BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2200c Length=363 Score E Sequences producing significant alignments: (Bits) Value gi|2384663|gb|AAB69853.1| cytochrome C oxidase subunit II [Mycob... 749 0.0 gi|15609337|ref|NP_216716.1| transmembrane cytochrome C oxidase ... 749 0.0 gi|167969407|ref|ZP_02551684.1| transmembrane cytochrome C oxida... 679 0.0 gi|289762362|ref|ZP_06521740.1| heme/copper-type cytochrome/quin... 671 0.0 gi|289570316|ref|ZP_06450543.1| transmembrane cytochrome C oxida... 654 0.0 gi|294993585|ref|ZP_06799276.1| cytochrome c oxidase subunit II ... 646 0.0 gi|15827398|ref|NP_301661.1| cytochrome C oxidase chain II [Myco... 620 8e-176 gi|183983235|ref|YP_001851526.1| transmembrane cytochrome C oxid... 611 6e-173 gi|296166072|ref|ZP_06848518.1| cytochrome c oxidase, subunit II... 608 4e-172 gi|118618842|ref|YP_907174.1| transmembrane cytochrome C oxidase... 606 2e-171 gi|240168261|ref|ZP_04746920.1| transmembrane cytochrome C oxida... 602 4e-170 gi|41408038|ref|NP_960874.1| CtaC [Mycobacterium avium subsp. pa... 591 7e-167 gi|118467069|ref|YP_881495.1| cytochrome C oxidase, subunit 2 [M... 585 6e-165 gi|254822890|ref|ZP_05227891.1| cytochrome c oxidase, subunit 2 ... 573 2e-161 gi|342859911|ref|ZP_08716564.1| cytochrome c oxidase, subunit II... 561 5e-158 gi|118472731|ref|YP_888545.1| cytochrome C oxidase subunit 2 [My... 550 2e-154 gi|145223536|ref|YP_001134214.1| cytochrome c oxidase subunit II... 532 3e-149 gi|120404535|ref|YP_954364.1| cytochrome c oxidase subunit II [M... 531 8e-149 gi|333990342|ref|YP_004522956.1| transmembrane cytochrome C oxid... 530 2e-148 gi|108800264|ref|YP_640461.1| cytochrome c oxidase subunit II [M... 513 2e-143 gi|169629048|ref|YP_001702697.1| cytochrome c oxidase subunit 2 ... 496 3e-138 gi|229490357|ref|ZP_04384198.1| cytochrome c oxidase subunit 2 [... 411 1e-112 gi|54023676|ref|YP_117918.1| putative cytochrome c oxidase subun... 410 1e-112 gi|226307089|ref|YP_002767049.1| cytochrome c oxidase subunit II... 404 1e-110 gi|111018150|ref|YP_701122.1| cytochrome c oxidase subunit II [R... 397 2e-108 gi|226360279|ref|YP_002778057.1| cytochrome c oxidase subunit II... 396 3e-108 gi|312140192|ref|YP_004007528.1| cytochrome c oxidase subunit ii... 394 1e-107 gi|333918945|ref|YP_004492526.1| cytochrome c oxidase subunit II... 382 6e-104 gi|343924163|ref|ZP_08763726.1| cytochrome c oxidase subunit II ... 379 6e-103 gi|262202953|ref|YP_003274161.1| cytochrome C oxidase subunit II... 375 5e-102 gi|326382511|ref|ZP_08204202.1| cytochrome c oxidase subunit II ... 361 8e-98 gi|325676926|ref|ZP_08156598.1| cytochrome c oxidase, subunit II... 359 3e-97 gi|296139256|ref|YP_003646499.1| cytochrome C oxidase subunit II... 357 1e-96 gi|319951011|ref|ZP_08024878.1| cytochrome c oxidase subunit II ... 338 8e-91 gi|227488499|ref|ZP_03918815.1| cytochrome C oxidase precursor [... 331 1e-88 gi|237785307|ref|YP_002906012.1| cytochrome c oxidase subunit II... 327 2e-87 gi|311741497|ref|ZP_07715321.1| cytochrome c oxidase, subunit II... 327 2e-87 gi|255325374|ref|ZP_05366480.1| putative cytochrome C oxidase, s... 327 2e-87 gi|172040919|ref|YP_001800633.1| cytochrome c oxidase subunit II... 327 2e-87 gi|306836523|ref|ZP_07469494.1| cytochrome c oxidase, subunit II... 325 5e-87 gi|300858845|ref|YP_003783828.1| cytochrome C oxidase subunit II... 325 5e-87 gi|227503248|ref|ZP_03933297.1| cytochrome C oxidase precursor [... 325 6e-87 gi|68535791|ref|YP_250496.1| cytochrome c oxidase subunit II [Co... 324 1e-86 gi|337291152|ref|YP_004630173.1| cytochrome C oxidase subunit II... 324 1e-86 gi|296393476|ref|YP_003658360.1| cytochrome C oxidase subunit II... 320 3e-85 gi|38234204|ref|NP_939971.1| putative cytochrome C oxidase [Cory... 319 6e-85 gi|227504661|ref|ZP_03934710.1| cytochrome C oxidase precursor [... 318 1e-84 gi|260578121|ref|ZP_05846042.1| cytochrome c oxidase, subunit II... 315 8e-84 gi|227548882|ref|ZP_03978931.1| cytochrome-c oxidase [Corynebact... 315 1e-83 gi|334563270|ref|ZP_08516261.1| cytochrome c oxidase subunit II ... 314 1e-83 >gi|2384663|gb|AAB69853.1| cytochrome C oxidase subunit II [Mycobacterium tuberculosis H37Rv] Length=370 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/363 (99%), Positives = 362/363 (99%), Gaps = 0/363 (0%) Query 1 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG 60 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG Sbjct 8 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG 67 Query 61 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL 120 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL Sbjct 68 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL 127 Query 121 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG 180 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG Sbjct 128 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG 187 Query 181 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG 240 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG Sbjct 188 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG 247 Query 241 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG 300 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG Sbjct 248 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG 307 Query 301 TYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 TYHSMMNFEVRVVTPNDFKAYLQQRIDG TNAEALRAINQPPLAVTTHPFDTRRGELAPQ Sbjct 308 TYHSMMNFEVRVVTPNDFKAYLQQRIDGNTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 367 Query 361 PVG 363 PVG Sbjct 368 PVG 370 >gi|15609337|ref|NP_216716.1| transmembrane cytochrome C oxidase subunit II CtaC [Mycobacterium tuberculosis H37Rv] gi|15841691|ref|NP_336728.1| cytochrome c oxidase, subunit II [Mycobacterium tuberculosis CDC1551] gi|31793379|ref|NP_855872.1| transmembrane cytochrome C oxidase subunit II CtaC [Mycobacterium bovis AF2122/97] 48 more sequence titles Length=363 Score = 749 bits (1934), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/363 (99%), Positives = 363/363 (100%), Gaps = 0/363 (0%) Query 1 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG 60 +TPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG Sbjct 1 MTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG 60 Query 61 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL 120 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL Sbjct 61 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL 120 Query 121 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG 180 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG Sbjct 121 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG 180 Query 181 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG 240 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG Sbjct 181 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG 240 Query 241 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG 300 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG Sbjct 241 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG 300 Query 301 TYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 TYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ Sbjct 301 TYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 Query 361 PVG 363 PVG Sbjct 361 PVG 363 >gi|167969407|ref|ZP_02551684.1| transmembrane cytochrome C oxidase subunit II ctaC [Mycobacterium tuberculosis H37Ra] gi|308232066|ref|ZP_07414789.2| transmembrane cytochrome C oxidase subunit II ctaC [Mycobacterium tuberculosis SUMu001] gi|308369653|ref|ZP_07418566.2| transmembrane cytochrome C oxidase subunit II ctaC [Mycobacterium tuberculosis SUMu002] 24 more sequence titles Length=328 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/328 (100%), Positives = 328/328 (100%), Gaps = 0/328 (0%) Query 36 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV 95 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV Sbjct 1 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV 60 Query 96 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI 155 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI Sbjct 61 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI 120 Query 156 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR 215 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR Sbjct 121 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR 180 Query 216 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN 275 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN Sbjct 181 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN 240 Query 276 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL 335 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL Sbjct 241 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL 300 Query 336 RAINQPPLAVTTHPFDTRRGELAPQPVG 363 RAINQPPLAVTTHPFDTRRGELAPQPVG Sbjct 301 RAINQPPLAVTTHPFDTRRGELAPQPVG 328 >gi|289762362|ref|ZP_06521740.1| heme/copper-type cytochrome/quinol oxidase [Mycobacterium tuberculosis GM 1503] gi|289709868|gb|EFD73884.1| heme/copper-type cytochrome/quinol oxidase [Mycobacterium tuberculosis GM 1503] Length=324 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 323/324 (99%), Positives = 324/324 (100%), Gaps = 0/324 (0%) Query 40 LAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRK 99 +AVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRK Sbjct 1 MAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRK 60 Query 100 KNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQ 159 KNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQ Sbjct 61 KNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQ 120 Query 160 WNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLN 219 WNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLN Sbjct 121 WNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLN 180 Query 220 FDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNV 279 FDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNV Sbjct 181 FDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNV 240 Query 280 FQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAIN 339 FQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAIN Sbjct 241 FQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAIN 300 Query 340 QPPLAVTTHPFDTRRGELAPQPVG 363 QPPLAVTTHPFDTRRGELAPQPVG Sbjct 301 QPPLAVTTHPFDTRRGELAPQPVG 324 >gi|289570316|ref|ZP_06450543.1| transmembrane cytochrome C oxidase subunit II ctaC [Mycobacterium tuberculosis T17] gi|289544070|gb|EFD47718.1| transmembrane cytochrome C oxidase subunit II ctaC [Mycobacterium tuberculosis T17] Length=342 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 315/316 (99%), Positives = 315/316 (99%), Gaps = 0/316 (0%) Query 1 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG 60 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG Sbjct 16 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEG 75 Query 61 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL 120 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL Sbjct 76 ITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVL 135 Query 121 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG 180 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG Sbjct 136 TVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDG 195 Query 181 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG 240 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG Sbjct 196 ADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSG 255 Query 241 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG 300 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG Sbjct 256 KRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCG 315 Query 301 TYHSMMNFEVRVVTPN 316 TYHSMMNFEVRVVTP Sbjct 316 TYHSMMNFEVRVVTPT 331 >gi|294993585|ref|ZP_06799276.1| cytochrome c oxidase subunit II [Mycobacterium tuberculosis 210] Length=315 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 313/314 (99%), Positives = 313/314 (99%), Gaps = 0/314 (0%) Query 36 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV 95 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV Sbjct 1 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV 60 Query 96 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI 155 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI Sbjct 61 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI 120 Query 156 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR 215 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR Sbjct 121 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR 180 Query 216 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN 275 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN Sbjct 181 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN 240 Query 276 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL 335 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL Sbjct 241 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL 300 Query 336 RAINQPPLAVTTHP 349 RAINQPPLAVTT P Sbjct 301 RAINQPPLAVTTPP 314 >gi|15827398|ref|NP_301661.1| cytochrome C oxidase chain II [Mycobacterium leprae TN] gi|221229875|ref|YP_002503291.1| putative cytochrome C oxidase chain II [Mycobacterium leprae Br4923] gi|62900046|sp|Q9CCF1.1|COX2_MYCLE RecName: Full=Probable cytochrome c oxidase subunit 2; AltName: Full=Cytochrome aa3 subunit 2; AltName: Full=Cytochrome c oxidase polypeptide II; Flags: Precursor gi|13092948|emb|CAC31256.1| putative cytochrome C oxidase chain II [Mycobacterium leprae] gi|219932982|emb|CAR70970.1| putative cytochrome C oxidase chain II [Mycobacterium leprae Br4923] Length=353 Score = 620 bits (1600), Expect = 8e-176, Method: Compositional matrix adjust. Identities = 290/340 (86%), Positives = 314/340 (93%), Gaps = 0/340 (0%) Query 18 QRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVI 77 QR G +R LR L LA LG L VT+SGCSWS+AL IGWPEGITPEAHLNR+LWIGAV+ Sbjct 10 QRVGQGLSRRLRPLVLAVTLGVLVVTLSGCSWSDALAIGWPEGITPEAHLNRQLWIGAVV 69 Query 78 ASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVV 137 ASL VGVIVWGLIFWS +FHRKK TDTELPRQFGYNMPLELVLTV PFLIIS+LFYFTV+ Sbjct 70 ASLVVGVIVWGLIFWSTIFHRKKTTDTELPRQFGYNMPLELVLTVTPFLIISMLFYFTVI 129 Query 138 VQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKD 197 VQ+KML +AKDPEVVID+T+FQWNWKFGYQRV+FKDGTLTYDG DP RK+AMVSKPEGKD Sbjct 130 VQDKMLYLAKDPEVVIDVTAFQWNWKFGYQRVDFKDGTLTYDGVDPARKKAMVSKPEGKD 189 Query 198 KYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFW 257 +GEELVG VRGLNTEDR YLNFDKVETLGT+TEIPVLVLP+GKRIEFQ+ SADV+H+FW Sbjct 190 SHGEELVGAVRGLNTEDRAYLNFDKVETLGTTTEIPVLVLPAGKRIEFQLNSADVVHSFW 249 Query 258 VPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPND 317 VP+FLFKRDVMPNPVANNSVNVFQ+EEITKTGAFVGHCAEMCGTYHSMMNFEVRVV PND Sbjct 250 VPKFLFKRDVMPNPVANNSVNVFQVEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVAPND 309 Query 318 FKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGEL 357 FKAYLQQRIDGKTNAEAL+ I QPPLAVTTHPFDTRRG+L Sbjct 310 FKAYLQQRIDGKTNAEALQVIAQPPLAVTTHPFDTRRGQL 349 >gi|183983235|ref|YP_001851526.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium marinum M] gi|183176561|gb|ACC41671.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium marinum M] Length=367 Score = 611 bits (1575), Expect = 6e-173, Method: Compositional matrix adjust. Identities = 294/367 (81%), Positives = 320/367 (88%), Gaps = 4/367 (1%) Query 1 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALA----VTVSGCSWSEALGIG 56 +TPR PGR Q LS C Q S G + R++A A L VT+SGCSWSEAL +G Sbjct 1 MTPREPGRSQSLSPCNSQSNSVGRSGAARRIARLAGLAGALGLLAVTLSGCSWSEALALG 60 Query 57 WPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPL 116 WPEGITPEAH+NRELWIGAVIASL VGVIVWGLIFWSA FHRKK TDT+ PRQFGYNMPL Sbjct 61 WPEGITPEAHVNRELWIGAVIASLVVGVIVWGLIFWSATFHRKKKTDTDFPRQFGYNMPL 120 Query 117 ELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTL 176 ELVLTV PFLIISVLFYFTVVVQEKML +A DPEVV+D+T+FQWNWKFGYQ+V+F D TL Sbjct 121 ELVLTVTPFLIISVLFYFTVVVQEKMLHLADDPEVVVDVTAFQWNWKFGYQKVDFHDHTL 180 Query 177 TYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLV 236 TYDGAD RKRAM SKPEGKD++GEELVGPV G NTEDRTYLNFDKVETLGT++EIPVLV Sbjct 181 TYDGADEARKRAMESKPEGKDEHGEELVGPVAGRNTEDRTYLNFDKVETLGTTSEIPVLV 240 Query 237 LPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCA 296 LP+GKRIEFQ+ SADVIHAFWVPEFLFKRDVMPNP ANNSVN FQ+E+ITKTGAFVGHCA Sbjct 241 LPAGKRIEFQLNSADVIHAFWVPEFLFKRDVMPNPAANNSVNRFQVEQITKTGAFVGHCA 300 Query 297 EMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGE 356 EMCGTYHSMMNFEVRVV NDFKAYLQQRI GKTNAEAL+AINQPPLA+TTHPF+TRRG+ Sbjct 301 EMCGTYHSMMNFEVRVVAANDFKAYLQQRIAGKTNAEALQAINQPPLAITTHPFETRRGQ 360 Query 357 LAPQPVG 363 AP PVG Sbjct 361 QAPMPVG 367 >gi|296166072|ref|ZP_06848518.1| cytochrome c oxidase, subunit II [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898567|gb|EFG78127.1| cytochrome c oxidase, subunit II [Mycobacterium parascrofulaceum ATCC BAA-614] Length=370 Score = 608 bits (1568), Expect = 4e-172, Method: Compositional matrix adjust. Identities = 290/366 (80%), Positives = 323/366 (89%), Gaps = 8/366 (2%) Query 1 VTPRGPGRLQRLSQCRPQ-----RGSG---GPARGLRQLALAAMLGALAVTVSGCSWSEA 52 +TPR R QRLSQ R Q R G G +R LR LALAA G LA+T+SGCSW + Sbjct 1 MTPREQVRSQRLSQGRFQGRFGSRSGGVRHGMSRRLRPLALAATFGVLALTLSGCSWEDV 60 Query 53 LGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGY 112 LG+GWP+GITP+AH NRELW+GA IASL VGVIVWGLIFW++ FHRKK TDTELPRQFGY Sbjct 61 LGLGWPKGITPQAHYNRELWLGATIASLVVGVIVWGLIFWASAFHRKKATDTELPRQFGY 120 Query 113 NMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFK 172 NMPLELVLTV PFLIISVLFYFTVVVQEKML + KDPEVV+D+T+FQWNWKFGYQRV+FK Sbjct 121 NMPLELVLTVTPFLIISVLFYFTVVVQEKMLHLDKDPEVVVDVTAFQWNWKFGYQRVDFK 180 Query 173 DGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEI 232 DGTLTYDGADP RK+AMVSKPEGKD +GEELVGPVRGLNT DRTYLNFDKVETLGTS EI Sbjct 181 DGTLTYDGADPARKKAMVSKPEGKDAHGEELVGPVRGLNTSDRTYLNFDKVETLGTSDEI 240 Query 233 PVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFV 292 PVLVLP+GKRI+FQ+ASADV+H FWVPEFLFKRDV+PN ANNSVNVFQ+++I++TGAFV Sbjct 241 PVLVLPTGKRIQFQLASADVVHTFWVPEFLFKRDVIPNAEANNSVNVFQVDDISRTGAFV 300 Query 293 GHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDT 352 GHCAE CGTYHSMMNFEVRVV PNDFKAYLQQRIDGK+NA+AL+AI Q PLAV+THPFDT Sbjct 301 GHCAEFCGTYHSMMNFEVRVVPPNDFKAYLQQRIDGKSNAQALQAIGQAPLAVSTHPFDT 360 Query 353 RRGELA 358 RRG+LA Sbjct 361 RRGQLA 366 >gi|118618842|ref|YP_907174.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium ulcerans Agy99] gi|118570952|gb|ABL05703.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium ulcerans Agy99] Length=367 Score = 606 bits (1563), Expect = 2e-171, Method: Compositional matrix adjust. Identities = 292/367 (80%), Positives = 319/367 (87%), Gaps = 4/367 (1%) Query 1 VTPRGPGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALA----VTVSGCSWSEALGIG 56 +TPR PGR Q LS C Q S G + R++A A L VT+SGCSWSEAL +G Sbjct 1 MTPREPGRSQSLSPCNSQSNSVGRSGAARRIARLAGLAGALGLLAVTLSGCSWSEALALG 60 Query 57 WPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPL 116 WPEGITPEAH+NRELWIGAVIASL VGVIVWGLIFWSA FHRKK TDT+ PRQFGYNMPL Sbjct 61 WPEGITPEAHVNRELWIGAVIASLVVGVIVWGLIFWSATFHRKKKTDTDFPRQFGYNMPL 120 Query 117 ELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTL 176 ELVLTV PFLIISVLFYFTVVVQE+ML +A DPEVV+D+T+FQWNWKFGYQ+V+F D TL Sbjct 121 ELVLTVTPFLIISVLFYFTVVVQERMLHLADDPEVVVDVTAFQWNWKFGYQKVDFHDHTL 180 Query 177 TYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLV 236 TYDGA RKRAM SKPEGKD++GEELVGPV G NTEDRTYLNFDKVETLGT++EIPVLV Sbjct 181 TYDGAVEARKRAMESKPEGKDEHGEELVGPVAGRNTEDRTYLNFDKVETLGTTSEIPVLV 240 Query 237 LPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCA 296 LP+GKRIEFQ+ SADVIHAFWVPEFLFKRDVMPNP ANNSVN FQ+E+ITKTGAFVGHCA Sbjct 241 LPAGKRIEFQLNSADVIHAFWVPEFLFKRDVMPNPAANNSVNRFQVEQITKTGAFVGHCA 300 Query 297 EMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGE 356 EMCGTYHSMMNFEVRVV NDFKAYLQQRI GKTNAEAL+AINQPPLA+TTHPF+TRRG+ Sbjct 301 EMCGTYHSMMNFEVRVVAANDFKAYLQQRIAGKTNAEALQAINQPPLAITTHPFETRRGQ 360 Query 357 LAPQPVG 363 AP PVG Sbjct 361 QAPMPVG 367 >gi|240168261|ref|ZP_04746920.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium kansasii ATCC 12478] Length=369 Score = 602 bits (1551), Expect = 4e-170, Method: Compositional matrix adjust. Identities = 292/366 (80%), Positives = 318/366 (87%), Gaps = 7/366 (1%) Query 1 VTPRGPGRLQRLSQCRPQRGSGGPARG-------LRQLALAAMLGALAVTVSGCSWSEAL 53 +T R PGR Q LSQ + S G RG LR AL LG LAVT+SGCSWSEAL Sbjct 1 MTLREPGRSQCLSQGNSEIRSAGRRRGARGLAPRLRLAALTGALGVLAVTLSGCSWSEAL 60 Query 54 GIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYN 113 G+GWPEG+TPEAH NRELW+GAVIASL VGVIVWGLIFW+AVFHRKK +D + PRQFGYN Sbjct 61 GLGWPEGVTPEAHANRELWVGAVIASLVVGVIVWGLIFWTAVFHRKKRSDADFPRQFGYN 120 Query 114 MPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKD 173 MPLELVLTV PFLIISVLFYFTVVVQEKML KDPEVVID+T+FQWNWKFGYQRV+F D Sbjct 121 MPLELVLTVTPFLIISVLFYFTVVVQEKMLHTTKDPEVVIDVTAFQWNWKFGYQRVDFHD 180 Query 174 GTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIP 233 TLTYDGAD RK A+ SKPEGKD +GEELVGPV G NTEDR+YLNFDK+ETLGT+ EIP Sbjct 181 HTLTYDGADEARKHAVESKPEGKDAHGEELVGPVAGRNTEDRSYLNFDKIETLGTTNEIP 240 Query 234 VLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVG 293 VLVLP+GKRIEF++ SADV+H+FWVPEFLFKRDVMPNP ANNSVNVFQIE+ITKTGAFVG Sbjct 241 VLVLPAGKRIEFELNSADVVHSFWVPEFLFKRDVMPNPAANNSVNVFQIEQITKTGAFVG 300 Query 294 HCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTR 353 HCAEMCGTYH+MMNFEVRVV PNDFKAYLQQRIDGKTNAEAL+AINQPPLAVTTHPFD R Sbjct 301 HCAEMCGTYHAMMNFEVRVVAPNDFKAYLQQRIDGKTNAEALQAINQPPLAVTTHPFDAR 360 Query 354 RGELAP 359 RG+LAP Sbjct 361 RGQLAP 366 >gi|41408038|ref|NP_960874.1| CtaC [Mycobacterium avium subsp. paratuberculosis K-10] gi|62899979|sp|Q73YL5.1|COX2_MYCPA RecName: Full=Probable cytochrome c oxidase subunit 2; AltName: Full=Cytochrome aa3 subunit 2; AltName: Full=Cytochrome c oxidase polypeptide II; Flags: Precursor gi|41396393|gb|AAS04257.1| CtaC [Mycobacterium avium subsp. paratuberculosis K-10] gi|336461924|gb|EGO40777.1| heme/copper-type cytochrome C oxidase, subunit 2 [Mycobacterium avium subsp. paratuberculosis S397] Length=360 Score = 591 bits (1523), Expect = 7e-167, Method: Compositional matrix adjust. Identities = 284/360 (79%), Positives = 317/360 (89%), Gaps = 5/360 (1%) Query 1 VTPRGPGRLQRLSQCR-PQRGSGGPARGLRQLALAAMLGALAVTVSGCS-WSEALGIGWP 58 +TPR R Q LSQ R P R R LR LALA LG LA+ +SGCS W++AL +GWP Sbjct 1 MTPREQDRSQPLSQGRFPGRVG---RRVLRPLALAVTLGVLAIVLSGCSSWADALALGWP 57 Query 59 EGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLEL 118 +GITP+AHLNRELWIGAVIASL VG IV+GLIFW++ FHRKK TDTELPRQFGYNMPLEL Sbjct 58 KGITPQAHLNRELWIGAVIASLVVGAIVYGLIFWASAFHRKKATDTELPRQFGYNMPLEL 117 Query 119 VLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTY 178 VLTV PFLIISVLFYFTVVVQEKML IAKDPEVV+D+T+FQWNWKFGYQ+VNFKDGTLTY Sbjct 118 VLTVTPFLIISVLFYFTVVVQEKMLHIAKDPEVVVDVTAFQWNWKFGYQKVNFKDGTLTY 177 Query 179 DGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLP 238 DGADPERK+AMVSKPEGKD +GEE VG VRGLNT DRTYLNFDKVETLG+S EIPVLVLP Sbjct 178 DGADPERKKAMVSKPEGKDAHGEERVGAVRGLNTSDRTYLNFDKVETLGSSDEIPVLVLP 237 Query 239 SGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEM 298 +GKRIEF +ASADV+H FWVPEFLFKRDV+PN ANNS++VFQ+EEI GAFVGHCAE Sbjct 238 TGKRIEFDLASADVVHTFWVPEFLFKRDVIPNAEANNSIHVFQVEEINSPGAFVGHCAEF 297 Query 299 CGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGELA 358 CGTYHSMMNFEVRVV+PNDFKAYLQQR+DGK+NAEAL+AI Q P+AVTTHPFD++RG+LA Sbjct 298 CGTYHSMMNFEVRVVSPNDFKAYLQQRMDGKSNAEALQAIGQSPVAVTTHPFDSKRGQLA 357 >gi|118467069|ref|YP_881495.1| cytochrome C oxidase, subunit 2 [Mycobacterium avium 104] gi|254774963|ref|ZP_05216479.1| CtaC [Mycobacterium avium subsp. avium ATCC 25291] gi|118168356|gb|ABK69253.1| cytochrome c oxidase, subunit 2 [Mycobacterium avium 104] Length=336 Score = 585 bits (1507), Expect = 6e-165, Method: Compositional matrix adjust. Identities = 272/332 (82%), Positives = 304/332 (92%), Gaps = 1/332 (0%) Query 28 LRQLALAAMLGALAVTVSGCS-WSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIV 86 LR LALA LG LA+ +SGCS W++AL +GWP+GITP+AHLNRELWIGAVIASL VG IV Sbjct 2 LRPLALAVTLGVLAIVLSGCSSWADALALGWPKGITPQAHLNRELWIGAVIASLVVGAIV 61 Query 87 WGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIA 146 +GLIFW++ FHRKK TDTELPRQFGYNMPLELVLTV PFLIISVLFYFTVVVQEKML IA Sbjct 62 YGLIFWASAFHRKKATDTELPRQFGYNMPLELVLTVTPFLIISVLFYFTVVVQEKMLHIA 121 Query 147 KDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGP 206 KDPEVV+D+T+FQWNWKFGYQ+VNFKDGTLTYDGADPERK+AMVSKPEGKD +GEE VG Sbjct 122 KDPEVVVDVTAFQWNWKFGYQKVNFKDGTLTYDGADPERKKAMVSKPEGKDAHGEERVGA 181 Query 207 VRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRD 266 VRGLNT DRTYLNFDKVETLG+S EIPVLVLP+GKRIEF +ASADV+H FWVPEFLFKRD Sbjct 182 VRGLNTSDRTYLNFDKVETLGSSDEIPVLVLPTGKRIEFDLASADVVHTFWVPEFLFKRD 241 Query 267 VMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRI 326 V+PN ANNS++VFQ+EEI GAFVGHCAE CGTYHSMMNFEVRVV+PNDFKAYLQQR+ Sbjct 242 VIPNAEANNSIHVFQVEEINSPGAFVGHCAEFCGTYHSMMNFEVRVVSPNDFKAYLQQRM 301 Query 327 DGKTNAEALRAINQPPLAVTTHPFDTRRGELA 358 DGK+NAEAL+AI Q P+AVTTHPFD++RG+LA Sbjct 302 DGKSNAEALQAIGQSPVAVTTHPFDSKRGQLA 333 >gi|254822890|ref|ZP_05227891.1| cytochrome c oxidase, subunit 2 [Mycobacterium intracellulare ATCC 13950] Length=326 Score = 573 bits (1476), Expect = 2e-161, Method: Compositional matrix adjust. Identities = 269/323 (84%), Positives = 296/323 (92%), Gaps = 1/323 (0%) Query 37 LGALAVTVSGCS-WSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV 95 LG LA+ +SGCS W++AL +GWP GITP+A LNRELWIGAVIASL VGVIV+GLIFWS+ Sbjct 3 LGVLAMFLSGCSSWADALALGWPRGITPQAQLNRELWIGAVIASLVVGVIVYGLIFWSSA 62 Query 96 FHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDI 155 FHRKK TDTELPRQFGYNMPLEL LTV PFLIISVLFYFTVVVQEKML IAKDPEVVID+ Sbjct 63 FHRKKATDTELPRQFGYNMPLELALTVTPFLIISVLFYFTVVVQEKMLHIAKDPEVVIDV 122 Query 156 TSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDR 215 T+FQWNWKFGYQRV+FKDGTLTYDGAD RK+AMVSKPEGKD++GEELVGPVRGLNT DR Sbjct 123 TAFQWNWKFGYQRVDFKDGTLTYDGADAARKKAMVSKPEGKDEHGEELVGPVRGLNTSDR 182 Query 216 TYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANN 275 TYLN+DKVETLGTS EIPVLVLP+GKRIEF +ASADV+H FWVPEFLFKRDV+PN ANN Sbjct 183 TYLNYDKVETLGTSDEIPVLVLPTGKRIEFDLASADVVHTFWVPEFLFKRDVIPNADANN 242 Query 276 SVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEAL 335 SV+VFQ+EEI GAFVGHCAE CGTYHSMMNFEVRVV+PNDFKAYLQQR+DGK+NA AL Sbjct 243 SVHVFQVEEINTPGAFVGHCAEFCGTYHSMMNFEVRVVSPNDFKAYLQQRMDGKSNAAAL 302 Query 336 RAINQPPLAVTTHPFDTRRGELA 358 +AI QPP AVTTHPFDTRRG+L+ Sbjct 303 QAIGQPPAAVTTHPFDTRRGQLS 325 >gi|342859911|ref|ZP_08716564.1| cytochrome c oxidase, subunit II [Mycobacterium colombiense CECT 3035] gi|342133043|gb|EGT86263.1| cytochrome c oxidase, subunit II [Mycobacterium colombiense CECT 3035] Length=327 Score = 561 bits (1446), Expect = 5e-158, Method: Compositional matrix adjust. Identities = 264/324 (82%), Positives = 292/324 (91%), Gaps = 1/324 (0%) Query 36 MLGALAVTVSGCS-WSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSA 94 MLG LA+ +SGCS W++AL +GWP GITPEAHLNRELWIGAVIASL VG+IV+GLIFW++ Sbjct 1 MLGVLALFLSGCSSWADALALGWPRGITPEAHLNRELWIGAVIASLVVGLIVFGLIFWAS 60 Query 95 VFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVID 154 FHRKK TDT LPRQFGYNMPLEL LTV PFLIISVLFYFTVVVQEKML + K+PEVVID Sbjct 61 AFHRKKATDTVLPRQFGYNMPLELALTVTPFLIISVLFYFTVVVQEKMLHLDKNPEVVID 120 Query 155 ITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTED 214 +T+FQWNWKFGYQ+VNFKDGTLTYDG DP RK+AM+SKPEGKD +GEE VG VRGLNT D Sbjct 121 VTAFQWNWKFGYQKVNFKDGTLTYDGTDPARKKAMLSKPEGKDAHGEERVGAVRGLNTSD 180 Query 215 RTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVAN 274 R YLNFDKVETLG+S EIPVLVLP+GKRIEF +ASADVIH FWVPEFLFKRDV+PN AN Sbjct 181 RQYLNFDKVETLGSSEEIPVLVLPTGKRIEFDLASADVIHTFWVPEFLFKRDVIPNADAN 240 Query 275 NSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEA 334 NSV+VFQ EEI GAFVGHCAE CGTYHSMMNFEVRVV PNDFKAYLQQR+DGK+NAEA Sbjct 241 NSVHVFQTEEIQTPGAFVGHCAEFCGTYHSMMNFEVRVVAPNDFKAYLQQRMDGKSNAEA 300 Query 335 LRAINQPPLAVTTHPFDTRRGELA 358 L+AI QPP+AVTTHPFDT+RG+LA Sbjct 301 LQAIGQPPVAVTTHPFDTKRGQLA 324 >gi|118472731|ref|YP_888545.1| cytochrome C oxidase subunit 2 [Mycobacterium smegmatis str. MC2 155] gi|118174018|gb|ABK74914.1| cytochrome c oxidase subunit 2 [Mycobacterium smegmatis str. MC2 155] Length=341 Score = 550 bits (1417), Expect = 2e-154, Method: Compositional matrix adjust. Identities = 254/335 (76%), Positives = 290/335 (87%), Gaps = 0/335 (0%) Query 26 RGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVI 85 RG R +AL+ +LG A+ +SGCSWS+AL +GWP GITPEA LNRELWIG+VIAS AVG I Sbjct 4 RGFRVVALSIVLGGSALLLSGCSWSDALALGWPTGITPEAKLNRELWIGSVIASFAVGAI 63 Query 86 VWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQI 145 VWGLIFW++ FHRKK TDTELPRQFGYNMPLEL LTVIPFLIISVLFYFTVVVQE+M+ Sbjct 64 VWGLIFWTSAFHRKKATDTELPRQFGYNMPLELTLTVIPFLIISVLFYFTVVVQERMMHK 123 Query 146 AKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVG 205 +PEVVID+T+FQWNWKFGYQ++ F DG+ YDGADPERK AM S+PEGKD++G E VG Sbjct 124 DPNPEVVIDVTAFQWNWKFGYQKIAFADGSFDYDGADPERKEAMTSRPEGKDEHGIEKVG 183 Query 206 PVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKR 265 P+RG+ EDRTYLNFDK+ETLGTS+EIPVLVLP+GKRIEF + SADVIH FWVPEFLFKR Sbjct 184 PIRGMTPEDRTYLNFDKIETLGTSSEIPVLVLPAGKRIEFVLNSADVIHGFWVPEFLFKR 243 Query 266 DVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQR 325 DV+P P ANNS NVFQ+ EI +TGAFVG C EMCGT+H+MMNFEVRVV PNDFKAY+ QR Sbjct 244 DVLPEPKANNSDNVFQVSEIQQTGAFVGRCTEMCGTFHAMMNFEVRVVEPNDFKAYIDQR 303 Query 326 IDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 GKTNAEAL AINQPPLA+TT PF++RRGEL PQ Sbjct 304 NAGKTNAEALAAINQPPLAITTEPFESRRGELVPQ 338 >gi|145223536|ref|YP_001134214.1| cytochrome c oxidase subunit II [Mycobacterium gilvum PYR-GCK] gi|315443882|ref|YP_004076761.1| heme/copper-type cytochrome/quinol oxidases, subunit 2 [Mycobacterium sp. Spyr1] gi|145216022|gb|ABP45426.1| cytochrome c oxidase, subunit II [Mycobacterium gilvum PYR-GCK] gi|315262185|gb|ADT98926.1| heme/copper-type cytochrome/quinol oxidases, subunit 2 [Mycobacterium sp. Spyr1] Length=344 Score = 532 bits (1371), Expect = 3e-149, Method: Compositional matrix adjust. Identities = 253/336 (76%), Positives = 288/336 (86%), Gaps = 0/336 (0%) Query 25 ARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGV 84 ARGL+ +AL+ +LG + V +SGCSWSE LG+GWP GITPEAH NRELWIG+VIA+ VG Sbjct 3 ARGLKLVALSLLLGGMTVLLSGCSWSEVLGLGWPNGITPEAHANRELWIGSVIAAFVVGG 62 Query 85 IVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQ 144 IV+ L FW+ +FHRKK TDTELPRQFGYNMPLEL LTVIPF+IISVLFYFTVVVQE+ML+ Sbjct 63 IVYVLTFWTTIFHRKKATDTELPRQFGYNMPLELTLTVIPFIIISVLFYFTVVVQEEMLK 122 Query 145 IAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELV 204 +PEVVID+T+FQWNWKFGYQ+V F DGT++YDG D ERK AM S PEG D++G E + Sbjct 123 KEPNPEVVIDVTAFQWNWKFGYQKVEFADGTMSYDGVDNERKEAMTSAPEGADEHGIEQI 182 Query 205 GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFK 264 G + G EDRTYLNFDK+ETLG+STEIPVLV+PSGKRIEFQ+ASADVIH FWVPEFLFK Sbjct 183 GAIAGKRPEDRTYLNFDKIETLGSSTEIPVLVVPSGKRIEFQIASADVIHGFWVPEFLFK 242 Query 265 RDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQ 324 RDV+PNP NNS N+FQ+ EI +TGAFVG C EMCGTYH+MMNFE+RVV PNDFKAYL Q Sbjct 243 RDVLPNPKENNSDNIFQVSEIMQTGAFVGRCTEMCGTYHAMMNFELRVVEPNDFKAYLAQ 302 Query 325 RIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 R GKTNAEALRAINQ PLAVTT PFDTRRGELAPQ Sbjct 303 REAGKTNAEALRAINQEPLAVTTKPFDTRRGELAPQ 338 >gi|120404535|ref|YP_954364.1| cytochrome c oxidase subunit II [Mycobacterium vanbaalenii PYR-1] gi|119957353|gb|ABM14358.1| cytochrome c oxidase, subunit II [Mycobacterium vanbaalenii PYR-1] Length=344 Score = 531 bits (1367), Expect = 8e-149, Method: Compositional matrix adjust. Identities = 255/336 (76%), Positives = 289/336 (87%), Gaps = 0/336 (0%) Query 25 ARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGV 84 ARGL+ +AL+ +LG V +SGCSWSE LG+GWP GITPEAHLNRELWIG+VIA+L VG Sbjct 3 ARGLKLVALSLLLGGTTVLLSGCSWSEVLGLGWPNGITPEAHLNRELWIGSVIAALVVGA 62 Query 85 IVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQ 144 IV+ L+FW+ FHRKK DTELPRQFGYNMPLEL LTVIPF+IISVLFYFTVVVQEKM+ Sbjct 63 IVYVLLFWTMAFHRKKKGDTELPRQFGYNMPLELTLTVIPFIIISVLFYFTVVVQEKMVH 122 Query 145 IAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELV 204 +PEVVID+T++QWNWKFGYQ+V+F DGTLTYDG D RK AMVS+PEG D +G + V Sbjct 123 KEDNPEVVIDVTAYQWNWKFGYQKVDFADGTLTYDGEDNARKEAMVSRPEGVDSHGNDRV 182 Query 205 GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFK 264 G + G N EDR+YLNFDK+ETLG+STEIPVLV+P+GKRIEF++ASADVIH FWVPEFLFK Sbjct 183 GAIYGKNPEDRSYLNFDKIETLGSSTEIPVLVVPAGKRIEFEIASADVIHGFWVPEFLFK 242 Query 265 RDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQ 324 RDVMPNP NNS NVFQI EI +TGAFVG C EMCGTYH+MMNFE+RVV PNDFKAYL Q Sbjct 243 RDVMPNPEENNSDNVFQISEINQTGAFVGRCTEMCGTYHAMMNFELRVVEPNDFKAYLDQ 302 Query 325 RIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 R GKTNAEAL AINQPPLA+TT PFDTRRGELAPQ Sbjct 303 RSAGKTNAEALLAINQPPLAITTKPFDTRRGELAPQ 338 >gi|333990342|ref|YP_004522956.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium sp. JDM601] gi|333486310|gb|AEF35702.1| transmembrane cytochrome C oxidase (subunit II) CtaC [Mycobacterium sp. JDM601] Length=331 Score = 530 bits (1365), Expect = 2e-148, Method: Compositional matrix adjust. Identities = 246/327 (76%), Positives = 286/327 (88%), Gaps = 2/327 (0%) Query 36 MLGALAVTVSGCS--WSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWS 93 MLG LAVT+SGCS W++ +G GWP+GITPEA N +LW+G VIAS+ +G IVWG+IFWS Sbjct 1 MLGLLAVTLSGCSFDWTDVVGFGWPKGITPEAEANYKLWLGMVIASVVIGGIVWGMIFWS 60 Query 94 AVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVI 153 A FHRKK TDTELPRQFGYNMPLEL LTV+PFL I+V+FYFTVVVQEKML DPEVV+ Sbjct 61 AFFHRKKATDTELPRQFGYNMPLELGLTVLPFLAIAVIFYFTVVVQEKMLHHEPDPEVVV 120 Query 154 DITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRGLNTE 213 ++T+FQWNWKFGYQ+V+F+DGTL+YDGAD +RK A++SKPEG D++GEELVGP+RGLN E Sbjct 121 NVTAFQWNWKFGYQKVDFRDGTLSYDGADQQRKDALISKPEGVDEHGEELVGPIRGLNAE 180 Query 214 DRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVA 273 DR+YLNFDKVETLGT+ E+PVLV+PSGKRIEF + SADVIH+FWVPEFLFKRDV+ P Sbjct 181 DRSYLNFDKVETLGTTNEVPVLVVPSGKRIEFVLNSADVIHSFWVPEFLFKRDVIAWPER 240 Query 274 NNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAE 333 NN VN FQ+ EI K GAFVGHCAEMCGTYH+MMNFEVRVV+PNDFKAYL QRI GK+NAE Sbjct 241 NNQVNTFQVSEIQKEGAFVGHCAEMCGTYHAMMNFEVRVVSPNDFKAYLGQRIAGKSNAE 300 Query 334 ALRAINQPPLAVTTHPFDTRRGELAPQ 360 AL AINQ PLA+TT PFD+RRG LAPQ Sbjct 301 ALEAINQEPLAITTQPFDSRRGLLAPQ 327 >gi|108800264|ref|YP_640461.1| cytochrome c oxidase subunit II [Mycobacterium sp. MCS] gi|119869392|ref|YP_939344.1| cytochrome c oxidase subunit II [Mycobacterium sp. KMS] gi|126435887|ref|YP_001071578.1| cytochrome c oxidase subunit II [Mycobacterium sp. JLS] gi|108770683|gb|ABG09405.1| cytochrome c oxidase, subunit II [Mycobacterium sp. MCS] gi|119695481|gb|ABL92554.1| cytochrome c oxidase, subunit II [Mycobacterium sp. KMS] gi|126235687|gb|ABN99087.1| cytochrome c oxidase, subunit II [Mycobacterium sp. JLS] Length=352 Score = 513 bits (1321), Expect = 2e-143, Method: Compositional matrix adjust. Identities = 248/346 (72%), Positives = 284/346 (83%), Gaps = 11/346 (3%) Query 26 RGL----RQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLA 81 RGL R+ AL +LGA A+ +SGCSW+EAL +GWP+GITPEAHLNRELWIG++IA+L Sbjct 4 RGLKAVARKAALVVVLGATALVLSGCSWTEALALGWPKGITPEAHLNRELWIGSMIAALV 63 Query 82 VGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEK 141 VG IV+ LIFW + FHRKK +DTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQE+ Sbjct 64 VGGIVYFLIFWVSAFHRKKASDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEQ 123 Query 142 MLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKP--EGKDKY 199 M+ +PEVV+D+T+FQWNWKFGY +VNF DGT+ YDG D ER A+ S+P EG Sbjct 124 MVGKEDNPEVVVDVTAFQWNWKFGYNKVNFADGTMNYDGVDEERSAAVASRPSEEGAGAV 183 Query 200 GEELV-----GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIH 254 GE G + G N EDR+YL FD++ETLGTS EIPVLVLPS KR+EF++ASADV H Sbjct 184 GEPEAAHTEHGAIAGQNPEDRSYLAFDEIETLGTSDEIPVLVLPSEKRVEFRIASADVAH 243 Query 255 AFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVT 314 AFWVPEFLFKRDV PNP NNS NVFQ+ EIT+TGAFVG CAE+CGTYH+MMNFEVRVV Sbjct 244 AFWVPEFLFKRDVYPNPEQNNSDNVFQVSEITETGAFVGRCAELCGTYHAMMNFEVRVVP 303 Query 315 PNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 PNDFKAYL QR+ GKTNAEAL AINQPP AVTT PFDTRRGE+APQ Sbjct 304 PNDFKAYLNQRMAGKTNAEALIAINQPPTAVTTKPFDTRRGEMAPQ 349 >gi|169629048|ref|YP_001702697.1| cytochrome c oxidase subunit 2 [Mycobacterium abscessus ATCC 19977] gi|169241015|emb|CAM62043.1| Probable cytochrome c oxidase subunit 2 precursor [Mycobacterium abscessus] Length=349 Score = 496 bits (1276), Expect = 3e-138, Method: Compositional matrix adjust. Identities = 235/330 (72%), Positives = 271/330 (83%), Gaps = 1/330 (0%) Query 31 LALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAH-LNRELWIGAVIASLAVGVIVWGL 89 LA +LGA + +SGCS E L GWPEGITPEAH LW AV+ASL VGVIVWGL Sbjct 12 LATVVLLGAASFLLSGCSVQEVLRFGWPEGITPEAHDYMAPLWTWAVVASLVVGVIVWGL 71 Query 90 IFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDP 149 FW+ FHR K DTE PRQFGYN+PLELVLTV+PFLII+VLFYFTVVVQ K++ +P Sbjct 72 TFWTVAFHRHKPGDTEFPRQFGYNLPLELVLTVVPFLIIAVLFYFTVVVQNKVMHKDPNP 131 Query 150 EVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELVGPVRG 209 EVV+D+T+FQWNWKFGYQ+V FKDG+L Y+GADPERK+AM SKPEGKD +G ELVGPVRG Sbjct 132 EVVVDVTAFQWNWKFGYQKVAFKDGSLNYEGADPERKKAMTSKPEGKDAHGNELVGPVRG 191 Query 210 LNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMP 269 LN EDRTYLNFDK+ET+GTS+EIPVLV+PSGK IEFQ+ASADVIH+F V FLF RDVMP Sbjct 192 LNREDRTYLNFDKIETVGTSSEIPVLVVPSGKSIEFQLASADVIHSFRVVPFLFTRDVMP 251 Query 270 NPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGK 329 P ANNS NVFQ+ +I K GAFVG C EMCGTYHSMM FE+RVV+PNDFK YL+ R DGK Sbjct 252 EPKANNSDNVFQVSKILKEGAFVGRCVEMCGTYHSMMAFELRVVSPNDFKFYLKARQDGK 311 Query 330 TNAEALRAINQPPLAVTTHPFDTRRGELAP 359 +NAEAL +I Q P+++TT PFD RRG+LAP Sbjct 312 SNAEALASIGQSPVSITTRPFDGRRGDLAP 341 >gi|229490357|ref|ZP_04384198.1| cytochrome c oxidase subunit 2 [Rhodococcus erythropolis SK121] gi|229322647|gb|EEN88427.1| cytochrome c oxidase subunit 2 [Rhodococcus erythropolis SK121] Length=352 Score = 411 bits (1056), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 193/336 (58%), Positives = 254/336 (76%), Gaps = 7/336 (2%) Query 26 RGLRQLALAAMLGALAVTVSGCSW-SEALGIGWPEGITPEAHLNRELWIGAVIASLAVGV 84 R LR+ LA LG A+ +SGCS +E L GWP GITPEA RELW +V+A+L +GV Sbjct 5 RILRRAGLAVSLGIAALLLSGCSIDNEVLRFGWPSGITPEATRMRELWTWSVVAALVMGV 64 Query 85 IVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQ 144 +VWGL+FW+ +FHRKK E PRQ YN+PLEL T +PF+II+VLFYFTV+VQ +L Sbjct 65 LVWGLVFWAVIFHRKKKDSPEFPRQTAYNVPLELGYTAVPFVIIAVLFYFTVIVQNHVLD 124 Query 145 IAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELV 204 +P+VV+D+T+FQWNWKFGY+ + F DG+ Y+G D E + A ++ +++GEE+ Sbjct 125 KTDNPDVVVDVTAFQWNWKFGYRSIEFGDGSAKYNGIDVEAEEAAKTEGSTVNEHGEEVP 184 Query 205 GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFK 264 GP+ G +TED +YL++DK+ET+G+S EIP+LVLP+GKRI+F++AS+DVIHAFWVPEFLFK Sbjct 185 GPIHGNSTEDLSYLHYDKIETVGSSQEIPILVLPTGKRIQFELASSDVIHAFWVPEFLFK 244 Query 265 RDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQ 324 RDV+PNP N+S N+FQI EI K GAFVG CAEMCGT+H+MMNFEVR V+P DF Y++ Sbjct 245 RDVLPNPKENHSDNIFQISEIEKEGAFVGRCAEMCGTFHAMMNFEVRAVSPEDFAKYIEL 304 Query 325 R---IDGK---TNAEALRAINQPPLAVTTHPFDTRR 354 R +GK T AEAL+AI Q P+A +T PF+T R Sbjct 305 RKGDAEGKGGLTTAEALQAIGQSPVATSTTPFNTDR 340 >gi|54023676|ref|YP_117918.1| putative cytochrome c oxidase subunit II [Nocardia farcinica IFM 10152] gi|62899937|sp|Q5YZ37.1|COX2_NOCFA RecName: Full=Probable cytochrome c oxidase subunit 2; AltName: Full=Cytochrome aa3 subunit 2; AltName: Full=Cytochrome c oxidase polypeptide II gi|54015184|dbj|BAD56554.1| putative cytochrome c oxidase subunit II [Nocardia farcinica IFM 10152] Length=375 Score = 410 bits (1055), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 206/347 (60%), Positives = 250/347 (73%), Gaps = 9/347 (2%) Query 15 CRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEA-LGIGWPEGITPEAHLNRELWI 73 RP RG G R LR+ LA LG A+ VSGCS L GWP G+TP+A RELW Sbjct 20 ARPVRGRQG--RILRRAGLAVSLGITAMLVSGCSIDNVWLRFGWPSGVTPQATRMRELWT 77 Query 74 GAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFY 133 ++IA+LA+GV+VWGL FW+ VFHRKK E PRQ GYN+PLEL T IPF+II+VLFY Sbjct 78 WSIIAALAMGVLVWGLTFWTVVFHRKKKDSPEFPRQTGYNVPLELTYTAIPFVIIAVLFY 137 Query 134 FTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKP 193 FTVVVQ + + DP+V +D+T+FQWNWKFGY+ V+FKDG ++G D R+ A ++ Sbjct 138 FTVVVQNYVHEKVADPDVTVDVTAFQWNWKFGYREVDFKDGGYQFNGIDTAREEAAQAQL 197 Query 194 EGKDK-----YGEELVGPVRGLNTED-RTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQM 247 + ++ +G GPV G D +YL++D VET+GTSTEIPVLVLP+GK IEFQ+ Sbjct 198 KEYEERVDTEHGHPQPGPVHGKPENDILSYLHYDTVETVGTSTEIPVLVLPTGKVIEFQL 257 Query 248 ASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMN 307 A+ADVIHAFWVPEFLFKRDVMPNP N+S NVFQI EI K GAFVG CAEMCGTYHSMMN Sbjct 258 AAADVIHAFWVPEFLFKRDVMPNPKENHSDNVFQITEIEKEGAFVGRCAEMCGTYHSMMN 317 Query 308 FEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRR 354 FEVR V+P F YL +R GKTNAEAL AI + P+A +T PF+T R Sbjct 318 FEVRAVSPEKFTRYLDERRAGKTNAEALAAIGESPVATSTRPFNTDR 364 >gi|226307089|ref|YP_002767049.1| cytochrome c oxidase subunit II [Rhodococcus erythropolis PR4] gi|226186206|dbj|BAH34310.1| cytochrome c oxidase subunit II [Rhodococcus erythropolis PR4] Length=354 Score = 404 bits (1038), Expect = 1e-110, Method: Compositional matrix adjust. Identities = 193/337 (58%), Positives = 253/337 (76%), Gaps = 7/337 (2%) Query 25 ARGLRQLALAAMLGALAVTVSGCSW-SEALGIGWPEGITPEAHLNRELWIGAVIASLAVG 83 R LR+ LA LG A+ +SGCS +E L GWP GITPEA RELW +V+A+L +G Sbjct 6 GRILRRAGLAVSLGIAALLLSGCSIDNEVLRFGWPSGITPEATRMRELWTWSVVAALVMG 65 Query 84 VIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKML 143 V+VWGL+FW+ +FHRKK E PRQ YN+PLEL T +PF+II+VLFYFTV+VQ +L Sbjct 66 VLVWGLVFWAVIFHRKKKDSPEFPRQTAYNVPLELGYTAVPFVIIAVLFYFTVIVQNHVL 125 Query 144 QIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEEL 203 +P+VV+D+T+FQWNWKFGY+ + F DG+ Y+G D E + A ++ + +GEE+ Sbjct 126 DKTDNPDVVVDVTAFQWNWKFGYRSIEFGDGSAKYNGIDVEAEEAAKAEGSTVNDHGEEV 185 Query 204 VGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLF 263 GP+ G +TED +YL++DK+ET+G+S EIP+LVLP+GKRI+F++AS+DVIHAFWVPEFLF Sbjct 186 PGPIHGNSTEDLSYLHYDKIETVGSSQEIPILVLPTGKRIQFELASSDVIHAFWVPEFLF 245 Query 264 KRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQ 323 KRDV+PNP N+S N+FQI EI K GAFVG CAEMCGT+H+MMNFEVR V+P DF Y++ Sbjct 246 KRDVLPNPKENHSDNIFQISEIEKEGAFVGRCAEMCGTFHAMMNFEVRAVSPEDFAKYIE 305 Query 324 QR---IDGK---TNAEALRAINQPPLAVTTHPFDTRR 354 R +GK T AEAL+AI Q P+A +T PF+T R Sbjct 306 LRKGDAEGKGGLTTAEALQAIGQSPVATSTTPFNTDR 342 >gi|111018150|ref|YP_701122.1| cytochrome c oxidase subunit II [Rhodococcus jostii RHA1] gi|110817680|gb|ABG92964.1| probable cytochrome c oxidase subunit II [Rhodococcus jostii RHA1] Length=355 Score = 397 bits (1019), Expect = 2e-108, Method: Compositional matrix adjust. Identities = 189/339 (56%), Positives = 244/339 (72%), Gaps = 9/339 (2%) Query 26 RGLRQLALAAMLGALAVTVSGCSW-SEALGIGWPEGITPEAHLNRELWIGAVIASLAVGV 84 R LR+ LA LG A+ +SGCS +E L GWP G+TP+AH RELW +VIA+L +GV Sbjct 7 RILRRAGLAVSLGIAALLLSGCSIDNEVLRFGWPSGVTPQAHRMRELWTWSVIAALVMGV 66 Query 85 IVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQ 144 +VWGL FW+ +FHRKK E PRQ YN+PLEL T +PF+II+VLFYFTV+VQ +L+ Sbjct 67 LVWGLTFWAVIFHRKKKDSPEFPRQTAYNVPLELAYTAVPFVIIAVLFYFTVIVQNHVLE 126 Query 145 IAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKDKYGEELV 204 +P VV+D+T++QWNWKFGY+ ++ +G YDG D E + A+ S P + K E Sbjct 127 KEDNPNVVVDVTAYQWNWKFGYRSIDLGEGGGKYDGVDQEAQAAVESAPASEAKAEGEHA 186 Query 205 --GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFL 262 GP+ G +D +YL++DK+ET+G+S EIP+LVLP+GKRI+F++ASADVIHAFWVPEFL Sbjct 187 QPGPIHGKTPQDLSYLHYDKIETIGSSNEIPILVLPTGKRIQFELASADVIHAFWVPEFL 246 Query 263 FKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYL 322 FKRDV PNP N+S NVFQI EI K GAFVG CAEMCGT+H+MMNFEVR V+P+ F Y+ Sbjct 247 FKRDVNPNPKENHSDNVFQISEIEKEGAFVGRCAEMCGTFHAMMNFEVRAVSPDKFAQYI 306 Query 323 QQRIDGK------TNAEALRAINQPPLAVTTHPFDTRRG 355 + R T AEAL+AI + P+A +T PF T RG Sbjct 307 ELRKPASEGGRDLTTAEALQAIGESPVATSTSPFTTDRG 345 >gi|226360279|ref|YP_002778057.1| cytochrome c oxidase subunit II [Rhodococcus opacus B4] gi|226238764|dbj|BAH49112.1| cytochrome c oxidase subunit II [Rhodococcus opacus B4] Length=367 Score = 396 bits (1017), Expect = 3e-108, Method: Compositional matrix adjust. Identities = 192/351 (55%), Positives = 247/351 (71%), Gaps = 10/351 (2%) Query 15 CRPQRGSG-GPARGLRQLALAAMLGALAVTVSGCSW-SEALGIGWPEGITPEAHLNRELW 72 C Q G R LR+ LA LG A+ +SGCS +E L GWP G+TP+AH RELW Sbjct 7 CGDQEGVNVAQGRILRRAGLAVSLGIAALLLSGCSIDNEVLRFGWPSGVTPQAHRMRELW 66 Query 73 IGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLF 132 +VIA+L +GV+VWGL FW+ +FHRKK E PRQ YN+PLEL T +PF+II+VLF Sbjct 67 TWSVIAALVMGVLVWGLTFWAVIFHRKKKDSPEFPRQTAYNVPLELAYTAVPFVIIAVLF 126 Query 133 YFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSK 192 YFTVVVQ +L+ +P VV+D+T++QWNWKFGY+ ++ +G YDG D E + A+ S Sbjct 127 YFTVVVQNHVLEKEDNPNVVVDVTAYQWNWKFGYRSIDLGEGGGKYDGVDQEAQAAVESA 186 Query 193 PEGKDKYGEELV--GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASA 250 P + + E GP+ G +D +YL++DK+ET+G+S EIP+LVLP+GKRI+F++ASA Sbjct 187 PASEAEAEGEHAQPGPIHGKTPQDLSYLHYDKIETIGSSNEIPILVLPTGKRIQFELASA 246 Query 251 DVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEV 310 DVIHAFWVPEFLFKRDV PNP N+S NVFQI EI K GAFVG CAEMCGT+H+MMNFEV Sbjct 247 DVIHAFWVPEFLFKRDVNPNPKENHSDNVFQISEIEKEGAFVGRCAEMCGTFHAMMNFEV 306 Query 311 RVVTPNDFKAYLQQRIDGK------TNAEALRAINQPPLAVTTHPFDTRRG 355 R V+P+ F Y++ R T AEAL+AI + P+A +T PF T RG Sbjct 307 RAVSPDKFAQYIELRKPASEGGRDLTTAEALQAIGESPVATSTSPFTTDRG 357 >gi|312140192|ref|YP_004007528.1| cytochrome c oxidase subunit ii [Rhodococcus equi 103S] gi|311889531|emb|CBH48848.1| cytochrome c oxidase subunit II [Rhodococcus equi 103S] Length=352 Score = 394 bits (1012), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 191/339 (57%), Positives = 239/339 (71%), Gaps = 9/339 (2%) Query 25 ARGLRQLALAAMLGALAVTVSGCSWSEA-LGIGWPEGITPEAHLNRELWIGAVIASLAVG 83 R LR+ LA LG A+ +SGCS + L GWP G+TP+A RELW +VIA+L +G Sbjct 4 GRILRRAGLAGSLGIAAMLLSGCSIDNSVLRFGWPSGVTPQAERMRELWTWSVIAALVMG 63 Query 84 VIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKML 143 VIVWGL FW VFHRKK E PRQ YN+PLEL T +PF+II+VLFYFTVVVQ + Sbjct 64 VIVWGLTFWVVVFHRKKKDSPEFPRQTAYNVPLELFYTAVPFVIIAVLFYFTVVVQNYVT 123 Query 144 QIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMV--SKPEGKDKYGE 201 + +P VV+D+T++QWNWKFGY+ ++ DG YDG D A + SKPEG D++G+ Sbjct 124 EKKDNPNVVVDVTAYQWNWKFGYRSIDLGDGAAKYDGIDQAATEAALAASKPEGVDEHGK 183 Query 202 ELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEF 261 E +G + G N +D +YL +DK+ET+GTS E+P+LVLP+GKRIEF +AS+DVIH+FWVPEF Sbjct 184 EKIGAIHGKNPQDLSYLAYDKIETVGTSNEVPILVLPTGKRIEFVLASSDVIHSFWVPEF 243 Query 262 LFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAY 321 LFKRDV PNP N+S NVFQI EI K GAFVG CAEMCGT+H+MMNFEVR VTP F+ Y Sbjct 244 LFKRDVNPNPKENHSDNVFQISEIEKEGAFVGRCAEMCGTFHAMMNFEVRAVTPEKFEQY 303 Query 322 LQQRID------GKTNAEALRAINQPPLAVTTHPFDTRR 354 +Q R G EAL +I + P A +T PF T R Sbjct 304 IQARKSVEEGGKGMNTGEALASIGESPTATSTSPFYTDR 342 >gi|333918945|ref|YP_004492526.1| cytochrome c oxidase subunit II [Amycolicicoccus subflavus DQS3-9A1] gi|333481166|gb|AEF39726.1| Cytochrome c oxidase subunit II [Amycolicicoccus subflavus DQS3-9A1] Length=354 Score = 382 bits (980), Expect = 6e-104, Method: Compositional matrix adjust. Identities = 184/343 (54%), Positives = 243/343 (71%), Gaps = 10/343 (2%) Query 20 GSGGPARGLRQLALAAMLGALAVTVSGCSWSEA-LGIGWPEGITPEAHLNRELWIGAVIA 78 G R R+ LAA LG AV +SGCS A L GWP G+TP+A + RELW +V+A Sbjct 2 AHGSQRRIARRTGLAATLGFAAVLLSGCSIDNAVLRFGWPSGVTPQAEMMRELWTWSVVA 61 Query 79 SLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVV 138 +L +GV+VWGL FW+ FHRKK + PRQ YN+PLEL+ T +PF+II+VLFYFTVVV Sbjct 62 ALVMGVLVWGLTFWTVAFHRKKKDSPDFPRQTAYNVPLELLYTAVPFVIIAVLFYFTVVV 121 Query 139 QEKMLQIAK-DPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKD 197 Q + EVV+D+T++QWNWKFGY+ ++ +DGT +YDG D E + + + E + Sbjct 122 QNFVNDKEHGQAEVVVDVTAYQWNWKFGYRTIDMQDGTPSYDGEDLETPQVIAAGQEADE 181 Query 198 KYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFW 257 + EE GP+ G D +YL ++K+ET+G+S EIPVLVLP+ +RIEF + S+DVIH+FW Sbjct 182 Q--EEDYGPIHGTAKRDLSYLQYNKIETVGSSEEIPVLVLPTNRRIEFVLNSSDVIHSFW 239 Query 258 VPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPND 317 VPEFLFKRDV+PNP+ N+S N FQI EI + GAFVG CAEMCGTYH+MMNFEVR V+P Sbjct 240 VPEFLFKRDVLPNPIENHSDNSFQISEIEREGAFVGRCAEMCGTYHAMMNFEVRAVSPER 299 Query 318 FKAYLQQRI------DGKTNAEALRAINQPPLAVTTHPFDTRR 354 F Y++ R +G +NAEAL AI + P+++TT PF+TRR Sbjct 300 FAEYIELRKPVEDGGEGLSNAEALAAIGEEPVSITTVPFETRR 342 >gi|343924163|ref|ZP_08763726.1| cytochrome c oxidase subunit II [Gordonia alkanivorans NBRC 16433] gi|343765968|dbj|GAA10652.1| cytochrome c oxidase subunit II [Gordonia alkanivorans NBRC 16433] Length=362 Score = 379 bits (972), Expect = 6e-103, Method: Compositional matrix adjust. Identities = 186/338 (56%), Positives = 242/338 (72%), Gaps = 12/338 (3%) Query 28 LRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVW 87 +++L + LG A+ +SGC +EA+ GWPEG+TP+ +LW +VIA+L +G++VW Sbjct 1 MKRLGIVVALGLGALLMSGCDANEAMRFGWPEGVTPQGKKMVDLWTWSVIAALVMGILVW 60 Query 88 GLIFWSAVFHRKKNTDTEL-PRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIA 146 LIFW+ FHR + + PRQ YN+PLEL T IPF+II+VLFYFTV+VQ + Sbjct 61 ALIFWTITFHRANDAKKGVFPRQTAYNVPLELTYTAIPFVIIAVLFYFTVIVQNDVEGKN 120 Query 147 KDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADP--------ERKRAMVSKPEGKDK 198 D +VV+D+T+FQWNWKFGY +V F DG+ TYDG + E+ V++PE + + Sbjct 121 DDSKVVVDVTAFQWNWKFGYNKVIFSDGS-TYDGFEAAGNPFQVQEQAGKAVAEPEVEGE 179 Query 199 YGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWV 258 +G EL GP G + + R YL FDK+ETLG+STEIPVLVLP+GKRIEF +ASADV+H+FWV Sbjct 180 HGGELPGPAGGRDDDIRDYLKFDKIETLGSSTEIPVLVLPTGKRIEFNIASADVVHSFWV 239 Query 259 PEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDF 318 PEFL+KRDVMP P N++ +FQI I +TGAFVG CAEMCGTYHSMMNFEVR V+P DF Sbjct 240 PEFLYKRDVMPFPKENSTDPIFQIGSIDRTGAFVGRCAEMCGTYHSMMNFEVRAVSPEDF 299 Query 319 KAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRR 354 +Y++ R TNAEAL +I Q P AVTT PFD+RR Sbjct 300 DSYIRFRQSNPEATNAEALASICQAPEAVTTVPFDSRR 337 >gi|262202953|ref|YP_003274161.1| cytochrome C oxidase subunit II [Gordonia bronchialis DSM 43247] gi|262086300|gb|ACY22268.1| cytochrome c oxidase subunit II [Gordonia bronchialis DSM 43247] Length=398 Score = 375 bits (964), Expect = 5e-102, Method: Compositional matrix adjust. Identities = 187/345 (55%), Positives = 241/345 (70%), Gaps = 6/345 (1%) Query 16 RPQ-RGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIG 74 RP+ R +R ++++ + A L A+ ++GC +A+ GWPEGITPEA +LW Sbjct 28 RPRSRQVSSTSRAVKRVGVVAGLALAALVMTGCDARDAMRFGWPEGITPEAKQMGDLWTW 87 Query 75 AVIASLAVGVIVWGLIFWSAVFHRKKNTDTEL-PRQFGYNMPLELVLTVIPFLIISVLFY 133 +VIA+L +G++VW LIFW+ FHR + + PRQ YN+PLEL T IPF+II+VLFY Sbjct 88 SVIAALIMGILVWALIFWTISFHRANDEKKGVFPRQTAYNVPLELTYTAIPFIIIAVLFY 147 Query 134 FTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPE--RKRAMVS 191 FTV+VQ + D +VV+D+T+FQWNWKFGY+ V F DGT Y+GA P Sbjct 148 FTVIVQNDVESKNNDSKVVVDVTAFQWNWKFGYRSVIFDDGTPRYEGAQPGVGEGNPFAG 207 Query 192 KPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASAD 251 E + +GEEL P G + + RTYL FDK+ET+G+S+EIP+LVLP+GKRIEF +A+AD Sbjct 208 PQEREMHHGEELPFPAGGRDDDIRTYLRFDKIETIGSSSEIPILVLPTGKRIEFNLAAAD 267 Query 252 VIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVR 311 VIH+FWVPEFLFKRDV+P P N++ NVFQI I + GAFVG CAEMCGTYHSMMNFEVR Sbjct 268 VIHSFWVPEFLFKRDVLPFPEQNHTDNVFQISSIDREGAFVGRCAEMCGTYHSMMNFEVR 327 Query 312 VVTPNDFKAYLQ--QRIDGKTNAEALRAINQPPLAVTTHPFDTRR 354 V+P F AY++ R TNA+AL AI Q P +VTT PFDTRR Sbjct 328 AVSPQAFDAYIKFRDRNPQATNAQALEAICQEPKSVTTVPFDTRR 372 >gi|326382511|ref|ZP_08204202.1| cytochrome c oxidase subunit II [Gordonia neofelifaecis NRRL B-59395] gi|326198630|gb|EGD55813.1| cytochrome c oxidase subunit II [Gordonia neofelifaecis NRRL B-59395] Length=353 Score = 361 bits (927), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 174/327 (54%), Positives = 228/327 (70%), Gaps = 8/327 (2%) Query 36 MLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAV 95 +LG + SGCS EAL GWPEG+TPE R W +VIA+LA+GV+VW LIFW+ Sbjct 2 VLGVGVLMTSGCSAEEALRFGWPEGVTPEGQEMRNFWTWSVIAALAMGVLVWALIFWTIT 61 Query 96 FHRKKNTDT---ELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVV 152 FHR+K T E+PRQ GYN+PLEL T IPF++I+V+FYFTVVVQ + + ++P V Sbjct 62 FHRRKKNGTAEDEIPRQTGYNVPLELAYTAIPFVLIAVMFYFTVVVQNTVEKKEENPAVA 121 Query 153 IDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAM---VSKPEGKDKYGEELVGPVRG 209 ID+T+FQWNWKFGY+ V L D ++ A ++K +D EE++G G Sbjct 122 IDVTAFQWNWKFGYKSVTIDGQQLVNAKTDSKKGEAFKEQIAKYREEDGKQEEILGAAGG 181 Query 210 LNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMP 269 E R YL++DK+ETLG+S+EIP+LVLP+ RIEF +A+ADVIH+FWVPEFLFKRDVMP Sbjct 182 RANEIRDYLSYDKIETLGSSSEIPILVLPTNTRIEFDLAAADVIHSFWVPEFLFKRDVMP 241 Query 270 NPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRID-- 327 P N+ + FQI +I + GAFVG CAEMCGT+H+MMNFE+R V+P F Y++ R Sbjct 242 FPEQNHQDSSFQISKIDREGAFVGRCAEMCGTFHAMMNFEIRAVSPQTFTNYIKYRQSHP 301 Query 328 GKTNAEALRAINQPPLAVTTHPFDTRR 354 +NA+AL+A+ Q P +VTT PFDTRR Sbjct 302 DASNAQALQAVCQVPQSVTTVPFDTRR 328 >gi|325676926|ref|ZP_08156598.1| cytochrome c oxidase, subunit II [Rhodococcus equi ATCC 33707] gi|325552226|gb|EGD21916.1| cytochrome c oxidase, subunit II [Rhodococcus equi ATCC 33707] Length=305 Score = 359 bits (922), Expect = 3e-97, Method: Compositional matrix adjust. Identities = 172/294 (59%), Positives = 213/294 (73%), Gaps = 8/294 (2%) Query 69 RELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLII 128 RELW +VIA+L +GVIVWGL FW VFHRKK E PRQ YN+PLEL T +PF+II Sbjct 2 RELWTWSVIAALVMGVIVWGLTFWVVVFHRKKKDSPEFPRQTAYNVPLELFYTAVPFVII 61 Query 129 SVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRA 188 +VLFYFTVVVQ + + +P VV+D+T++QWNWKFGY+ V+ DG YDG D A Sbjct 62 AVLFYFTVVVQNYVTEKKDNPNVVVDVTAYQWNWKFGYRSVDLGDGAAKYDGIDQAATEA 121 Query 189 MV--SKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQ 246 + SKPEG D++G+E +G + G N +D +YL +DK+ET+GTS E+P+LVLP+GKRIEF Sbjct 122 ALAASKPEGVDEHGKEKIGAIHGKNPQDLSYLAYDKIETVGTSNEVPILVLPTGKRIEFV 181 Query 247 MASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMM 306 +AS+DVIH+FWVPEFLFKRDV PNP N+S NVFQI EI K GAFVG CAEMCGT+H+MM Sbjct 182 LASSDVIHSFWVPEFLFKRDVNPNPKENHSDNVFQISEIEKEGAFVGRCAEMCGTFHAMM 241 Query 307 NFEVRVVTPNDFKAYLQQRID------GKTNAEALRAINQPPLAVTTHPFDTRR 354 NFEVR VTP F+ Y+Q R G EAL +I + P A +T PF T R Sbjct 242 NFEVRAVTPEKFEQYIQARKSVEEGGKGMNTGEALASIGESPTATSTSPFYTDR 295 >gi|296139256|ref|YP_003646499.1| cytochrome C oxidase subunit II [Tsukamurella paurometabola DSM 20162] gi|296027390|gb|ADG78160.1| cytochrome c oxidase subunit II [Tsukamurella paurometabola DSM 20162] Length=366 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 178/346 (52%), Positives = 229/346 (67%), Gaps = 13/346 (3%) Query 22 GGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEAHLNRELWIGAVIASLA 81 GGPA ++L +AA L +SGCS E + GWPEG+TPEA LW +V+A+LA Sbjct 9 GGPASWRKRLVVAAGLVVGMFAMSGCSADEVMRFGWPEGVTPEAREMTTLWSWSVVAALA 68 Query 82 VGVIVWGLIFWSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEK 141 +GV+VW L FW+ FHRKK + PRQ YN+PLEL+ T +PFLII+VLFYFTV+VQ K Sbjct 69 MGVLVWALTFWTITFHRKKADSPDFPRQTAYNVPLELLYTAVPFLIIAVLFYFTVIVQTK 128 Query 142 MLQIAKDPEVVIDITSFQWNWKFGYQRV--NFKDGTLTYD-------GADPERKRAMVSK 192 + ++ +P V +D+T+FQWNW+F Y+ + N KDG G P+ K+ Sbjct 129 VEKLEDNPAVTVDVTAFQWNWRFAYREITENGKDGGTPIKLERPNPYGQQPDLKKLNEEA 188 Query 193 PEGKDKYGEELVGPVRGLN----TEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMA 248 + K + GE P RG N E R YL F VE G+S EIPVLVLP+G RIEF +A Sbjct 189 AKEKAETGEIEHQPERGPNHGRFQEIRDYLKFSTVEVQGSSAEIPVLVLPTGARIEFVLA 248 Query 249 SADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNF 308 SADV+H+F+VP+F FKRDVMPNP N+S N FQI EI ++G FVG CAEMCG YHSMMNF Sbjct 249 SADVVHSFYVPQFAFKRDVMPNPKENHSQNRFQITEIERSGDFVGRCAEMCGDYHSMMNF 308 Query 309 EVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRR 354 E+R V+P F Y++ R DGK NA AL +I + ++ +T PFDTRR Sbjct 309 EIRAVSPEKFTQYIKARQDGKDNATALESIGESGVSTSTAPFDTRR 354 >gi|319951011|ref|ZP_08024878.1| cytochrome c oxidase subunit II [Dietzia cinnamea P4] gi|319435320|gb|EFV90573.1| cytochrome c oxidase subunit II [Dietzia cinnamea P4] Length=350 Score = 338 bits (867), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 167/341 (49%), Positives = 230/341 (68%), Gaps = 21/341 (6%) Query 40 LAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFW 92 + + +SGCS W++ + G+P G+TPE RE W G VI SL VG VWGLIFW Sbjct 1 MGLLLSGCSLHTDNKWWNQTINFGFPTGVTPEGVAIREFWTGTVITSLIVGFFVWGLIFW 60 Query 93 S-AVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEV 151 S A + ++KN + E PRQ YN+PLEL+ T +PF+IISVLFYFTVV Q K+L + + EV Sbjct 61 SMAAYRKRKNDNGEFPRQTAYNVPLELIYTAVPFVIISVLFYFTVVTQNKVLDLRPEEEV 120 Query 152 --VIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKR----AMVSKPEGKDKYGEE--- 202 +D+T++QWNWKFGY +V+ ++ DG + E +R A V E ++ G E Sbjct 121 GVKVDVTAYQWNWKFGYNKVDVAGASIE-DGTNYEAQRQAEEAGVLSDEAREALGHEGEP 179 Query 203 -LVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEF 261 GP+ G ED++YL+++ +ET+GTS E+PVLVLP+ RIEF++ASADVIH+FW+PEF Sbjct 180 AAGGPIHGRLAEDKSYLHYNNIETVGTSEEVPVLVLPTDTRIEFRLASADVIHSFWIPEF 239 Query 262 LFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAY 321 ++K DVMP+P N +++FQIEEI + GAFVG CAEMCG YH+MMNFE+R V+P F Y Sbjct 240 IYKLDVMPHPGKNQQLSMFQIEEIEREGAFVGRCAEMCGIYHAMMNFELRAVSPEAFADY 299 Query 322 LQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRRGELAPQ 360 ++ R TNAEAL +I + P +++T PF T R + Q Sbjct 300 IEFRQANPTATNAEALESIGEEPYSISTAPFKTGRSDTRDQ 340 >gi|227488499|ref|ZP_03918815.1| cytochrome C oxidase precursor [Corynebacterium glucuronolyticum ATCC 51867] gi|227543104|ref|ZP_03973153.1| cytochrome C oxidase precursor [Corynebacterium glucuronolyticum ATCC 51866] gi|227091393|gb|EEI26705.1| cytochrome C oxidase precursor [Corynebacterium glucuronolyticum ATCC 51867] gi|227181092|gb|EEI62064.1| cytochrome C oxidase precursor [Corynebacterium glucuronolyticum ATCC 51866] Length=368 Score = 331 bits (848), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 172/351 (50%), Positives = 226/351 (65%), Gaps = 27/351 (7%) Query 31 LALAAMLGALAVTVSGCSWS-------EALGIGWPEGITPEAHLNRELWIGAVIASLAVG 83 + LA MLGA + ++GC + + L +GWPEGITPEA W+ + + +G Sbjct 1 MLLAGMLGASGLALAGCDVTPPGGAVGKFLRMGWPEGITPEATEVGNFWVWVWVTAWTIG 60 Query 84 VIVWGLIFWSAVFHR----KKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVVVQ 139 +I+W L+ W+ F+ KK ELP+Q YN+PLE+VLT+IP I+SVLF+FTV Q Sbjct 61 IIMWALMLWNVFFNTAKRAKKAGKGELPKQLQYNIPLEIVLTIIPITIVSVLFFFTVQAQ 120 Query 140 EKMLQIAKDPEVVIDITSFQWNWKFGYQRV--NFKDGTLTYDGADPERKRAMVSKPEGKD 197 +++ + K+P+V +DIT FQWNWKFGY V + Y G D R +A +D Sbjct 121 DQVNALDKNPKVTVDITGFQWNWKFGYANVAADLSPTGQDYVGTDEARTKAAEESAYERD 180 Query 198 K----------YGEELV--GPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEF 245 GEE GPV G + +DR+YL+F+K+ET+G S E+PVLVLPS +EF Sbjct 181 ADGNIKTKHLPNGEEYQWGGPVHGKSRDDRSYLHFNKIETVGASNEVPVLVLPSQTPLEF 240 Query 246 QMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSM 305 ++ASADV H+FWVPEFLFKRDV NP ANNSVN FQIE+I + GAFVG CAEMCGTYH+M Sbjct 241 RLASADVSHSFWVPEFLFKRDVYANPEANNSVNRFQIEKIEEEGAFVGRCAEMCGTYHAM 300 Query 306 MNFEVRVVTPNDFKAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRR 354 MNFEVRVV+P FK YL+ R N+EAL+AI + P + +T PF T R Sbjct 301 MNFEVRVVSPEKFKQYLEYRTANPEAPNSEALKAIGEDPYSTSTRPFLTER 351 >gi|237785307|ref|YP_002906012.1| cytochrome c oxidase subunit II [Corynebacterium kroppenstedtii DSM 44385] gi|237758219|gb|ACR17469.1| cytochrome c oxidase subunit II [Corynebacterium kroppenstedtii DSM 44385] Length=371 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 173/351 (50%), Positives = 230/351 (66%), Gaps = 27/351 (7%) Query 29 RQLALAAMLGALAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVIASLA 81 R+L LA +L A +SGCS + + L G P+GITPEA W+ +A+ Sbjct 11 RKLGLAGVLAAGGYLLSGCSVAPPDNGFFKLLRFGVPDGITPEAKEIGNFWVWIWVAAWI 70 Query 82 VGVIVWGLIFWSAVFHR----KKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVV 137 VG+I+WGL+F+S+ R +K + E PRQ YN+PLELVLT +P +I+ V+F+FTV Sbjct 71 VGIIMWGLMFYSSFAFRAKRKEKKGEKEFPRQTQYNIPLELVLTTVPIIIVMVIFFFTVQ 130 Query 138 VQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTL----TYDGADPERKRAM--VS 191 ++K+ + KDP+V +D+T+FQWNWKFGY V DG+L TY+G D + A Sbjct 131 TEDKVTAMDKDPKVKVDVTAFQWNWKFGYNEV---DGSLMGGNTYEGRDDSAQAAADGTK 187 Query 192 KPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASAD 251 K E + E P+ G + D +YLNFDK+ET+GT+ E+PVLVLPS I+F +ASAD Sbjct 188 KIESSSRGEEGASNPIHGNSKSDLSYLNFDKIETVGTTDEVPVLVLPSQTAIQFDLASAD 247 Query 252 VIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVR 311 VIH+FWVPEFLFKRD P+P AN S FQIE+I K GAFVG CAEMCGTYH+MMNFE+R Sbjct 248 VIHSFWVPEFLFKRDAFPHPEANKSNRKFQIEKIDKEGAFVGRCAEMCGTYHAMMNFEIR 307 Query 312 VVTPNDFKAYLQQRID--GKTNAEALRAINQPPLAVTTHPF-----DTRRG 355 VV+P+ F+ Y+ R D +NA+AL+AI + P A +THPF DTR Sbjct 308 VVSPDKFRDYMNFRKDNPSASNADALKAIGEQPYATSTHPFLPGREDTREA 358 >gi|311741497|ref|ZP_07715321.1| cytochrome c oxidase, subunit II [Corynebacterium pseudogenitalium ATCC 33035] gi|311303667|gb|EFQ79746.1| cytochrome c oxidase, subunit II [Corynebacterium pseudogenitalium ATCC 33035] Length=357 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 174/318 (55%), Positives = 214/318 (68%), Gaps = 22/318 (6%) Query 53 LGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFH-----RKKNTDTELP 107 LG GWP+GITPEA WI +A+ VG I+WGL F +A+F KK+ E P Sbjct 41 LGFGWPKGITPEAEAMYNFWIWVWVAAWIVGFIMWGL-FLTAIFRWSAKKAKKDGKGEFP 99 Query 108 RQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQ 167 RQ YN+PLE+VLT++P LII LF+FTV Q+K+ + KDP+VV+D+T+FQWNWKFGY Sbjct 100 RQIQYNVPLEMVLTIVPILIIMGLFFFTVQTQQKVTALDKDPKVVVDVTAFQWNWKFGYA 159 Query 168 RVNFKDGTLTYDGADPERK---RAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVE 224 N +G YDGAD ER+ PEG D P+ G + D +YLN++K+E Sbjct 160 E-NHVNGE-NYDGADKERQAEAEKTAHDPEGVDN-----PNPIHGKSMGDLSYLNYNKIE 212 Query 225 TLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEE 284 T+GT+ E+PVLVLPS IEF++AS DV HAFWVPEFLFKRDV +P AN FQ+E+ Sbjct 213 TVGTTEEVPVLVLPSDTAIEFRLASGDVSHAFWVPEFLFKRDVYAHPEANAQERSFQVEK 272 Query 285 ITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDG--KTNAEALRAINQPP 342 I K GAFVG CAEMCGTYHSMMNFE+RVV+P DF YL+ R D TNAEAL I Q P Sbjct 273 IEKQGAFVGRCAEMCGTYHSMMNFEIRVVSPEDFNTYLKFREDNPEATNAEALEEIGQDP 332 Query 343 LAVTTHPF----DTRRGE 356 AVTTHPF DT +G+ Sbjct 333 YAVTTHPFSGERDTAKGD 350 >gi|255325374|ref|ZP_05366480.1| putative cytochrome C oxidase, subunit II [Corynebacterium tuberculostearicum SK141] gi|255297939|gb|EET77250.1| putative cytochrome C oxidase, subunit II [Corynebacterium tuberculostearicum SK141] Length=357 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 174/318 (55%), Positives = 214/318 (68%), Gaps = 22/318 (6%) Query 53 LGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFH-----RKKNTDTELP 107 LG GWP+GITPEA WI +A+ VG I+WGL F +A+F KK+ E P Sbjct 41 LGFGWPKGITPEAEAMYNFWIWVWVAAWIVGFIMWGL-FLTAIFRWSAKKAKKDGKGEFP 99 Query 108 RQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQ 167 RQ YN+PLE+VLT++P LII LF+FTV Q+K+ + KDP+VV+D+T+FQWNWKFGY Sbjct 100 RQIQYNVPLEMVLTIVPILIIMGLFFFTVQTQQKVTALDKDPKVVVDVTAFQWNWKFGYA 159 Query 168 RVNFKDGTLTYDGADPERK---RAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVE 224 N +G YDGAD ER+ PEG D P+ G + D +YLN++K+E Sbjct 160 E-NHVNGE-NYDGADKERQAEAEKTAHDPEGVDN-----PNPIHGKSMGDLSYLNYNKIE 212 Query 225 TLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEE 284 T+GT+ E+PVLVLPS IEF++AS DV HAFWVPEFLFKRDV +P AN FQ+E+ Sbjct 213 TVGTTEEVPVLVLPSDTAIEFRLASGDVSHAFWVPEFLFKRDVYAHPEANAQERSFQVEK 272 Query 285 ITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDG--KTNAEALRAINQPP 342 I K GAFVG CAEMCGTYHSMMNFE+RVV+P DF YL+ R D TNAEAL I Q P Sbjct 273 IEKQGAFVGRCAEMCGTYHSMMNFEIRVVSPEDFNTYLKFREDNPDATNAEALEEIGQDP 332 Query 343 LAVTTHPF----DTRRGE 356 AVTTHPF DT +G+ Sbjct 333 YAVTTHPFSGERDTAKGD 350 >gi|172040919|ref|YP_001800633.1| cytochrome c oxidase subunit II [Corynebacterium urealyticum DSM 7109] gi|171852223|emb|CAQ05199.1| cytochrome c oxidase subunit II [Corynebacterium urealyticum DSM 7109] Length=367 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 163/342 (48%), Positives = 227/342 (67%), Gaps = 17/342 (4%) Query 29 RQLALAAMLGALAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVIASLA 81 R++A+A LG + ++GC+ + AL +GWP GITPEA W+ + + Sbjct 11 RRIAMAGTLGLSGLALAGCNVAPPENGFFHALRMGWPMGITPEAEQMGNYWVWVWVTAWI 70 Query 82 VGVIVWGLIF-----WSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTV 136 +G+I+W L+F +S+ ++ + E PRQ GYN+PLELVLT +P LI+ VLF+F V Sbjct 71 IGIIMWALMFFVMGRYSSKARSRRGDNEEFPRQTGYNVPLELVLTTVPVLIVMVLFFFNV 130 Query 137 VVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKD-GTLTYDGADPE-RKRAMVSKPE 194 Q+ + + KDP+V +D+T +QWNWKFGY +N + G Y+G D E ++RA SK E Sbjct 131 QTQDSVTALDKDPKVKVDVTGYQWNWKFGYGEINGELLGGQDYEGVDKEAQQRAEDSKYE 190 Query 195 GKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIH 254 + VGP+ G + ED +YLNF+K+ET+G++ E+PVLV+PS IEF +ASADV H Sbjct 191 IRSNTNHG-VGPIHGRSKEDYSYLNFNKIETVGSTDEVPVLVVPSNTAIEFNLASADVAH 249 Query 255 AFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVT 314 +FW+PEFLFKRDV P+P AN S FQI EI + GAFVG CAEMCGTYHSMMNFE+RVV+ Sbjct 250 SFWIPEFLFKRDVFPHPEANQSERRFQISEIKEEGAFVGRCAEMCGTYHSMMNFELRVVS 309 Query 315 PNDFKAYLQQRIDGKT--NAEALRAINQPPLAVTTHPFDTRR 354 P F Y++ R D N+EAL++I + P + +THPF + R Sbjct 310 PEKFADYIKFRQDNPEAPNSEALKSIGEAPYSTSTHPFVSDR 351 >gi|306836523|ref|ZP_07469494.1| cytochrome c oxidase, subunit II [Corynebacterium accolens ATCC 49726] gi|304567613|gb|EFM43207.1| cytochrome c oxidase, subunit II [Corynebacterium accolens ATCC 49726] Length=438 Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 166/314 (53%), Positives = 212/314 (68%), Gaps = 22/314 (7%) Query 53 LGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFH-----RKKNTDTELP 107 LG GWP+G+TPEA WI +A+ VG ++WGL F +A+F K++ E P Sbjct 122 LGFGWPKGVTPEAEAMYNFWIWVWVAAWIVGFVMWGL-FLTAIFRWSAKKAKRDGKGEFP 180 Query 108 RQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGY- 166 RQ YN+PLE+VLT++P LII LF+FTV Q+K+ + KDP+V +D+T+FQWNWKFGY Sbjct 181 RQTQYNVPLEMVLTIVPILIIMTLFFFTVQTQQKVTALDKDPKVTVDVTAFQWNWKFGYA 240 Query 167 -QRVNFKDGTLTYDGADPERK---RAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDK 222 RVN ++ Y+GAD R+ PEG D P+ G + D +YLN++K Sbjct 241 ENRVNGEN----YNGADEARQAEAEKTAHDPEGVDN-----PNPIHGKSKGDLSYLNYNK 291 Query 223 VETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQI 282 +ET+G++ E+PVLVLPS IEF++ASADV HAFWVPEFLFKRDV +P AN FQI Sbjct 292 IETVGSTEEVPVLVLPSDTAIEFRLASADVSHAFWVPEFLFKRDVYAHPEANAQERSFQI 351 Query 283 EEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYL--QQRIDGKTNAEALRAINQ 340 E I K GAFVG CAEMCGTYHSMMNFE+RVV+P DF AY+ +++ TNAEAL+ I Q Sbjct 352 ESIDKQGAFVGRCAEMCGTYHSMMNFEIRVVSPEDFNAYMDFREKNPNATNAEALKEIGQ 411 Query 341 PPLAVTTHPFDTRR 354 P AVTTHPF R Sbjct 412 DPYAVTTHPFSGER 425 >gi|300858845|ref|YP_003783828.1| cytochrome C oxidase subunit II [Corynebacterium pseudotuberculosis FRC41] gi|300686299|gb|ADK29221.1| cytochrome C oxidase subunit II [Corynebacterium pseudotuberculosis FRC41] gi|302206553|gb|ADL10895.1| Cytochrome c oxidase subunit II [Corynebacterium pseudotuberculosis C231] gi|302331108|gb|ADL21302.1| Cytochrome c oxidase subunit II [Corynebacterium pseudotuberculosis 1002] gi|308276795|gb|ADO26694.1| Cytochrome c oxidase subunit 2 [Corynebacterium pseudotuberculosis I19] gi|341825236|gb|AEK92757.1| Cytochrome c oxidase subunit II [Corynebacterium pseudotuberculosis PAT10] Length=361 Score = 325 bits (834), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 170/350 (49%), Positives = 222/350 (64%), Gaps = 29/350 (8%) Query 26 RGL-RQLALAAMLGALAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVI 77 RG+ R+ L +G +T++GC +AL GWPEGITPEA W+ + Sbjct 7 RGIGRKALLGGAIGFGGLTLAGCDVDAPGGVLGKALAFGWPEGITPEATSMYNFWVWVWV 66 Query 78 ASLAVGVIVWGLIF-----WSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLF 132 A+ +G I+WGL WSA +K D E PRQ YN+PLELVLT+IP +I+ LF Sbjct 67 AAWIIGFIMWGLFIYGMFAWSAKRAKKAGKD-EFPRQTQYNIPLELVLTIIPIVIVMGLF 125 Query 133 YFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRV--NFKDGTLTYDGADPERKRAMV 190 +FTV Q+K+ + KDP+V +D+T++QWNWKFGY + + Y G D R+ A Sbjct 126 FFTVQTQDKVTAMDKDPKVTVDVTAYQWNWKFGYSDIAADLSPTGAEYKGVDDARQAAAE 185 Query 191 SK---PEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQM 247 + P GK+ P+ G++ D +YL+F+K+ETLGTS EIPVLVLPS I+F + Sbjct 186 ASKVDPSGKN--------PINGMSKTDTSYLHFNKIETLGTSEEIPVLVLPSDTAIQFDL 237 Query 248 ASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMN 307 ASADV HAFWVPEFLFKRDV +P N FQIE+I KTGAFVG CAEMCGTYH+MMN Sbjct 238 ASADVSHAFWVPEFLFKRDVYNHPEQNKQQRRFQIEKIEKTGAFVGRCAEMCGTYHAMMN 297 Query 308 FEVRVVTPNDFKAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRRG 355 FE+RVVTP FK Y+ R TN++AL++I + P A TTHPF++ R Sbjct 298 FEIRVVTPEKFKQYISFRNSNPQATNSDALKSIGEEPYATTTHPFNSERA 347 >gi|227503248|ref|ZP_03933297.1| cytochrome C oxidase precursor [Corynebacterium accolens ATCC 49725] gi|227075751|gb|EEI13714.1| cytochrome C oxidase precursor [Corynebacterium accolens ATCC 49725] Length=357 Score = 325 bits (834), Expect = 6e-87, Method: Compositional matrix adjust. Identities = 166/314 (53%), Positives = 212/314 (68%), Gaps = 22/314 (7%) Query 53 LGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFH-----RKKNTDTELP 107 LG GWP+G+TPEA WI +A+ VG ++WGL F +A+F K++ E P Sbjct 41 LGFGWPKGVTPEAEAMYNFWIWVWVAAWIVGFVMWGL-FLTAIFRWSAKKAKRDGKGEFP 99 Query 108 RQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGY- 166 RQ YN+PLE+VLT++P LII LF+FTV Q+K+ + KDP+V +D+T+FQWNWKFGY Sbjct 100 RQTQYNVPLEMVLTIVPILIIMTLFFFTVQTQQKVTALDKDPKVTVDVTAFQWNWKFGYA 159 Query 167 -QRVNFKDGTLTYDGADPERK---RAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDK 222 RVN ++ Y+GAD R+ PEG D P+ G + D +YLN++K Sbjct 160 ENRVNGEN----YNGADEARQAEAEKTAHDPEGVDN-----PNPIHGKSKGDLSYLNYNK 210 Query 223 VETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQI 282 +ET+G++ E+PVLVLPS IEF++ASADV HAFWVPEFLFKRDV +P AN FQI Sbjct 211 IETVGSTEEVPVLVLPSDTAIEFRLASADVSHAFWVPEFLFKRDVYAHPEANAQERSFQI 270 Query 283 EEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYL--QQRIDGKTNAEALRAINQ 340 E I K GAFVG CAEMCGTYHSMMNFE+RVV+P DF AY+ +++ TNAEAL+ I Q Sbjct 271 ESIDKQGAFVGRCAEMCGTYHSMMNFEIRVVSPEDFNAYMDFREKNPNATNAEALKEIGQ 330 Query 341 PPLAVTTHPFDTRR 354 P AVTTHPF R Sbjct 331 DPYAVTTHPFSGER 344 >gi|68535791|ref|YP_250496.1| cytochrome c oxidase subunit II [Corynebacterium jeikeium K411] gi|68263390|emb|CAI36878.1| cytochrome c oxidase subunit II [Corynebacterium jeikeium K411] Length=369 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 166/343 (49%), Positives = 233/343 (68%), Gaps = 17/343 (4%) Query 29 RQLALAAMLGALAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVIASLA 81 R++ LA +LG + +SGC+ + L +GWP+GITPE+ LW+ + + Sbjct 11 RRIGLAGVLGLAGLVLSGCTVAPPENGFFNFLRMGWPKGITPESKEMGNLWVWVWVVAWI 70 Query 82 VGVIVWGLIF----WSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVV 137 +G+I+W L+F S+ +K + E PRQ GYN+PLELVLT +P LI+ LF+F V Sbjct 71 IGLIMWVLLFVNMGRSSAKKAEKRGEDEFPRQTGYNVPLELVLTTLPVLIVCGLFFFNVQ 130 Query 138 VQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFK-DGTLTYDGADPE-RKRAMVSK-PE 194 Q++ + KDP+VV+D+T +QWNWKFGY V + +G Y G D E + RA SK PE Sbjct 131 AQDRATALDKDPKVVVDVTGYQWNWKFGYHEVAAELNGGQEYKGVDKEAQARAEESKKPE 190 Query 195 GK-DKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVI 253 K DK+G ++ GP+ G + +D +YLN++K+ET+GT+ EIPVLV+PSG IEF +ASADV+ Sbjct 191 EKLDKHGHQVPGPIHGKSKDDLSYLNYNKIETVGTTQEIPVLVVPSGTPIEFNLASADVV 250 Query 254 HAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVV 313 H+FW+PEFLFKRDV P+P N S FQ+E I + GAFVG CAEMCGTYH+MM+FE+RVV Sbjct 251 HSFWIPEFLFKRDVFPHPSENRSERRFQVESIDEEGAFVGRCAEMCGTYHAMMSFELRVV 310 Query 314 TPNDFKAYLQQRIDGKT--NAEALRAINQPPLAVTTHPFDTRR 354 +P F+ Y++ R D N+EAL+AI + A +THPF++ R Sbjct 311 SPEKFEQYIKFRQDNPEAPNSEALKAIGEEGYATSTHPFESDR 353 >gi|337291152|ref|YP_004630173.1| cytochrome C oxidase subunit II [Corynebacterium ulcerans BR-AD22] gi|334697263|gb|AEG82060.1| cytochrome C oxidase subunit II [Corynebacterium ulcerans 809] gi|334699458|gb|AEG84254.1| cytochrome C oxidase subunit II [Corynebacterium ulcerans BR-AD22] Length=361 Score = 324 bits (831), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 169/350 (49%), Positives = 221/350 (64%), Gaps = 29/350 (8%) Query 26 RGL-RQLALAAMLGALAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVI 77 RG+ R+ L +G +T++GC +AL GWPEG+TPEA W+ + Sbjct 7 RGIGRKALLGGAIGFGGLTLAGCDVDAPGGVLGKALAFGWPEGVTPEATSMYNFWVWVWV 66 Query 78 ASLAVGVIVWGLIF-----WSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLF 132 A+ +G I+WGL WSA +K D E PRQ YN+PLELVLT+IP +I+ LF Sbjct 67 AAWIIGFIMWGLFIYGMFAWSAKRAKKAGKD-EFPRQTQYNIPLELVLTIIPIVIVMGLF 125 Query 133 YFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRV--NFKDGTLTYDGADPERKRAMV 190 +FTV Q+K+ + KDP+V +D+T++QWNWKFGY + Y G D R+ A Sbjct 126 FFTVQTQDKVTAMDKDPKVTVDVTAYQWNWKFGYSDIAAELSPTGAEYKGVDEARQAAAE 185 Query 191 SK---PEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQM 247 + P GK+ P+ G++ D +YL+F+K+ETLGTS EIPVLVLPS I+F + Sbjct 186 ASKVDPNGKN--------PINGMSKTDTSYLHFNKIETLGTSEEIPVLVLPSDTAIQFDL 237 Query 248 ASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMN 307 ASADV HAFWVPEFLFKRDV +P N FQIE+I KTGAFVG CAEMCGTYH+MMN Sbjct 238 ASADVSHAFWVPEFLFKRDVYNHPEQNKQQRRFQIEKIEKTGAFVGRCAEMCGTYHAMMN 297 Query 308 FEVRVVTPNDFKAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRRG 355 FE+RVVTP FK Y+ R TN++AL++I + P A TTHPF++ R Sbjct 298 FEIRVVTPEKFKQYISFRNSNPQATNSDALKSIGEEPYATTTHPFNSERA 347 >gi|296393476|ref|YP_003658360.1| cytochrome C oxidase subunit II [Segniliparus rotundus DSM 44985] gi|296180623|gb|ADG97529.1| cytochrome c oxidase subunit II [Segniliparus rotundus DSM 44985] Length=366 Score = 320 bits (819), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 168/355 (48%), Positives = 224/355 (64%), Gaps = 7/355 (1%) Query 6 PGRLQRLSQCRPQRGSGGPARGLRQLALAAMLGALAVTVSGCSWSEALGIGWPEGITPEA 65 P R Q+ + +P+ P R+L +L A +SGCS + GWP G+TP+A Sbjct 7 PSRRQKGRELKPELR---PQLDFRRLRWPVLLSLSAFGLSGCSVRDDFRFGWPHGVTPQA 63 Query 66 HLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRK---KNTDTELPRQFGYNMPLELVLTV 122 + W + +A+L VGVIVW +FW+ F RK K E PRQ GYN LE++ T+ Sbjct 64 RAMGDFWAWSCVAALVVGVIVWVAMFWTMFFDRKSRLKPGAPEFPRQTGYNAVLEIICTI 123 Query 123 IPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGA- 181 +P +I++ LFY+TVV Q + + +P VV+D+T+F+WNWKFGY +V +YDG Sbjct 124 LPTVIVAGLFYYTVVTQNYIEKKVSNPNVVVDVTAFRWNWKFGYNKVENVGPLASYDGHL 183 Query 182 DPERKRAMVSKPEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGK 241 D + EG++ G++ PV G ED +YL FDK+ET+GT TE PVLVLP+ K Sbjct 184 DNTVGGKGYREGEGEEGEGKKWPLPVNGRAAEDLSYLAFDKIETVGTDTETPVLVLPTDK 243 Query 242 RIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGT 301 +EF++AS DV+H+FWV +FLFKRDV PNP N + NVFQI +I GAFVG CAE+CGT Sbjct 244 IVEFRLASRDVVHSFWVIDFLFKRDVFPNPKENETDNVFQITKIDHEGAFVGRCAELCGT 303 Query 302 YHSMMNFEVRVVTPNDFKAYLQQRIDGKTNAEALRAINQPPLAVTTHPFDTRRGE 356 YHSMMNFEVR VTP F YL+ R GK+NA+AL +I + PLA TT P R E Sbjct 304 YHSMMNFEVRAVTPQKFAKYLEARKAGKSNADALASIGEAPLAKTTRPDPVRVAE 358 >gi|38234204|ref|NP_939971.1| putative cytochrome C oxidase [Corynebacterium diphtheriae NCTC 13129] gi|62899965|sp|Q6NG98.1|COX2_CORDI RecName: Full=Cytochrome c oxidase subunit 2; AltName: Full=Cytochrome aa3 subunit 2; AltName: Full=Cytochrome c oxidase polypeptide II; AltName: Full=Oxidase aa(3) subunit 2; Flags: Precursor gi|38200466|emb|CAE50154.1| Putative cytochrome C oxidase precursor [Corynebacterium diphtheriae] Length=362 Score = 319 bits (817), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 163/345 (48%), Positives = 221/345 (65%), Gaps = 22/345 (6%) Query 28 LRQLALAAMLGALAVTVSGCS-------WSEALGIGWPEGITPEAHLNRELWIGAVIASL 80 +R+ L +++G + ++GC ALG GWP+GITPEA W+ + + Sbjct 10 VRKALLGSVIGFGGLALAGCDVEAPGGPLGTALGFGWPKGITPEATSMYNFWVWVWVTAW 69 Query 81 AVGVIVWGLIF-----WSAVFHRKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFT 135 +G I+WGL WSA +K D E PRQ YN+PLELVLT++P +I+ LF+FT Sbjct 70 IIGFIMWGLFIYGMFSWSAKRAKKAGKD-EFPRQTQYNIPLELVLTIVPIIIVMALFFFT 128 Query 136 VVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGAD---PERKRAMVSK 192 V Q+K+ + KDP+V +D+T +QWNWKFGY +V G L+ G+D + KR ++ Sbjct 129 VQTQDKVTAMDKDPKVTVDVTGYQWNWKFGYAKVA---GELSPTGSDYVGTDEKRQEAAE 185 Query 193 PEGKDKYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADV 252 D+ G+ P+ G + D +YL+F+K+ETLGTS EIPVLVLPS +EF +ASADV Sbjct 186 KTKFDQGGDN-PNPINGRSKTDTSYLHFNKIETLGTSEEIPVLVLPSNTPVEFDLASADV 244 Query 253 IHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRV 312 HAFWVPEFLFKRD +P N FQIE+I K GAFVG CAEMCGTYH+MMNFE+RV Sbjct 245 SHAFWVPEFLFKRDAYNHPEQNKQQRRFQIEKIEKEGAFVGRCAEMCGTYHAMMNFEIRV 304 Query 313 VTPNDFKAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRRG 355 V+P F YL+ R D TN++AL++I + P A +THPF++ R Sbjct 305 VSPEKFAQYLKFRNDNPQATNSDALKSIGEAPYATSTHPFNSERA 349 >gi|227504661|ref|ZP_03934710.1| cytochrome C oxidase precursor [Corynebacterium striatum ATCC 6940] gi|227198748|gb|EEI78796.1| cytochrome C oxidase precursor [Corynebacterium striatum ATCC 6940] Length=358 Score = 318 bits (814), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 167/339 (50%), Positives = 220/339 (65%), Gaps = 18/339 (5%) Query 29 RQLALAAMLGALAVTVSGC------SWSEALGIGWPEGITPEAHLNRELWIGAVIASLAV 82 R+ LA + ++GC + LG GWP+GITPEA WI +A+ + Sbjct 11 RKAGLAGAIALGGFALAGCDVKAPTAVENLLGFGWPKGITPEAESMYNFWIWVWVAAWII 70 Query 83 GVIVWGLIFWSAVFH-----RKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVV 137 G I+WGL F A+F+ +K+ E P+Q YN+PLE+VLT++P LII LF+FTV Sbjct 71 GFIMWGL-FLIAIFNWNAKKAEKDGKGEFPKQLQYNVPLEMVLTIVPILIIMGLFFFTVQ 129 Query 138 VQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFKDGTLTYDGADPERKRAMVSKPEGKD 197 Q+K+ + K+PEV +D+T++QWNWKFGY N DG Y+G D ERK+ +++ D Sbjct 130 AQQKVTALDKNPEVTVDVTAYQWNWKFGYAE-NKVDGQ-NYNGEDVERKK--LAEESAID 185 Query 198 KYGEELVGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADVIHAFW 257 G + P+ G + D +YLNF+K+ET+GT+ E+PVLVLPSG IEF++AS DV H+FW Sbjct 186 PEGVKNPNPIHGKSMGDLSYLNFNKIETVGTTEEVPVLVLPSGTPIEFRLASGDVSHSFW 245 Query 258 VPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPND 317 VPEFLFKRD +P AN FQIEEI + GAFVG CAEMCGTYH+MMNFE+RVV+ D Sbjct 246 VPEFLFKRDAYAHPEANAQERRFQIEEIAEEGAFVGRCAEMCGTYHAMMNFEIRVVSRED 305 Query 318 FKAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRR 354 F YL R TNAEAL I Q P AVTT PF+++R Sbjct 306 FNKYLTFREQNPEATNAEALEHIGQEPYAVTTSPFNSQR 344 >gi|260578121|ref|ZP_05846042.1| cytochrome c oxidase, subunit II [Corynebacterium jeikeium ATCC 43734] gi|258603760|gb|EEW17016.1| cytochrome c oxidase, subunit II [Corynebacterium jeikeium ATCC 43734] Length=326 Score = 315 bits (807), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 158/310 (51%), Positives = 217/310 (70%), Gaps = 10/310 (3%) Query 55 IGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIF----WSAVFHRKKNTDTELPRQF 110 +GWP+GITPE+ LW+ + + +G+I+W L+F S+ +K + E PRQ Sbjct 1 MGWPKGITPESKEMGNLWVWVWVVAWIIGLIMWVLLFVNMGRSSAKKAEKRGEDEFPRQT 60 Query 111 GYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVN 170 GYN+PLELVLT +P LI+ LF+F V Q++ + KDP+VV+D+T +QWNWKFGY V Sbjct 61 GYNVPLELVLTTLPVLIVCGLFFFNVQAQDRATALDKDPKVVVDVTGYQWNWKFGYHEVA 120 Query 171 FK-DGTLTYDGADPE-RKRAMVSK-PEGK-DKYGEELVGPVRGLNTEDRTYLNFDKVETL 226 + +G Y G D E + RA SK PE K DK+G ++ GP+ G + +D +YLN++K+ET+ Sbjct 121 AELNGGQEYKGVDKEAQARAEESKKPEEKLDKHGHQVPGPIHGKSKDDLSYLNYNKIETV 180 Query 227 GTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEIT 286 GT+ EIPVLV+PSG IEF +ASADV+H+FW+PEFLFKRDV P+P N S FQ+E I Sbjct 181 GTTQEIPVLVVPSGTPIEFNLASADVVHSFWIPEFLFKRDVFPHPSENRSERRFQVESID 240 Query 287 KTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRIDGKT--NAEALRAINQPPLA 344 + GAFVG CAEMCGTYH+MMNFE+RVV+P F+ Y++ R D N+EAL+AI + A Sbjct 241 EEGAFVGRCAEMCGTYHAMMNFELRVVSPEKFEQYIKFRQDNPEAPNSEALKAIGEEGYA 300 Query 345 VTTHPFDTRR 354 +THPF++ R Sbjct 301 TSTHPFESDR 310 >gi|227548882|ref|ZP_03978931.1| cytochrome-c oxidase [Corynebacterium lipophiloflavum DSM 44291] gi|227079103|gb|EEI17066.1| cytochrome-c oxidase [Corynebacterium lipophiloflavum DSM 44291] Length=364 Score = 315 bits (806), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 165/344 (48%), Positives = 223/344 (65%), Gaps = 24/344 (6%) Query 29 RQLALAAMLGALAVTVSGC------SWSEALGIGWPEGITPEAHLNRELWIGAVIASLAV 82 +++A+A L + ++GC + + L +GWP+ ITPE W+ +A+ + Sbjct 11 KKVAVAGSLLLGSFALAGCEVAPPAALANVLDMGWPDPITPEGVQMYNFWVWVWVAAWTI 70 Query 83 GVIVWGLIFWSAVFH-----RKKNTDTELPRQFGYNMPLELVLTVIPFLIISVLFYFTVV 137 G+I+W L F AVF + K TD E P+Q YN+PLEL LT++P +I+ VLF+FTV Sbjct 71 GIIMWAL-FLVAVFKWNAKAQAKKTDDEFPKQLQYNVPLELGLTIVPIIIVFVLFFFTVQ 129 Query 138 VQEKMLQIAKDPEVVIDITSFQWNWKFGYQRVNFK---DGTLTYDGADPERKRAMVSKPE 194 Q K + + KDPEV +D+T+FQWNWKFGY ++ + G L Y+GAD +R+ + E Sbjct 130 AQTKAVALDKDPEVTVDVTAFQWNWKFGYAQIGEELSPTGQL-YNGADEQRQ----ALAE 184 Query 195 GKDKYGEEL--VGPVRGLNTEDRTYLNFDKVETLGTSTEIPVLVLPSGKRIEFQMASADV 252 EEL P+ G +T D +YLN++ +ET GT+ EIPVLVLP+ IEF++AS DV Sbjct 185 DTKYEAEELPNANPIHGTSTGDMSYLNYNVIETTGTTDEIPVLVLPTETPIEFRLASGDV 244 Query 253 IHAFWVPEFLFKRDVMPNPVANNSVNVFQIEEITKTGAFVGHCAEMCGTYHSMMNFEVRV 312 HAFWVPEFLFKRDV +P +N FQIE I + GAFVG CAEMCGTYH+MMNFEVR Sbjct 245 SHAFWVPEFLFKRDVYAHPESNQQQRSFQIERIDREGAFVGRCAEMCGTYHAMMNFEVRA 304 Query 313 VTPNDFKAYLQQRIDG--KTNAEALRAINQPPLAVTTHPFDTRR 354 V+P DF+AY+Q R D TNA+AL +I Q P A TT PF++ R Sbjct 305 VSPEDFRAYIQFRNDNPDATNAQALESIGQDPYATTTRPFNSDR 348 >gi|334563270|ref|ZP_08516261.1| cytochrome c oxidase subunit II [Corynebacterium bovis DSM 20582] Length=338 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 162/308 (53%), Positives = 206/308 (67%), Gaps = 9/308 (2%) Query 52 ALGIGWPEGITPEAHLNRELWIGAVIASLAVGVIVWGLIFWSAVFHRKKNTDT----ELP 107 AL GWP+GITPEA W+ +A+ +G+++WGL+ ++ V K + E P Sbjct 11 ALRFGWPKGITPEATQMGNFWVWVWVAAWIIGIVMWGLLIFAVVNFSAKRAEKKGKGEFP 70 Query 108 RQFGYNMPLELVLTVIPFLIISVLFYFTVVVQEKMLQIAKDPEVVIDITSFQWNWKFGYQ 167 RQ GYN+PLELVLT IP LI+ VLF+FTV Q + KDP+V +D+T FQWNWKFGY Sbjct 71 RQTGYNVPLELVLTTIPILIVMVLFFFTVQTQGTVTAQDKDPKVKVDVTGFQWNWKFGYG 130 Query 168 RVNFK-DGTLTYDGADPE-RKRAMVSKPEGKDKYGE-ELVGPVRGLNTEDRTYLNFDKVE 224 V+ +G TY G D E + +A S+ E + E E VGP+ G +D +YLNFDK+E Sbjct 131 EVDASLNGGTTYQGVDREAQDKAEGSQFESTTRGEEGESVGPIHGRAKDDYSYLNFDKIE 190 Query 225 TLGTSTEIPVLVLPSGKRIEFQMASADVIHAFWVPEFLFKRDVMPNPVANNSVNVFQIEE 284 TLG++ E+PVLVLPS IEF +ASADVIH+FWVPEFLFKRDV P+P AN S FQI Sbjct 191 TLGSTEEVPVLVLPSNTPIEFNLASADVIHSFWVPEFLFKRDVFPHPEANQSERRFQISS 250 Query 285 ITKTGAFVGHCAEMCGTYHSMMNFEVRVVTPNDFKAYLQQRID--GKTNAEALRAINQPP 342 I + GAFVG CAEMCGTYH+MMNFEVRVV+P F +Y+Q R N+EAL +I + Sbjct 251 IDQEGAFVGRCAEMCGTYHAMMNFEVRVVSPEKFTSYIQYREQHPKAPNSEALESIGEKG 310 Query 343 LAVTTHPF 350 A +T PF Sbjct 311 FATSTKPF 318 Lambda K H 0.321 0.138 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 682094012100 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40