BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2230c Length=379 Score E Sequences producing significant alignments: (Bits) Value gi|15609367|ref|NP_216746.1| hypothetical protein Rv2230c [Mycob... 746 0.0 gi|289443739|ref|ZP_06433483.1| conserved hypothetical protein [... 745 0.0 gi|308369662|ref|ZP_07666775.1| hypothetical protein TMBG_00779 ... 745 0.0 gi|289447860|ref|ZP_06437604.1| conserved hypothetical protein [... 744 0.0 gi|118617019|ref|YP_905351.1| hypothetical protein MUL_1322 [Myc... 567 8e-160 gi|15827866|ref|NP_302129.1| hypothetical protein ML1639 [Mycoba... 566 2e-159 gi|183983296|ref|YP_001851587.1| hypothetical protein MMAR_3306 ... 565 3e-159 gi|296166121|ref|ZP_06848566.1| NIF3-like protein [Mycobacterium... 559 3e-157 gi|41408080|ref|NP_960916.1| hypothetical protein MAP1982c [Myco... 544 9e-153 gi|342857252|ref|ZP_08713908.1| hypothetical protein MCOL_00200 ... 543 2e-152 gi|336461841|gb|EGO40697.1| dinuclear metal center protein, YbgI... 542 4e-152 gi|254822752|ref|ZP_05227753.1| hypothetical protein MintA_22674... 535 5e-150 gi|240172444|ref|ZP_04751103.1| hypothetical protein MkanA1_2423... 533 2e-149 gi|118471522|ref|YP_888584.1| hypothetical protein MSMEG_4307 [M... 527 1e-147 gi|118464583|ref|YP_881417.1| hypothetical protein MAV_2209 [Myc... 526 2e-147 gi|108800310|ref|YP_640507.1| hypothetical protein Mmcs_3344 [My... 526 3e-147 gi|333990304|ref|YP_004522918.1| hypothetical protein JDM601_166... 521 9e-146 gi|145223477|ref|YP_001134155.1| hypothetical protein Mflv_2890 ... 515 5e-144 gi|315443838|ref|YP_004076717.1| hypothetical protein Mspyr1_223... 514 7e-144 gi|120404588|ref|YP_954417.1| hypothetical protein Mvan_3620 [My... 505 4e-141 gi|169628991|ref|YP_001702640.1| hypothetical protein MAB_1903 [... 442 3e-122 gi|333918913|ref|YP_004492494.1| hypothetical protein AS9A_1242 ... 430 2e-118 gi|111018196|ref|YP_701168.1| hypothetical protein RHA1_ro01183 ... 427 2e-117 gi|226307147|ref|YP_002767107.1| hypothetical protein RER_36600 ... 425 8e-117 gi|229490321|ref|ZP_04384163.1| conserved hypothetical protein [... 421 1e-115 gi|331696746|ref|YP_004332985.1| NGG1p interacting factor 3 prot... 418 1e-114 gi|226360322|ref|YP_002778100.1| hypothetical protein ROP_09080 ... 412 4e-113 gi|296394620|ref|YP_003659504.1| hypothetical protein Srot_2222 ... 410 1e-112 gi|317508020|ref|ZP_07965710.1| NIF3 protein [Segniliparus rugos... 399 4e-109 gi|54023602|ref|YP_117844.1| hypothetical protein nfa16340 [Noca... 394 1e-107 gi|256375026|ref|YP_003098686.1| hypothetical protein Amir_0879 ... 388 1e-105 gi|38234251|ref|NP_940018.1| hypothetical protein DIP1680 [Coryn... 383 3e-104 gi|343924131|ref|ZP_08763694.1| hypothetical protein GOALK_002_0... 375 8e-102 gi|227503208|ref|ZP_03933257.1| protein of hypothetical function... 368 9e-100 gi|312140239|ref|YP_004007575.1| hypothetical protein REQ_28770 ... 367 2e-99 gi|325677014|ref|ZP_08156685.1| NIF3-like protein [Rhodococcus e... 365 9e-99 gi|213965806|ref|ZP_03393998.1| conserved hypothetical protein [... 363 4e-98 gi|262202987|ref|YP_003274195.1| hypothetical protein Gbro_3096 ... 362 4e-98 gi|305680955|ref|ZP_07403762.1| dinuclear metal center protein, ... 360 2e-97 gi|255324868|ref|ZP_05365977.1| conserved hypothetical protein [... 358 6e-97 gi|225021831|ref|ZP_03711023.1| hypothetical protein CORMATOL_01... 358 1e-96 gi|311741454|ref|ZP_07715278.1| NIF3-like protein [Corynebacteri... 357 2e-96 gi|227548843|ref|ZP_03978892.1| protein of hypothetical function... 355 5e-96 gi|337291200|ref|YP_004630221.1| hypothetical protein CULC22_015... 352 4e-95 gi|344044317|gb|EGV39995.1| hypothetical protein CgS9114_10222 [... 350 2e-94 gi|300780760|ref|ZP_07090614.1| NIF3-like protein [Corynebacteri... 350 3e-94 gi|19553438|ref|NP_601440.1| hypothetical protein NCgl2157 [Cory... 349 4e-94 gi|62391079|ref|YP_226481.1| hypothetical protein cg2457 [Coryne... 348 7e-94 gi|145296196|ref|YP_001139017.1| hypothetical protein cgR_2114 [... 348 8e-94 gi|300858915|ref|YP_003783898.1| hypothetical protein cpfrc_0149... 348 1e-93 >gi|15609367|ref|NP_216746.1| hypothetical protein Rv2230c [Mycobacterium tuberculosis H37Rv] gi|31793411|ref|NP_855904.1| hypothetical protein Mb2255c [Mycobacterium bovis AF2122/97] gi|121638113|ref|YP_978337.1| hypothetical protein BCG_2248c [Mycobacterium bovis BCG str. Pasteur 1173P2] 52 more sequence titles Length=379 Score = 746 bits (1927), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/379 (100%), Positives = 379/379 (100%), Gaps = 0/379 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL Sbjct 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT Sbjct 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH Sbjct 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS Sbjct 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA Sbjct 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV Sbjct 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 Query 361 CTICTDPWNLDHETGRDQA 379 CTICTDPWNLDHETGRDQA Sbjct 361 CTICTDPWNLDHETGRDQA 379 >gi|289443739|ref|ZP_06433483.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289570350|ref|ZP_06450577.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289750827|ref|ZP_06510205.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289754339|ref|ZP_06513717.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289416658|gb|EFD13898.1| conserved hypothetical protein [Mycobacterium tuberculosis T46] gi|289544104|gb|EFD47752.1| conserved hypothetical protein [Mycobacterium tuberculosis T17] gi|289691414|gb|EFD58843.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289694926|gb|EFD62355.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length=379 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/379 (99%), Positives = 379/379 (100%), Gaps = 0/379 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL Sbjct 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT Sbjct 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH Sbjct 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS Sbjct 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA Sbjct 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFG+SLPVRV Sbjct 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGSSLPVRV 360 Query 361 CTICTDPWNLDHETGRDQA 379 CTICTDPWNLDHETGRDQA Sbjct 361 CTICTDPWNLDHETGRDQA 379 >gi|308369662|ref|ZP_07666775.1| hypothetical protein TMBG_00779 [Mycobacterium tuberculosis SUMu002] gi|308370952|ref|ZP_07423331.2| hypothetical protein TMCG_00328 [Mycobacterium tuberculosis SUMu003] gi|308372178|ref|ZP_07427698.2| hypothetical protein TMDG_00710 [Mycobacterium tuberculosis SUMu004] 15 more sequence titles Length=397 Score = 745 bits (1923), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/379 (100%), Positives = 379/379 (100%), Gaps = 0/379 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL Sbjct 19 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 78 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT Sbjct 79 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 138 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH Sbjct 139 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 198 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS Sbjct 199 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 258 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA Sbjct 259 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 318 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV Sbjct 319 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 378 Query 361 CTICTDPWNLDHETGRDQA 379 CTICTDPWNLDHETGRDQA Sbjct 379 CTICTDPWNLDHETGRDQA 397 >gi|289447860|ref|ZP_06437604.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289420818|gb|EFD18019.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] Length=379 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/379 (99%), Positives = 378/379 (99%), Gaps = 0/379 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL Sbjct 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT Sbjct 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH Sbjct 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS Sbjct 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA Sbjct 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV Sbjct 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 Query 361 CTICTDPWNLDHETGRDQA 379 CTICTDPWNLDH TGRDQA Sbjct 361 CTICTDPWNLDHATGRDQA 379 >gi|118617019|ref|YP_905351.1| hypothetical protein MUL_1322 [Mycobacterium ulcerans Agy99] gi|118569129|gb|ABL03880.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=378 Score = 567 bits (1462), Expect = 8e-160, Method: Compositional matrix adjust. Identities = 299/370 (81%), Positives = 330/370 (90%), Gaps = 0/370 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVI+VLD AYPPRLA+SWDSVGLVCGDP + V+SVTVAVDATPAVVD+VP+ GL Sbjct 1 MSVRLADVIEVLDGAYPPRLAESWDSVGLVCGDPGEPVESVTVAVDATPAVVDEVPERGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAANT KG L+HRLIRTGRSLFTAHTNADSASPG+SDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAANTAKGALIHRLIRTGRSLFTAHTNADSASPGMSDALAQALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V++VL P A+LDKWVIYVPRE++E V+AA+F+AGAGHIGDYSHCSWSV G GQFL Sbjct 121 VESVLARSPSVAELDKWVIYVPREHTEPVQAAIFDAGAGHIGDYSHCSWSVTGIGQFLPL 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASPAIGSVGTVERV EDRVEV+APARARA VL+AMRAAHPYEEPAFDI ALVPPP Sbjct 181 DGASPAIGSVGTVERVTEDRVEVIAPARARAAVLSAMRAAHPYEEPAFDILALVPPPADV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIG L +P+ LR FV+R+ A LP T+ GVRAAGDP++LV+RVAVCGGAGDSLL A Sbjct 241 GLGRIGTLDRPQTLRDFVSRVGAVLPQTSWGVRAAGDPEMLVTRVAVCGGAGDSLLGAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AADVQAY+TADLRHHPADEH RAS VALIDVAHWASEFPWCGQAAEVLRSHFG +LPVRV Sbjct 301 AADVQAYLTADLRHHPADEHRRASAVALIDVAHWASEFPWCGQAAEVLRSHFGEALPVRV 360 Query 361 CTICTDPWNL 370 C + TDPWN+ Sbjct 361 CPLRTDPWNV 370 >gi|15827866|ref|NP_302129.1| hypothetical protein ML1639 [Mycobacterium leprae TN] gi|221230343|ref|YP_002503759.1| hypothetical protein MLBr_01639 [Mycobacterium leprae Br4923] gi|20978803|sp|O69481.1|Y1639_MYCLE RecName: Full=UPF0135 protein ML1639 gi|3150237|emb|CAA19217.1| hypothetical protein MLCB1243.36 [Mycobacterium leprae] gi|13093418|emb|CAC30590.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933450|emb|CAR71734.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=385 Score = 566 bits (1459), Expect = 2e-159, Method: Compositional matrix adjust. Identities = 306/385 (80%), Positives = 337/385 (88%), Gaps = 7/385 (1%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MS RLADVI+VLD AYPPR AQSWDSVGLVCGDP+DV++++T+AVDATPAV+D+VP +GL Sbjct 1 MSARLADVIEVLDHAYPPRFAQSWDSVGLVCGDPEDVLEAITIAVDATPAVIDEVPDSGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLL GVDTVA +TPKG LVHRLIR+GRSLFTAHTNADSASPGVSDALAH GLT Sbjct 61 LLVHHPLLLHGVDTVAVSTPKGALVHRLIRSGRSLFTAHTNADSASPGVSDALAHVFGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 VDAVL+P+ G A LDKWVIYVP E+ AV+AAVFEAGAGHIGDYSHCSWSV GTGQF+ H Sbjct 121 VDAVLEPLLGVASLDKWVIYVPLEHVAAVQAAVFEAGAGHIGDYSHCSWSVTGTGQFMPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASP +GS+G +ERVAEDRVEVVAPARARA VL+AM AAHPYEEPAFDIFALVPPP Sbjct 181 DGASPVVGSIGAIERVAEDRVEVVAPARARAAVLSAMHAAHPYEEPAFDIFALVPPPGDV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIG LP+PE L FVAR+ AALP T++GVRA GDPD+LVSRVAVCGGAGDSLL+ A Sbjct 241 GLGRIGTLPRPESLSAFVARVGAALPQTSSGVRATGDPDMLVSRVAVCGGAGDSLLSLAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 ADVQAYVTADLRHHPADEH RAS VALIDVAHWASEFPWCGQAA+VLRSHFG +L VRV Sbjct 301 VADVQAYVTADLRHHPADEHRRASNVALIDVAHWASEFPWCGQAADVLRSHFGTALSVRV 360 Query 361 CTICTDPWNLD-------HETGRDQ 378 CTI TDPWNL ++GRDQ Sbjct 361 CTIRTDPWNLGARRVNDVSDSGRDQ 385 >gi|183983296|ref|YP_001851587.1| hypothetical protein MMAR_3306 [Mycobacterium marinum M] gi|183176622|gb|ACC41732.1| conserved hypothetical protein [Mycobacterium marinum M] Length=378 Score = 565 bits (1457), Expect = 3e-159, Method: Compositional matrix adjust. Identities = 299/370 (81%), Positives = 329/370 (89%), Gaps = 0/370 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVI+VLD AYPPRLA+SWDSVGLVCGDP + V+SVTVAVDATPAVVD+VP+ GL Sbjct 1 MSVRLADVIEVLDGAYPPRLAESWDSVGLVCGDPGEPVESVTVAVDATPAVVDEVPERGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAANT KG L+H LIRTGRSLFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAANTAKGALIHHLIRTGRSLFTAHTNADSASPGVSDALAQALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V++VL P A+LDKWVIYVPRE++E V+AA+F+AGAGHIGDYSHCSWSV G GQFL Sbjct 121 VESVLARSPSVAELDKWVIYVPREHTEPVQAAIFDAGAGHIGDYSHCSWSVTGIGQFLPL 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGASPAIGSVGTVERV EDRVEV+APARARA VL+AMRAAHPYEEPAFDI ALVPPP Sbjct 181 DGASPAIGSVGTVERVTEDRVEVIAPARARAAVLSAMRAAHPYEEPAFDILALVPPPADV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIG L +P+ LR FV+R+ A LP T+ GVRAAGDP++LV+RVAVCGGAGDSLL A Sbjct 241 GLGRIGTLDRPQTLRDFVSRVGAVLPQTSWGVRAAGDPEMLVTRVAVCGGAGDSLLGAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AADVQAY+TADLRHHPADEH RAS VALIDVAHWASEFPWCGQAAEVLRSHFG +LPVRV Sbjct 301 AADVQAYLTADLRHHPADEHRRASAVALIDVAHWASEFPWCGQAAEVLRSHFGEALPVRV 360 Query 361 CTICTDPWNL 370 C + TDPWN+ Sbjct 361 CPLRTDPWNV 370 >gi|296166121|ref|ZP_06848566.1| NIF3-like protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898530|gb|EFG78091.1| NIF3-like protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=383 Score = 559 bits (1440), Expect = 3e-157, Method: Compositional matrix adjust. Identities = 305/378 (81%), Positives = 338/378 (90%), Gaps = 3/378 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 +SVRLADVI VLD+AYPPRLA+ WDSVGLVCGDPDD V+SVTVAVDATPAVVD+VP GL Sbjct 3 VSVRLADVIGVLDEAYPPRLAEPWDSVGLVCGDPDDAVESVTVAVDATPAVVDEVPAGGL 62 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVD VAA+TPKG LVHRLIRTGRSLFTAHTNADSASPGVSDALAHA+GLT Sbjct 63 LLAHHPLLLRGVDRVAASTPKGALVHRLIRTGRSLFTAHTNADSASPGVSDALAHALGLT 122 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+A L+P A DLDKWV+YVPREN++AV+AA+F AGAGHIGDYSHCSWSV+G GQFL H Sbjct 123 VEAALEPRTVAPDLDKWVVYVPRENAQAVQAAMFGAGAGHIGDYSHCSWSVSGIGQFLPH 182 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GA+PA+GSVGTVE+VAEDR EVVAPAR RA VLAAMRAAHPYEEPAFD+ AL+PPP + Sbjct 183 EGATPAVGSVGTVEQVAEDRFEVVAPARIRAAVLAAMRAAHPYEEPAFDVLALLPPPGDA 242 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIG LP+PEPLR FV+R++AALP TA GVRA+GDPD+ VSRVAVCGGAGDSLLAT A Sbjct 243 GLGRIGALPRPEPLRDFVSRVDAALPRTAWGVRASGDPDMPVSRVAVCGGAGDSLLATAA 302 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAYVTADLRHHPADEH RAS VAL+DVAHWASEFPWC QAA++LRS FGA+LPVRV Sbjct 303 GAGVQAYVTADLRHHPADEHRRASGVALVDVAHWASEFPWCDQAADLLRSRFGAALPVRV 362 Query 361 CTICTDPWNL---DHETG 375 CTI TDPWN+ ETG Sbjct 363 CTIRTDPWNMGGCSDETG 380 >gi|41408080|ref|NP_960916.1| hypothetical protein MAP1982c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396435|gb|AAS04299.1| hypothetical protein MAP_1982c [Mycobacterium avium subsp. paratuberculosis K-10] Length=377 Score = 544 bits (1402), Expect = 9e-153, Method: Compositional matrix adjust. Identities = 303/376 (81%), Positives = 333/376 (89%), Gaps = 0/376 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSV+LADVI VLDQAYPP LA+ WDSVGLVCGDPD+ V+SVTVAVDATPAVVD+VP GL Sbjct 1 MSVKLADVIAVLDQAYPPWLAEPWDSVGLVCGDPDEPVESVTVAVDATPAVVDEVPAGGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+TPKG LVHRLIR+GRSLFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAASTPKGALVHRLIRSGRSLFTAHTNADSASPGVSDALAEALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+AVL+P A+DLDKWVIYVP EN++AVR AVF AGAGHIGDYSHCSWSV G GQFL H Sbjct 121 VEAVLEPARPASDLDKWVIYVPGENADAVREAVFAAGAGHIGDYSHCSWSVTGIGQFLPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+GSVG VERVAE+RVEVVAPARARA VL AMRAAHPYEEPAFDIFAL+PPP + Sbjct 181 EGASPALGSVGQVERVAEERVEVVAPARARAAVLTAMRAAHPYEEPAFDIFALLPPPGDA 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIGRLP+PEPLR FV+R++AALP T+ GVRAAGDP+L VSRVAVCGGAGDSLLA A Sbjct 241 GLGRIGRLPQPEPLRRFVSRVDAALPATSWGVRAAGDPELAVSRVAVCGGAGDSLLAAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAY+TADLRHHPADEH RAS+VALIDVAHWASEFPWC QAA++LRS FG L VRV Sbjct 301 GAGVQAYLTADLRHHPADEHRRASEVALIDVAHWASEFPWCAQAADLLRSRFGERLDVRV 360 Query 361 CTICTDPWNLDHETGR 376 I TDPWN+ H+ G Sbjct 361 SAIRTDPWNVGHDGGE 376 >gi|342857252|ref|ZP_08713908.1| hypothetical protein MCOL_00200 [Mycobacterium colombiense CECT 3035] gi|342134585|gb|EGT87751.1| hypothetical protein MCOL_00200 [Mycobacterium colombiense CECT 3035] Length=380 Score = 543 bits (1398), Expect = 2e-152, Method: Compositional matrix adjust. Identities = 298/371 (81%), Positives = 333/371 (90%), Gaps = 0/371 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLA+VI VLD+AYPPRLA+SWDSVGLVCGDPDD ++SVTVAVDATPAVVD+VP A L Sbjct 1 MSVRLAEVIAVLDEAYPPRLAESWDSVGLVCGDPDDELESVTVAVDATPAVVDEVPPASL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVD+VAA+TPKG LVHRLIRTGRSLFTAHTNADSA PGVSDALA A+GL Sbjct 61 LLAHHPLLLRGVDSVAASTPKGALVHRLIRTGRSLFTAHTNADSARPGVSDALAEALGLD 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+AVL+PV A D+DKWV+YVP EN+EAV+AAVF AGAGHIGDYSHCSW+V+G GQFL H Sbjct 121 VEAVLEPVSDAPDIDKWVVYVPAENAEAVQAAVFAAGAGHIGDYSHCSWTVSGIGQFLPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+GSVG VERVAEDR EVVAPAR+RA VLAAMRAAHPYEEPAFDIFA+VPPP + Sbjct 181 EGASPAVGSVGNVERVAEDRFEVVAPARSRAAVLAAMRAAHPYEEPAFDIFAMVPPPGDA 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR+G L +PEPLR+FV+R+ AALP T+ GVRAAGDP++ VSRVAVCGGAGDSLLA A Sbjct 241 GLGRVGMLARPEPLRSFVSRVGAALPRTSWGVRAAGDPEMPVSRVAVCGGAGDSLLAAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAYVTADLRHHPADEH RAS+VALIDVAHWASEFPWC QAA +LRS FGA LPVRV Sbjct 301 GAGVQAYVTADLRHHPADEHRRASEVALIDVAHWASEFPWCEQAAGLLRSRFGAELPVRV 360 Query 361 CTICTDPWNLD 371 +I TDPWN++ Sbjct 361 SSIRTDPWNVE 371 >gi|336461841|gb|EGO40697.1| dinuclear metal center protein, YbgI/SA1388 family [Mycobacterium avium subsp. paratuberculosis S397] Length=377 Score = 542 bits (1396), Expect = 4e-152, Method: Compositional matrix adjust. Identities = 302/376 (81%), Positives = 332/376 (89%), Gaps = 0/376 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSV+LADVI VLDQ YPP LA+ WDSVGLVCGDPD+ V+SVTVAVDATPAVVD+VP GL Sbjct 1 MSVKLADVIAVLDQDYPPWLAEPWDSVGLVCGDPDEPVESVTVAVDATPAVVDEVPAGGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+TPKG LVHRLIR+GRSLFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAASTPKGALVHRLIRSGRSLFTAHTNADSASPGVSDALAEALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+AVL+P A+DLDKWVIYVP EN++AVR AVF AGAGHIGDYSHCSWSV G GQFL H Sbjct 121 VEAVLEPARPASDLDKWVIYVPGENADAVREAVFAAGAGHIGDYSHCSWSVTGIGQFLPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+GSVG VERVAE+RVEVVAPARARA VL AMRAAHPYEEPAFDIFAL+PPP + Sbjct 181 EGASPALGSVGQVERVAEERVEVVAPARARAAVLTAMRAAHPYEEPAFDIFALLPPPGDA 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIGRLP+PEPLR FV+R++AALP T+ GVRAAGDP+L VSRVAVCGGAGDSLLA A Sbjct 241 GLGRIGRLPQPEPLRRFVSRVDAALPATSWGVRAAGDPELAVSRVAVCGGAGDSLLAAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAY+TADLRHHPADEH RAS+VALIDVAHWASEFPWC QAA++LRS FG L VRV Sbjct 301 GAGVQAYLTADLRHHPADEHRRASEVALIDVAHWASEFPWCAQAADLLRSRFGERLDVRV 360 Query 361 CTICTDPWNLDHETGR 376 I TDPWN+ H+ G Sbjct 361 SAIRTDPWNVGHDGGE 376 >gi|254822752|ref|ZP_05227753.1| hypothetical protein MintA_22674 [Mycobacterium intracellulare ATCC 13950] Length=382 Score = 535 bits (1378), Expect = 5e-150, Method: Compositional matrix adjust. Identities = 299/378 (80%), Positives = 332/378 (88%), Gaps = 3/378 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSV+LADVI VLD+AYPPRLA++WDSVGLVCGDPDD ++SVTVAVDATPAVVD+VP AGL Sbjct 1 MSVKLADVIAVLDEAYPPRLAEAWDSVGLVCGDPDDKLESVTVAVDATPAVVDEVPDAGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+TPKG LVHR+IRTGRSLFTAHTNADSA+PGVSDALA A+GL Sbjct 61 LLAHHPLLLRGVDTVAASTPKGALVHRMIRTGRSLFTAHTNADSANPGVSDALAAALGLE 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+A L+P GA LDKWVIYVP EN+EAV+AAVF+AGAGHIGDYSHCSW+V G GQFL H Sbjct 121 VEAALEPATGAPGLDKWVIYVPNENAEAVQAAVFDAGAGHIGDYSHCSWTVTGIGQFLPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+GSVG VERV EDR EVVAPAR RA VLAA+RAAHPYEEPAFDIFA+VPPP + Sbjct 181 EGASPAVGSVGNVERVPEDRFEVVAPARVRAAVLAALRAAHPYEEPAFDIFAMVPPPGDA 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR+G L +PEPLR FV+R+ AALP T+ GVRAAGDPD+ VSRVAVCGGAGDSLLA A Sbjct 241 GLGRVGMLARPEPLRDFVSRVHAALPRTSWGVRAAGDPDMPVSRVAVCGGAGDSLLAAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAYVTADLRHHPADEH RAS VALIDVAHWASEFPWC QAA++LRS FGA L VRV Sbjct 301 GAGVQAYVTADLRHHPADEHRRASDVALIDVAHWASEFPWCEQAADLLRSRFGAELAVRV 360 Query 361 CTICTDPWNL---DHETG 375 I TDPWN+ D+E+G Sbjct 361 SAIRTDPWNVERGDNESG 378 >gi|240172444|ref|ZP_04751103.1| hypothetical protein MkanA1_24230 [Mycobacterium kansasii ATCC 12478] Length=378 Score = 533 bits (1373), Expect = 2e-149, Method: Compositional matrix adjust. Identities = 314/375 (84%), Positives = 340/375 (91%), Gaps = 0/375 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVI+VLDQAYPPRLA+SWDSVGLVCGDP DVVDSVTVAVDAT AVVD+VP+ GL Sbjct 1 MSVRLADVIEVLDQAYPPRLAESWDSVGLVCGDPADVVDSVTVAVDATAAVVDEVPEGGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+TPKG LVHRLIR+GRSLFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAASTPKGALVHRLIRSGRSLFTAHTNADSASPGVSDALAQALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+ VLDP+ G+AD DKWVIYVPRE+++AVRAAVF+AGAGHIGDYSHCSWSV GTGQFLA Sbjct 121 VEGVLDPLSGSADQDKWVIYVPRESADAVRAAVFDAGAGHIGDYSHCSWSVTGTGQFLAL 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPAIG++GTVE+V EDRVEVVAPARARA VLAAMRAAHPYEEPAFDIF LVPPP G Sbjct 181 EGASPAIGAIGTVEQVPEDRVEVVAPARARAAVLAAMRAAHPYEEPAFDIFTLVPPPAGV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRIG LPKPEPLR FV+R+ AALP T+ GVRAAGDP L VSRVAVCGGAGDSLL A Sbjct 241 GLGRIGALPKPEPLRDFVSRVCAALPATSWGVRAAGDPGLPVSRVAVCGGAGDSLLGAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AA+VQAYVTADLRHHPADEHCR+S VALID+AHWASEFPWC QAA +LRSHFGASLPVRV Sbjct 301 AAEVQAYVTADLRHHPADEHCRSSPVALIDLAHWASEFPWCDQAAGMLRSHFGASLPVRV 360 Query 361 CTICTDPWNLDHETG 375 TI TDPWN+ G Sbjct 361 STIRTDPWNVATRPG 375 >gi|118471522|ref|YP_888584.1| hypothetical protein MSMEG_4307 [Mycobacterium smegmatis str. MC2 155] gi|118172809|gb|ABK73705.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=383 Score = 527 bits (1357), Expect = 1e-147, Method: Compositional matrix adjust. Identities = 276/369 (75%), Positives = 312/369 (85%), Gaps = 0/369 (0%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGLLL 62 VRLADVI VL+ AYPP+LAQ WDSVGLVCGDPD+ V+SVT+AVDAT V+ +VP GLLL Sbjct 8 VRLADVIAVLEAAYPPQLAQDWDSVGLVCGDPDEPVESVTIAVDATADVIAEVPDRGLLL 67 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 HHPLLLRGVDTVAA+T KG L+HRLIRTGR+LFTAHTNADSA+PGVSDALA +GL V+ Sbjct 68 AHHPLLLRGVDTVAASTAKGALIHRLIRTGRALFTAHTNADSANPGVSDALAETLGLRVE 127 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 VL PV +LDKWV++VP +++A+R A+F AGAG IGDYSHCSWSVAGTGQFL HDG Sbjct 128 DVLSPVAAGPNLDKWVVFVPAADADALREALFAAGAGRIGDYSHCSWSVAGTGQFLPHDG 187 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSGL 242 ASPAIG VGTVE+V+EDRVEV+APAR RA+VLAAMRAAHPYEEPAFDI L P P G+ Sbjct 188 ASPAIGEVGTVEQVSEDRVEVIAPARLRAKVLAAMRAAHPYEEPAFDILPLAPIPGDVGI 247 Query 243 GRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAA 302 GRI LP+PEPL FV R+ AALPPT+ GVRA+GDPD +VSRVAVCGGAGDSLL V AA Sbjct 248 GRIASLPEPEPLSAFVRRVRAALPPTSWGVRASGDPDAVVSRVAVCGGAGDSLLGAVTAA 307 Query 303 DVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRVCT 362 VQAYVTADLRHHPADEH RAS VAL+DVAHWASEFPWC QAA VLR HF +LPVRVC Sbjct 308 GVQAYVTADLRHHPADEHRRASDVALVDVAHWASEFPWCAQAAGVLRKHFSDALPVRVCE 367 Query 363 ICTDPWNLD 371 + TDPWN++ Sbjct 368 VRTDPWNVE 376 >gi|118464583|ref|YP_881417.1| hypothetical protein MAV_2209 [Mycobacterium avium 104] gi|254774918|ref|ZP_05216434.1| hypothetical protein MaviaA2_09625 [Mycobacterium avium subsp. avium ATCC 25291] gi|118165870|gb|ABK66767.1| conserved hypothetical protein [Mycobacterium avium 104] Length=378 Score = 526 bits (1356), Expect = 2e-147, Method: Compositional matrix adjust. Identities = 302/378 (80%), Positives = 334/378 (89%), Gaps = 0/378 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSV+LADVI VLD+AYPP LA+ WDSVGLVCGDPD+ V+SVTVAVDATPAVVD+VP GL Sbjct 1 MSVKLADVIAVLDEAYPPGLAEPWDSVGLVCGDPDEPVESVTVAVDATPAVVDEVPAGGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+TPKG LVHRLIRTGRSLFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAASTPKGALVHRLIRTGRSLFTAHTNADSASPGVSDALADALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+AVL+P A+DLDKWVIYVP EN++AVR AVF AGAGHIGDYSHCSWSV G GQFL H Sbjct 121 VEAVLEPARPASDLDKWVIYVPGENADAVREAVFAAGAGHIGDYSHCSWSVTGIGQFLPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+GSVG VERVAE+RVEVVAPARARA VLAAMRAAHPYEEPAFDIFAL+PPP + Sbjct 181 EGASPAVGSVGRVERVAEERVEVVAPARARAAVLAAMRAAHPYEEPAFDIFALLPPPGDA 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRI RL PEPLR FV+R++AALP T+ GVRAAGDP+L VSRVAVCGGAGDSLLA A Sbjct 241 GLGRIARLEYPEPLRRFVSRVDAALPATSWGVRAAGDPELAVSRVAVCGGAGDSLLAAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAY+TADLRHHPADEH RAS+VALIDVAHWASEFPWC QAA++LRS FG L VRV Sbjct 301 GAGVQAYLTADLRHHPADEHRRASEVALIDVAHWASEFPWCAQAADLLRSRFGGRLDVRV 360 Query 361 CTICTDPWNLDHETGRDQ 378 +I TDPWN++H+ G + Sbjct 361 SSIRTDPWNVEHDGGEGR 378 >gi|108800310|ref|YP_640507.1| hypothetical protein Mmcs_3344 [Mycobacterium sp. MCS] gi|119869438|ref|YP_939390.1| hypothetical protein Mkms_3406 [Mycobacterium sp. KMS] gi|126435933|ref|YP_001071624.1| hypothetical protein Mjls_3355 [Mycobacterium sp. JLS] gi|108770729|gb|ABG09451.1| protein of unknown function DUF34 [Mycobacterium sp. MCS] gi|119695527|gb|ABL92600.1| protein of unknown function DUF34 [Mycobacterium sp. KMS] gi|126235733|gb|ABN99133.1| protein of unknown function DUF34 [Mycobacterium sp. JLS] Length=379 Score = 526 bits (1354), Expect = 3e-147, Method: Compositional matrix adjust. Identities = 278/379 (74%), Positives = 316/379 (84%), Gaps = 2/379 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 MSVRLADVI VLD+AYPPRLA+ WDSVGLVCGDPD+ V+SVTVAVDAT AV+ +VP+ GL Sbjct 1 MSVRLADVIGVLDEAYPPRLAEDWDSVGLVCGDPDEPVESVTVAVDATEAVIAEVPERGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVD+VAA+TPKG LVH LIRTGRSLFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDSVAASTPKGALVHSLIRTGRSLFTAHTNADSASPGVSDALADALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+ VL P+ +LDKWV+YVP EN++AVR A+F AGAG IGDYSHCSWS GTGQFL H Sbjct 121 VEEVLSPIAADTELDKWVVYVPAENADAVREAMFGAGAGQIGDYSHCSWSAPGTGQFLPH 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+GSVG+VERVAE+RVEV+AP+ R ++L A+R AHPYEEPAFDIF + P P Sbjct 181 EGASPAVGSVGSVERVAEERVEVIAPSARRRDLLNAVRGAHPYEEPAFDIFDIAPIPGDV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 G+GRI LP PE L FV+R+ AALP T GVRAAGDP +VSRVAVCGGAGDSLL V+ Sbjct 241 GIGRIASLPTPETLSDFVSRVNAALPATTWGVRAAGDPSTVVSRVAVCGGAGDSLLGAVS 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAY+TADLRHHPADEH RAS VAL+DVAHWASEFPWC QAA VLR HF +LPVRV Sbjct 301 RAGVQAYLTADLRHHPADEHRRASPVALVDVAHWASEFPWCEQAAGVLRRHFSDALPVRV 360 Query 361 CTICTDPWNLDHETGRDQA 379 C + TDPWNL TGR+ + Sbjct 361 CALRTDPWNLG--TGRETS 377 >gi|333990304|ref|YP_004522918.1| hypothetical protein JDM601_1664 [Mycobacterium sp. JDM601] gi|333486272|gb|AEF35664.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=377 Score = 521 bits (1341), Expect = 9e-146, Method: Compositional matrix adjust. Identities = 294/376 (79%), Positives = 317/376 (85%), Gaps = 0/376 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 M+ RLADVIDVLD AYPP LAQSWDSVGLVCGDPDDVV SVT+AVDAT AVVD+VP GL Sbjct 1 MTARLADVIDVLDAAYPPELAQSWDSVGLVCGDPDDVVGSVTIAVDATAAVVDEVPDGGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+TPKG LVHRLIR+GR+LFTAHTNADSASPGVSDALA A+GLT Sbjct 61 LLAHHPLLLRGVDTVAASTPKGSLVHRLIRSGRALFTAHTNADSASPGVSDALADALGLT 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V+AVL+P A D DKWVIY P E++EAVRAAVF AGAGHIGDY+ CSW V GTGQFL Sbjct 121 VEAVLEPATQAPDTDKWVIYTPIEHAEAVRAAVFAAGAGHIGDYTQCSWGVTGTGQFLPG 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGA P IG VG VERVAEDR+EVVAPARAR V AA+ AAHPYEEPAFD+FAL P P G Sbjct 181 DGADPTIGRVGAVERVAEDRIEVVAPARARGRVRAALLAAHPYEEPAFDVFALQPLPAGV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 G+GRIG L PEPL TFVAR+ A LP TA GVRAAGDPDL VSRVAVCGGAGDSLL A Sbjct 241 GIGRIGSLAVPEPLSTFVARVAAGLPATAWGVRAAGDPDLPVSRVAVCGGAGDSLLDAAA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 AAD QAYVTADLRHHPADEH R S VAL+DV+HWASE+PWC QAA+VLRSHFGA+LPVRV Sbjct 301 AADAQAYVTADLRHHPADEHARRSTVALVDVSHWASEYPWCAQAADVLRSHFGAALPVRV 360 Query 361 CTICTDPWNLDHETGR 376 + TDPWNL E R Sbjct 361 SALRTDPWNLAFEGDR 376 >gi|145223477|ref|YP_001134155.1| hypothetical protein Mflv_2890 [Mycobacterium gilvum PYR-GCK] gi|145215963|gb|ABP45367.1| protein of unknown function DUF34 [Mycobacterium gilvum PYR-GCK] Length=373 Score = 515 bits (1326), Expect = 5e-144, Method: Compositional matrix adjust. Identities = 275/371 (75%), Positives = 304/371 (82%), Gaps = 0/371 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 M+VRLADVIDVLD AYPPRLAQSWDSVGLVCGDP + V+SVT+AVDAT V+ QVPQ GL Sbjct 1 MAVRLADVIDVLDAAYPPRLAQSWDSVGLVCGDPSEPVESVTIAVDATADVLAQVPQGGL 60 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+T KG L+H IRTGRSLFTAHTNADSASPGVSDALA +GL Sbjct 61 LLAHHPLLLRGVDTVAADTAKGALIHSAIRTGRSLFTAHTNADSASPGVSDALAETLGLE 120 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V VL PVP LDKW ++VP EN+EAVR A+F AGAGHIGDYS CSWSV+GTGQFL Sbjct 121 VCEVLSPVPSGPSLDKWAVFVPAENAEAVRTAMFAAGAGHIGDYSQCSWSVSGTGQFLPG 180 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+G+VG VER+AEDRVE+VAP RA VLA +RAAHPYEEPAFD+F L PP Sbjct 181 EGASPAVGAVGAVERLAEDRVEMVAPTSRRAAVLAGLRAAHPYEEPAFDLFPLQTPPGDV 240 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRI L + EPL FV+R+ AALP T+ GVRAAGDP VSRVAVCGGAGDSLLA VA Sbjct 241 GLGRIATLREAEPLAAFVSRVRAALPATSWGVRAAGDPAATVSRVAVCGGAGDSLLAEVA 300 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAYVTADLRHHPADEH R S VALIDVAHWASEFPWC QAAE+LR FG +LPV V Sbjct 301 GAGVQAYVTADLRHHPADEHRRVSDVALIDVAHWASEFPWCAQAAELLRGQFGPALPVTV 360 Query 361 CTICTDPWNLD 371 + TDPWN++ Sbjct 361 SDVRTDPWNVE 371 >gi|315443838|ref|YP_004076717.1| hypothetical protein Mspyr1_22330 [Mycobacterium sp. Spyr1] gi|315262141|gb|ADT98882.1| conserved hypothetical protein TIGR00486 [Mycobacterium sp. Spyr1] Length=378 Score = 514 bits (1325), Expect = 7e-144, Method: Compositional matrix adjust. Identities = 274/371 (74%), Positives = 304/371 (82%), Gaps = 0/371 (0%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL 60 ++VRLADVIDVLD AYPPRLAQSWDSVGLVCGDP + V+SVT+AVDAT V+ QVPQ GL Sbjct 6 LAVRLADVIDVLDAAYPPRLAQSWDSVGLVCGDPSEPVESVTIAVDATADVLAQVPQGGL 65 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LL HHPLLLRGVDTVAA+T KG L+H IRTGRSLFTAHTNADSASPGVSDALA +GL Sbjct 66 LLAHHPLLLRGVDTVAADTAKGALIHSAIRTGRSLFTAHTNADSASPGVSDALAETLGLE 125 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V VL PVP LDKW ++VP EN+EAVR A+F AGAGHIGDYS CSWSV+GTGQFL Sbjct 126 VCEVLSPVPSGPSLDKWAVFVPAENAEAVRTAMFAAGAGHIGDYSQCSWSVSGTGQFLPG 185 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 +GASPA+G+VG VER+AEDRVE+VAP RA VLA +RAAHPYEEPAFD+F L PP Sbjct 186 EGASPAVGAVGAVERLAEDRVEMVAPTSRRAAVLAGLRAAHPYEEPAFDLFPLQTPPGDV 245 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGRI L + EPL FV+R+ AALP T+ GVRAAGDP VSRVAVCGGAGDSLLA VA Sbjct 246 GLGRIATLREAEPLAAFVSRVRAALPATSWGVRAAGDPAATVSRVAVCGGAGDSLLAEVA 305 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 A VQAYVTADLRHHPADEH R S VALIDVAHWASEFPWC QAAE+LR FG +LPV V Sbjct 306 GAGVQAYVTADLRHHPADEHRRVSDVALIDVAHWASEFPWCAQAAELLRGQFGPALPVTV 365 Query 361 CTICTDPWNLD 371 + TDPWN++ Sbjct 366 SDVRTDPWNVE 376 >gi|120404588|ref|YP_954417.1| hypothetical protein Mvan_3620 [Mycobacterium vanbaalenii PYR-1] gi|119957406|gb|ABM14411.1| protein of unknown function DUF34 [Mycobacterium vanbaalenii PYR-1] Length=374 Score = 505 bits (1301), Expect = 4e-141, Method: Compositional matrix adjust. Identities = 269/370 (73%), Positives = 307/370 (83%), Gaps = 0/370 (0%) Query 2 SVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGLL 61 +VRL DVIDVL+ AYPP LAQSWDSVGLVCGDP + V+SVT+AVDATP VV VP LL Sbjct 3 TVRLVDVIDVLEAAYPPGLAQSWDSVGLVCGDPTEPVESVTIAVDATPQVVASVPDRALL 62 Query 62 LVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTV 121 LVHHPLLLRGVD+VAA+T KG L+H LIRTGR+LFTAHTNADSASPGVSDALA A+GL V Sbjct 63 LVHHPLLLRGVDSVAADTAKGALIHSLIRTGRALFTAHTNADSASPGVSDALADALGLQV 122 Query 122 DAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHD 181 VL PVP LDKWV++VP N+EAVR+A+F GAG +GDYS CSWSV+GTGQFL D Sbjct 123 CDVLSPVPSGPALDKWVVFVPAGNAEAVRSAMFAGGAGQLGDYSQCSWSVSGTGQFLPGD 182 Query 182 GASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSG 241 GA+PAIGSVGT+E+VAEDRVE+VAPA RA VLA +RAAHPYEEPAFD+ AL PP G Sbjct 183 GATPAIGSVGTLEQVAEDRVEMVAPASRRAAVLAGLRAAHPYEEPAFDVVALQTPPGDVG 242 Query 242 LGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAA 301 LGRI LP+PEPL FV+R+ ALP T+ GVRA+GDP V+RVAVCGG+GDSLL+ VAA Sbjct 243 LGRIATLPEPEPLPAFVSRVRRALPATSWGVRASGDPATTVARVAVCGGSGDSLLSEVAA 302 Query 302 ADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRVC 361 + VQAYVTADLRHHPADEH R+S VALID AHWA+EFPWC QAAE+LR HFGASLPV V Sbjct 303 SGVQAYVTADLRHHPADEHRRSSDVALIDAAHWATEFPWCNQAAELLRHHFGASLPVTVS 362 Query 362 TICTDPWNLD 371 + TDPWN++ Sbjct 363 DVRTDPWNIE 372 >gi|169628991|ref|YP_001702640.1| hypothetical protein MAB_1903 [Mycobacterium abscessus ATCC 19977] gi|169240958|emb|CAM61986.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=379 Score = 442 bits (1138), Expect = 3e-122, Method: Compositional matrix adjust. Identities = 254/381 (67%), Positives = 290/381 (77%), Gaps = 4/381 (1%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQV--PQA 58 M VRLAD+I VLD AYPP LA+SWDSVGLVCGDPD +D+VTVAVDAT AVVD++ P A Sbjct 1 MGVRLADIIGVLDAAYPPALAESWDSVGLVCGDPDQQIDTVTVAVDATAAVVDEMDGPGA 60 Query 59 GLLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVG 118 LLL HHPLLLRGVDTVAA+TPKG LVHRLIR G +LFTAHTNADSASPGVSDALA A+G Sbjct 61 HLLLAHHPLLLRGVDTVAASTPKGALVHRLIRAGGALFTAHTNADSASPGVSDALAQALG 120 Query 119 LTVDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFL 178 LTV +VL P D DKWV++VP E+ AVR A+FEAGAGHIG YS CSWSV GTGQF Sbjct 121 LTVTSVL--APRFTDYDKWVVFVPTESVHAVRRAMFEAGAGHIGAYSDCSWSVTGTGQFR 178 Query 179 AHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPV 238 G+ PA+G G VE+V EDRVE+VAP+R R E+ AA++AAHPYE PA D+ + P P Sbjct 179 PLAGSDPAVGEHGVVEQVVEDRVEMVAPSRLRCELFAAIQAAHPYEVPAIDVLPMAPAPS 238 Query 239 GSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLAT 298 G+GLGRIG LP PE LR FV+R+ ALP T GVRAAGDPD L+ VAVCGGAGDSLL Sbjct 239 GTGLGRIGALPTPETLRDFVSRVRGALPETVWGVRAAGDPDELIQTVAVCGGAGDSLLGA 298 Query 299 VAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPV 358 + YVTADLRHHPADEH R S VAL+DVAHWASEFPWC QAA VL + FG +L Sbjct 299 AVKSGADVYVTADLRHHPADEHARTSSVALVDVAHWASEFPWCAQAARVLDTEFGENLST 358 Query 359 RVCTICTDPWNLDHETGRDQA 379 R+ + TDPW L ++A Sbjct 359 RISPVRTDPWTLGGPEKEEKA 379 >gi|333918913|ref|YP_004492494.1| hypothetical protein AS9A_1242 [Amycolicicoccus subflavus DQS3-9A1] gi|333481134|gb|AEF39694.1| hypothetical protein AS9A_1242 [Amycolicicoccus subflavus DQS3-9A1] Length=386 Score = 430 bits (1105), Expect = 2e-118, Method: Compositional matrix adjust. Identities = 223/371 (61%), Positives = 265/371 (72%), Gaps = 4/371 (1%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--L 60 V + D+ LD AYPP LA+ WDSVGLVCGDPDD V V VDAT AVV++ + G L Sbjct 14 VSVGDITQCLDDAYPPALAEPWDSVGLVCGDPDDAVTRVMFTVDATAAVVEEALEWGADL 73 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 L+ HHPLLLRGVDTV A+TPKG L+HRLIR+G +LFTAHTNADSA PGVSDALA A+GLT Sbjct 74 LVAHHPLLLRGVDTVGAHTPKGALIHRLIRSGCALFTAHTNADSADPGVSDALADALGLT 133 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V L + DKW++YVP+ ++ AV A+F AGAG IG+Y+ C WSV G+GQF Sbjct 134 VQGPLSS-KNDSPADKWIVYVPQSDAHAVSRAMFAAGAGQIGEYTECGWSVTGSGQFRPG 192 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 D A+P IGS+G +E V EDRVE+VAP RA VL+A+R AHPYEEPAFD+ L P Sbjct 193 DDANPTIGSLGELELVTEDRVEMVAPRSLRALVLSALREAHPYEEPAFDVVELAAMPTAH 252 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR+ LP+PE F R+ A LP T+ GVRAAGDP +V RVAVCGGAGDS LA A Sbjct 253 GLGRVAALPEPETFEAFTQRVAARLPRTSWGVRAAGDPHRMVERVAVCGGAGDSFLALAA 312 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGA-SLPVR 359 V AYVT+DLRHHPADEH RA AL+DVAHWASEFPWCGQA V++ FG + R Sbjct 313 KLGVDAYVTSDLRHHPADEHLRAGGPALVDVAHWASEFPWCGQARSVVQDAFGVRGVETR 372 Query 360 VCTICTDPWNL 370 + + TDPW + Sbjct 373 ISEVRTDPWTI 383 >gi|111018196|ref|YP_701168.1| hypothetical protein RHA1_ro01183 [Rhodococcus jostii RHA1] gi|110817726|gb|ABG93010.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=379 Score = 427 bits (1097), Expect = 2e-117, Method: Compositional matrix adjust. Identities = 241/372 (65%), Positives = 278/372 (75%), Gaps = 5/372 (1%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--L 60 VRLADVI LD AYPP LA+SWDSVGLVCGDPDD V +VT+AVD T VVD+ AG L Sbjct 4 VRLADVIAALDAAYPPALAESWDSVGLVCGDPDDTVTTVTIAVDPTAEVVDEAIDAGADL 63 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLLRGVDTV A+TPKG LVH+LI+ G +LFTAHTNADSA PGVSDALA A+GLT Sbjct 64 LLVHHPLLLRGVDTVGAHTPKGALVHKLIKAGCALFTAHTNADSADPGVSDALAAALGLT 123 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V +DP P DLDKWV+ VP +++ VR A+F+AGAGHIG+Y +CSWSV G GQFL Sbjct 124 VTGPIDPHP-TEDLDKWVVLVPAGDADTVRRALFDAGAGHIGNYRNCSWSVTGQGQFLPT 182 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGA+P +G+VG +ERV E RVEV+AP R +VLAAMRAAHPYEE AFD+F + P Sbjct 183 DGANPTLGAVGALERVEESRVEVIAPRGIRQKVLAAMRAAHPYEEVAFDVFEMATFPGPR 242 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR G LP+P LR F R+ ALP T GVRAAGDP+ + VAVCGG+GDS L V+ Sbjct 243 GLGRFGELPEPLSLRDFTDRVADALPATTWGVRAAGDPEATIRTVAVCGGSGDSYLDAVS 302 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS--LPV 358 V AYVTADLRHHPADEH RA ALIDVAHWASE PWC QA VL + FG + V Sbjct 303 RLGVDAYVTADLRHHPADEHLRAGGPALIDVAHWASEQPWCDQAKGVLDAAFGRTPEWQV 362 Query 359 RVCTICTDPWNL 370 RV + TDPW++ Sbjct 363 RVSAVRTDPWSV 374 >gi|226307147|ref|YP_002767107.1| hypothetical protein RER_36600 [Rhodococcus erythropolis PR4] gi|226186264|dbj|BAH34368.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=377 Score = 425 bits (1092), Expect = 8e-117, Method: Compositional matrix adjust. Identities = 241/370 (66%), Positives = 273/370 (74%), Gaps = 5/370 (1%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 LADVI VL+ AYPP LA+SWDSVGLVCGDP D V V AVD T AVVD +G LL+ Sbjct 6 LADVIAVLESAYPPALAESWDSVGLVCGDPADPVTRVVFAVDPTEAVVDDAIASGADLLV 65 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGVDTV A+TPKG LVH+LI+ G +LF+AHTNADSA PGVSDALA A+GLTV Sbjct 66 VHHPLLLRGVDTVGAHTPKGALVHKLIKAGCALFSAHTNADSADPGVSDALAQALGLTVL 125 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 ++P P LDKWV+ VP EN+ AV+ A+FEAGAG IGDYS CSW+V GTGQFL DG Sbjct 126 RPIEPKP-TQPLDKWVVMVPVENASAVQDALFEAGAGRIGDYSQCSWTVTGTGQFLPADG 184 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSGL 242 A+P IG+VG VE+V EDRVEV+AP R+ VL A+RAAHPYEEPAFD+F L P GL Sbjct 185 ANPTIGTVGAVEQVREDRVEVIAPRGKRSAVLGALRAAHPYEEPAFDVFELAAFPSSLGL 244 Query 243 GRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAA 302 GR+G L PE LR F AR+ +LP T GVRAAGDPD V VAVCGG+GDS L VAA Sbjct 245 GRVGELEHPETLREFTARVARSLPSTEWGVRAAGDPDATVRTVAVCGGSGDSYLDVVAAL 304 Query 303 DVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS--LPVRV 360 YVTADLRHHPADEH RA AL+DVAHWASE+PWC QA VL + F + RV Sbjct 305 GADVYVTADLRHHPADEHLRAGGPALVDVAHWASEYPWCAQAKSVLDAAFADNPGWESRV 364 Query 361 CTICTDPWNL 370 TI TDPW L Sbjct 365 STIRTDPWCL 374 >gi|229490321|ref|ZP_04384163.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229322853|gb|EEN88632.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=377 Score = 421 bits (1082), Expect = 1e-115, Method: Compositional matrix adjust. Identities = 238/370 (65%), Positives = 272/370 (74%), Gaps = 5/370 (1%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 LA VI VL+ AYPP LA+SWDSVGLVCGDP D V V AVD T AVVD +G LL+ Sbjct 6 LAGVIAVLESAYPPALAESWDSVGLVCGDPADAVTRVVFAVDPTEAVVDDAIASGADLLV 65 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGVDTV A+TPKG LVH+LI+ G +LF+AHTNADSA PGVSDALA A+GLTV Sbjct 66 VHHPLLLRGVDTVGAHTPKGALVHKLIKAGCALFSAHTNADSADPGVSDALAQALGLTVL 125 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 ++P P LDKWV+ VP EN+ AV+ A+FEAGAG IGDYS CSW+V GTGQFL DG Sbjct 126 RPIEPKP-TQPLDKWVVMVPVENASAVQDALFEAGAGRIGDYSQCSWTVTGTGQFLPADG 184 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSGL 242 A+P IG+VG VE+V E+RVEV+AP R+ VL A+RA+HPYEEPAFD+F L P GL Sbjct 185 ANPTIGTVGAVEQVRENRVEVIAPRGKRSAVLGALRASHPYEEPAFDVFELAAFPSSLGL 244 Query 243 GRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAA 302 GR+G L PE LR F AR+ +LP T GVRAAGDPD V VAVCGG+GDS L VAA Sbjct 245 GRLGELDHPETLREFTARVARSLPSTEWGVRAAGDPDATVRTVAVCGGSGDSYLDVVAAL 304 Query 303 DVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS--LPVRV 360 YVTADLRHHPADEH RA AL+DVAHWASE+PWC QA VL + F + RV Sbjct 305 GADVYVTADLRHHPADEHLRAGGPALVDVAHWASEYPWCAQAKSVLDAAFADNPEWESRV 364 Query 361 CTICTDPWNL 370 TI TDPW L Sbjct 365 STIRTDPWCL 374 >gi|331696746|ref|YP_004332985.1| NGG1p interacting factor 3 protein, NIF3 [Pseudonocardia dioxanivorans CB1190] gi|326951435|gb|AEA25132.1| NGG1p interacting factor 3 protein, NIF3 [Pseudonocardia dioxanivorans CB1190] Length=383 Score = 418 bits (1074), Expect = 1e-114, Method: Compositional matrix adjust. Identities = 238/379 (63%), Positives = 276/379 (73%), Gaps = 10/379 (2%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG- 59 MSVRL DV+ L+ AYPPRLA WD+VGLVCGDPDD V V VAVD V++ QAG Sbjct 1 MSVRLRDVVAALEAAYPPRLAADWDAVGLVCGDPDDAVARVHVAVDPVVETVEEALQAGA 60 Query 60 -LLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVG 118 LL+ HHPLLLRGV V A+TPKG L+H+LIR G LFTAHTNADSA PGVSDALA A+G Sbjct 61 DLLVTHHPLLLRGVHGVGADTPKGALLHKLIRGGAGLFTAHTNADSADPGVSDALAAAIG 120 Query 119 LTVDAVLDPVPGAADLDKWVIYVPRENSEA-VRAAVFEAGAGHIGDYSHCSWSVAGTGQF 177 LTV L P G A LDK V +VP A V A+ +AGAG IGDYSHCS++ AGTGQF Sbjct 121 LTVTGPLQPAAGPA-LDKIVAFVPTGPVLATVHEALSQAGAGEIGDYSHCSFATAGTGQF 179 Query 178 LAHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPP 237 L H+GA+P IG+VG +ERVAE R+E+V P RA+V+AA+ A+HPYEEPA+D+F L P Sbjct 180 LPHEGANPTIGAVGRLERVAETRLEMVLPRHRRADVVAALLASHPYEEPAYDVFELAALP 239 Query 238 VGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLA 297 +GLGRIG L + EPL F R+ A LP TA GVRAAGDPD LV RVAVCGGAGDS L Sbjct 240 SATGLGRIGLLDEAEPLSAFADRVAAGLPSTAWGVRAAGDPDRLVRRVAVCGGAGDSALE 299 Query 298 TVAAADVQAYVTADLRHHPADEHC------RASQVALIDVAHWASEFPWCGQAAEVLRSH 351 VAAADV AYVTADLRHHPA EH RA + AL+DVAHWASE+PWC QAA V+R+ Sbjct 300 AVAAADVDAYVTADLRHHPASEHVLAGTGPRAPRPALVDVAHWASEWPWCEQAAGVVRAA 359 Query 352 FGASLPVRVCTICTDPWNL 370 G S+ V V + TDPW + Sbjct 360 LGGSVDVHVSRLRTDPWTI 378 >gi|226360322|ref|YP_002778100.1| hypothetical protein ROP_09080 [Rhodococcus opacus B4] gi|226238807|dbj|BAH49155.1| hypothetical protein [Rhodococcus opacus B4] Length=379 Score = 412 bits (1060), Expect = 4e-113, Method: Compositional matrix adjust. Identities = 237/372 (64%), Positives = 273/372 (74%), Gaps = 5/372 (1%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--L 60 VRLADVI LD AYPP LA+SWDSVGLVCGDP D V +VTVAVD T AVVD+ AG L Sbjct 4 VRLADVIATLDAAYPPALAESWDSVGLVCGDPGDTVATVTVAVDPTAAVVDEAIAAGADL 63 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 LLVHHPLLLRGVDTV A+TPKG LVH+LI+ G +LFTAHTNADSA PGVSDALA A+GLT Sbjct 64 LLVHHPLLLRGVDTVGAHTPKGALVHKLIKAGCALFTAHTNADSADPGVSDALAAALGLT 123 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 V ++P P +LDKWV+ VP +++ VR A+F+AGAG IG+Y CSWSV G GQFL Sbjct 124 VTGPIEPHP-TENLDKWVVLVPTGDADTVRRALFDAGAGQIGNYRDCSWSVTGHGQFLPT 182 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 DGA P +G+VG +ERV E RVEV+AP R +VL AMRAAHPYEE AFD+F P Sbjct 183 DGAKPTLGAVGALERVEESRVEVIAPRGIRQKVLTAMRAAHPYEEVAFDVFETATFPGPH 242 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR+G LP+ LR F R+ ALP T GVRAAGDP+ ++ VAVCGG+GDS L VA Sbjct 243 GLGRVGELPEALTLREFTDRVADALPATTWGVRAAGDPEAVIRTVAVCGGSGDSFLDAVA 302 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS--LPV 358 V AYVTADLRHHPADEH RA ALIDVAHWASE PWC QA VL + F + V Sbjct 303 RLGVDAYVTADLRHHPADEHLRAGGPALIDVAHWASEQPWCEQAKGVLDTAFAHTPEWQV 362 Query 359 RVCTICTDPWNL 370 RV + TDPW++ Sbjct 363 RVSAVRTDPWSV 374 >gi|296394620|ref|YP_003659504.1| hypothetical protein Srot_2222 [Segniliparus rotundus DSM 44985] gi|296181767|gb|ADG98673.1| protein of unknown function DUF34 [Segniliparus rotundus DSM 44985] Length=387 Score = 410 bits (1055), Expect = 1e-112, Method: Compositional matrix adjust. Identities = 216/351 (62%), Positives = 252/351 (72%), Gaps = 3/351 (0%) Query 4 RLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LL 61 +L DV+ LD AYPPRLA WD+VGLVCGD D+ VD V VD T AVVD+ + G L+ Sbjct 9 KLHDVVAALDAAYPPRLALDWDAVGLVCGDLDEAVDKALVCVDVTEAVVDEALETGAQLI 68 Query 62 LVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTV 121 + HHPLLL+GV +V+A+TPKG L HRLIR G +LFTAHTNAD A PGVSDALA A+GL + Sbjct 69 VAHHPLLLKGVHSVSADTPKGRLAHRLIRGGCALFTAHTNADRADPGVSDALAEALGLRI 128 Query 122 DAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHD 181 ++PV +LDKW + VP ++E V +A+F AGAG IG Y CSW G GQF D Sbjct 129 VGPVEPV-MTEELDKWAVLVPAGDAERVCSALFAAGAGKIGQYDQCSWRTDGVGQFRPLD 187 Query 182 GASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSG 241 GA+PAIG VG VERV E RVEV+AP R R+ +LAA+R AHPYEEPAFD+F P P G Sbjct 188 GANPAIGRVGEVERVQEARVEVIAPKRLRSALLAALRHAHPYEEPAFDVFPQAPLPTALG 247 Query 242 LGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAA 301 LGRIG L +PEPLR F+AR +LP G+RA GDP LV+ VAVCGGAGDSLL VA Sbjct 248 LGRIGELERPEPLRDFLARAAQSLPAVPEGLRATGDPGQLVATVAVCGGAGDSLLGAVAQ 307 Query 302 ADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHF 352 ADV YVT DLRHHP DEH RA + AL+DV HWASE PWCGQAA VL F Sbjct 308 ADVDVYVTGDLRHHPVDEHVRAHRTALVDVGHWASERPWCGQAAGVLAWAF 358 >gi|317508020|ref|ZP_07965710.1| NIF3 protein [Segniliparus rugosus ATCC BAA-974] gi|316253682|gb|EFV13062.1| NIF3 protein [Segniliparus rugosus ATCC BAA-974] Length=381 Score = 399 bits (1026), Expect = 4e-109, Method: Compositional matrix adjust. Identities = 222/368 (61%), Positives = 256/368 (70%), Gaps = 3/368 (0%) Query 4 RLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LL 61 RL DV+ L+ AYPPRLA WD+VGLVCGDPDD VD V VD T AVVD+ AG L+ Sbjct 6 RLKDVVAALEAAYPPRLALDWDAVGLVCGDPDDEVDKALVCVDVTEAVVDEALAAGAKLI 65 Query 62 LVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTV 121 + HHPLLLRGV +V+A+TPKG LVHRLIR G +LFTAHTNAD A PGVSDALA A+GL V Sbjct 66 VAHHPLLLRGVSSVSADTPKGRLVHRLIRAGCALFTAHTNADRADPGVSDALAEALGLRV 125 Query 122 DAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHD 181 ++PV G +LDKWV+ VP ++ VR+A+F AGAG +GDY CSWS G GQF Sbjct 126 LGPVEPVTGP-ELDKWVVLVPLAEADRVRSALFAAGAGRLGDYDQCSWSADGIGQFRPLA 184 Query 182 GASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSG 241 GA+PAIG G +E+V E R+EV+AP RA VLAA+R AHPYEEPAFD+FA P G Sbjct 185 GANPAIGRTGELEQVEETRIEVIAPKSLRAAVLAALRTAHPYEEPAFDVFAQARLPTSLG 244 Query 242 LGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAA 301 LGRIG L +P PL F+AR AALP G+RA GDPD V VAVCGGAGDSLL VA Sbjct 245 LGRIGALARPVPLGDFLARAAAALPFAPEGLRATGDPDSPVETVAVCGGAGDSLLGAVAK 304 Query 302 ADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRVC 361 A V YVT DLRHHP DEH RA + AL+DV HWASE PWC QAA VL F + Sbjct 305 AGVDVYVTGDLRHHPVDEHVRAHRTALVDVGHWASERPWCDQAAGVLGKVFSGRVEAVPA 364 Query 362 TICTDPWN 369 T PW+ Sbjct 365 TTAPGPWS 372 >gi|54023602|ref|YP_117844.1| hypothetical protein nfa16340 [Nocardia farcinica IFM 10152] gi|54015110|dbj|BAD56480.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=374 Score = 394 bits (1012), Expect = 1e-107, Method: Compositional matrix adjust. Identities = 233/372 (63%), Positives = 274/372 (74%), Gaps = 4/372 (1%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVP--QA 58 M VRLAD++ VLD AYPP LA+SWD+VGLVCGDP+D + V AVDAT VV + +A Sbjct 1 MVVRLADLVAVLDAAYPPTLAESWDAVGLVCGDPEDALTRVLFAVDATAEVVAEAIDWRA 60 Query 59 GLLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVG 118 L+VHHPLLLRGVDTVAA+TPKG L+HRLIR+G +LFTAHTNADSA PGVSDALA A+G Sbjct 61 QALVVHHPLLLRGVDTVAADTPKGALLHRLIRSGCALFTAHTNADSADPGVSDALADALG 120 Query 119 LTVDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFL 178 L V L+ P AA +D W ++VPR ++EAV AA+F AGAG G Y C+ V GQF Sbjct 121 LAVTGPLETKPDAA-VDNWTVHVPRTHTEAVLAALFAAGAGGSGAYRDCAMRVEALGQFR 179 Query 179 AHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPV 238 GA+PAIG++G ++RV EDRVEV+AP ARA VLAA+RAAHPYEEPAF + P Sbjct 180 PVAGANPAIGTLGELQRVEEDRVEVIAPPSARAAVLAALRAAHPYEEPAFHVGERAALPS 239 Query 239 GSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLAT 298 G GLGR+G LP+PE LR F R+ AALPPT GVRAAGDPD ++ RVAVCGGAGDS L T Sbjct 240 GVGLGRVGTLPEPETLRAFTTRVAAALPPTTWGVRAAGDPDRMIERVAVCGGAGDSFLGT 299 Query 299 VAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPV 358 V V AYVTADLRHHPADEH RA AL+D AHWA+EFPWC QA ++R+ L Sbjct 300 VTRLGVDAYVTADLRHHPADEHLRAHGPALVDAAHWATEFPWCAQAEGIVRAAL-PDLQT 358 Query 359 RVCTICTDPWNL 370 RV T+ TDPW L Sbjct 359 RVSTLRTDPWTL 370 >gi|256375026|ref|YP_003098686.1| hypothetical protein Amir_0879 [Actinosynnema mirum DSM 43827] gi|255919329|gb|ACU34840.1| protein of unknown function DUF34 [Actinosynnema mirum DSM 43827] Length=380 Score = 388 bits (996), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 208/367 (57%), Positives = 258/367 (71%), Gaps = 3/367 (0%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 L +V+ L+ AYPP A+SWD+VGLVCGD + V V VD + VD+ + G LL+ Sbjct 4 LGEVLAALEAAYPPATAESWDAVGLVCGDRSEPVSKVLFCVDPVESTVDEAIEVGAQLLV 63 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 HHPLLLRGV V A+TPKG LVHRLIR G +L+TAHTNAD+A+PGVSDALA A+GL V Sbjct 64 SHHPLLLRGVHGVPADTPKGRLVHRLIRAGAALYTAHTNADTANPGVSDALARAIGLEVT 123 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 LDP P A LD YVP ++ V AA+ +AGAG GDY +WSV GTGQF +G Sbjct 124 GPLDPAPARA-LDVLTTYVPVADAAKVLAALHDAGAGSTGDYREVAWSVDGTGQFRPVEG 182 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSGL 242 A+PA+G VG +ER+ E R+E+V P RA+V+ A+RAAHPYEE AF++ + P +G+ Sbjct 183 ANPAVGVVGELERLPETRLELVLPRGRRADVVRALRAAHPYEEVAFNLNEIPELPADTGI 242 Query 243 GRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAA 302 GRIG LP+PEPL F R+ AALP TA GVR+AGDPD ++ VAVCGGAGDS L+ A Sbjct 243 GRIGVLPEPEPLSAFTRRVAAALPATAWGVRSAGDPDRVIGTVAVCGGAGDSHLSAATRA 302 Query 303 DVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRVCT 362 V AYVTADLRHHPA EH A AL+DVAHWASE+PWC QAA+++R+ FG ++ V T Sbjct 303 GVDAYVTADLRHHPAREHLDAGGPALVDVAHWASEWPWCAQAADIVRAAFGGTVETLVST 362 Query 363 ICTDPWN 369 TDPW Sbjct 363 RRTDPWT 369 >gi|38234251|ref|NP_940018.1| hypothetical protein DIP1680 [Corynebacterium diphtheriae NCTC 13129] gi|38200513|emb|CAE50209.1| Conserved hypothetical protein [Corynebacterium diphtheriae] Length=378 Score = 383 bits (984), Expect = 3e-104, Method: Compositional matrix adjust. Identities = 204/373 (55%), Positives = 252/373 (68%), Gaps = 8/373 (2%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--L 60 + ++DV V+D+AYPP LA+SWD+VGL+CGDP V V +A+D T V D+ G + Sbjct 2 ITVSDVRKVMDRAYPPHLAESWDAVGLICGDPAAPVSKVMLALDCTQEVADKAVDIGADM 61 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 L+VHHPLLLRGV +VAA+TPKG ++H LI G +LF AHTNADSA PGV+D LA VG+T Sbjct 62 LIVHHPLLLRGVSSVAADTPKGKVIHTLITGGVALFAAHTNADSARPGVNDKLAELVGIT 121 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 + P+ LDKW IYVP +++V+ AVFEAGAG IGDYS CS+ GTGQFL H Sbjct 122 PGRPVKPI--LKGLDKWGIYVPESAAQSVKDAVFEAGAGAIGDYSQCSFEWQGTGQFLPH 179 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPP---P 237 A P +G G +ER E RVE VAPAR R ++ A+RAAHPYEEPAFD+ ++ Sbjct 180 HNAQPVVGHPGQLERTEELRVEFVAPARLRTTLIDAIRAAHPYEEPAFDVVSMQSTQDLE 239 Query 238 VGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLA 297 GLGR+G LP+P FV ++ ALP T+ G+RAAGDP+ +V VAV G+GDS L Sbjct 240 TAEGLGRVGTLPEPMRFGDFVQQVADALPETSWGIRAAGDPEQMVHTVAVSSGSGDSFLD 299 Query 298 TVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLP 357 VAA V YVT+DLRHHPADE RA LID AHWASEFPW Q E+L F A L Sbjct 300 AVAALGVDVYVTSDLRHHPADESRRAQGPLLIDTAHWASEFPWTYQVQELLAQEF-AQLD 358 Query 358 VRVCTICTDPWNL 370 V V T+ TDPWN+ Sbjct 359 VEVATLRTDPWNI 371 >gi|343924131|ref|ZP_08763694.1| hypothetical protein GOALK_002_00850 [Gordonia alkanivorans NBRC 16433] gi|343765936|dbj|GAA10620.1| hypothetical protein GOALK_002_00850 [Gordonia alkanivorans NBRC 16433] Length=379 Score = 375 bits (962), Expect = 8e-102, Method: Compositional matrix adjust. Identities = 209/370 (57%), Positives = 248/370 (68%), Gaps = 6/370 (1%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQV--PQAGL 60 + + DV+D +++AYPP LA+SWD+VGLVCGD + V V VD T AVVD +A L Sbjct 10 ITVGDVVDAVERAYPPALAESWDAVGLVCGDRAEPVRRVLACVDVTDAVVDAAVAEKADL 69 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 ++ HHPLL+RGV +VAA+TPKG +VHRLIR G +L +AHTNADSA PGVSDALA +GL Sbjct 70 VIAHHPLLMRGVTSVAADTPKGRIVHRLIRNGIALLSAHTNADSARPGVSDALADLLGL- 128 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 VD V AA LDKWV+ VP N E V A+F AGAG IGDY CSW+V GTGQF A Sbjct 129 VDTVPIEPKSAAPLDKWVVMVPEGNVEQVSEAMFAAGAGAIGDYRDCSWTVVGTGQFEAQ 188 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 + A+P IG +GT V E RVE+VA R VL A+R AHPYEEPAFD+F L G Sbjct 189 EDATPTIGEIGTRTHVDEARVEMVADRSIRGSVLRALRNAHPYEEPAFDVFELADLGSGL 248 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR+G LP+P LR F A + AL +G+RAAGDPD V VAVCGGAGDSLL V Sbjct 249 GLGRVGSLPEPMTLRDFTAVVARAL-GAPSGIRAAGDPDAPVRTVAVCGGAGDSLLGRVR 307 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRV 360 V YVT DLRHHPADE R AL+D HWA+EFPWC Q AE++R +PV V Sbjct 308 GLGVDVYVTGDLRHHPADESLRDGGPALVDAGHWATEFPWCAQVAELVRKD--CDVPVVV 365 Query 361 CTICTDPWNL 370 TDP+ L Sbjct 366 YDTPTDPFGL 375 >gi|227503208|ref|ZP_03933257.1| protein of hypothetical function DUF34 [Corynebacterium accolens ATCC 49725] gi|227076269|gb|EEI14232.1| protein of hypothetical function DUF34 [Corynebacterium accolens ATCC 49725] Length=380 Score = 368 bits (945), Expect = 9e-100, Method: Compositional matrix adjust. Identities = 195/375 (52%), Positives = 253/375 (68%), Gaps = 10/375 (2%) Query 2 SVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG-- 59 +VR+ DV VLD+AYPPRLA+ WD+VGL+CGDP D V +V A+D T V D+ + G Sbjct 3 AVRVDDVRRVLDKAYPPRLAEKWDAVGLICGDPADEVRNVAFALDCTQEVADRAVELGAD 62 Query 60 LLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGL 119 +L+VHHPLLLRGVD+VAA+TPKG +VH LI+ G +LF AHTNAD A PGV+D LA VG+ Sbjct 63 MLVVHHPLLLRGVDSVAADTPKGKVVHTLIKNGVALFAAHTNADKARPGVNDKLAELVGI 122 Query 120 TVDAVLDPVPGAAD-LDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFL 178 T + VP A + +DKW +++P ++E V+ A+F+AGAGHIG YSHCS+ +AG GQF Sbjct 123 TPGRPI--VPEAPETIDKWGVHIPVGSAEQVKQALFDAGAGHIGAYSHCSFDIAGKGQFK 180 Query 179 AHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPP-- 236 +GA P G +G + R E RVE VAP+ R+ ++AA+ AHPYE PA+DI Sbjct 181 PEEGADPVEGDIGKLHRGDEVRVEFVAPSSLRSTLIAALHEAHPYEVPAYDIVETAGNGD 240 Query 237 -PVGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSL 295 GLGR+G LP+ LR F ++ ALP TA G+RAAGDP+ V VAV GAGDS Sbjct 241 LDTALGLGRVGELPREMTLREFTQQVANALPETAWGIRAAGDPEQTVRTVAVSSGAGDSF 300 Query 296 LATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS 355 LA A V YVT+DLRHHP DEH RA A+ID AHWASEFPW QA++++ + Sbjct 301 LAAAAKLGVDVYVTSDLRHHPVDEHLRAGGPAVIDTAHWASEFPWTAQASDIVEAAL--E 358 Query 356 LPVRVCTICTDPWNL 370 L + ++ TDPW + Sbjct 359 LDTEIISLRTDPWTI 373 >gi|312140239|ref|YP_004007575.1| hypothetical protein REQ_28770 [Rhodococcus equi 103S] gi|311889578|emb|CBH48895.1| conserved hypothetical protein [Rhodococcus equi 103S] Length=382 Score = 367 bits (943), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 233/370 (63%), Positives = 267/370 (73%), Gaps = 5/370 (1%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 LADVI L+ AYPP LA+SWDSVGLV GDP D V V VAVDAT AVVD+ +G LLL Sbjct 11 LADVIGALETAYPPALAESWDSVGLVAGDPADEVRKVVVAVDATAAVVDEALASGAQLLL 70 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGVDTV A+TPKG L+HRLIR G +L++AHTNAD A PGVSDALA A+GL Sbjct 71 VHHPLLLRGVDTVGAHTPKGALLHRLIRGGCALYSAHTNADRADPGVSDALAGALGLVAT 130 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 L P+P A DKWV+ VP ++ VR A+F AGAG +GDY CSW+V G GQF G Sbjct 131 RPLVPIPDTA-TDKWVVMVPTTDTVRVREALFAAGAGELGDYRECSWTVTGDGQFRPLPG 189 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSGL 242 A+P +G VG VE V EDRVEV+AP R+RA +LAA+RAAHPYEEPAFD+F P GL Sbjct 190 AAPTLGVVGEVEAVREDRVEVIAPRRSRARILAALRAAHPYEEPAFDVFETADFPGSRGL 249 Query 243 GRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAA 302 GRIG LP+P+ LR F AR+ AALP T GVRAAGDPD +V VAVCGG+GDSLL TV+ Sbjct 250 GRIGELPEPQTLREFTARVAAALPRTEWGVRAAGDPDRVVRTVAVCGGSGDSLLDTVSGL 309 Query 303 DVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGA--SLPVRV 360 YVTADLRHHPADEH R AL+DVAHWASE PWC QA VL FG+ VRV Sbjct 310 GADVYVTADLRHHPADEHLRRGGPALVDVAHWASEQPWCAQAKGVLDGRFGSVDGWDVRV 369 Query 361 CTICTDPWNL 370 + TDPW + Sbjct 370 TELRTDPWTV 379 >gi|325677014|ref|ZP_08156685.1| NIF3-like protein [Rhodococcus equi ATCC 33707] gi|325552176|gb|EGD21867.1| NIF3-like protein [Rhodococcus equi ATCC 33707] Length=382 Score = 365 bits (936), Expect = 9e-99, Method: Compositional matrix adjust. Identities = 231/370 (63%), Positives = 266/370 (72%), Gaps = 5/370 (1%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 LADVI L+ AY P LA+SWDSVGLV GDP D V V VAVDAT AVVD+ +G LLL Sbjct 11 LADVIGALETAYSPALAESWDSVGLVAGDPADEVRKVVVAVDATAAVVDEALASGAQLLL 70 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGVDTV A+TPKG L+HRLIR G +L++AHTNAD A PGVSDALA A+GL Sbjct 71 VHHPLLLRGVDTVGAHTPKGALLHRLIRGGCALYSAHTNADRADPGVSDALAGALGLVAT 130 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 L P+P A DKWV+ VP ++ +R A+F AGAG +GDY CSW+V G GQF G Sbjct 131 RPLVPIPDTA-TDKWVVMVPTTDTVRIREALFAAGAGELGDYRECSWTVTGDGQFRPLPG 189 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGSGL 242 A+P +G VG VE V EDRVEV+AP R+RA +LAA+RAAHPYEEPAFD+F P GL Sbjct 190 AAPTLGVVGEVETVREDRVEVIAPRRSRARILAALRAAHPYEEPAFDVFETADFPGSRGL 249 Query 243 GRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAA 302 GRIG LP+P+ LR F AR+ AALP T GVRAAGDPD +V VAVCGG+GDSLL TV+ Sbjct 250 GRIGELPEPQTLREFTARVAAALPRTEWGVRAAGDPDRVVRTVAVCGGSGDSLLDTVSGL 309 Query 303 DVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGA--SLPVRV 360 YVTADLRHHPADEH R AL+DVAHWASE PWC QA VL FG+ VRV Sbjct 310 GADVYVTADLRHHPADEHLRRGGPALVDVAHWASEQPWCAQAKGVLDGRFGSVDGWDVRV 369 Query 361 CTICTDPWNL 370 + TDPW + Sbjct 370 TELRTDPWTV 379 >gi|213965806|ref|ZP_03393998.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] gi|213951565|gb|EEB62955.1| conserved hypothetical protein [Corynebacterium amycolatum SK46] Length=395 Score = 363 bits (931), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 193/374 (52%), Positives = 248/374 (67%), Gaps = 9/374 (2%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--L 60 V +ADV +D AYPP LA+SWD VGL+CGDP D V + +A+D T V D+ +G + Sbjct 16 VTVADVRAAMDAAYPPALAESWDKVGLICGDPQDEVRRIALALDCTDEVADRAIASGAQM 75 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 L+VHHPLLLRGV++VAA+TPKG ++H+LIR G +LF AHTNADSA PGV+D LA +G+ Sbjct 76 LVVHHPLLLRGVNSVAADTPKGRIIHKLIRAGVALFAAHTNADSARPGVNDQLATVLGVE 135 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 A L P P A LD W + VP + + V A+FEAGAG IG+Y C++ + G GQF Sbjct 136 PGAPLAPQP-APGLDTWTVKVPADYVDKVAQAMFEAGAGTIGEYDSCAFRINGRGQFRPL 194 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIF----ALVPP 236 GA+P IG+ G VE V E R+E+VAP RA ++ A+ AAHPYEEPAFDI + P Sbjct 195 SGANPFIGAEGQVEYVEEVRLEMVAPRAVRAAIVKALVAAHPYEEPAFDIVDNQATGLDP 254 Query 237 PVGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLL 296 G+GR+G L P P + FVAR+ LP TA GVR AGDP+ ++ VAV G+GDS L Sbjct 255 QQAVGIGRVGTLDTPMPFKDFVARVAERLPATAWGVRGAGDPERMIRTVAVASGSGDSFL 314 Query 297 ATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASL 356 TVA V A+VT+DLRHHP DE R + ++D AHWASEFPWC QAA++L G + Sbjct 315 DTVAKMGVDAFVTSDLRHHPVDETLRTADFCVVDTAHWASEFPWCYQAADMLAERLGVA- 373 Query 357 PVRVCTICTDPWNL 370 V + TDPW + Sbjct 374 -TEVLEVRTDPWTV 386 >gi|262202987|ref|YP_003274195.1| hypothetical protein Gbro_3096 [Gordonia bronchialis DSM 43247] gi|262086334|gb|ACY22302.1| protein of unknown function DUF34 [Gordonia bronchialis DSM 43247] Length=379 Score = 362 bits (930), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 210/353 (60%), Positives = 243/353 (69%), Gaps = 4/353 (1%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQ--AGL 60 V +ADV+ VLD++YP LAQSWDSVGLVCGDPDD V V V VD T VVD + AGL Sbjct 9 VSVADVVTVLDESYPRALAQSWDSVGLVCGDPDDDVRRVLVCVDVTDDVVDVAVRQGAGL 68 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 +L HHPLLLRGVD+VAA+TPKG +VHRLIR +L TAHTNADSA PGVSDALA +G+ Sbjct 69 VLAHHPLLLRGVDSVAADTPKGRIVHRLIRNRIALLTAHTNADSARPGVSDALADLLGVL 128 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 ++P+P +DKWV+ V N+E V A+F AGAG IGDY C+WSV GTGQF Sbjct 129 DTTPIEPIP-VVPMDKWVVMVSEGNAEQVSEAMFAAGAGAIGDYRDCAWSVVGTGQFEPQ 187 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS 240 + A+PAIG +G V E RVE+VA RA VL A+R+AHPYEEPAFDI L Sbjct 188 ERATPAIGEIGMRTHVDEARVEMVAARGLRAAVLGALRSAHPYEEPAFDILELADVDSDV 247 Query 241 GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVA 300 GLGR+GRL +P L F A + A L + GVR AGDPD V+ VAVCGGAGDSLL V Sbjct 248 GLGRVGRLAEPVTLAEFTATVAARL-NSPWGVRVAGDPDTTVTAVAVCGGAGDSLLEVVR 306 Query 301 AADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFG 353 V YVTADLRHHPADE RA ALID HWA+EFPWC QAAE+L G Sbjct 307 RLGVDVYVTADLRHHPADEALRAGGPALIDAGHWATEFPWCTQAAEMLTDRLG 359 >gi|305680955|ref|ZP_07403762.1| dinuclear metal center protein, YbgI family [Corynebacterium matruchotii ATCC 14266] gi|305659160|gb|EFM48660.1| dinuclear metal center protein, YbgI family [Corynebacterium matruchotii ATCC 14266] Length=377 Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 195/371 (53%), Positives = 248/371 (67%), Gaps = 8/371 (2%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATP--AVVDQVPQAGLLL 62 +AD I VLD+AYPP LA+SWD VGL+CGDP D D++ +A+D T A A +L+ Sbjct 4 VADAIAVLDRAYPPHLAESWDKVGLICGDPADPADTILLALDCTQEVADAAVAAGADMLV 63 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGV +VAANTPKG ++H LIR G +LF AHTNADSA PGV+D LA+ VG+T Sbjct 64 VHHPLLLRGVTSVAANTPKGKIIHTLIRNGVALFAAHTNADSARPGVNDQLAYLVGVTPG 123 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 + P+ LDKW + VP + + A+++A+F AGAG+IG+YS C+++ G GQF Sbjct 124 RPIKPI--RRGLDKWGVQVPVDQAPALKSALFAAGAGNIGEYSECAFAWEGAGQFRPSTS 181 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVP-PPV--G 239 A PAIG+ + +V E R+E VAP+R R ++ A+R AHPYEEPAFD+ A P P+ Sbjct 182 AQPAIGNRNELTKVTELRIEFVAPSRLRETIMGALRTAHPYEEPAFDVVATEPTQPLEEA 241 Query 240 SGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATV 299 GLGRIG LP P FV ++ ALP T G+RAAGDPD +V +AV G+GDS L V Sbjct 242 YGLGRIGDLPHPMRFADFVQQVADALPVTEWGIRAAGDPDQMVQTIAVSSGSGDSFLDAV 301 Query 300 AAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVR 359 V YVT+DLRHHPADEH R S LID AHWASE+PW QAA++L + S V Sbjct 302 TGLGVDVYVTSDLRHHPADEHLRGSGPLLIDTAHWASEYPWTSQAADILATALPHS-NVS 360 Query 360 VCTICTDPWNL 370 V I TDPW + Sbjct 361 VLPIRTDPWTI 371 >gi|255324868|ref|ZP_05365977.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] gi|255298045|gb|EET77353.1| conserved hypothetical protein [Corynebacterium tuberculostearicum SK141] Length=379 Score = 358 bits (920), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 191/374 (52%), Positives = 244/374 (66%), Gaps = 9/374 (2%) Query 2 SVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG-- 59 +V + DV VLD+AYPP LA++WD+VGL+CGDP V V A+D T AV ++ + G Sbjct 3 AVSVGDVRRVLDEAYPPHLAETWDAVGLICGDPAAEVKRVAFALDCTQAVAERAVELGAD 62 Query 60 LLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGL 119 +L+VHHPLLLRGV++VAA+TPKG +VH L+ G +LF AHTNAD A PGV+D LA VG+ Sbjct 63 MLVVHHPLLLRGVESVAADTPKGKVVHTLVSNGVALFAAHTNADKARPGVNDKLAELVGI 122 Query 120 TVDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLA 179 + P P +DKW ++VP E V+ A+F+AGAGHIG YSHCS+ +AGTGQF Sbjct 123 NPGRPIVPEPQG--VDKWGVHVPVATVEEVKQALFDAGAGHIGAYSHCSFDIAGTGQFRP 180 Query 180 HDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPP-- 237 +GA P G +G + R E RVE VAPA R+ +L A+ AAHPYE PA+DI Sbjct 181 EEGADPTEGEIGALHRGEEIRVEFVAPAALRSSLLKALHAAHPYEVPAYDITETAGHQDL 240 Query 238 -VGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLL 296 GLGR+G LP+ LR F ++ ALP TA G+RAAGDPD V VAV G+GDS L Sbjct 241 DKALGLGRVGELPQEMTLREFTQQVANALPETAWGIRAAGDPDQKVRTVAVSSGSGDSFL 300 Query 297 ATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASL 356 + A V YVT+DLRHHP DEH RA A+ID AHWASEFPW QA +++ L Sbjct 301 SAAAKLGVDVYVTSDLRHHPVDEHLRAGGPAVIDTAHWASEFPWTAQARDIVEDAL--EL 358 Query 357 PVRVCTICTDPWNL 370 + ++ TDPW + Sbjct 359 DTEIISLRTDPWTI 372 >gi|225021831|ref|ZP_03711023.1| hypothetical protein CORMATOL_01862 [Corynebacterium matruchotii ATCC 33806] gi|224945379|gb|EEG26588.1| hypothetical protein CORMATOL_01862 [Corynebacterium matruchotii ATCC 33806] Length=377 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 193/371 (53%), Positives = 246/371 (67%), Gaps = 8/371 (2%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATP--AVVDQVPQAGLLL 62 +AD I +LD+AYPP LA+SWD VGL+CGDP D D++ +A+D T A A +L+ Sbjct 4 VADAIAILDRAYPPHLAESWDKVGLICGDPADPADTILLALDCTQEVADAAVAAGADMLV 63 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGV +VAANTPKG ++H LIR G +LF AHTNADSA PGV+D LAH VG+ Sbjct 64 VHHPLLLRGVTSVAANTPKGKIIHTLIRNGVALFAAHTNADSARPGVNDQLAHLVGIIPG 123 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 + P+ LDKW + VP + + A+++A+F AGAG+IG+YS C+++ G GQF Sbjct 124 RPIKPIRWG--LDKWGVQVPVDQAPALKSAMFAAGAGNIGEYSECAFAWEGAGQFRPSTS 181 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVP-PPV--G 239 A PAIG+ + +V E R+E VAP+R R ++ A+R AHPYEEPAFD+ A P P+ Sbjct 182 AQPAIGNRDELTKVTELRIEFVAPSRLRETIMGALRTAHPYEEPAFDVVATEPTQPLEEA 241 Query 240 SGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATV 299 GLGRIG LP P FV ++ ALP T G+RAAGDPD +V +AV G+GDS L V Sbjct 242 YGLGRIGDLPHPMRFADFVQQVANALPVTEWGIRAAGDPDQMVQTIAVSSGSGDSFLDAV 301 Query 300 AAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVR 359 V YVT+DLRHHPADEH R LID AHWASE+PW QAA++L + S V Sbjct 302 TGLGVDVYVTSDLRHHPADEHLRGGGPLLIDTAHWASEYPWTSQAADILATALPHS-NVS 360 Query 360 VCTICTDPWNL 370 V I TDPW + Sbjct 361 VLPIRTDPWTI 371 >gi|311741454|ref|ZP_07715278.1| NIF3-like protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311303624|gb|EFQ79703.1| NIF3-like protein [Corynebacterium pseudogenitalium ATCC 33035] Length=379 Score = 357 bits (915), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 190/374 (51%), Positives = 243/374 (65%), Gaps = 9/374 (2%) Query 2 SVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG-- 59 +V + DV VLD+AYPP LA+ WD+VGL+CGDP V V A+D T AV ++ + G Sbjct 3 AVSVGDVRRVLDEAYPPHLAEKWDAVGLICGDPAAEVKRVAFALDCTQAVAERAVELGAD 62 Query 60 LLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGL 119 +L+VHHPLLLRGV++VAA+TPKG +VH L+ G +LF AHTNAD A PGV+D LA VG+ Sbjct 63 MLVVHHPLLLRGVESVAADTPKGKVVHTLVSNGVALFAAHTNADKARPGVNDKLAELVGI 122 Query 120 TVDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLA 179 + P P +DKW ++VP +E V+ A+F+AGAGHIG YSHCS+ AGTGQF Sbjct 123 NPGRPIVPEPQG--VDKWGVHVPVAAAEEVKQALFDAGAGHIGAYSHCSFDFAGTGQFQP 180 Query 180 HDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPP-- 237 +GA P G +G + R E RVE VAPA R+ +L A+ AHPYE PA+DI Sbjct 181 EEGADPTEGEIGALHRGEEIRVEFVAPAALRSSLLKALHTAHPYEVPAYDITETAGHQDL 240 Query 238 -VGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLL 296 GLGR+G LP+ LR F ++ ALP TA G+RAAGDPD V VAV G+GDS L Sbjct 241 DKALGLGRVGELPQEMTLREFTQQVANALPETAWGIRAAGDPDQKVRTVAVSSGSGDSFL 300 Query 297 ATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASL 356 + A V YVT+DLRHHP DEH RA A+ID AHWASEFPW QA +++ + L Sbjct 301 SAAAKLGVDVYVTSDLRHHPVDEHLRAGGPAVIDTAHWASEFPWTAQARDIVENAL--EL 358 Query 357 PVRVCTICTDPWNL 370 + ++ TDPW + Sbjct 359 DTEIISLRTDPWTI 372 >gi|227548843|ref|ZP_03978892.1| protein of hypothetical function DUF34 [Corynebacterium lipophiloflavum DSM 44291] gi|227079064|gb|EEI17027.1| protein of hypothetical function DUF34 [Corynebacterium lipophiloflavum DSM 44291] Length=378 Score = 355 bits (912), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 192/371 (52%), Positives = 245/371 (67%), Gaps = 9/371 (2%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 +ADV+ L+ AYPP LA+ WD VGL+CGDPDD V +V A+D T V + + G +L+ Sbjct 6 VADVVAALEAAYPPALAEDWDKVGLICGDPDDEVSNVAFALDCTLEVAQRAVEIGAQMLV 65 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGV +VAA+TPKG ++H L+R G +LF AHTNADSA PGVSD LA VG+T Sbjct 66 VHHPLLLRGVSSVAADTPKGKVIHTLLRGGVALFAAHTNADSARPGVSDLLAELVGITPG 125 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 + P+ D+W + VPRE++++V A+F AGAG IGDY CS+ GTG F G Sbjct 126 RPIRPIRRGG-TDRWGVNVPRESADSVMEAMFAAGAGAIGDYERCSFRFEGTGGFTPRAG 184 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFAL---VPPPVG 239 A+P G++G E RVE VAP+R R ++ A+R AHPYEEPAFDI A+ P Sbjct 185 ANPTEGTIGQPFSGPEVRVEFVAPSRLRTSLIDALRDAHPYEEPAFDIVAIADDTPLDSA 244 Query 240 SGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATV 299 GLGR+G LP+P LR F ++ ALP TA GVRAAGDP+ +V VAV G+GD L+ V Sbjct 245 PGLGRVGTLPEPMTLRDFTQQVADALPETAWGVRAAGDPEQMVRTVAVSSGSGDGFLSDV 304 Query 300 AAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVR 359 AA V YVT+DLRHHP DEH RA A+ID AHWASEFPW QA ++ + + Sbjct 305 AALGVDVYVTSDLRHHPVDEHLRAGGPAVIDTAHWASEFPWTTQAKGIVDA---LDVNTE 361 Query 360 VCTICTDPWNL 370 + +I TDPW + Sbjct 362 IVSIRTDPWTV 372 >gi|337291200|ref|YP_004630221.1| hypothetical protein CULC22_01592 [Corynebacterium ulcerans BR-AD22] gi|334699506|gb|AEG84302.1| hypothetical protein CULC22_01592 [Corynebacterium ulcerans BR-AD22] Length=388 Score = 352 bits (904), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 190/371 (52%), Positives = 242/371 (66%), Gaps = 8/371 (2%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVP--QAGLLL 62 +ADV V+++AYPP LA+ WD+VGL+CGDP V + VA+D T V + +A +L+ Sbjct 9 VADVRSVMEEAYPPYLAEKWDAVGLICGDPQQAVHKIVVALDCTQEVAEAAVNVEADMLI 68 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLLLRGV +VAA+TPKG ++H LIR G +LF AHTNADSA PGV+D LA VG+ Sbjct 69 VHHPLLLRGVTSVAADTPKGKVIHTLIRGGVALFAAHTNADSARPGVNDKLAELVGIVPG 128 Query 123 AVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDG 182 + P P +DKW + VP E E+V+ ++F+AGAG IG YS CS+ V GTGQFL Sbjct 129 RPVQPKPQG--IDKWGVQVPAEAVESVKRSLFDAGAGQIGKYSECSFDVTGTGQFLPDKD 186 Query 183 ASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPVGS-- 240 A+P G G + E RVE VAP R ++ A+RA HPYEEPAFD+ ++ S Sbjct 187 ATPHTGVPGDLHSGPEIRVEFVAPRAVRNAIMTALRATHPYEEPAFDVVSMEDTQDLSQA 246 Query 241 -GLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATV 299 GLGR+G LP+P P FV ++ ALP T+ GVRAAGDP+ LV +AV G+GDS L V Sbjct 247 YGLGRVGTLPEPMPFADFVQQVANALPETSWGVRAAGDPEALVQTIAVSSGSGDSFLDAV 306 Query 300 AAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVR 359 A V YVT+DLRHHPADE RA L+D AHWASE+PW QA+E+L + V Sbjct 307 ARLGVDVYVTSDLRHHPADESRRADGPFLVDTAHWASEYPWTEQASEILARAL-PDVTVD 365 Query 360 VCTICTDPWNL 370 + I TDPW L Sbjct 366 IVPIRTDPWTL 376 >gi|344044317|gb|EGV39995.1| hypothetical protein CgS9114_10222 [Corynebacterium glutamicum S9114] Length=380 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 185/373 (50%), Positives = 244/373 (66%), Gaps = 7/373 (1%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL-- 60 V + D+ +LD+AYPP LA+SWD VGL+CGDP + V V +A+D T AV D+ GL Sbjct 4 VTVGDIRRILDEAYPPALAESWDKVGLICGDPTESVKRVGLALDCTQAVADKAVDMGLDM 63 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 L++HHPLLLRGV +VAA+ PKG ++H LIR G +LF+AHTNADSA PGV+D LA VG+T Sbjct 64 LIIHHPLLLRGVTSVAADEPKGKVIHTLIRGGVALFSAHTNADSARPGVNDKLAELVGIT 123 Query 121 VDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAH 180 + P +DKW ++V +++ ++ +F+AGAG IGDY C++ + GTGQF Sbjct 124 AGRPIAPRL-LGGMDKWGVHVLPKDAAYLKKMLFDAGAGAIGDYRECAFEIEGTGQFRPV 182 Query 181 DGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPV-- 238 +GA+PA G V + + E R+E VAP RA + + +R AHPYEEPAFDI + Sbjct 183 EGANPAEGDVDKLFKSLELRIEFVAPRNLRARLTSVLREAHPYEEPAFDIVEMHSAESLE 242 Query 239 -GSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLA 297 +GLGR+G LP+P L FV ++ LP T GVRA GDP+ +VSRVAV G+GDS L Sbjct 243 NATGLGRVGELPEPMRLADFVQQVANNLPVTEWGVRATGDPEQMVSRVAVSSGSGDSFLN 302 Query 298 TVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLP 357 V V YVT+DLRHHP DE+ R A+ID AHWASEFPW QA E+L+ + Sbjct 303 DVIKLGVDVYVTSDLRHHPVDEYLRDGGPAVIDTAHWASEFPWTSQAQEILQDK-APQVE 361 Query 358 VRVCTICTDPWNL 370 V V +I TDPW + Sbjct 362 VDVISIRTDPWTM 374 >gi|300780760|ref|ZP_07090614.1| NIF3-like protein [Corynebacterium genitalium ATCC 33030] gi|300532467|gb|EFK53528.1| NIF3-like protein [Corynebacterium genitalium ATCC 33030] Length=378 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 192/372 (52%), Positives = 245/372 (66%), Gaps = 9/372 (2%) Query 5 LADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG--LLL 62 + DV+ L+ AYPPRLA+SWD+VGL+CGDP + V A+D T AV ++ + G LL+ Sbjct 4 VGDVVHALETAYPPRLAESWDAVGLICGDPAEPARKVVFALDCTQAVAERAVELGADLLV 63 Query 63 VHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVD 122 VHHPLL+ GV +VAANTPKG +VH LIR G +LF AHTNADSA PGVSD LA VG+T Sbjct 64 VHHPLLMHGVTSVAANTPKGKVVHTLIRGGCALFAAHTNADSARPGVSDKLAELVGITPG 123 Query 123 AVLDPV-PGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHD 181 + V P A DL W +++P + + V A+F+AGAGHIG+YSHC++ G G F + Sbjct 124 RPIKVVDPAAQDL--WGVHIPPGDVDRVMQALFDAGAGHIGNYSHCAFEWDGRGGFTPEE 181 Query 182 GASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFAL---VPPPV 238 GA P G VG E RV+ VAP+ R ++ A +R AHPYEEPAFD+ L V Sbjct 182 GADPTDGHVGEHFTGEETRVQFVAPSSLRGKLTAVLRGAHPYEEPAFDVVTLESTVDLET 241 Query 239 GSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLAT 298 +GLGR+G+L +P LR F ++ ALP TA GVRAAGDPD +V VAV G+GDS L Sbjct 242 VTGLGRVGKLAEPMTLRAFTQQVADALPETAWGVRAAGDPDQMVQTVAVSSGSGDSFLDA 301 Query 299 VAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPV 358 V+ V YVT+DLRHHP DEH RA A+ID AHWASEFPW QA+EV+ + + Sbjct 302 VSTLGVDVYVTSDLRHHPVDEHLRAGGPAVIDTAHWASEFPWTSQASEVV-AEACPEVET 360 Query 359 RVCTICTDPWNL 370 + T+ TDPW + Sbjct 361 EIITLHTDPWTI 372 >gi|19553438|ref|NP_601440.1| hypothetical protein NCgl2157 [Corynebacterium glutamicum ATCC 13032] gi|21325009|dbj|BAB99631.1| Uncharacterized ACR [Corynebacterium glutamicum ATCC 13032] Length=380 Score = 349 bits (895), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 185/375 (50%), Positives = 244/375 (66%), Gaps = 11/375 (2%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL-- 60 V + D+ +LD+AYPP LA+SWD VGL+CGDP + V V +A+D T AV D+ GL Sbjct 4 VTVGDIRRILDEAYPPALAESWDKVGLICGDPTESVKRVGLALDCTQAVADKAVDMGLDM 63 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 L++HHPLLLRGV +VAA+ PKG ++H LIR G +LF+AHTNADSA PGV+D LA VG+T Sbjct 64 LIIHHPLLLRGVTSVAADEPKGKVIHTLIRGGVALFSAHTNADSARPGVNDKLAELVGIT 123 Query 121 VDAVLDPVPGA--ADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFL 178 P+ +DKW ++V +++ ++ +F+AGAG IGDY C++ + GTGQF Sbjct 124 AGR---PIATRLLGGMDKWGVHVLPKDAAYLKKMLFDAGAGAIGDYRECAFEIEGTGQFR 180 Query 179 AHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPV 238 +GA+PA G V + + E R+E VAP RA + + +R AHPYEEPAFDI + Sbjct 181 PVEGANPAEGDVDKLFKSLELRIEFVAPRNLRARLTSVLREAHPYEEPAFDIVEMHSAES 240 Query 239 ---GSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSL 295 +GLGR+G LP+P L FV ++ LP T GVRA GDP+ +VSRVAV G+GDS Sbjct 241 LENATGLGRVGELPEPMRLADFVQQVANNLPVTEWGVRATGDPEQMVSRVAVSSGSGDSF 300 Query 296 LATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS 355 L V V YVT+DLRHHP DE+ R A+ID AHWASEFPW QA E+L+ Sbjct 301 LNDVIKLGVDVYVTSDLRHHPVDEYLREGGPAVIDTAHWASEFPWTSQAQEILQDK-APQ 359 Query 356 LPVRVCTICTDPWNL 370 + V V +I TDPW + Sbjct 360 VEVDVISIRTDPWTM 374 >gi|62391079|ref|YP_226481.1| hypothetical protein cg2457 [Corynebacterium glutamicum ATCC 13032] gi|41326418|emb|CAF20580.1| conserved hypothetical protein [Corynebacterium glutamicum ATCC 13032] Length=380 Score = 348 bits (894), Expect = 7e-94, Method: Compositional matrix adjust. Identities = 185/375 (50%), Positives = 241/375 (65%), Gaps = 11/375 (2%) Query 3 VRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL-- 60 V + D+ +LD+AYPP LA+SWD VGL+CGDP + V V +A+D T AV D+ GL Sbjct 4 VTVGDIRRILDEAYPPALAESWDKVGLICGDPTESVKRVGLALDCTQAVADKAVDMGLDM 63 Query 61 LLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLT 120 L++HHPLLLRGV +VAA+ PKG ++H LIR G +LF+AHTNADSA PGV+D LA VG+T Sbjct 64 LIIHHPLLLRGVTSVAADEPKGKVIHTLIRGGVALFSAHTNADSARPGVNDKLAELVGIT 123 Query 121 VDAVLDPVPGA--ADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFL 178 P+ +DKW ++V ++ +F+AGAG IGDY C++ + GTGQF Sbjct 124 AGR---PIATRLLGGMDKWGVHVLPRMQRTLKKMLFDAGAGAIGDYRECAFEIEGTGQFR 180 Query 179 AHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPV 238 +GA+PA G V + + E R+E VAP RA + + +R AHPYEEPAFDI + Sbjct 181 PVEGANPAEGDVDKLFKSLELRIEFVAPRNLRARLTSVLREAHPYEEPAFDIVEMHSAES 240 Query 239 ---GSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSL 295 +GLGR+G LP+P L FV ++ LP T GVRA GDP+ +VSRVAV G+GDS Sbjct 241 LENATGLGRVGELPEPMRLADFVQQVANNLPVTEWGVRATGDPEQMVSRVAVSSGSGDSF 300 Query 296 LATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS 355 L V V YVT+DLRHHP DE+ R A+ID AHWASEFPW QA E+L+ Sbjct 301 LNDVIKLGVDVYVTSDLRHHPVDEYLREGGPAVIDTAHWASEFPWTSQAQEILQDK-APQ 359 Query 356 LPVRVCTICTDPWNL 370 + V V +I TDPW + Sbjct 360 VEVDVISIRTDPWTM 374 >gi|145296196|ref|YP_001139017.1| hypothetical protein cgR_2114 [Corynebacterium glutamicum R] gi|140846116|dbj|BAF55115.1| hypothetical protein [Corynebacterium glutamicum R] Length=380 Score = 348 bits (893), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 183/365 (51%), Positives = 240/365 (66%), Gaps = 7/365 (1%) Query 11 VLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAGL--LLVHHPLL 68 +LD+AYPP LA+SWD VGL+CGDP + V V +A+D T AV D+ GL L++HHPLL Sbjct 12 ILDEAYPPALAESWDKVGLICGDPTESVKRVGLALDCTQAVADKAVDMGLDMLIIHHPLL 71 Query 69 LRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVGLTVDAVLDPV 128 LRGV +VAA+ PKG ++H LIR G +LF+AHTNADSA PGV+D LA VG+T + P Sbjct 72 LRGVTSVAADEPKGKVIHTLIRGGVALFSAHTNADSARPGVNDKLAELVGITAGRPIAPR 131 Query 129 PGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFLAHDGASPAIG 188 +DKW ++V +++ ++ +F+AGAG IGDY C++ + GTGQF +GA+PA G Sbjct 132 L-LGGMDKWGVHVLPKDAAYLKKMLFDAGAGAIGDYRECAFEIEGTGQFRPVEGANPAEG 190 Query 189 SVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPPPV---GSGLGRI 245 V + + E R+E VAP RA + + +R AHPYEEPAFDI + +GLGR+ Sbjct 191 DVDKLFKSLELRIEFVAPRNLRARLTSVLREAHPYEEPAFDIVEMHSAESLENATGLGRV 250 Query 246 GRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSLLATVAAADVQ 305 G LP+P L FV ++ LP T GVRA GDP+ +VSRVAV G+GDS L V V Sbjct 251 GELPEPMRLADFVQQVANNLPVTEWGVRATGDPEQMVSRVAVSSGSGDSFLNDVIKLGVD 310 Query 306 AYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGASLPVRVCTICT 365 YVT+DLRHHP DE+ R A+ID AHWASEFPW QA E+L+ + V V +I T Sbjct 311 VYVTSDLRHHPVDEYLREGGPAVIDTAHWASEFPWTSQAQEILQDK-APQVEVDVISIRT 369 Query 366 DPWNL 370 DPW + Sbjct 370 DPWTM 374 >gi|300858915|ref|YP_003783898.1| hypothetical protein cpfrc_01498 [Corynebacterium pseudotuberculosis FRC41] gi|300686369|gb|ADK29291.1| hypothetical protein cpfrc_01498 [Corynebacterium pseudotuberculosis FRC41] gi|302206614|gb|ADL10956.1| NIF3 (NGG1p interacting factor 3) [Corynebacterium pseudotuberculosis C231] gi|302331165|gb|ADL21359.1| NIF3 (NGG1p interacting factor 3) [Corynebacterium pseudotuberculosis 1002] gi|308276858|gb|ADO26757.1| NIF3 (NGG1p interacting factor 3) [Corynebacterium pseudotuberculosis I19] gi|341825301|gb|AEK92822.1| NIF3 (NGG1p interacting factor 3) [Corynebacterium pseudotuberculosis PAT10] Length=385 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 189/375 (51%), Positives = 244/375 (66%), Gaps = 8/375 (2%) Query 1 MSVRLADVIDVLDQAYPPRLAQSWDSVGLVCGDPDDVVDSVTVAVDATPAVVDQVPQAG- 59 + +A V V+D+AYPP LA+ WD+VGL+CGDP V + +A+D T V + QA Sbjct 5 IQTTVAGVRSVMDKAYPPYLAEKWDAVGLICGDPQQKVHKIVLALDCTQEVAEAAVQAEA 64 Query 60 -LLLVHHPLLLRGVDTVAANTPKGVLVHRLIRTGRSLFTAHTNADSASPGVSDALAHAVG 118 +L+VHHPLLLRGV +VAA+TPKG ++H LIR G +LF AHTNADSA PGV+D LA VG Sbjct 65 DMLIVHHPLLLRGVTSVAADTPKGKVLHTLIRGGVALFAAHTNADSARPGVNDKLAELVG 124 Query 119 LTVDAVLDPVPGAADLDKWVIYVPRENSEAVRAAVFEAGAGHIGDYSHCSWSVAGTGQFL 178 + + P P +DKW + VP E EAV++++F AGAG+IG YS CS+ + GTGQFL Sbjct 125 IVPGRPVQPKPQG--MDKWGVQVPAEAVEAVKSSIFHAGAGNIGKYSECSFDITGTGQFL 182 Query 179 AHDGASPAIGSVGTVERVAEDRVEVVAPARARAEVLAAMRAAHPYEEPAFDIFALVPP-- 236 A+P G G + + E RVE VAP R+ ++ A+R +HPYEEPAFD+ ++ Sbjct 183 PQHDATPYSGVPGDLHKGPETRVEFVAPRAVRSAIMTALRDSHPYEEPAFDVISMEDTQD 242 Query 237 -PVGSGLGRIGRLPKPEPLRTFVARLEAALPPTATGVRAAGDPDLLVSRVAVCGGAGDSL 295 GLGRIG LP+P FV ++ ALP T+ GVRAAGDP+ LV +AV GAGDS Sbjct 243 LSQAQGLGRIGTLPEPISFADFVQQVADALPETSWGVRAAGDPEALVQTIAVSSGAGDSF 302 Query 296 LATVAAADVQAYVTADLRHHPADEHCRASQVALIDVAHWASEFPWCGQAAEVLRSHFGAS 355 L VA V YVT+DLRHHPADE RA L+D AHWASE+PW QA+E+L+ Sbjct 303 LDDVARLGVDVYVTSDLRHHPADESRRAGGPFLVDTAHWASEYPWTTQASEILKREL-PG 361 Query 356 LPVRVCTICTDPWNL 370 + V + I TDPW L Sbjct 362 VEVDILPIRTDPWTL 376 Lambda K H 0.319 0.134 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 731253940900 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40