BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2219A
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
gi|31793399|ref|NP_855892.1| hypothetical protein Mb2243c [Mycob... 261 2e-68
gi|15841711|ref|NP_336748.1| hypothetical protein MT2277 [Mycoba... 260 4e-68
gi|342857225|ref|ZP_08713881.1| RDD family protein, putative [My... 186 1e-45
gi|183983278|ref|YP_001851569.1| hypothetical protein MMAR_3288 ... 184 4e-45
gi|296166097|ref|ZP_06848542.1| integral membrane protein [Mycob... 182 1e-44
gi|118617033|ref|YP_905365.1| hypothetical protein MUL_1341 [Myc... 181 3e-44
gi|240168290|ref|ZP_04746949.1| hypothetical protein MkanA1_0319... 179 1e-43
gi|118462888|ref|YP_881472.1| RDD family protein, putative [Myco... 174 5e-42
gi|41408059|ref|NP_960895.1| hypothetical protein MAP1961c [Myco... 171 3e-41
gi|108800285|ref|YP_640482.1| RDD domain-containing protein [Myc... 163 7e-39
gi|333990323|ref|YP_004522937.1| hypothetical protein JDM601_168... 157 7e-37
gi|254820910|ref|ZP_05225911.1| RDD family protein, putative [My... 152 1e-35
gi|120404555|ref|YP_954384.1| RDD domain-containing protein [Myc... 145 2e-33
gi|169629022|ref|YP_001702671.1| hypothetical protein MAB_1934 [... 144 5e-33
gi|145223516|ref|YP_001134194.1| RDD domain-containing protein [... 144 5e-33
gi|118472470|ref|YP_888566.1| integral membrane protein [Mycobac... 140 5e-32
gi|336461820|gb|EGO40676.1| hypothetical protein MAPs_26560 [Myc... 140 8e-32
gi|54023636|ref|YP_117878.1| hypothetical protein nfa16680 [Noca... 120 7e-26
gi|111018169|ref|YP_701141.1| hypothetical protein RHA1_ro01156 ... 117 4e-25
gi|226360297|ref|YP_002778075.1| hypothetical protein ROP_08830 ... 117 7e-25
gi|262202971|ref|YP_003274179.1| RDD domain-containing protein [... 116 9e-25
gi|325677044|ref|ZP_08156715.1| RDD family domain protein [Rhodo... 116 1e-24
gi|312140210|ref|YP_004007546.1| integral membrane protein [Rhod... 116 1e-24
gi|317506327|ref|ZP_07964140.1| RDD family protein [Segniliparus... 115 2e-24
gi|343924146|ref|ZP_08763709.1| hypothetical protein GOALK_002_0... 109 1e-22
gi|334565151|ref|ZP_08518142.1| hypothetical protein CbovD2_1130... 108 3e-22
gi|226307109|ref|YP_002767069.1| hypothetical protein RER_36220 ... 108 4e-22
gi|229490246|ref|ZP_04384088.1| integral membrane protein [Rhodo... 107 6e-22
gi|319949776|ref|ZP_08023801.1| hypothetical protein ES5_09882 [... 107 8e-22
gi|227488478|ref|ZP_03918794.1| integral membrane protein [Coryn... 105 2e-21
gi|227543084|ref|ZP_03973133.1| integral membrane protein [Coryn... 105 2e-21
gi|340794085|ref|YP_004759548.1| hypothetical protein CVAR_1119 ... 104 4e-21
gi|25028659|ref|NP_738713.1| hypothetical protein CE2103 [Coryne... 100 8e-20
gi|259507720|ref|ZP_05750620.1| membrane protein [Corynebacteriu... 100 1e-19
gi|333918928|ref|YP_004492509.1| RDD domain-containing protein [... 97.8 4e-19
gi|225021861|ref|ZP_03711053.1| hypothetical protein CORMATOL_01... 97.8 5e-19
gi|296393242|ref|YP_003658126.1| RDD domain-containing protein [... 97.8 5e-19
gi|68535778|ref|YP_250483.1| hypothetical protein jk0703 [Coryne... 97.4 6e-19
gi|297194772|ref|ZP_06912170.1| integral membrane protein [Strep... 97.1 7e-19
gi|331698339|ref|YP_004334578.1| RDD domain-containing protein [... 96.7 1e-18
gi|260578134|ref|ZP_05846055.1| membrane protein [Corynebacteriu... 96.3 1e-18
gi|296139231|ref|YP_003646474.1| RDD domain-containing protein [... 95.9 2e-18
gi|291444116|ref|ZP_06583506.1| integral membrane protein [Strep... 95.9 2e-18
gi|182439109|ref|YP_001826828.1| hypothetical protein SGR_5316 [... 95.5 2e-18
gi|239987157|ref|ZP_04707821.1| hypothetical protein SrosN1_0762... 95.1 3e-18
gi|311741479|ref|ZP_07715303.1| RDD family domain protein [Coryn... 94.7 4e-18
gi|302534072|ref|ZP_07286414.1| integral membrane protein [Strep... 94.7 4e-18
gi|300858863|ref|YP_003783846.1| hypothetical protein cpfrc_0144... 94.7 4e-18
gi|326382487|ref|ZP_08204178.1| RDD domain containing protein [G... 94.0 7e-18
gi|337291175|ref|YP_004630196.1| hypothetical protein CULC22_015... 93.6 9e-18
>gi|31793399|ref|NP_855892.1| hypothetical protein Mb2243c [Mycobacterium bovis AF2122/97]
gi|57116957|ref|YP_177661.1| hypothetical protein Rv2219A [Mycobacterium tuberculosis H37Rv]
gi|121638101|ref|YP_978325.1| hypothetical protein BCG_2236c [Mycobacterium bovis BCG str.
Pasteur 1173P2]
78 more sequence titles
Length=140
Score = 261 bits (667), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS
Sbjct 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF
Sbjct 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
Query 121 TDSDGRGLHDRLTATAVVRR 140
TDSDGRGLHDRLTATAVVRR
Sbjct 121 TDSDGRGLHDRLTATAVVRR 140
>gi|15841711|ref|NP_336748.1| hypothetical protein MT2277 [Mycobacterium tuberculosis CDC1551]
gi|13881967|gb|AAK46562.1| conserved hypothetical protein [Mycobacterium tuberculosis CDC1551]
Length=164
Score = 260 bits (665), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 140/140 (100%), Positives = 140/140 (100%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS
Sbjct 25 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 84
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF
Sbjct 85 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 144
Query 121 TDSDGRGLHDRLTATAVVRR 140
TDSDGRGLHDRLTATAVVRR
Sbjct 145 TDSDGRGLHDRLTATAVVRR 164
>gi|342857225|ref|ZP_08713881.1| RDD family protein, putative [Mycobacterium colombiense CECT
3035]
gi|342134558|gb|EGT87724.1| RDD family protein, putative [Mycobacterium colombiense CECT
3035]
Length=139
Score = 186 bits (471), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/138 (72%), Positives = 110/138 (80%), Gaps = 0/138 (0%)
Query 3 AKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTV 62
A+SP YPG+ LG P +GPGSLAPMGRRL AL+IDWLI+YGLA L + FG S P L+T
Sbjct 2 AESPSAYPGEKLGFPQSGPGSLAPMGRRLGALMIDWLISYGLAALAMRFGWLSQPALATA 61
Query 63 VLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTD 122
VLVIW LLGV VRLFGFTPGQL L L VV V GR PVG+GR VVRG+L+G VVP LFTD
Sbjct 62 VLVIWYLLGVVFVRLFGFTPGQLALRLQVVTVDGRGPVGLGRAVVRGVLVGTVVPALFTD 121
Query 123 SDGRGLHDRLTATAVVRR 140
DGRG+ DRLTATAVVRR
Sbjct 122 FDGRGMQDRLTATAVVRR 139
>gi|183983278|ref|YP_001851569.1| hypothetical protein MMAR_3288 [Mycobacterium marinum M]
gi|183176604|gb|ACC41714.1| conserved membrane protein [Mycobacterium marinum M]
Length=140
Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 109/140 (78%), Positives = 117/140 (84%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MT +S YPGKTLG P TGPGSLA GRRLAAL +DWL+AYGLALLGV G W MLS
Sbjct 1 MTTESSTSYPGKTLGFPRTGPGSLAGTGRRLAALCVDWLLAYGLALLGVGVGAWPQAMLS 60
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
TVVLVIWLL+GV AVRLFGFTPGQLMLGL VV + GR PVG+GRL RGLLI LVVPPLF
Sbjct 61 TVVLVIWLLMGVLAVRLFGFTPGQLMLGLAVVRLDGRMPVGVGRLAGRGLLIALVVPPLF 120
Query 121 TDSDGRGLHDRLTATAVVRR 140
TD+DGRG+HDRLTATAVVRR
Sbjct 121 TDADGRGIHDRLTATAVVRR 140
>gi|296166097|ref|ZP_06848542.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
gi|295898506|gb|EFG78067.1| integral membrane protein [Mycobacterium parascrofulaceum ATCC
BAA-614]
Length=140
Score = 182 bits (462), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 98/140 (70%), Positives = 110/140 (79%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MT +S YPG+ LGLP+ GPGSLAPMGRRL AL+IDWLI+YGLA L + FG +S LS
Sbjct 1 MTPESRSAYPGERLGLPENGPGSLAPMGRRLGALMIDWLISYGLAALALRFGAFSEHTLS 60
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
T VL IW +LGV +VRLFGFTPGQL LGL VV V G+ VGI R VVRG+L+G VVP LF
Sbjct 61 TAVLAIWFVLGVVSVRLFGFTPGQLALGLRVVTVDGQGAVGIVRAVVRGVLVGTVVPALF 120
Query 121 TDSDGRGLHDRLTATAVVRR 140
TD DGRGL DRLTATAVVRR
Sbjct 121 TDWDGRGLQDRLTATAVVRR 140
>gi|118617033|ref|YP_905365.1| hypothetical protein MUL_1341 [Mycobacterium ulcerans Agy99]
gi|118569143|gb|ABL03894.1| conserved membrane protein [Mycobacterium ulcerans Agy99]
Length=140
Score = 181 bits (459), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 108/140 (78%), Positives = 116/140 (83%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MT +S YPGKTLG P TGPGSLA GRRLAAL +DWL+AYGLALLGV G W MLS
Sbjct 1 MTTESSTSYPGKTLGFPRTGPGSLAGTGRRLAALCVDWLLAYGLALLGVGVGAWPQAMLS 60
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
TVVLVIWLL+GV AVR FGFTPGQLMLGL VV + GR PVG+GRL RGLLI LVVPPLF
Sbjct 61 TVVLVIWLLMGVLAVRPFGFTPGQLMLGLAVVRLDGRMPVGVGRLAGRGLLIALVVPPLF 120
Query 121 TDSDGRGLHDRLTATAVVRR 140
TD+DGRG+HDRLTATAVVRR
Sbjct 121 TDADGRGIHDRLTATAVVRR 140
>gi|240168290|ref|ZP_04746949.1| hypothetical protein MkanA1_03197 [Mycobacterium kansasii ATCC
12478]
Length=139
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 114/140 (82%), Positives = 123/140 (88%), Gaps = 1/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MTA+S YPGKTLG P TGPG+LAPMGRRL AL IDWL+AYGLALLG+ G WS PMLS
Sbjct 1 MTAEST-GYPGKTLGFPRTGPGALAPMGRRLGALCIDWLVAYGLALLGLGVGAWSQPMLS 59
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
++VLVIWLLLGV AVRLFGFTPGQL+LGLVVVAV GR PVG+GRLV RGLLI LV+PPLF
Sbjct 60 SMVLVIWLLLGVIAVRLFGFTPGQLLLGLVVVAVDGRLPVGVGRLVARGLLIALVIPPLF 119
Query 121 TDSDGRGLHDRLTATAVVRR 140
TDSDGRGLHDRLT TAVVRR
Sbjct 120 TDSDGRGLHDRLTGTAVVRR 139
>gi|118462888|ref|YP_881472.1| RDD family protein, putative [Mycobacterium avium 104]
gi|254774939|ref|ZP_05216455.1| RDD family protein, putative [Mycobacterium avium subsp. avium
ATCC 25291]
gi|118164175|gb|ABK65072.1| RDD family protein, putative [Mycobacterium avium 104]
Length=140
Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/140 (70%), Positives = 108/140 (78%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MT +S YPG+ LGLP GPGSLAPMG RL AL+IDWLI+YGLA L + G +S L+
Sbjct 1 MTPESRSAYPGEKLGLPQRGPGSLAPMGPRLGALMIDWLISYGLAALAMRLGWFSASALA 60
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
T VLVIW LLGV +VRLFGFTPGQL+L L VV V GR VG GR VVRG+L+G VVP LF
Sbjct 61 TSVLVIWFLLGVVSVRLFGFTPGQLVLRLQVVTVDGRGLVGTGRAVVRGVLVGTVVPALF 120
Query 121 TDSDGRGLHDRLTATAVVRR 140
TD DGRGL DRLTATAVVRR
Sbjct 121 TDWDGRGLQDRLTATAVVRR 140
>gi|41408059|ref|NP_960895.1| hypothetical protein MAP1961c [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396414|gb|AAS04278.1| hypothetical protein MAP_1961c [Mycobacterium avium subsp. paratuberculosis
K-10]
Length=176
Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/140 (68%), Positives = 107/140 (77%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
MT +S YPG+ LGLP GP SLAPMG RL AL+IDWLI+YGLA L + G +S L+
Sbjct 37 MTPESRSAYPGENLGLPQRGPSSLAPMGPRLGALMIDWLISYGLAALAMRLGWFSASALA 96
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
T VLVIW +LGV +VRLFGFTPGQL+L L VV V GR VG GR VVRG+L+G VVP LF
Sbjct 97 TAVLVIWFVLGVVSVRLFGFTPGQLVLRLQVVTVDGRGLVGTGRAVVRGVLVGTVVPALF 156
Query 121 TDSDGRGLHDRLTATAVVRR 140
TD DGRGL DRLTATAVVRR
Sbjct 157 TDWDGRGLQDRLTATAVVRR 176
>gi|108800285|ref|YP_640482.1| RDD domain-containing protein [Mycobacterium sp. MCS]
gi|119869413|ref|YP_939365.1| RDD domain-containing protein [Mycobacterium sp. KMS]
gi|126435908|ref|YP_001071599.1| RDD domain-containing protein [Mycobacterium sp. JLS]
gi|108770704|gb|ABG09426.1| RDD domain containing protein [Mycobacterium sp. MCS]
gi|119695502|gb|ABL92575.1| RDD domain containing protein [Mycobacterium sp. KMS]
gi|126235708|gb|ABN99108.1| RDD domain containing protein [Mycobacterium sp. JLS]
Length=159
Score = 163 bits (413), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 82/133 (62%), Positives = 102/133 (77%), Gaps = 0/133 (0%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIW 67
+YPG+ LGLPD+GPGS+A GRR+AA+L+DW IAYGLA L + G+ S +STV+LVIW
Sbjct 27 EYPGQRLGLPDSGPGSMARFGRRVAAMLVDWFIAYGLAALAMTLGLISVGAMSTVILVIW 86
Query 68 LLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRG 127
++G +VRLF FTPGQ LGL+VV++ R VG GR +VRGL+I LV+P LFTD D RG
Sbjct 87 FVIGAVSVRLFRFTPGQYALGLMVVSMDDREHVGFGRALVRGLMIALVIPALFTDEDLRG 146
Query 128 LHDRLTATAVVRR 140
LHD T TAVVRR
Sbjct 147 LHDLATKTAVVRR 159
>gi|333990323|ref|YP_004522937.1| hypothetical protein JDM601_1683 [Mycobacterium sp. JDM601]
gi|333486291|gb|AEF35683.1| conserved hypothetical protein [Mycobacterium sp. JDM601]
Length=154
Score = 157 bits (396), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/136 (67%), Positives = 103/136 (76%), Gaps = 1/136 (0%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+ P PG+ LGLP TGPGSLA GRR L +DWL+AYGLA LGV G+ + P+L+T V
Sbjct 18 QPPEGAPGQDLGLPPTGPGSLASTGRRALGLAVDWLVAYGLAGLGVTLGLVTPPLLATAV 77
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
LVIWL+LGVAAVRLFGFTPGQ + GL VVAV G VG+ R VVRGL I LVVP LF D+
Sbjct 78 LVIWLVLGVAAVRLFGFTPGQYVCGLRVVAVDGTG-VGLVRAVVRGLSIALVVPALFIDA 136
Query 124 DGRGLHDRLTATAVVR 139
DGRGL DR TATAVVR
Sbjct 137 DGRGLQDRATATAVVR 152
>gi|254820910|ref|ZP_05225911.1| RDD family protein, putative [Mycobacterium intracellulare ATCC
13950]
Length=140
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/140 (68%), Positives = 104/140 (75%), Gaps = 0/140 (0%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLS 60
M +S YPG+ LGLP++GPGSLA MGRRL AL IDWLIA GLA L + G L+
Sbjct 1 MMPESRSAYPGEKLGLPESGPGSLARMGRRLGALTIDWLIALGLAALAMRLGWLPEGALA 60
Query 61 TVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLF 120
T LV+W +LGV +VRLFGFTPGQL LGL VV V GR VG GR VVRGLL+G VVP LF
Sbjct 61 TAELVVWFVLGVVSVRLFGFTPGQLALGLQVVTVDGRGLVGTGRAVVRGLLVGTVVPALF 120
Query 121 TDSDGRGLHDRLTATAVVRR 140
TD DGRGL DRLTATAVVRR
Sbjct 121 TDWDGRGLQDRLTATAVVRR 140
>gi|120404555|ref|YP_954384.1| RDD domain-containing protein [Mycobacterium vanbaalenii PYR-1]
gi|119957373|gb|ABM14378.1| RDD domain containing protein [Mycobacterium vanbaalenii PYR-1]
Length=155
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/137 (65%), Positives = 104/137 (76%), Gaps = 0/137 (0%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+ YPG+ LGLP+TGPGS+A GRR+AALL+DWL++YGLA L + FG S LST V
Sbjct 19 RQRSTYPGERLGLPETGPGSIARFGRRIAALLVDWLVSYGLAALAMTFGWVSLGALSTAV 78
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
LV+WL+L V +VRLFGFTPGQL LGL VV+V R VG GR + RGLLI LV+P LFTDS
Sbjct 79 LVVWLVLSVVSVRLFGFTPGQLALGLKVVSVDNRAFVGSGRALARGLLIALVIPALFTDS 138
Query 124 DGRGLHDRLTATAVVRR 140
D RGLHD T TAVVRR
Sbjct 139 DLRGLHDLATKTAVVRR 155
>gi|169629022|ref|YP_001702671.1| hypothetical protein MAB_1934 [Mycobacterium abscessus ATCC 19977]
gi|169240989|emb|CAM62017.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=154
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 81/131 (62%), Positives = 96/131 (74%), Gaps = 1/131 (0%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWL 68
YPG+ LGLP++GPGS AP+ RRL ALLIDWLIA GLALL V+ + S P LS+ L+ WL
Sbjct 23 YPGERLGLPESGPGSAAPLSRRLLALLIDWLIAGGLALLFVKGNLLS-PSLSSAQLLTWL 81
Query 69 LLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGL 128
+GV AVRL+ FTPGQ M GL V G +GIGR +R LLI L+VPPL TD DGRGL
Sbjct 82 GIGVLAVRLWRFTPGQYMAGLQVAPADGTDSIGIGRAFIRNLLIALIVPPLITDIDGRGL 141
Query 129 HDRLTATAVVR 139
HDR+T T V+R
Sbjct 142 HDRVTRTVVIR 152
>gi|145223516|ref|YP_001134194.1| RDD domain-containing protein [Mycobacterium gilvum PYR-GCK]
gi|315443862|ref|YP_004076741.1| hypothetical protein Mspyr1_22600 [Mycobacterium sp. Spyr1]
gi|145216002|gb|ABP45406.1| RDD domain containing protein [Mycobacterium gilvum PYR-GCK]
gi|315262165|gb|ADT98906.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=156
Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 86/139 (62%), Positives = 101/139 (73%), Gaps = 0/139 (0%)
Query 2 TAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLST 61
+ + YPG+ LGLP+ G GS+A GRR+AALL+DWL YGL L V FG S ST
Sbjct 18 SGQRASTYPGERLGLPEHGSGSIARFGRRIAALLVDWLTCYGLTALAVAFGWISVGFQST 77
Query 62 VVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFT 121
VL++WL+LGV +VRLFGFTPGQL+LGL V+AV R VG GR + RGLLI LV+P LFT
Sbjct 78 AVLLVWLVLGVVSVRLFGFTPGQLLLGLKVIAVDNRMHVGSGRALARGLLIALVIPALFT 137
Query 122 DSDGRGLHDRLTATAVVRR 140
DSD RGLHD T TAVVRR
Sbjct 138 DSDQRGLHDLATKTAVVRR 156
>gi|118472470|ref|YP_888566.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
gi|118173757|gb|ABK74653.1| integral membrane protein [Mycobacterium smegmatis str. MC2 155]
Length=157
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 85/132 (65%), Positives = 103/132 (79%), Gaps = 0/132 (0%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWL 68
YPG+ LGLP+ GPGS+A GRRL AL++DWLIAYGLA L + FGV S P+LST VLVIW+
Sbjct 26 YPGERLGLPEDGPGSIARTGRRLGALIVDWLIAYGLAALLMTFGVISFPLLSTAVLVIWM 85
Query 69 LLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGL 128
++G AVRLF FTPGQ +LGLVVV GR +GI R +R LLI L++PPL +DSD RGL
Sbjct 86 VIGTLAVRLFSFTPGQYVLGLVVVPADGRDGIGIVRAFIRVLLIALLIPPLVSDSDLRGL 145
Query 129 HDRLTATAVVRR 140
HDR + TAV+RR
Sbjct 146 HDRASFTAVLRR 157
>gi|336461820|gb|EGO40676.1| hypothetical protein MAPs_26560 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=114
Score = 140 bits (352), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 79/114 (70%), Positives = 89/114 (79%), Gaps = 0/114 (0%)
Query 27 MGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWLLLGVAAVRLFGFTPGQLM 86
MG RL AL+IDWLI+YGLA L + G +S L+T VLVIW +LGV +VRLFGFTPGQL+
Sbjct 1 MGPRLGALMIDWLISYGLAALAMRLGWFSASALATAVLVIWFVLGVVSVRLFGFTPGQLV 60
Query 87 LGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGLHDRLTATAVVRR 140
L L VV V GR VG GR VVRG+L+G VVP LFTD DGRGL DRLTATAVVRR
Sbjct 61 LRLQVVTVDGRGLVGTGRAVVRGVLVGTVVPALFTDWDGRGLQDRLTATAVVRR 114
>gi|54023636|ref|YP_117878.1| hypothetical protein nfa16680 [Nocardia farcinica IFM 10152]
gi|54015144|dbj|BAD56514.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=150
Score = 120 bits (301), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 68/132 (52%), Positives = 89/132 (68%), Gaps = 6/132 (4%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIW 67
+Y G+ LGLP G GSLA MGRR+AA+ +DWLIA G++L+ + GV + + L+IW
Sbjct 23 EYRGEQLGLPREGAGSLASMGRRVAAMFVDWLIAVGISLM-IARGV-----NANLPLLIW 76
Query 68 LLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRG 127
++G+AAV LFGFTPGQ L L V + PVG R + R +L+ VVP LFTD DGRG
Sbjct 77 FVIGIAAVTLFGFTPGQYFLRLRTVRIDAPVPVGFVRALARQVLLVFVVPALFTDGDGRG 136
Query 128 LHDRLTATAVVR 139
+HDR T TA+V
Sbjct 137 MHDRATGTALVN 148
>gi|111018169|ref|YP_701141.1| hypothetical protein RHA1_ro01156 [Rhodococcus jostii RHA1]
gi|110817699|gb|ABG92983.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=158
Score = 117 bits (294), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 67/136 (50%), Positives = 87/136 (64%), Gaps = 1/136 (0%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
++ + G+ LGL GPGSLA GRRLAAL+IDW+ + G+A L + + P STV
Sbjct 22 ETTQSFRGERLGLQAEGPGSLASTGRRLAALMIDWVSSAGVAALIIGDNFFEGP-FSTVT 80
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
L++W ++GVA V LF FTPGQL LG+ V V G VG R +VR L+ VVP TD
Sbjct 81 LLVWFVVGVATVSLFSFTPGQLFLGMQVARVDGPARVGFVRALVRQALLVFVVPGTITDI 140
Query 124 DGRGLHDRLTATAVVR 139
DGRG+ DR T TA++R
Sbjct 141 DGRGMQDRATGTALIR 156
>gi|226360297|ref|YP_002778075.1| hypothetical protein ROP_08830 [Rhodococcus opacus B4]
gi|226238782|dbj|BAH49130.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=158
Score = 117 bits (292), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 66/136 (49%), Positives = 88/136 (65%), Gaps = 1/136 (0%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
++ + G+ LGL GPGSLA GRRLAAL+IDW+ + G+A L + + P ST+
Sbjct 22 ETTQSFRGERLGLQAEGPGSLASTGRRLAALMIDWVSSAGVAALIIGDNFFEGP-FSTIT 80
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
L++W ++GVA V LF FTPGQL LG+ V V G VG+ R +VR L+ VVP TD
Sbjct 81 LLVWFVVGVATVTLFSFTPGQLFLGMQVARVDGPARVGLVRALVRQALLVFVVPGTITDI 140
Query 124 DGRGLHDRLTATAVVR 139
DGRG+ DR T TA++R
Sbjct 141 DGRGMQDRATGTALIR 156
>gi|262202971|ref|YP_003274179.1| RDD domain-containing protein [Gordonia bronchialis DSM 43247]
gi|262086318|gb|ACY22286.1| RDD domain containing protein [Gordonia bronchialis DSM 43247]
Length=167
Score = 116 bits (291), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 70/146 (48%), Positives = 89/146 (61%), Gaps = 17/146 (11%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIW 67
DY G+ LGLP +GPGSLA R++ L +DWLIA GLA+L V F +P +ST+V +W
Sbjct 23 DYRGQDLGLPQSGPGSLATGWSRVSGLFVDWLIAGGLAMLFVGF---DSPHISTMVTAVW 79
Query 68 LLLGVAAVRLFGFTPGQLMLGLVV-----------VAVGGRRP---VGIGRLVVRGLLIG 113
++GV AV LFGFTPGQ +GL V V G P VGI R V R +L+
Sbjct 80 FVIGVVAVTLFGFTPGQFAIGLRVARVDHGPDRAAAEVAGEVPAAAVGIVRAVARQVLMI 139
Query 114 LVVPPLFTDSDGRGLHDRLTATAVVR 139
+VP L D +GR LHDR T TA++R
Sbjct 140 FLVPALINDYNGRALHDRATGTAIIR 165
>gi|325677044|ref|ZP_08156715.1| RDD family domain protein [Rhodococcus equi ATCC 33707]
gi|325552206|gb|EGD21897.1| RDD family domain protein [Rhodococcus equi ATCC 33707]
Length=157
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/131 (49%), Positives = 84/131 (65%), Gaps = 1/131 (0%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWL 68
Y G+ LGLP GPGSLA GRR+ AL+IDW ++ G+ +L ++ W + +ST L +W
Sbjct 26 YRGELLGLPADGPGSLATTGRRIGALVIDWFMSAGVVMLFMQQAPWDS-YVSTYTLGLWF 84
Query 69 LLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGL 128
++G+ V LF FTPGQ +GL V V G PVG R + R LI + P + TD DGRG+
Sbjct 85 VVGLVCVTLFSFTPGQYAMGLQVARVDGPVPVGFLRALARQALIVFIAPAVITDVDGRGM 144
Query 129 HDRLTATAVVR 139
HDR T TA+VR
Sbjct 145 HDRATGTALVR 155
>gi|312140210|ref|YP_004007546.1| integral membrane protein [Rhodococcus equi 103S]
gi|311889549|emb|CBH48866.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=154
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/131 (49%), Positives = 84/131 (65%), Gaps = 1/131 (0%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWL 68
Y G+ LGLP GPGSLA GRR+ AL+IDW ++ G+ +L ++ W + +ST L +W
Sbjct 23 YRGELLGLPADGPGSLATTGRRIGALVIDWFMSAGVVMLFMQQAPWDS-YVSTYTLGLWF 81
Query 69 LLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGL 128
++G+ V LF FTPGQ +GL V V G PVG R + R LI + P + TD DGRG+
Sbjct 82 VVGLVCVTLFSFTPGQYAMGLQVARVDGPVPVGFLRALARQALIVFIAPAVITDVDGRGM 141
Query 129 HDRLTATAVVR 139
HDR T TA+VR
Sbjct 142 HDRATGTALVR 152
>gi|317506327|ref|ZP_07964140.1| RDD family protein [Segniliparus rugosus ATCC BAA-974]
gi|316255379|gb|EFV14636.1| RDD family protein [Segniliparus rugosus ATCC BAA-974]
Length=133
Score = 115 bits (288), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/130 (50%), Positives = 87/130 (67%), Gaps = 9/130 (6%)
Query 16 LPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWLLLGVAAV 75
P+TG GSLAP+ +R AL +DW+++ +ALL F +++ M ST V+ +W +G AV
Sbjct 5 FPETGVGSLAPLPQRALALFVDWVLSGAVALL---FTGFTSNMYSTAVMAVWAAVGATAV 61
Query 76 RLFGFTPGQLMLGLVVVAV------GGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGLH 129
LF FTPGQL +GL V+ V GG +PVG+ R V R +L+ LV+P F D DGRGL
Sbjct 62 SLFSFTPGQLFVGLRVIRVPDSQGKGGDKPVGVLRAVGRAVLLALVIPVFFMDKDGRGLQ 121
Query 130 DRLTATAVVR 139
DRLT+TAVVR
Sbjct 122 DRLTSTAVVR 131
>gi|343924146|ref|ZP_08763709.1| hypothetical protein GOALK_002_01000 [Gordonia alkanivorans NBRC
16433]
gi|343765951|dbj|GAA10635.1| hypothetical protein GOALK_002_01000 [Gordonia alkanivorans NBRC
16433]
Length=167
Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/146 (48%), Positives = 88/146 (61%), Gaps = 17/146 (11%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIW 67
D+ G+ LGLP +GPGSLA R+A LL+DWLIA GLA+L V F + +L T L IW
Sbjct 23 DFRGQDLGLPASGPGSLATGWPRVAGLLVDWLIAGGLAILFVGF---ESSVLGTTQLGIW 79
Query 68 LLLGVAAVRLFGFTPGQLMLGLVVV------------AVGGRRP--VGIGRLVVRGLLIG 113
++G+ AV LFGFTPGQ ++G+ V A G P VGI R R LL+
Sbjct 80 FVMGIFAVSLFGFTPGQFVVGMRVARVDFGPERNAAEAAGKESPASVGIVRAFFRQLLMV 139
Query 114 LVVPPLFTDSDGRGLHDRLTATAVVR 139
+VP L D +GR LHDR T TA+VR
Sbjct 140 FLVPALINDYNGRALHDRATGTAIVR 165
>gi|334565151|ref|ZP_08518142.1| hypothetical protein CbovD2_11301 [Corynebacterium bovis DSM
20582]
Length=161
Score = 108 bits (269), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 66/139 (48%), Positives = 86/139 (62%), Gaps = 6/139 (4%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+P Y G+ LGLP+ GPGSLA +G R+ A LIDWLI Y +A S P +ST V
Sbjct 24 SNPSSYRGERLGLPEAGPGSLARLGSRMGAFLIDWLICYAIAFFLTPVTPRSIP-ISTAV 82
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRP---VGIGRLVVRGLLIGLVVPPLF 120
LV++ + V LF +PG ++G+ V V RP VG+ R VVR LL +V PPL
Sbjct 83 LVLFFVWRTVTVWLFAQSPGHAVVGIGVARVD--RPDERVGLLRAVVRALLSLIVFPPLI 140
Query 121 TDSDGRGLHDRLTATAVVR 139
D+DGRG+HDRLT +AV+R
Sbjct 141 QDTDGRGIHDRLTGSAVIR 159
>gi|226307109|ref|YP_002767069.1| hypothetical protein RER_36220 [Rhodococcus erythropolis PR4]
gi|226186226|dbj|BAH34330.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=157
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 64/138 (47%), Positives = 82/138 (60%), Gaps = 2/138 (1%)
Query 2 TAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLST 61
T Y G+ LG P GPGSL GRR+AALL+DW++A G+A L G + M ST
Sbjct 20 TDGREQSYRGEFLGFPQEGPGSLVGSGRRIAALLVDWVMAVGVASLIT--GDFFDGMTST 77
Query 62 VVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFT 121
V L++W +GV V LF FTPGQ +LGL V + G VG R + R L+ V+P T
Sbjct 78 VTLMVWFAVGVVTVALFNFTPGQFVLGLQVARIEGPIRVGFVRALGRQALLVFVIPATIT 137
Query 122 DSDGRGLHDRLTATAVVR 139
D DGRG+ DR T T +V+
Sbjct 138 DIDGRGMQDRATGTLLVK 155
>gi|229490246|ref|ZP_04384088.1| integral membrane protein [Rhodococcus erythropolis SK121]
gi|229322778|gb|EEN88557.1| integral membrane protein [Rhodococcus erythropolis SK121]
Length=157
Score = 107 bits (267), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 63/134 (48%), Positives = 81/134 (61%), Gaps = 2/134 (1%)
Query 6 PPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLV 65
Y G+ LG P GPGSL GRR+AALL+DW++A G+A L G + M STV L+
Sbjct 24 EQSYRGELLGFPQEGPGSLVGSGRRIAALLVDWVMAVGVASLIT--GDFFDGMTSTVTLM 81
Query 66 IWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDG 125
+W +GV V LF FTPGQ +LGL V + G VG R + R L+ V+P TD DG
Sbjct 82 VWFAVGVVTVALFNFTPGQFVLGLQVARIEGPIRVGFVRALGRQALLVFVIPATITDIDG 141
Query 126 RGLHDRLTATAVVR 139
RG+ DR T T +V+
Sbjct 142 RGMQDRATGTLLVK 155
>gi|319949776|ref|ZP_08023801.1| hypothetical protein ES5_09882 [Dietzia cinnamea P4]
gi|319436576|gb|EFV91671.1| hypothetical protein ES5_09882 [Dietzia cinnamea P4]
Length=161
Score = 107 bits (266), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 64/154 (42%), Positives = 87/154 (57%), Gaps = 23/154 (14%)
Query 2 TAKSPPD--YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFG------- 52
T+ S P+ + G+ LGLP++GPGS+AP+G R AL+IDW +AYGL V G
Sbjct 13 TSGSGPEQKFKGENLGLPESGPGSMAPLGVRFGALVIDWFLAYGLVAAIVSVGGPGALGG 72
Query 53 -------VWSTPMLSTVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRL 105
W+ P+ +W +LGV V LF TPGQ +LG+ V VG R
Sbjct 73 DSLAAVSSWAVPL-------VWGVLGVVCVWLFAQTPGQAVLGIGTARVDAEERVGFVRS 125
Query 106 VVRGLLIGLVVPPLFTDSDGRGLHDRLTATAVVR 139
+VR + I ++PPL D DGRG+HDR T TA++R
Sbjct 126 LVRVVFIFFLLPPLIQDEDGRGMHDRATGTALIR 159
>gi|227488478|ref|ZP_03918794.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
51867]
gi|227091556|gb|EEI26868.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
51867]
Length=158
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/136 (45%), Positives = 87/136 (64%), Gaps = 4/136 (2%)
Query 6 PPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLV 65
P +PG+ +GL ++GPGSLA M RR+ LLIDW+IA +A + F + +TV L+
Sbjct 24 PNRWPGEQIGLAESGPGSLASMVRRIGGLLIDWIIAAIVASVITHF-THALGGQATVQLL 82
Query 66 IWLLLGVAAVRLFGFTPGQLMLGLVVVAVG--GRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
+W ++ V + LF TPGQ LG+ + + G+R VG R + R LL ++PP+ TD+
Sbjct 83 VWAVISVVSATLFARTPGQAALGMGIACIDRPGQR-VGFLRCLARTLLTVFILPPILTDA 141
Query 124 DGRGLHDRLTATAVVR 139
DGRGLHDR T TAV+R
Sbjct 142 DGRGLHDRATGTAVIR 157
>gi|227543084|ref|ZP_03973133.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
51866]
gi|227181072|gb|EEI62044.1| integral membrane protein [Corynebacterium glucuronolyticum ATCC
51866]
Length=158
Score = 105 bits (262), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/136 (45%), Positives = 87/136 (64%), Gaps = 4/136 (2%)
Query 6 PPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLV 65
P +PG+ +GL ++GPGSLA M RR+ LLIDW+IA +A + F + +TV L+
Sbjct 24 PNRWPGEQIGLAESGPGSLASMIRRIGGLLIDWIIAAIVASVITHF-THALGGQATVQLL 82
Query 66 IWLLLGVAAVRLFGFTPGQLMLGLVVVAVG--GRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
+W ++ V + LF TPGQ LG+ + + G+R VG R + R LL ++PP+ TD+
Sbjct 83 VWAVISVVSATLFARTPGQAALGMGIACIDRPGQR-VGFLRCLARTLLTVFILPPILTDA 141
Query 124 DGRGLHDRLTATAVVR 139
DGRGLHDR T TAV+R
Sbjct 142 DGRGLHDRATGTAVIR 157
>gi|340794085|ref|YP_004759548.1| hypothetical protein CVAR_1119 [Corynebacterium variabile DSM
44702]
gi|340533995|gb|AEK36475.1| putative membrane protein [Corynebacterium variabile DSM 44702]
Length=198
Score = 104 bits (260), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 61/135 (46%), Positives = 83/135 (62%), Gaps = 8/135 (5%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPML---STVVLV 65
YPGK LGLP GPGS+AP+ RL ALLIDW I +G+A L T L STV ++
Sbjct 66 YPGKLLGLPKDGPGSVAPLSPRLFALLIDWAICWGIAALICSM----TDALGGVSTVTMM 121
Query 66 IWLLLGVAAVRLFGFTPGQLMLGLVVVAVGG-RRPVGIGRLVVRGLLIGLVVPPLFTDSD 124
+W+L V V LF +PG ++G+ V V + VG+ R ++R +L + PP+ D+D
Sbjct 122 VWILWRVITVWLFAQSPGHAIMGIGVARVDDTEKRVGLLRSIIRTILTVFLFPPIIQDTD 181
Query 125 GRGLHDRLTATAVVR 139
RG+HDR T TAV+R
Sbjct 182 SRGMHDRATGTAVIR 196
>gi|25028659|ref|NP_738713.1| hypothetical protein CE2103 [Corynebacterium efficiens YS-314]
gi|23493945|dbj|BAC18913.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=163
Score = 100 bits (249), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 55/136 (41%), Positives = 85/136 (63%), Gaps = 1/136 (0%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+P +PG+ LGLP++GPGSL + RR+ + IDW+I++ +A++ F + ++T
Sbjct 28 DAPGRWPGEKLGLPESGPGSLVSVARRIGGVCIDWIISWIIAIVLTNFTD-ALGDVATST 86
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
L+I++L+G +F TPG MLG+ + + VG R +VR LL L++P DS
Sbjct 87 LIIFVLMGWLTGWIFARTPGHAMLGMGLARIDAEERVGWWRALVRSLLTILILPAAMVDS 146
Query 124 DGRGLHDRLTATAVVR 139
DGRGLHD+ T TAV+R
Sbjct 147 DGRGLHDKATGTAVIR 162
>gi|259507720|ref|ZP_05750620.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259164670|gb|EEW49224.1| membrane protein [Corynebacterium efficiens YS-314]
Length=157
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/136 (41%), Positives = 85/136 (63%), Gaps = 1/136 (0%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+P +PG+ LGLP++GPGSL + RR+ + IDW+I++ +A++ F + ++T
Sbjct 22 DAPGRWPGEKLGLPESGPGSLVSVARRIGGVCIDWIISWIIAIVLTNFTD-ALGDVATST 80
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDS 123
L+I++L+G +F TPG MLG+ + + VG R +VR LL L++P DS
Sbjct 81 LIIFVLMGWLTGWIFARTPGHAMLGMGLARIDAEERVGWWRALVRSLLTILILPAAMVDS 140
Query 124 DGRGLHDRLTATAVVR 139
DGRGLHD+ T TAV+R
Sbjct 141 DGRGLHDKATGTAVIR 156
>gi|333918928|ref|YP_004492509.1| RDD domain-containing protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333481149|gb|AEF39709.1| RDD domain containing protein [Amycolicicoccus subflavus DQS3-9A1]
Length=134
Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 58/132 (44%), Positives = 75/132 (57%), Gaps = 5/132 (3%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIW 67
Y G+ LGLP+ GPGSL RR A D +A G+A + F P L++W
Sbjct 6 KYKGEALGLPEDGPGSLPTWLRRSGAFFADIFMAAGVAAI---FTFPEPP--RNWSLLVW 60
Query 68 LLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRG 127
++ + AV F FTPGQ + GL V V PVG+ R V+R L+ L++P D DGRG
Sbjct 61 FMVAIFAVLFFSFTPGQALFGLRVQRVDRAAPVGLWRSVLRAFLVSLLIPAAIWDRDGRG 120
Query 128 LHDRLTATAVVR 139
LHDRLT TA+VR
Sbjct 121 LHDRLTGTAIVR 132
>gi|225021861|ref|ZP_03711053.1| hypothetical protein CORMATOL_01893 [Corynebacterium matruchotii
ATCC 33806]
gi|305681517|ref|ZP_07404324.1| RDD family protein [Corynebacterium matruchotii ATCC 14266]
gi|224945364|gb|EEG26573.1| hypothetical protein CORMATOL_01893 [Corynebacterium matruchotii
ATCC 33806]
gi|305659722|gb|EFM49222.1| RDD family protein [Corynebacterium matruchotii ATCC 14266]
Length=161
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/136 (42%), Positives = 84/136 (62%), Gaps = 2/136 (1%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+P +PG+ LGLP TGPG+LA + RR + IDW+I + +A F + +T+
Sbjct 25 DTPAKWPGEKLGLPQTGPGALASVARRAGGVAIDWVICWIVAGFLHMFTTYLGDT-ATLT 83
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGR-RPVGIGRLVVRGLLIGLVVPPLFTD 122
L+++++LG+ +V LF TPGQ +LG+ V V R + VG+ R R LL V+P D
Sbjct 84 LMLFVILGIISVALFARTPGQALLGMGVARVDQRDQRVGLARAAARTLLTIFVLPAAMVD 143
Query 123 SDGRGLHDRLTATAVV 138
+DGRG+HDR T TAV+
Sbjct 144 TDGRGMHDRATGTAVI 159
>gi|296393242|ref|YP_003658126.1| RDD domain-containing protein [Segniliparus rotundus DSM 44985]
gi|296180389|gb|ADG97295.1| RDD domain containing protein [Segniliparus rotundus DSM 44985]
Length=133
Score = 97.8 bits (242), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/130 (48%), Positives = 80/130 (62%), Gaps = 9/130 (6%)
Query 16 LPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVVLVIWLLLGVAAV 75
P+ G GSLAP+ +R AL IDW+++ G+ALL +F ++ ST VL +W +G AV
Sbjct 5 FPEAGVGSLAPLTQRALALFIDWVLSGGVALLFTDF---TSNSYSTAVLAVWAAMGAVAV 61
Query 76 RLFGFTPGQLMLGLVVVAV------GGRRPVGIGRLVVRGLLIGLVVPPLFTDSDGRGLH 129
LF FTPGQL +GL V+ V GG +PVG R R L+ LV+P D +GRG
Sbjct 62 SLFSFTPGQLFVGLRVIRVPDSRGNGGDQPVGALRAAGRAALLALVIPAFLVDKNGRGFQ 121
Query 130 DRLTATAVVR 139
DRLT TAVVR
Sbjct 122 DRLTNTAVVR 131
>gi|68535778|ref|YP_250483.1| hypothetical protein jk0703 [Corynebacterium jeikeium K411]
gi|68263377|emb|CAI36865.1| conserved hypothetical protein [Corynebacterium jeikeium K411]
Length=158
Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 61/135 (46%), Positives = 82/135 (61%), Gaps = 8/135 (5%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPML---STVVLV 65
YPG LGLP GPGSL+P+ RL ALLIDWL YGLA F +T +L +T ++
Sbjct 26 YPGARLGLPKEGPGSLSPLFPRLGALLIDWLACYGLAW----FVTSTTDVLGDSATAAMI 81
Query 66 IWLLLGVAAVRLFGFTPGQLMLGLVVVAVGG-RRPVGIGRLVVRGLLIGLVVPPLFTDSD 124
+++ V V LF +PG ++G+ V + VG+ R VVR LL + PP+ D+D
Sbjct 82 FFIIWRVLTVWLFAQSPGHAIVGIGVGRIDKPDERVGLWRSVVRTLLTVFLFPPIIQDTD 141
Query 125 GRGLHDRLTATAVVR 139
GRG+HDR T TAV+R
Sbjct 142 GRGMHDRATGTAVIR 156
>gi|297194772|ref|ZP_06912170.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
gi|297152453|gb|EFH31762.1| integral membrane protein [Streptomyces pristinaespiralis ATCC
25486]
Length=155
Score = 97.1 bits (240), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/135 (49%), Positives = 76/135 (57%), Gaps = 11/135 (8%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDW----LIAYGLALLGVEFGVWSTPMLSTVVL 64
Y G+ LGLP+ GPGS+AP+GRR AL IDW LIAYGL F L
Sbjct 27 YRGQRLGLPEHGPGSVAPLGRRFGALFIDWGLCFLIAYGL------FAGGDQQAAGNWAL 80
Query 65 VIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSD 124
I+L LGV V GFTPG+ +LGL V + G R + G VVR L+ L +P L D D
Sbjct 81 GIFLALGVLTVGTVGFTPGKRLLGLRVASENGGR-LSFGWAVVRTALLCLAIPALVWDRD 139
Query 125 GRGLHDRLTATAVVR 139
GRGLHDRL VR
Sbjct 140 GRGLHDRLARAVQVR 154
>gi|331698339|ref|YP_004334578.1| RDD domain-containing protein [Pseudonocardia dioxanivorans CB1190]
gi|326953028|gb|AEA26725.1| RDD domain containing protein [Pseudonocardia dioxanivorans CB1190]
Length=157
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/138 (45%), Positives = 80/138 (58%), Gaps = 5/138 (3%)
Query 5 SPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGV---EFGVWSTPMLST 61
+P PG+ GLP TG GS+A RR + IDWL+ Y ++LL V F ST
Sbjct 20 APRTPPGEKFGLPATGVGSVAGFWRRAGGVTIDWLLGYLVSLLFVGASSFDRGST--FGW 77
Query 62 VVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFT 121
+ ++W + +V +FG TPG LG+ V G+ VGI R VVR LL+G+V+PPL
Sbjct 78 TIWLVWFAITALSVAVFGSTPGMAALGMRAAPVDGKVLVGIPRAVVRTLLLGVVIPPLIR 137
Query 122 DSDGRGLHDRLTATAVVR 139
D DGRGLHDR T V+R
Sbjct 138 DEDGRGLHDRAAKTIVIR 155
>gi|260578134|ref|ZP_05846055.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
gi|258603773|gb|EEW17029.1| membrane protein [Corynebacterium jeikeium ATCC 43734]
Length=158
Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/134 (44%), Positives = 77/134 (58%), Gaps = 6/134 (4%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALL--GVEFGVWSTPMLSTVVLVI 66
YPG LGLP GPGSL+P+ RL ALLIDWL Y LA + + + + +I
Sbjct 26 YPGARLGLPKDGPGSLSPLFPRLGALLIDWLACYALAWFVTSTTDALGDSATAAMIFFII 85
Query 67 WLLLGVAAVRLFGFTPGQLMLGLVVVAVGG-RRPVGIGRLVVRGLLIGLVVPPLFTDSDG 125
W +L V LF +PG ++G+ V + VG+ R VVR LL + PP+ D+DG
Sbjct 86 WRIL---TVWLFAQSPGHAIVGIGVARIDKPDERVGLWRSVVRTLLTVFLFPPIIQDTDG 142
Query 126 RGLHDRLTATAVVR 139
RG+HDR T TAV+R
Sbjct 143 RGMHDRATGTAVIR 156
>gi|296139231|ref|YP_003646474.1| RDD domain-containing protein [Tsukamurella paurometabola DSM
20162]
gi|296027365|gb|ADG78135.1| RDD domain containing protein [Tsukamurella paurometabola DSM
20162]
Length=160
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 68/138 (50%), Positives = 81/138 (59%), Gaps = 8/138 (5%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDW----LIAYGLALLGVEFGVWSTPMLSTVV 63
+Y G LGLP G GS+AP GRR+ AL++DW LIA +A FG T T
Sbjct 23 EYRGAGLGLPRDGVGSIAPTGRRVLALMLDWVPSALIALAIAGPAKVFGGEPT-AFDTSA 81
Query 64 LVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVG--GRRPVGIGRLVVRGLLIGLVVPPLFT 121
L IW ++GV AV LFGFTPGQ GL V + G R VG+ R + R LI +VPPL
Sbjct 82 LGIWFVVGVLAVTLFGFTPGQYFAGLRVARIEDPGMR-VGLLRALGRNALIVFLVPPLIQ 140
Query 122 DSDGRGLHDRLTATAVVR 139
D DGRG+ DR T T VVR
Sbjct 141 DVDGRGMQDRATGTVVVR 158
>gi|291444116|ref|ZP_06583506.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
gi|291347063|gb|EFE73967.1| integral membrane protein [Streptomyces roseosporus NRRL 15998]
Length=155
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/135 (47%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDW----LIAYGLALLGVEFGVWSTPMLSTVVL 64
Y GK LGLP+ GPGS+AP+GRR A+ IDW LIAYGL F L
Sbjct 27 YRGKGLGLPEEGPGSIAPLGRRFGAIFIDWTLCMLIAYGL------FARGDQQAAGNWAL 80
Query 65 VIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSD 124
I+L++ + V G TPG+ +LG+ VVA G R +G R+ VR +L+ LV+P L D D
Sbjct 81 GIFLVMSLLTVGTIGCTPGKRLLGVRVVADDGGR-LGFVRVAVRTVLLLLVIPALVWDRD 139
Query 125 GRGLHDRLTATAVVR 139
GRGLHDRL+ + VR
Sbjct 140 GRGLHDRLSRSVQVR 154
>gi|182439109|ref|YP_001826828.1| hypothetical protein SGR_5316 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326779761|ref|ZP_08239026.1| RDD domain containing protein [Streptomyces cf. griseus XylebKG-1]
gi|178467625|dbj|BAG22145.1| putative membrane protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326660094|gb|EGE44940.1| RDD domain containing protein [Streptomyces griseus XylebKG-1]
Length=155
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/137 (49%), Positives = 84/137 (62%), Gaps = 15/137 (10%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDW----LIAYGLALLGVE--FGVWSTPMLSTV 62
Y GK LGLP+ GPGS+AP+GRR AL IDW LIAYGL G + G W+
Sbjct 27 YRGKGLGLPEEGPGSVAPLGRRFGALFIDWTLCMLIAYGLLARGDQQAAGNWA------- 79
Query 63 VLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTD 122
L ++L+L + V G TPG+ +LG+ VVA G R +G R+ VR +L+ LV+P L D
Sbjct 80 -LGVFLVLSLLTVGTIGCTPGKRLLGVRVVAEDGGR-LGFVRVAVRTVLLLLVIPALVWD 137
Query 123 SDGRGLHDRLTATAVVR 139
DGRGLHDRL+ VR
Sbjct 138 RDGRGLHDRLSRAVQVR 154
>gi|239987157|ref|ZP_04707821.1| hypothetical protein SrosN1_07627 [Streptomyces roseosporus NRRL
11379]
Length=135
Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/135 (47%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDW----LIAYGLALLGVEFGVWSTPMLSTVVL 64
Y GK LGLP+ GPGS+AP+GRR A+ IDW LIAYGL F L
Sbjct 7 YRGKGLGLPEEGPGSIAPLGRRFGAIFIDWTLCMLIAYGL------FARGDQQAAGNWAL 60
Query 65 VIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTDSD 124
I+L++ + V G TPG+ +LG+ VVA G R +G R+ VR +L+ LV+P L D D
Sbjct 61 GIFLVMSLLTVGTIGCTPGKRLLGVRVVADDGGR-LGFVRVAVRTVLLLLVIPALVWDRD 119
Query 125 GRGLHDRLTATAVVR 139
GRGLHDRL+ + VR
Sbjct 120 GRGLHDRLSRSVQVR 134
>gi|311741479|ref|ZP_07715303.1| RDD family domain protein [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303649|gb|EFQ79728.1| RDD family domain protein [Corynebacterium pseudogenitalium ATCC
33035]
Length=157
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/141 (44%), Positives = 87/141 (62%), Gaps = 10/141 (7%)
Query 4 KSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPMLSTVV 63
+ P +PG+ LGLP++GPGSLAP+GRR A+ IDW++ LA L F T L V
Sbjct 21 EGPGRWPGEKLGLPESGPGSLAPVGRRAGAVAIDWIVCMLLANLIHMF----TTELGGVA 76
Query 64 LV---IWLLLGVAAVRLFGFTPGQLMLGLVV--VAVGGRRPVGIGRLVVRGLLIGLVVPP 118
+ +W+++G+ LF TPG L+LG+ V + V G R VG+ R +R +L G++ P
Sbjct 77 FLGYALWVIMGIVCGWLFARTPGMLLLGMGVARLDVPGAR-VGLWRAALRTVLTGVLFPA 135
Query 119 LFTDSDGRGLHDRLTATAVVR 139
D+DGRG+HDR T T V+R
Sbjct 136 AMVDADGRGMHDRATGTIVIR 156
>gi|302534072|ref|ZP_07286414.1| integral membrane protein [Streptomyces sp. C]
gi|302442967|gb|EFL14783.1| integral membrane protein [Streptomyces sp. C]
Length=155
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/137 (49%), Positives = 81/137 (60%), Gaps = 15/137 (10%)
Query 9 YPGKTLGLPDTGPGSLAPMGRRLAALLIDW----LIAYGLALLG--VEFGVWSTPMLSTV 62
YPG+ LGLP +GPGS A GRRL A+LIDW LIAYGL G G W+ + ++
Sbjct 27 YPGQRLGLPRSGPGSAARFGRRLGAVLIDWIGCQLIAYGLITHGDLSAAGNWTLALFLSL 86
Query 63 VLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGRRPVGIGRLVVRGLLIGLVVPPLFTD 122
+ V GFTPG+ MLGL V+ GG R + I R+V+R LL+ LV+P L D
Sbjct 87 T--------LLTVGTVGFTPGKRMLGLRVIGQGGGR-LSIPRVVLRTLLLALVIPALIWD 137
Query 123 SDGRGLHDRLTATAVVR 139
DGRGLHDRL VR
Sbjct 138 RDGRGLHDRLAGAVQVR 154
>gi|300858863|ref|YP_003783846.1| hypothetical protein cpfrc_01446 [Corynebacterium pseudotuberculosis
FRC41]
gi|300686317|gb|ADK29239.1| putative membrane protein [Corynebacterium pseudotuberculosis
FRC41]
gi|302206570|gb|ADL10912.1| Hypothetical protein CpC231_1442 [Corynebacterium pseudotuberculosis
C231]
gi|302331125|gb|ADL21319.1| Hypothetical protein Cp1002_1443 [Corynebacterium pseudotuberculosis
1002]
gi|308276813|gb|ADO26712.1| Putative membrane protein [Corynebacterium pseudotuberculosis
I19]
gi|341825253|gb|AEK92774.1| Hypothetical protein CpPAT10_1440 [Corynebacterium pseudotuberculosis
PAT10]
Length=157
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/142 (43%), Positives = 81/142 (58%), Gaps = 8/142 (5%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPML- 59
+ +P +PG+ LGLP GPG+L + RR +LIDW I A + F TP L
Sbjct 18 IDCDTPARWPGEHLGLPQKGPGALGSVLRRSCGVLIDWGICLASAAVIHMF----TPALG 73
Query 60 --STVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGR-RPVGIGRLVVRGLLIGLVV 116
ST L+++ +LGV +V LF TPGQ +LG+ V V R VG R +VR L +
Sbjct 74 GVSTATLILFFILGVVSVWLFARTPGQAILGMGVARVDVRTEKVGFVRALVRTALTCFIF 133
Query 117 PPLFTDSDGRGLHDRLTATAVV 138
P + D+DGRG+HDR T TAVV
Sbjct 134 PAVLVDADGRGMHDRATGTAVV 155
>gi|326382487|ref|ZP_08204178.1| RDD domain containing protein [Gordonia neofelifaecis NRRL B-59395]
gi|326198606|gb|EGD55789.1| RDD domain containing protein [Gordonia neofelifaecis NRRL B-59395]
Length=177
Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/157 (43%), Positives = 84/157 (54%), Gaps = 27/157 (17%)
Query 8 DYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTP---------- 57
+Y G+ LGLP+ GPGSLA R+ LL DWLIA GLA+ V FGV S
Sbjct 21 EYRGQDLGLPEVGPGSLAGGWLRVLGLLFDWLIAGGLAI--VIFGVKSAEGSASSLEMTM 78
Query 58 -MLSTVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAV--------------GGRRPVGI 102
+T L+IW ++GV AV LFGFTPGQ + G V V + VG
Sbjct 79 RSAATPQLIIWFVIGVVAVALFGFTPGQFIAGTRVARVDLGSERGAAEASGESAKAAVGP 138
Query 103 GRLVVRGLLIGLVVPPLFTDSDGRGLHDRLTATAVVR 139
R + R +++ VVP L D +GR +HDR T TA+VR
Sbjct 139 VRALGRQVILIFVVPALINDYNGRAMHDRATGTALVR 175
>gi|337291175|ref|YP_004630196.1| hypothetical protein CULC22_01567 [Corynebacterium ulcerans BR-AD22]
gi|334697286|gb|AEG82083.1| putative membrane protein [Corynebacterium ulcerans 809]
gi|334699481|gb|AEG84277.1| putative membrane protein [Corynebacterium ulcerans BR-AD22]
Length=157
Score = 93.6 bits (231), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/142 (42%), Positives = 81/142 (58%), Gaps = 8/142 (5%)
Query 1 MTAKSPPDYPGKTLGLPDTGPGSLAPMGRRLAALLIDWLIAYGLALLGVEFGVWSTPML- 59
+ +P +PG+ LGLP GPG+L + RR +LIDW G+ L+ TP L
Sbjct 18 IDGDTPARWPGEHLGLPQKGPGALGSVLRRSCGVLIDW----GICLISATVIHMFTPALG 73
Query 60 --STVVLVIWLLLGVAAVRLFGFTPGQLMLGLVVVAVGGR-RPVGIGRLVVRGLLIGLVV 116
ST L+++ +LGV +V LF TPGQ +LG+ V + R VG R +VR L +
Sbjct 74 GVSTATLILFFILGVISVWLFARTPGQAILGMGVARIDVRTEKVGFVRALVRTALTCFIF 133
Query 117 PPLFTDSDGRGLHDRLTATAVV 138
P + D+DGRG+HDR T TAVV
Sbjct 134 PAVLVDADGRGMHDRATGTAVV 155
Lambda K H
0.326 0.147 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 130895291376
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40