESRVFDLVTGFSFLMTIVYAYWTWA-DTTHVEPVGTVALALTGGLALLVGTYFRFIA 59 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR++ RPED AEISDGAGELGFFSP S+WP+ +A + +V V +A WL WL+ GV Sbjct 60 RRIEVRPEDNPDAEISDGAGELGFFSPGSYWPVALAAAAAVTGVALAFWLIWLLVIGVVL 119 Query 121 ILASAAGLVFEYYVGP 136 I+ + GLVFEY+ GP Sbjct 120 IVLTVGGLVFEYHTGP 135 >gi|302869022|ref|YP_003837659.1| cytochrome-c oxidase [Micromonospora aurantiaca ATCC 27029] gi|315504507|ref|YP_004083394.1| cytochrome-c oxidase [Micromonospora sp. L5] gi|302571881|gb|ADL48083.1| Cytochrome-c oxidase [Micromonospora aurantiaca ATCC 27029] gi|315411126|gb|ADU09243.1| Cytochrome-c oxidase [Micromonospora sp. L5] Length=142 Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/138 (43%), Positives = 86/138 (63%), Gaps = 0/138 (0%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M E ++F +A F + +LYG T + G VEW GT AL L+ + + FF FV+ Sbjct 1 MKTEWKIFLTIATFLLGATILYGAWTYADSGGHVEWIGTVALLLSFLLCAMCGGFFWFVS 60 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVAF 120 RR+D RPED EI+DGAGE+GFFSP S+WP +AL+ ++A +G+ W WL+ G+ Sbjct 61 RRIDLRPEDRPDGEIADGAGEVGFFSPGSYWPFGLALAAAIAGLGLVFWQFWLLGLGLVA 120 Query 121 ILASAAGLVFEYYVGPEK 138 ++ + GL+FEYY G + Sbjct 121 VVLATCGLLFEYYSGTRR 138 >gi|271964185|ref|YP_003338381.1| hypothetical protein Sros_2672 [Streptosporangium roseum DSM 43021] gi|270507360|gb|ACZ85638.1| hypothetical protein Sros_2672 [Streptosporangium roseum DSM 43021] Length=131 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 59/140 (43%), Positives = 81/140 (58%), Gaps = 10/140 (7%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M ++ LF FF V+Y + E GTTA+A++ G A ++ + + A Sbjct 1 MKVQGWLFILCGIFFAAVDVVYWFWSR-------EPVGTTAMAISVGFAFMIGYYLMYTA 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIAL-WLPWLIAAGVA 119 RR+ +PED + EISDGAGELGFFSPHSWWP+ V L+ S+ AVG+ + W WL GV Sbjct 54 RRIGEQPEDNKQGEISDGAGELGFFSPHSWWPLFVCLAVSLTAVGLVIGW--WLFLIGVF 111 Query 120 FILASAAGLVFEYYVGPEKH 139 ++ + G VFEYY G H Sbjct 112 AVIMTMIGFVFEYYRGHFSH 131 >gi|258653418|ref|YP_003202574.1| hypothetical protein Namu_3254 [Nakamurella multipartita DSM 44233] gi|258556643|gb|ACV79585.1| hypothetical protein Namu_3254 [Nakamurella multipartita DSM 44233] Length=134 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 61/140 (44%), Positives = 84/140 (60%), Gaps = 7/140 (5%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +E LF + FF + A++YGVL E G TAL L+ G+ LI+ TF FV+ Sbjct 1 MRVETWLFIGLTGFFALAAIVYGVLAPH------EVVGITALVLSTGLTLIIGTFLLFVS 54 Query 61 RRLD-SRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIALWLPWLIAAGVA 119 RRL+ +RPED + AEI+DGAG+LGFFSP S++P +A ++ AV A L WL+ Sbjct 55 RRLEGARPEDNDDAEIADGAGDLGFFSPGSYYPFFLASVIALFAVAAAYLLVWLMVIAAG 114 Query 120 FILASAAGLVFEYYVGPEKH 139 +L GLV+EY+ P H Sbjct 115 MLLWVVCGLVYEYHRRPVSH 134 >gi|72161421|ref|YP_289078.1| integral membrane protein [Thermobifida fusca YX] gi|71915153|gb|AAZ55055.1| possible conserved integral membrane protein [Thermobifida fusca YX] Length=141 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 64/144 (45%), Positives = 87/144 (61%), Gaps = 8/144 (5%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M ++A LF V++FF AV+Y L S + TG VEW GT LA+ G +V + A Sbjct 1 MRVQALLFMGVSSFFGAVAVIYA-LGSWYLTGQVEWTGTVTLAIAIGFGWMVGFWLLMAA 59 Query 61 RRLDSR----PEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIAL-WLPWLIA 115 RR + PE+ AEI +GAGE GFFSPHSWWP+ VA++ + AVG+A+ W W+ A Sbjct 60 RRSEHYHGLPPEERLDAEIEEGAGEYGFFSPHSWWPLFVAMAVAFTAVGVAVGW--WMTA 117 Query 116 AGVAFILASAAGLVFEYYVGPEKH 139 G+ I+ + G VFEYY G +H Sbjct 118 IGLLAIMLTVIGWVFEYYRGEFQH 141 >gi|297161220|gb|ADI10932.1| hypothetical protein SBI_07812 [Streptomyces bingchenggensis BCW-1] Length=132 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 57/140 (41%), Positives = 87/140 (63%), Gaps = 10/140 (7%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M ++ RLF ++A F +V A++YGV + E AGTTAL L G+++++ + F A Sbjct 1 MKVQGRLFIWLAVFILVMAIVYGVWSK-------EPAGTTALFLAFGLSVMIGYYLAFTA 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIAL-WLPWLIAAGVA 119 RR+D +D + A+++D AGELGFFSPHSW P+ +A+ G++A +G+ W WL+ Sbjct 54 RRVDVGAQDNKDADVADDAGELGFFSPHSWQPLSLAIGGALAFMGVIFGW--WLLYFSAP 111 Query 120 FILASAAGLVFEYYVGPEKH 139 IL G VFEYY G ++ Sbjct 112 IILVGLFGWVFEYYRGENQN 131 >gi|269127286|ref|YP_003300656.1| hypothetical protein Tcur_3076 [Thermomonospora curvata DSM 43183] gi|268312244|gb|ACY98618.1| hypothetical protein Tcur_3076 [Thermomonospora curvata DSM 43183] Length=136 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 60/145 (42%), Positives = 83/145 (58%), Gaps = 15/145 (10%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M ++A +F A FF++T ++Y + + EW GTTALAL+ G+A ++ + F Sbjct 1 MRVQAFMFYGCAIFFLITDIVYWLWSK-------EWTGTTALALSVGLAGLIGFYIHFTI 53 Query 61 RRLDSRP-----EDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIAL-WLPWLI 114 RRL+ ED EI AGE+GFFSPHSWWP+ VA S + +G+ W WL+ Sbjct 54 RRLEKANNGPLYEDDPDGEIVQAAGEVGFFSPHSWWPLFVAASAACITLGLVFGW--WLV 111 Query 115 AAGVAFILASAAGLVFEYYVGPEKH 139 G+A L S GLVFEYY G +H Sbjct 112 VFGIAATLLSCIGLVFEYYRGHFQH 136 >gi|284030715|ref|YP_003380646.1| hypothetical protein Kfla_2782 [Kribbella flavida DSM 17836] gi|283810008|gb|ADB31847.1| hypothetical protein Kfla_2782 [Kribbella flavida DSM 17836] Length=131 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 57/140 (41%), Positives = 83/140 (60%), Gaps = 10/140 (7%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M +EA +F + F ++ +Y +++ + GTTAL +T +AL+V + A Sbjct 1 MKVEAWIFGILTLFALIVTPIYWLMSE-------DPTGTTALVMTFFLALLVTFYLAITA 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIAL-WLPWLIAAGVA 119 RR+D RPED + AEI++GAGELGFF PHSWWP+ A + SVA +G+ W WL G A Sbjct 54 RRMDPRPEDRKEAEIAEGAGELGFFPPHSWWPLWCAATLSVAVLGLVFGW--WLFIIGSA 111 Query 120 FILASAAGLVFEYYVGPEKH 139 + + +G +FEYY G H Sbjct 112 LGIIALSGFIFEYYRGDHAH 131 >gi|329941017|ref|ZP_08290297.1| hypothetical protein SGM_5789 [Streptomyces griseoaurantiacus M045] gi|329300311|gb|EGG44209.1| hypothetical protein SGM_5789 [Streptomyces griseoaurantiacus M045] Length=132 Score = 100 bits (250), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/139 (41%), Positives = 87/139 (63%), Gaps = 10/139 (7%) Query 1 MHIEARLFEFVAAFFVVTAVLYGVLTSMFATGGVEWAGTTALALTGGMALIVATFFRFVA 60 M ++ ++F ++AAF V A++YG+ + E AGTTAL L G++L++ + F A Sbjct 1 MKVQGKMFLWLAAFLVAMAIIYGLWSK-------EPAGTTALFLAFGLSLMIGYYLAFTA 53 Query 61 RRLDSRPEDYEGAEISDGAGELGFFSPHSWWPIMVALSGSVAAVGIAL-WLPWLIAAGVA 119 RR+D+ +D + A+++D AGELGFFSPHSW P+ +A G++A +G+ W WL+ + Sbjct 54 RRVDAGAQDNKDADVADDAGELGFFSPHSWQPLSLAFGGALAFMGVVFGW--WLLFFSLP 111 Query 120 FILASAAGLVFEYYVGPEK 138 IL G VFEYY G + Sbjct 112 IILIGLWGWVFEYYRGENR 130 Lambda K H 0.327 0.139 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 131443546824 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40