BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2203

Length=230
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609340|ref|NP_216719.1|  hypothetical protein Rv2203 [Mycoba...   468    3e-130
gi|183983238|ref|YP_001851529.1|  hypothetical protein MMAR_3247 ...   328    3e-88 
gi|240168264|ref|ZP_04746923.1|  hypothetical protein MkanA1_0305...   308    3e-82 
gi|118618845|ref|YP_907177.1|  hypothetical protein MUL_3560 [Myc...   306    2e-81 
gi|342859914|ref|ZP_08716567.1|  hypothetical protein MCOL_13583 ...   284    9e-75 
gi|41408041|ref|NP_960877.1|  hypothetical protein MAP1943 [Mycob...   275    3e-72 
gi|15827395|ref|NP_301658.1|  hypothetical protein ML0872 [Mycoba...   263    2e-68 
gi|296166075|ref|ZP_06848521.1|  conserved hypothetical protein [...   263    2e-68 
gi|254823306|ref|ZP_05228307.1|  hypothetical protein MintA_25484...   258    6e-67 
gi|108800267|ref|YP_640464.1|  hypothetical protein Mmcs_3301 [My...   177    1e-42 
gi|126435890|ref|YP_001071581.1|  hypothetical protein Mjls_3312 ...   172    3e-41 
gi|118468790|ref|YP_888548.1|  hypothetical protein MSMEG_4271 [M...   151    8e-35 
gi|120404538|ref|YP_954367.1|  hypothetical protein Mvan_3567 [My...   151    9e-35 
gi|315443879|ref|YP_004076758.1|  hypothetical protein Mspyr1_227...   150    1e-34 
gi|145223533|ref|YP_001134211.1|  hypothetical protein Mflv_2946 ...   149    2e-34 
gi|169629045|ref|YP_001702694.1|  hypothetical protein MAB_1958c ...  98.2    8e-19 
gi|134113779|ref|XP_774474.1|  hypothetical protein CNBG1200 [Cry...  36.2    4.2   
gi|58269800|ref|XP_572056.1|  hypothetical protein CNG03570 [Cryp...  35.8    5.2   


>gi|15609340|ref|NP_216719.1| hypothetical protein Rv2203 [Mycobacterium tuberculosis H37Rv]
 gi|15841694|ref|NP_336731.1| hypothetical protein MT2259 [Mycobacterium tuberculosis CDC1551]
 gi|31793382|ref|NP_855875.1| hypothetical protein Mb2226 [Mycobacterium bovis AF2122/97]
 82 more sequence titles
 Length=230

 Score =  468 bits (1204),  Expect = 3e-130, Method: Compositional matrix adjust.
 Identities = 230/230 (100%), Positives = 230/230 (100%), Gaps = 0/230 (0%)

Query  1    MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG  60
            MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG
Sbjct  1    MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG  60

Query  61   VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGY  120
            VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGY
Sbjct  61   VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGY  120

Query  121  LNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWS  180
            LNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWS
Sbjct  121  LNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWS  180

Query  181  QYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            QYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY
Sbjct  181  QYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230


>gi|183983238|ref|YP_001851529.1| hypothetical protein MMAR_3247 [Mycobacterium marinum M]
 gi|183176564|gb|ACC41674.1| conserved protein [Mycobacterium marinum M]
Length=229

 Score =  328 bits (842),  Expect = 3e-88, Method: Compositional matrix adjust.
 Identities = 174/231 (76%), Positives = 192/231 (84%), Gaps = 3/231 (1%)

Query  1    MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG  60
            M GPH  NP V T GP PYPE   +EP  L+YPHDLG AEPAF   PAD     P +YPG
Sbjct  1    MAGPHPSNPAVSTEGPMPYPENGPNEP--LEYPHDLGGAEPAFGTPPADGPPRLPVSYPG  58

Query  61   VPPQVS-YPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQG  119
            +PP    Y  RR +RLLIG ++ALALV A+TA I+YGVRTNG N++GT SEG AKTAIQG
Sbjct  59   LPPAPGGYRNRRPRRLLIGTLLALALVGALTATIVYGVRTNGTNSSGTLSEGAAKTAIQG  118

Query  120  YLNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYW  179
            YLNALE+RDVD IVRNALCGI+DGV+DKRSDQALAKLSSDAFRKQFSQ +VTSIDKIVYW
Sbjct  119  YLNALEHRDVDVIVRNALCGIYDGVKDKRSDQALAKLSSDAFRKQFSQADVTSIDKIVYW  178

Query  180  SQYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            SQYQAQVLFTMQVTPA GGPP+GQVQGIAQLLFQRGQ++VCSYVLRTAG Y
Sbjct  179  SQYQAQVLFTMQVTPATGGPPKGQVQGIAQLLFQRGQIMVCSYVLRTAGQY  229


>gi|240168264|ref|ZP_04746923.1| hypothetical protein MkanA1_03057 [Mycobacterium kansasii ATCC 
12478]
Length=222

 Score =  308 bits (790),  Expect = 3e-82, Method: Compositional matrix adjust.
 Identities = 168/233 (73%), Positives = 187/233 (81%), Gaps = 14/233 (6%)

Query  1    MPGPHSPNPGVGTNGPA---PYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAA  57
            M G H PNP VGT G     PYP     EP  L+YPH+    +  FAP PA       A 
Sbjct  1    MAGQHPPNPAVGTEGAREVRPYPPTGPDEP--LEYPHEAADRQTGFAPAPA-------AG  51

Query  58   YPGVPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAI  117
            YPG+P   SYP+RR KRLLIG ++ALAL+ A+TAAI+YGVRTNG NT GTF+E  AKTAI
Sbjct  52   YPGMPG--SYPRRRPKRLLIGTLLALALIGALTAAIVYGVRTNGTNTGGTFTEASAKTAI  109

Query  118  QGYLNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIV  177
            QGYLNALE+RDVD IVRNALCGI+DGV+D+RSDQALAKLSSDAFRKQFSQ +VTSIDK+V
Sbjct  110  QGYLNALEHRDVDVIVRNALCGIYDGVKDRRSDQALAKLSSDAFRKQFSQADVTSIDKVV  169

Query  178  YWSQYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            YWSQYQAQVLFTMQVTPA GGPP+GQVQGIAQLLFQRGQ+LVCSYVLRTAG Y
Sbjct  170  YWSQYQAQVLFTMQVTPATGGPPKGQVQGIAQLLFQRGQILVCSYVLRTAGQY  222


>gi|118618845|ref|YP_907177.1| hypothetical protein MUL_3560 [Mycobacterium ulcerans Agy99]
 gi|118570955|gb|ABL05706.1| conserved protein [Mycobacterium ulcerans Agy99]
Length=213

 Score =  306 bits (783),  Expect = 2e-81, Method: Compositional matrix adjust.
 Identities = 163/214 (77%), Positives = 181/214 (85%), Gaps = 3/214 (1%)

Query  18   PYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPGVPPQ-VSYPKRRHKRLL  76
            PYPE   +EP  L+YPHDLG AEPAF   PAD     P +YPG+PP    Y  RR KRLL
Sbjct  2    PYPENGPNEP--LEYPHDLGGAEPAFGVPPADGPPRLPVSYPGLPPAPGGYRNRRPKRLL  59

Query  77   IGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVDTIVRNA  136
            IG ++ALALV A+TA I+YGVRTNG N++GT SEG AKTAIQGYLNALE+RDVD IVRNA
Sbjct  60   IGTLLALALVGALTATIVYGVRTNGTNSSGTLSEGAAKTAIQGYLNALEHRDVDVIVRNA  119

Query  137  LCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQVTPAA  196
            LCGI++GV+DKRSDQALAKLSSDAFRKQFSQ +VTSID+IVYWSQYQAQVLFTMQVTPA 
Sbjct  120  LCGIYNGVKDKRSDQALAKLSSDAFRKQFSQADVTSIDEIVYWSQYQAQVLFTMQVTPAT  179

Query  197  GGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            GGPP GQVQGIAQLLFQRGQ++VCSYVLRTAG Y
Sbjct  180  GGPPNGQVQGIAQLLFQRGQIMVCSYVLRTAGQY  213


>gi|342859914|ref|ZP_08716567.1| hypothetical protein MCOL_13583 [Mycobacterium colombiense CECT 
3035]
 gi|342133046|gb|EGT86266.1| hypothetical protein MCOL_13583 [Mycobacterium colombiense CECT 
3035]
Length=225

 Score =  284 bits (726),  Expect = 9e-75, Method: Compositional matrix adjust.
 Identities = 146/230 (64%), Positives = 173/230 (76%), Gaps = 5/230 (2%)

Query  1    MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG  60
            M GPHSPN  VG  GP P   PS   P  L++P D  +  P FA       A    A   
Sbjct  1    MAGPHSPNHTVGGEGPTP---PSESPP--LEFPDDPNSGGPGFASAAQAGPATANYAGQP  55

Query  61   VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGY  120
              P    P+R  + L++G+ +A+ALV+ +T AI+YGVRTNGANT  TFSEG A+TAIQGY
Sbjct  56   PAPVPYPPQRSKRGLIVGVALAIALVAVLTVAIVYGVRTNGANTGATFSEGAARTAIQGY  115

Query  121  LNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWS  180
            L+ALE+RD+D I RNALCG++DGV+DKRSDQALAKLSSDAFRKQFS+VE+TSIDKIVY S
Sbjct  116  LDALEHRDIDEIARNALCGLYDGVQDKRSDQALAKLSSDAFRKQFSEVELTSIDKIVYLS  175

Query  181  QYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            QYQAQ LFTM+V+P +GGP  GQVQGIAQLLFQRGQ++VCSYVLRT GSY
Sbjct  176  QYQAQALFTMRVSPVSGGPMHGQVQGIAQLLFQRGQIMVCSYVLRTGGSY  225


>gi|41408041|ref|NP_960877.1| hypothetical protein MAP1943 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118466864|ref|YP_881492.1| hypothetical protein MAV_2288 [Mycobacterium avium 104]
 gi|254774960|ref|ZP_05216476.1| hypothetical protein MaviaA2_09849 [Mycobacterium avium subsp. 
avium ATCC 25291]
 gi|41396396|gb|AAS04260.1| hypothetical protein MAP_1943 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|118168151|gb|ABK69048.1| conserved hypothetical protein [Mycobacterium avium 104]
 gi|336461927|gb|EGO40780.1| hypothetical protein MAPs_25980 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=225

 Score =  275 bits (704),  Expect = 3e-72, Method: Compositional matrix adjust.
 Identities = 148/230 (65%), Positives = 176/230 (77%), Gaps = 5/230 (2%)

Query  1    MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG  60
            M GPHSPN  VG  GP P   PS  +P  L++P    A +  +A  P         A P 
Sbjct  1    MAGPHSPNHTVGGQGPTP---PSESQP--LEFPDHPNAGDTGYAAAPQAPPGSANYAGPP  55

Query  61   VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGY  120
              P    P+R  +RL++G+ +A+ALV+ MT AI+YGVRTNGANT  TFSEG AKTAIQGY
Sbjct  56   PAPAPYPPRRSKRRLIVGLALAVALVAVMTVAIVYGVRTNGANTGATFSEGAAKTAIQGY  115

Query  121  LNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWS  180
            L+ALE+RD+D I RNALCG++DGV+DKRSDQALAKLSSDAFRKQFS+V+VTSIDKIVY S
Sbjct  116  LDALEHRDIDEIARNALCGLYDGVQDKRSDQALAKLSSDAFRKQFSEVQVTSIDKIVYLS  175

Query  181  QYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            QYQAQ LF+M+V+P +GGP RGQVQGIAQLLFQRGQ++VCSYVLRT GSY
Sbjct  176  QYQAQALFSMRVSPVSGGPARGQVQGIAQLLFQRGQIMVCSYVLRTGGSY  225


>gi|15827395|ref|NP_301658.1| hypothetical protein ML0872 [Mycobacterium leprae TN]
 gi|221229872|ref|YP_002503288.1| hypothetical protein MLBr_00872 [Mycobacterium leprae Br4923]
 gi|13092945|emb|CAC31253.1| putative membrane protein [Mycobacterium leprae]
 gi|219932979|emb|CAR70967.1| putative membrane protein [Mycobacterium leprae Br4923]
Length=171

 Score =  263 bits (672),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 123/170 (73%), Positives = 148/170 (88%), Gaps = 0/170 (0%)

Query  61   VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGY  120
            +PP VSYP+RR KRL+I ++VA+ALV+AMTA IIYGVRTNG+ T GTFSE  AKTAI+ Y
Sbjct  2    LPPAVSYPRRRSKRLIISVLVAIALVAAMTAVIIYGVRTNGSKTGGTFSEVTAKTAIEDY  61

Query  121  LNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWS  180
            L ALE  +++TI RNALCG++D VRD+R DQALA+LSSDAFRKQFSQVE+TSID+IVYWS
Sbjct  62   LKALEQSNINTIARNALCGMYDSVRDQRPDQALAQLSSDAFRKQFSQVELTSIDQIVYWS  121

Query  181  QYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
             YQAQVLFTM+ +PA GGP R Q+QGIAQLL++R QVLVCSY+LRTA S+
Sbjct  122  PYQAQVLFTMRTSPATGGPKRRQIQGIAQLLYRRNQVLVCSYMLRTADSH  171


>gi|296166075|ref|ZP_06848521.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
 gi|295898570|gb|EFG78130.1| conserved hypothetical protein [Mycobacterium parascrofulaceum 
ATCC BAA-614]
Length=218

 Score =  263 bits (672),  Expect = 2e-68, Method: Compositional matrix adjust.
 Identities = 152/231 (66%), Positives = 181/231 (79%), Gaps = 14/231 (6%)

Query  1    MPGPHSPNPGVGTNGPAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG  60
            M GPHSPN  VG  GP+    P+  E Q L++P D  A +     GPA+ A  PP     
Sbjct  1    MAGPHSPNHTVGGGGPSGPQPPA--EAQPLEFPTDPRAVDV----GPANYAGQPP-----  49

Query  61   VPPQVSYPKRRHKR-LLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQG  119
              P + YP+RR KR L++GI++A+ALV+A+T AI+YGVRTNGANT  TFSEG AKTAIQG
Sbjct  50   --PSMPYPQRRSKRRLVVGILLAVALVAALTVAIVYGVRTNGANTGATFSEGAAKTAIQG  107

Query  120  YLNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYW  179
            YL+AL++RD+  I RNALCG++D VRDKRSDQALAKLSSDAFRKQFSQVEVTS+DKIVY 
Sbjct  108  YLDALDHRDIPEIERNALCGMYDAVRDKRSDQALAKLSSDAFRKQFSQVEVTSVDKIVYL  167

Query  180  SQYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            SQYQAQ LFTM+  PAAGGP RG++QGIAQLLFQRG+++VCSYVLRT GSY
Sbjct  168  SQYQAQALFTMKAAPAAGGPLRGELQGIAQLLFQRGEIMVCSYVLRTGGSY  218


>gi|254823306|ref|ZP_05228307.1| hypothetical protein MintA_25484 [Mycobacterium intracellulare 
ATCC 13950]
Length=152

 Score =  258 bits (658),  Expect = 6e-67, Method: Compositional matrix adjust.
 Identities = 119/152 (79%), Positives = 138/152 (91%), Gaps = 0/152 (0%)

Query  79   IVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVDTIVRNALC  138
            + +A+ALV+ MT AI+YGVRTNGANT  TFSEG AKTAIQGYL+ALE+RD++ I RNALC
Sbjct  1    MALAIALVAVMTVAIVYGVRTNGANTGTTFSEGAAKTAIQGYLDALEHRDINEIARNALC  60

Query  139  GIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQVTPAAGG  198
            G++D V+DKRSDQALAKLSSDAFRKQFS+VE+TSIDKIVY SQYQAQ LFTM+V+P +GG
Sbjct  61   GLYDAVQDKRSDQALAKLSSDAFRKQFSEVEITSIDKIVYLSQYQAQALFTMRVSPVSGG  120

Query  199  PPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            P RGQVQGIAQLLFQRGQ++VCSYVLRT GSY
Sbjct  121  PMRGQVQGIAQLLFQRGQIMVCSYVLRTGGSY  152


>gi|108800267|ref|YP_640464.1| hypothetical protein Mmcs_3301 [Mycobacterium sp. MCS]
 gi|119869395|ref|YP_939347.1| hypothetical protein Mkms_3363 [Mycobacterium sp. KMS]
 gi|108770686|gb|ABG09408.1| putative conserved membrane protein [Mycobacterium sp. MCS]
 gi|119695484|gb|ABL92557.1| putative conserved membrane protein [Mycobacterium sp. KMS]
Length=212

 Score =  177 bits (448),  Expect = 1e-42, Method: Compositional matrix adjust.
 Identities = 107/205 (53%), Positives = 134/205 (66%), Gaps = 17/205 (8%)

Query  33   PHDLGAAEPAFAPGPADDAALPPAAYPG-VPPQVSYPKRRHKRLLIGIVVALALVSAMTA  91
            PH  GA +P   PGP       P+AYPG +PP V YPKR  KRLL   V    +V+ +  
Sbjct  18   PHQ-GAPQPY--PGPV------PSAYPGMLPPPVQYPKRGRKRLLW-AVAVAVVVATLVG  67

Query  92   AIIYGVRTNGA-NTAGTFSEGPAKTAIQGYLNALENRDVDTIVRNALCGIHDGVRDKRSD  150
             +I+  R +GA   AG  ++  A+TAIQGYL+AL N D + I R+ALCG+ D V++KRSD
Sbjct  68   VVIFATRDDGAPQAAGPLTDASARTAIQGYLDALSNGDDEEIARHALCGLFDAVKEKRSD  127

Query  151  QALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQVTPAAGG-----PPRGQVQ  205
             ALA L+ DAFRKQFS+ EVTSID IV WS +QAQVLFTM+V PA G      PP  + Q
Sbjct  128  LALAGLAGDAFRKQFSRAEVTSIDTIVPWSSHQAQVLFTMRVAPARGSARGQQPPNEEEQ  187

Query  206  GIAQLLFQRGQVLVCSYVLRTAGSY  230
             +AQLL +  +VLVCSY+LRT   Y
Sbjct  188  AVAQLLIRDNEVLVCSYLLRTGSQY  212


>gi|126435890|ref|YP_001071581.1| hypothetical protein Mjls_3312 [Mycobacterium sp. JLS]
 gi|126235690|gb|ABN99090.1| putative conserved membrane protein [Mycobacterium sp. JLS]
Length=212

 Score =  172 bits (437),  Expect = 3e-41, Method: Compositional matrix adjust.
 Identities = 108/205 (53%), Positives = 135/205 (66%), Gaps = 17/205 (8%)

Query  33   PHDLGAAEPAFAPGPADDAALPPAAYPG-VPPQVSYPKRRHKRLLIGIVVALALVSAMTA  91
            PH  GA +P   PGP       P+AYPG +PP V YPKR  KRLL   VV   +V+ +  
Sbjct  18   PHQ-GAPQPY--PGPV------PSAYPGMLPPPVQYPKRGRKRLLW-AVVVAVVVATLVG  67

Query  92   AIIYGVRTNGA-NTAGTFSEGPAKTAIQGYLNALENRDVDTIVRNALCGIHDGVRDKRSD  150
             +I+  R +GA   AG  ++  A+TAIQGYL+AL N D + I R+ALCG+ D V++KRSD
Sbjct  68   VVIFATRDDGAPQAAGPLTDASARTAIQGYLDALSNGDDEEIARHALCGLFDAVKEKRSD  127

Query  151  QALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQVTPAAGG-----PPRGQVQ  205
             ALA L+ DAFRKQFS+ EVTSID IV WS +QAQVLFTM+V PA G      PP  + Q
Sbjct  128  LALAGLAGDAFRKQFSRAEVTSIDTIVPWSSHQAQVLFTMRVAPARGSARGQQPPNEEEQ  187

Query  206  GIAQLLFQRGQVLVCSYVLRTAGSY  230
             +AQLL +  +VLVCSY+LRT   Y
Sbjct  188  AVAQLLIRDNEVLVCSYLLRTGSQY  212


>gi|118468790|ref|YP_888548.1| hypothetical protein MSMEG_4271 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118170077|gb|ABK70973.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=217

 Score =  151 bits (381),  Expect = 8e-35, Method: Compositional matrix adjust.
 Identities = 91/186 (49%), Positives = 125/186 (68%), Gaps = 11/186 (5%)

Query  55   PAAYPG-VPPQVSYPKRRHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPA  113
            P+AYPG +PP V YPKRR    ++  V+A+A+++ +  A++   R++G+ + G  +E  A
Sbjct  33   PSAYPGMLPPPVPYPKRRRWPKVLAAVLAVAVLAGVVTAVVQVTRSSGSES-GVVTETQA  91

Query  114  KTAIQGYLNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSI  173
            + AIQ YL+AL + D +T+ R+ +CG+ D VRD+++D A+A L+ D FRKQF  VEVTSI
Sbjct  92   RDAIQEYLSALIDADDETVARHTMCGLFDAVRDRKADLAVASLAGDTFRKQFGNVEVTSI  151

Query  174  DKIVYWSQYQAQVLFTMQVTPAAGG-----PPRGQVQGIAQLLFQR----GQVLVCSYVL  224
            DKIV WS  QAQVLFTM+V PA        PP  + QG+AQLL  +      VLVCSYVL
Sbjct  152  DKIVPWSTTQAQVLFTMRVAPARSSSRGQRPPAEEQQGVAQLLVDKTDGGDDVLVCSYVL  211

Query  225  RTAGSY  230
            RT G Y
Sbjct  212  RTGGQY  217


>gi|120404538|ref|YP_954367.1| hypothetical protein Mvan_3567 [Mycobacterium vanbaalenii PYR-1]
 gi|119957356|gb|ABM14361.1| putative conserved membrane protein [Mycobacterium vanbaalenii 
PYR-1]
Length=213

 Score =  151 bits (381),  Expect = 9e-35, Method: Compositional matrix adjust.
 Identities = 102/220 (47%), Positives = 126/220 (58%), Gaps = 31/220 (14%)

Query  18   PYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG-VPPQVSYPKRRHKRLL  76
             YPEP  + PQ   YP  LG                  A YPG +PP V YPKRR   ++
Sbjct  18   MYPEP--YPPQT--YPP-LG------------------ATYPGTLPPPVQYPKRRRPWII  54

Query  77   IGIVVALALVSAMTAAIIY--GVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVDTIVR  134
              +     L      A +   G R   A  +G  +E  A+TAIQ YL+AL N DV+T+ R
Sbjct  55   AVVAAVAVLAVVGVVAAVALTGSRDEAA-PSGALTEASAQTAIQDYLDALTNADVETVAR  113

Query  135  NALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQVTP  194
            + LCG++D V ++RSD ALA LSSDAFRKQ+   EVTSIDK+V  S  QAQVLFTM+VTP
Sbjct  114  HTLCGLYDAVNERRSDLALANLSSDAFRKQYESAEVTSIDKMVLSSPSQAQVLFTMRVTP  173

Query  195  AAGG----PPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            A G     P +   Q +AQLL    +VLVCSY+ RTAG Y
Sbjct  174  AGGSSRNQPQQADEQAVAQLLSIDDEVLVCSYLPRTAGQY  213


>gi|315443879|ref|YP_004076758.1| hypothetical protein Mspyr1_22780 [Mycobacterium sp. Spyr1]
 gi|315262182|gb|ADT98923.1| hypothetical protein Mspyr1_22780 [Mycobacterium sp. Spyr1]
Length=206

 Score =  150 bits (380),  Expect = 1e-34, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 129/223 (58%), Gaps = 27/223 (12%)

Query  16   PAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG-VPPQVSYPKRRHKR  74
            P PYP+  S+ P A  YP           PGP          YPG +PP V YPKRR + 
Sbjct  3    PEPYPQ-QSYPPYAAPYPDG--------GPGPV---------YPGALPPPVQYPKRRRRP  44

Query  75   LLIGIVVALALVSA---MTAAIIYGVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVDT  131
             +I  V   A+V+    +T   +   R +   T GT +E  A+ AIQ YL+AL + D + 
Sbjct  45   WIIVAVALAAVVAVGAVITGVTLAAGREDQGAT-GTLTETSARAAIQDYLDALTDGDDER  103

Query  132  IVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQ  191
            + R+ LCG+ D V+++RSD ALA LSSDAFRKQ+   EVTSIDK+V  S  QAQVLFTM+
Sbjct  104  VARHTLCGLFDAVKERRSDLALANLSSDAFRKQYDSAEVTSIDKMVRSSPTQAQVLFTMR  163

Query  192  VTPAAG----GPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            V PA+G     P     Q +AQ+L    +VLVCSY+ RTAG Y
Sbjct  164  VVPASGSSRNAPQEADEQAVAQVLSIDDEVLVCSYLPRTAGQY  206


>gi|145223533|ref|YP_001134211.1| hypothetical protein Mflv_2946 [Mycobacterium gilvum PYR-GCK]
 gi|145216019|gb|ABP45423.1| hypothetical protein Mflv_2946 [Mycobacterium gilvum PYR-GCK]
Length=223

 Score =  149 bits (377),  Expect = 2e-34, Method: Compositional matrix adjust.
 Identities = 100/223 (45%), Positives = 128/223 (58%), Gaps = 27/223 (12%)

Query  16   PAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPG-VPPQVSYPKRRHKR  74
            P PYP+  S+ P A  YP           PGP          YPG +PP V YPKRR   
Sbjct  20   PEPYPQ-QSYPPYAAPYPDG--------GPGPV---------YPGALPPPVQYPKRRRSP  61

Query  75   LLIGIVVALALVSA---MTAAIIYGVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVDT  131
             +I  V   A+V+    +T   +   R +   T GT +E  A+ AIQ YL+AL + D + 
Sbjct  62   WIIVAVALAAVVAVGAVITGVTLAAGREDQGAT-GTLTETSARAAIQDYLDALTDGDDER  120

Query  132  IVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQAQVLFTMQ  191
            + R+ LCG+ D V+++RSD ALA LSSDAFRKQ+   EVTSIDK+V  S  QAQVLFTM+
Sbjct  121  VARHTLCGLFDAVKERRSDLALANLSSDAFRKQYDSAEVTSIDKMVRSSPTQAQVLFTMR  180

Query  192  VTPAAG----GPPRGQVQGIAQLLFQRGQVLVCSYVLRTAGSY  230
            V PA+G     P     Q +AQ+L    +VLVCSY+ RTAG Y
Sbjct  181  VVPASGSSRNAPQEADEQAVAQVLSIDDEVLVCSYLPRTAGQY  223


>gi|169629045|ref|YP_001702694.1| hypothetical protein MAB_1958c [Mycobacterium abscessus ATCC 
19977]
 gi|169241012|emb|CAM62040.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=180

 Score = 98.2 bits (243),  Expect = 8e-19, Method: Compositional matrix adjust.
 Identities = 51/122 (42%), Positives = 69/122 (57%), Gaps = 5/122 (4%)

Query  109  SEGPAKTAIQGYLNALENRDVDTIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQV  168
            SE   +  IQ YL+A+   D  T+ RNA CG++D VRDK +D  + + ++  F   F   
Sbjct  64   SEAKIEQTIQAYLDAMARLDTVTLARNAGCGLYDAVRDKDTDDTIVRANAQQFVATFGTA  123

Query  169  EVTSIDKIVYWSQYQAQVLFTMQVTPAAGGPPRGQVQGIAQLLFQRGQVLVCSYVLRTAG  228
             V SIDKIVY+SQYQ +VLFT         P     QG A+LL   G++ VCS  +R A 
Sbjct  124  TVKSIDKIVYFSQYQLKVLFTATSQKRKDAP-----QGQAELLLNEGKIYVCSAYMRGAN  178

Query  229  SY  230
            +Y
Sbjct  179  AY  180


>gi|134113779|ref|XP_774474.1| hypothetical protein CNBG1200 [Cryptococcus neoformans var. neoformans 
B-3501A]
 gi|50257112|gb|EAL19827.1| hypothetical protein CNBG1200 [Cryptococcus neoformans var. neoformans 
B-3501A]
Length=912

 Score = 36.2 bits (82),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 40/173 (24%), Positives = 63/173 (37%), Gaps = 38/173 (21%)

Query  16   PAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPGVPPQVSY-----PKR  70
            P+PY   +SH P    YP++    E + AP PA   + P A+ P  PP++       P  
Sbjct  389  PSPYRSHNSHTPHR--YPNEHHLHENSHAPSPAHTQSFPSASLPYAPPELLRAPPLGPSL  446

Query  71   RHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVD  130
                  +GIV+   L   +     Y  R       GT+ E P               ++ 
Sbjct  447  AQDIWAVGIVLHALLTGKLPFFDPYDPRLQMKILRGTWEEPP---------------NLG  491

Query  131  TIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQ  183
                  L G  DG R++R                ++ V+V   D ++ W + Q
Sbjct  492  KEWLECLKGCLDGDRERR----------------WTIVKVKQSDAVLGWKEVQ  528


>gi|58269800|ref|XP_572056.1| hypothetical protein CNG03570 [Cryptococcus neoformans var. neoformans 
JEC21]
 gi|57228292|gb|AAW44749.1| hypothetical protein CNG03570 [Cryptococcus neoformans var. neoformans 
JEC21]
Length=912

 Score = 35.8 bits (81),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 40/173 (24%), Positives = 63/173 (37%), Gaps = 38/173 (21%)

Query  16   PAPYPEPSSHEPQALDYPHDLGAAEPAFAPGPADDAALPPAAYPGVPPQVSY-----PKR  70
            P+PY   +SH P    YP++    E + AP PA   + P A+ P  PP++       P  
Sbjct  389  PSPYRSHNSHTPHR--YPNEHHLHENSHAPSPAHTQSFPSASLPYAPPELLRAPPLGPSL  446

Query  71   RHKRLLIGIVVALALVSAMTAAIIYGVRTNGANTAGTFSEGPAKTAIQGYLNALENRDVD  130
                  +GIV+   L   +     Y  R       GT+ E P               ++ 
Sbjct  447  AQDIWAVGIVLHALLTGRLPFFDPYDPRLQMKILRGTWEEPP---------------NLG  491

Query  131  TIVRNALCGIHDGVRDKRSDQALAKLSSDAFRKQFSQVEVTSIDKIVYWSQYQ  183
                  L G  DG R++R                ++ V+V   D ++ W + Q
Sbjct  492  KEWLECLKGCLDGDRERR----------------WTIVKVKQSDAVLGWKEVQ  528



Lambda     K      H
   0.317    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 300567788510


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40