BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2231B

Length=58
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|167969367|ref|ZP_02551644.1|  hypothetical protein MtubH3_1560...   115    2e-24
gi|294993621|ref|ZP_06799312.1|  antitoxin [Mycobacterium tubercu...   102    2e-20
gi|336178544|ref|YP_004583919.1|  prevent-host-death family prote...  39.7    0.16 


>gi|167969367|ref|ZP_02551644.1| hypothetical protein MtubH3_15605 [Mycobacterium tuberculosis 
H37Ra]
 gi|253798701|ref|YP_003031702.1| antitoxin [Mycobacterium tuberculosis KZN 1435]
 gi|254551275|ref|ZP_05141722.1| antitoxin [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 23 more sequence titles
 Length=58

 Score =  115 bits (289),  Expect = 2e-24, Method: Compositional matrix adjust.
 Identities = 57/58 (99%), Positives = 58/58 (100%), Gaps = 0/58 (0%)

Query  1   LALWYQAMIAKFGEQVVDAKVWAPAKRVGVHEAKTRLSELLRLVYGGQRLRLPAAASR  58
           +ALWYQAMIAKFGEQVVDAKVWAPAKRVGVHEAKTRLSELLRLVYGGQRLRLPAAASR
Sbjct  1   MALWYQAMIAKFGEQVVDAKVWAPAKRVGVHEAKTRLSELLRLVYGGQRLRLPAAASR  58


>gi|294993621|ref|ZP_06799312.1| antitoxin [Mycobacterium tuberculosis 210]
 gi|313659151|ref|ZP_07816031.1| antitoxin [Mycobacterium tuberculosis KZN V2475]
Length=51

 Score =  102 bits (255),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 51/51 (100%), Positives = 51/51 (100%), Gaps = 0/51 (0%)

Query  8   MIAKFGEQVVDAKVWAPAKRVGVHEAKTRLSELLRLVYGGQRLRLPAAASR  58
           MIAKFGEQVVDAKVWAPAKRVGVHEAKTRLSELLRLVYGGQRLRLPAAASR
Sbjct  1   MIAKFGEQVVDAKVWAPAKRVGVHEAKTRLSELLRLVYGGQRLRLPAAASR  51


>gi|336178544|ref|YP_004583919.1| prevent-host-death family protein [Frankia symbiont of Datisca 
glomerata]
 gi|334859524|gb|AEH09998.1| prevent-host-death family protein [Frankia symbiont of Datisca 
glomerata]
Length=80

 Score = 39.7 bits (91),  Expect = 0.16, Method: Compositional matrix adjust.
 Identities = 19/28 (68%), Positives = 22/28 (79%), Gaps = 0/28 (0%)

Query  25  AKRVGVHEAKTRLSELLRLVYGGQRLRL  52
           A +VGVHEAKTRLSELLR V  GQ + +
Sbjct  5   AIQVGVHEAKTRLSELLRAVAAGQEVDI  32



Lambda     K      H
   0.323    0.134    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 128188454310


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40