BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2235
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
gi|15609372|ref|NP_216751.1| transmembrane protein [Mycobacteriu... 539 2e-151
gi|289754343|ref|ZP_06513721.1| transmembrane protein [Mycobacte... 538 3e-151
gi|118617015|ref|YP_905347.1| transmembrane protein [Mycobacteri... 438 4e-121
gi|183983300|ref|YP_001851591.1| transmembrane protein [Mycobact... 438 5e-121
gi|240172448|ref|ZP_04751107.1| transmembrane protein [Mycobacte... 436 2e-120
gi|296166125|ref|ZP_06848570.1| transmembrane protein [Mycobacte... 425 3e-117
gi|289443745|ref|ZP_06433489.1| transmembrane protein [Mycobacte... 424 9e-117
gi|254821904|ref|ZP_05226905.1| hypothetical protein MintA_18362... 410 1e-112
gi|15827867|ref|NP_302130.1| hypothetical protein ML1644 [Mycoba... 406 2e-111
gi|342857256|ref|ZP_08713912.1| hypothetical protein MCOL_00220 ... 399 3e-109
gi|108800314|ref|YP_640511.1| hypothetical protein Mmcs_3348 [My... 390 1e-106
gi|120404591|ref|YP_954420.1| putative transmembrane protein [My... 388 5e-106
gi|118464619|ref|YP_881413.1| hypothetical protein MAV_2204 [Myc... 383 2e-104
gi|41408084|ref|NP_960920.1| hypothetical protein MAP1986 [Mycob... 376 1e-102
gi|118470407|ref|YP_888587.1| hypothetical protein MSMEG_4311 [M... 374 1e-101
gi|333990301|ref|YP_004522915.1| transmembrane protein [Mycobact... 358 4e-97
gi|145223474|ref|YP_001134152.1| hypothetical protein Mflv_2887 ... 353 1e-95
gi|315443835|ref|YP_004076714.1| hypothetical protein Mspyr1_223... 352 3e-95
gi|169628987|ref|YP_001702636.1| hypothetical protein MAB_1899c ... 322 5e-86
gi|226360326|ref|YP_002778104.1| hypothetical protein ROP_09120 ... 270 1e-70
gi|333918909|ref|YP_004492490.1| transmembrane protein [Amycolic... 267 1e-69
gi|325677010|ref|ZP_08156681.1| transmembrane protein [Rhodococc... 266 2e-69
gi|111018200|ref|YP_701172.1| hypothetical protein RHA1_ro01187 ... 264 9e-69
gi|312140243|ref|YP_004007579.1| integral membrane protein [Rhod... 261 6e-68
gi|54023598|ref|YP_117840.1| hypothetical protein nfa16300 [Noca... 257 1e-66
gi|229490254|ref|ZP_04384096.1| conserved hypothetical protein [... 253 3e-65
gi|226307151|ref|YP_002767111.1| hypothetical protein RER_36640 ... 252 3e-65
gi|296140408|ref|YP_003647651.1| transmembrane protein [Tsukamur... 239 3e-61
gi|326382468|ref|ZP_08204159.1| hypothetical protein SCNU_06000 ... 235 5e-60
gi|262202992|ref|YP_003274200.1| hypothetical protein Gbro_3101 ... 224 1e-56
gi|259507756|ref|ZP_05750656.1| membrane protein [Corynebacteriu... 214 1e-53
gi|25028695|ref|NP_738749.1| hypothetical protein CE2139 [Coryne... 214 1e-53
gi|134098163|ref|YP_001103824.1| hypothetical protein SACE_1577 ... 214 1e-53
gi|255324870|ref|ZP_05365979.1| conserved hypothetical protein [... 211 9e-53
gi|227503206|ref|ZP_03933255.1| transmembrane protein [Corynebac... 211 1e-52
gi|227504612|ref|ZP_03934661.1| transmembrane protein [Corynebac... 210 2e-52
gi|256375020|ref|YP_003098680.1| SURF1 family protein [Actinosyn... 209 2e-52
gi|311741452|ref|ZP_07715276.1| transmembrane protein [Corynebac... 209 3e-52
gi|306834676|ref|ZP_07467758.1| transmembrane protein [Corynebac... 209 3e-52
gi|340794051|ref|YP_004759514.1| hypothetical protein CVAR_1087 ... 206 2e-51
gi|227548840|ref|ZP_03978889.1| transmembrane protein [Corynebac... 205 7e-51
gi|317508018|ref|ZP_07965708.1| hypothetical protein HMPREF9336_... 204 1e-50
gi|62391082|ref|YP_226484.1| hypothetical protein cg2460 [Coryne... 202 6e-50
gi|23308914|ref|NP_601443.2| hypothetical protein NCgl2160 [Cory... 201 7e-50
gi|227543048|ref|ZP_03973097.1| conserved transmembrane protein ... 201 1e-49
gi|227488436|ref|ZP_03918752.1| conserved transmembrane protein ... 201 1e-49
gi|344044320|gb|EGV39998.1| hypothetical protein CgS9114_10237 [... 199 3e-49
gi|145296199|ref|YP_001139020.1| hypothetical protein cgR_2117 [... 199 4e-49
gi|300783094|ref|YP_003763385.1| hypothetical protein AMED_1168 ... 197 1e-48
gi|300858919|ref|YP_003783902.1| hypothetical protein cpfrc_0150... 197 2e-48
>gi|15609372|ref|NP_216751.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
gi|15841727|ref|NP_336764.1| hypothetical protein MT2294 [Mycobacterium tuberculosis CDC1551]
gi|31793415|ref|NP_855908.1| transmembrane protein [Mycobacterium bovis AF2122/97]
78 more sequence titles
Length=271
Score = 539 bits (1388), Expect = 2e-151, Method: Compositional matrix adjust.
Identities = 271/271 (100%), Positives = 271/271 (100%), Gaps = 0/271 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK
Sbjct 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD
Sbjct 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA
Sbjct 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI
Sbjct 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
Query 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
RARRREKAGSPPPDKPMTVEQKLADRYGRRR
Sbjct 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
>gi|289754343|ref|ZP_06513721.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
gi|289694930|gb|EFD62359.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
Length=271
Score = 538 bits (1386), Expect = 3e-151, Method: Compositional matrix adjust.
Identities = 270/271 (99%), Positives = 271/271 (100%), Gaps = 0/271 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK
Sbjct 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD
Sbjct 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPS+AGKDPFVRDGFQQVYSINTGQVAA
Sbjct 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSMAGKDPFVRDGFQQVYSINTGQVAA 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI
Sbjct 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
Query 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
RARRREKAGSPPPDKPMTVEQKLADRYGRRR
Sbjct 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
>gi|118617015|ref|YP_905347.1| transmembrane protein [Mycobacterium ulcerans Agy99]
gi|118569125|gb|ABL03876.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99]
Length=274
Score = 438 bits (1127), Expect = 4e-121, Method: Compositional matrix adjust.
Identities = 217/274 (80%), Positives = 243/274 (89%), Gaps = 3/274 (1%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RLAFLLRPGW+ALALVV+AFTYLCFTVLAPWQLGKN KTSREN+QI ++L +P VP+K
Sbjct 1 MRRLAFLLRPGWIALALVVIAFTYLCFTVLAPWQLGKNTKTSRENRQINHALSSPAVPVK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLLPQQDSSAP+AQWR VTATG YL DVQVLARLRVV+GDQAFEVL PF VDGGPTVLVD
Sbjct 61 TLLPQQDSSAPEAQWRSVTATGHYLSDVQVLARLRVVDGDQAFEVLTPFAVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP+ GSHVPPIPR P QT+TITARLRD EP++AGK+PF RDGF+QVYSIN Q++
Sbjct 121 RGYVRPEPGSHVPPIPRAPDQTLTITARLRDFEPTMAGKEPFSRDGFEQVYSINAKQIST 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGV LAGSYLQL+E+QPGGLG++G+PHLD GPFLSYGIQWI+FGILAPIGLGYFAYAE+
Sbjct 181 LTGVPLAGSYLQLVENQPGGLGLIGLPHLDSGPFLSYGIQWIAFGILAPIGLGYFAYAEL 240
Query 241 ---RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
R R + +PP D PMTVEQKLADRYGRRR
Sbjct 241 RARRRETRAREDAPPADTPMTVEQKLADRYGRRR 274
>gi|183983300|ref|YP_001851591.1| transmembrane protein [Mycobacterium marinum M]
gi|183176626|gb|ACC41736.1| conserved transmembrane protein [Mycobacterium marinum M]
Length=274
Score = 438 bits (1126), Expect = 5e-121, Method: Compositional matrix adjust.
Identities = 217/274 (80%), Positives = 243/274 (89%), Gaps = 3/274 (1%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RLAFLLRPGW+ALALVV+AFTYLCFTVLAPWQLGKN KTSREN+QI ++L +P VP+K
Sbjct 1 MRRLAFLLRPGWIALALVVIAFTYLCFTVLAPWQLGKNTKTSRENRQINHALTSPAVPVK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLLPQQDSSAP+AQWR VTATG YL DVQVLARLRVV+GDQAFEVL PF VDGGPTVLVD
Sbjct 61 TLLPQQDSSAPEAQWRSVTATGHYLSDVQVLARLRVVDGDQAFEVLTPFAVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP+ GSHVPPIPR P QT+TITARLRD EP++AGK+PF RDGF+QVYSIN Q++
Sbjct 121 RGYVRPEPGSHVPPIPRAPDQTLTITARLRDFEPTMAGKEPFSRDGFEQVYSINAKQIST 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGV LAGSYLQL+E+QPGGLG++G+PHLD GPFLSYGIQWI+FGILAPIGLGYFAYAE+
Sbjct 181 LTGVPLAGSYLQLVENQPGGLGLIGLPHLDSGPFLSYGIQWIAFGILAPIGLGYFAYAEL 240
Query 241 ---RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
R R + +PP D PMTVEQKLADRYGRRR
Sbjct 241 RARRRETRAREDAPPADTPMTVEQKLADRYGRRR 274
>gi|240172448|ref|ZP_04751107.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=275
Score = 436 bits (1121), Expect = 2e-120, Method: Compositional matrix adjust.
Identities = 228/271 (85%), Positives = 246/271 (91%), Gaps = 0/271 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
+P LAFLLRPGW+ALALVV+AFTYLCFTVLAPWQLGKN KTSREN+QI YSL TPPVPL+
Sbjct 5 IPSLAFLLRPGWIALALVVIAFTYLCFTVLAPWQLGKNTKTSRENRQIDYSLHTPPVPLQ 64
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLLPQQDSSAP AQWRRVTATG YLPD QVLARLRVV+G+QAFEVLAPF VD GPTVLVD
Sbjct 65 TLLPQQDSSAPGAQWRRVTATGHYLPDAQVLARLRVVDGEQAFEVLAPFAVDDGPTVLVD 124
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP+ GSHVPPIPR P QTVTITARLRDSEP+ GK+PF RDGF QVYSI+T QV+
Sbjct 125 RGYVRPEPGSHVPPIPRPPEQTVTITARLRDSEPTAVGKEPFTRDGFPQVYSISTAQVST 184
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGV LAGSYLQLIEDQPGGLG +G+PHLD GPFLSYGIQWI+FGILAPIGLGYFAYAE+
Sbjct 185 LTGVPLAGSYLQLIEDQPGGLGPIGIPHLDAGPFLSYGIQWITFGILAPIGLGYFAYAEL 244
Query 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
RARRRE+ PP D+PMTVEQKLADRYGRRR
Sbjct 245 RARRRERREPPPADEPMTVEQKLADRYGRRR 275
>gi|296166125|ref|ZP_06848570.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898534|gb|EFG78095.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=277
Score = 425 bits (1093), Expect = 3e-117, Method: Compositional matrix adjust.
Identities = 222/277 (81%), Positives = 236/277 (86%), Gaps = 6/277 (2%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RLAFLLRPGW+AL LVVVAFTYLCFTVLAPWQLGK+ +TSREN+QI YSL+T PVPLK
Sbjct 1 MRRLAFLLRPGWIALGLVVVAFTYLCFTVLAPWQLGKHNRTSRENRQIEYSLNTAPVPLK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLL QQDSSAPDAQWRRVTATG YLPDVQVLARLRV+EG AFEVLAPFVVD GPTVLVD
Sbjct 61 TLLLQQDSSAPDAQWRRVTATGHYLPDVQVLARLRVIEGKPAFEVLAPFVVDAGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP GSHVPPIPR P TVTITARLRDS+ AGKDPF +DG QQVYSI+T QVAA
Sbjct 121 RGYVRPDQGSHVPPIPRPPGGTVTITARLRDSQAVAAGKDPFTQDGVQQVYSISTAQVAA 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LT V LAGSYLQL+EDQPGGLGV+GVP LD GPFLSYGIQWISFGI+AP+GLGYF Y+EI
Sbjct 181 LTKVPLAGSYLQLVEDQPGGLGVIGVPQLDAGPFLSYGIQWISFGIVAPLGLGYFVYSEI 240
Query 241 RARRREK------AGSPPPDKPMTVEQKLADRYGRRR 271
RARRREK A P P TVE KLADRYGR R
Sbjct 241 RARRREKERQAETAAPEAPAPPKTVEAKLADRYGRHR 277
>gi|289443745|ref|ZP_06433489.1| transmembrane protein [Mycobacterium tuberculosis T46]
gi|289416664|gb|EFD13904.1| transmembrane protein [Mycobacterium tuberculosis T46]
Length=254
Score = 424 bits (1089), Expect = 9e-117, Method: Compositional matrix adjust.
Identities = 217/232 (94%), Positives = 220/232 (95%), Gaps = 2/232 (0%)
Query 42 SRENQQIRYSLDTPP--VPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEG 99
R + R + + P PLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEG
Sbjct 23 KRHERTSRSGIPSTPRRFPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEG 82
Query 100 DQAFEVLAPFVVDGGPTVLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGK 159
DQAFEVLAPFVVDGGPTVLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGK
Sbjct 83 DQAFEVLAPFVVDGGPTVLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGK 142
Query 160 DPFVRDGFQQVYSINTGQVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGI 219
DPFVRDGFQQVYSINTGQVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGI
Sbjct 143 DPFVRDGFQQVYSINTGQVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGI 202
Query 220 QWISFGILAPIGLGYFAYAEIRARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
QWISFGILAPIGLGYFAYAEIRARRREKAGSPPPDKPMTVEQKLADRYGRRR
Sbjct 203 QWISFGILAPIGLGYFAYAEIRARRREKAGSPPPDKPMTVEQKLADRYGRRR 254
>gi|254821904|ref|ZP_05226905.1| hypothetical protein MintA_18362 [Mycobacterium intracellulare
ATCC 13950]
Length=276
Score = 410 bits (1053), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 212/276 (77%), Positives = 236/276 (86%), Gaps = 5/276 (1%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RLAF+LRPGW+ LALVV+AF YLCFTVLAPWQLGK+ +TSREN QI +SL+T PVP+K
Sbjct 1 MRRLAFVLRPGWIVLALVVIAFAYLCFTVLAPWQLGKHNRTSRENHQIEHSLNTAPVPVK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLLPQQ+S AP QWR+VTATG YLPDVQVLARLRV++ AFEVLAPFVVDGGPTVLVD
Sbjct 61 TLLPQQNSVAPGDQWRQVTATGHYLPDVQVLARLRVIDSKPAFEVLAPFVVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP GS VPPIPR P TVT+TARLR+SEP VAGKDPFV DG QQVYSI+TGQ+A
Sbjct 121 RGYVRPLEGSRVPPIPRPPADTVTVTARLRNSEPPVAGKDPFVGDGVQQVYSIDTGQIAV 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LT V LAGSYLQL++ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIGLGYFAY+EI
Sbjct 181 LTKVPLAGSYLQLVDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGLGYFAYSEI 240
Query 241 RARRREKAG-----SPPPDKPMTVEQKLADRYGRRR 271
RARR+EK +P P+ P TVE KLADRYGRRR
Sbjct 241 RARRQEKQSPAAALAPAPEAPPTVEDKLADRYGRRR 276
>gi|15827867|ref|NP_302130.1| hypothetical protein ML1644 [Mycobacterium leprae TN]
gi|221230344|ref|YP_002503760.1| hypothetical protein MLBr_01644 [Mycobacterium leprae Br4923]
gi|3150235|emb|CAA19213.1| hypothetical protein MLCB1243.32c [Mycobacterium leprae]
gi|13093419|emb|CAC30595.1| conserved membrane protein [Mycobacterium leprae]
gi|219933451|emb|CAR71739.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=270
Score = 406 bits (1043), Expect = 2e-111, Method: Compositional matrix adjust.
Identities = 201/271 (75%), Positives = 223/271 (83%), Gaps = 1/271 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M LA LLRPGW+AL LVV AFTYLCF VLAPWQLGKN + SREN QI YSL+TPPVP+K
Sbjct 1 MRHLALLLRPGWIALTLVVTAFTYLCFMVLAPWQLGKNTRMSRENNQIEYSLNTPPVPVK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLL QD S +QWR+VTATG+YLPDVQVLARLRVV+ QAFEVLAPFVVD GPTVLVD
Sbjct 61 TLLSHQDLSTSKSQWRQVTATGRYLPDVQVLARLRVVDSGQAFEVLAPFVVDDGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP+ GSHVPPIPR P + V+ITARLRDSEP + K+PF RDG QQVYSIN QVA
Sbjct 121 RGYVRPEPGSHVPPIPRPPNEAVSITARLRDSEPVMKDKEPFSRDGVQQVYSINIEQVAR 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LT + LAGSYLQL+++QPGGLGV+ +PHLD GPFLSYGIQWISFGI+APIGLGY AYAEI
Sbjct 181 LTKIPLAGSYLQLVDNQPGGLGVIDIPHLDAGPFLSYGIQWISFGIIAPIGLGYLAYAEI 240
Query 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
R R+EK P PM VE+KLADRYG R
Sbjct 241 RTHRQEKLAK-PSQAPMAVEEKLADRYGHPR 270
>gi|342857256|ref|ZP_08713912.1| hypothetical protein MCOL_00220 [Mycobacterium colombiense CECT
3035]
gi|342134589|gb|EGT87755.1| hypothetical protein MCOL_00220 [Mycobacterium colombiense CECT
3035]
Length=280
Score = 399 bits (1024), Expect = 3e-109, Method: Compositional matrix adjust.
Identities = 209/280 (75%), Positives = 232/280 (83%), Gaps = 9/280 (3%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL F LRPGW+ LALVVVAF YLCFTVLAPWQLGK+++TS+EN QI SL+T PVPLK
Sbjct 1 MRRLPFALRPGWIVLALVVVAFAYLCFTVLAPWQLGKHSRTSQENHQIESSLNTAPVPLK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
LLPQ++S+APDAQWR+VTATG YLPDVQVLARLRV++ AFEVL PFVVDGGPTVLVD
Sbjct 61 MLLPQRNSAAPDAQWRQVTATGHYLPDVQVLARLRVIDSKPAFEVLVPFVVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP GSHVPPIPR P QTVTITARLR+SE + KDPFV DG QQVYSI+T QVA
Sbjct 121 RGYVRPLEGSHVPPIPRPPTQTVTITARLRNSETAAVNKDPFVGDGVQQVYSIDTEQVAV 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LT V LAGSYLQLI+ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIGLGYFAY+EI
Sbjct 181 LTKVPLAGSYLQLIDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGLGYFAYSEI 240
Query 241 RARRREKAGSP---------PPDKPMTVEQKLADRYGRRR 271
RARR+E+ P P+ P +VE KLADRYGRRR
Sbjct 241 RARRQEQQQRPAAEVAPTPEAPEAPQSVEAKLADRYGRRR 280
>gi|108800314|ref|YP_640511.1| hypothetical protein Mmcs_3348 [Mycobacterium sp. MCS]
gi|119869442|ref|YP_939394.1| hypothetical protein Mkms_3410 [Mycobacterium sp. KMS]
gi|126435937|ref|YP_001071628.1| hypothetical protein Mjls_3359 [Mycobacterium sp. JLS]
gi|108770733|gb|ABG09455.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
gi|119695531|gb|ABL92604.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
gi|126235737|gb|ABN99137.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=270
Score = 390 bits (1002), Expect = 1e-106, Method: Compositional matrix adjust.
Identities = 194/271 (72%), Positives = 224/271 (83%), Gaps = 1/271 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M R AFLLRP WLAL +VV+AF YLCFTVLAPWQLGKN TSREN QI S+ PVP+
Sbjct 1 MKRWAFLLRPAWLALFVVVLAFAYLCFTVLAPWQLGKNTTTSRENDQIARSVTAEPVPVT 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
++LP+QDS+APD QW+RVTATG+YLPD QVLARLRV++GD A+EVL PF VDGGPTVLVD
Sbjct 61 SVLPRQDSAAPDEQWQRVTATGRYLPDAQVLARLRVIDGDPAYEVLVPFAVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYV P+ G+ VPPI P +TVTITARLRD+EP AGK+P +G QVY+IN GQ++A
Sbjct 121 RGYVTPEQGTEVPPIGPAPTETVTITARLRDAEPVPAGKEPLRENGTVQVYAINPGQISA 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGV LAGSYLQL+EDQPGGLGV+G+PHLD GPFLSYGIQWI+FGI+APIGLGYF YAE+
Sbjct 181 LTGVPLAGSYLQLVEDQPGGLGVIGLPHLDAGPFLSYGIQWIAFGIIAPIGLGYFIYAEV 240
Query 241 RARRREKAGSPPPDKPMTVEQKLADRYGRRR 271
R RRR+KA + P T E KLADRYGRRR
Sbjct 241 RQRRRDKAAA-DSTAPATPEDKLADRYGRRR 270
>gi|120404591|ref|YP_954420.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
gi|119957409|gb|ABM14414.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii
PYR-1]
Length=280
Score = 388 bits (996), Expect = 5e-106, Method: Compositional matrix adjust.
Identities = 194/280 (70%), Positives = 223/280 (80%), Gaps = 9/280 (3%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M R AFLLRP WLAL +VV+AF YLCFTVLAPWQLGKN KTSREN QI SLD P+ +
Sbjct 1 MRRWAFLLRPQWLALFVVVLAFAYLCFTVLAPWQLGKNTKTSRENDQISRSLDADPISVT 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
T+LP+QDS+APD QW++VTATG+YLP+ QVLARLR+++GD AFEVL PF VDGGPTVLVD
Sbjct 61 TVLPEQDSAAPDEQWQQVTATGRYLPEAQVLARLRLIDGDPAFEVLVPFAVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP GS VPPI LP TVTITARLRDSE K PF DG +QVYSINT Q+++
Sbjct 121 RGYVRPIEGSKVPPIDALPTGTVTITARLRDSEGVARDKTPFEADGVKQVYSINTEQISS 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
+TGV LAGSYLQL+ DQPGGLGV+ +PHLD GPFLSYGIQWI+FGI+APIG+GYF Y+EI
Sbjct 181 VTGVPLAGSYLQLVADQPGGLGVIPLPHLDAGPFLSYGIQWIAFGIIAPIGVGYFVYSEI 240
Query 241 RARRREKA---------GSPPPDKPMTVEQKLADRYGRRR 271
R RRREKA P P++ EQKLADRYG+RR
Sbjct 241 RVRRREKALADAASSESSGDEPAAPLSTEQKLADRYGKRR 280
>gi|118464619|ref|YP_881413.1| hypothetical protein MAV_2204 [Mycobacterium avium 104]
gi|118165906|gb|ABK66803.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=276
Score = 383 bits (983), Expect = 2e-104, Method: Compositional matrix adjust.
Identities = 205/276 (75%), Positives = 235/276 (86%), Gaps = 5/276 (1%)
Query 1 MPR----LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPP 56
MPR L+FLLRPGW+ LALVVVAF YLCFTVLAPWQLGK+++TS++N QI +SL TPP
Sbjct 1 MPRWLRGLSFLLRPGWVVLALVVVAFAYLCFTVLAPWQLGKHSRTSQQNHQIEHSLTTPP 60
Query 57 VPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPT 116
VPLKTLLPQQ+S+AP QWR+V+ATG YL DVQVLARLRV++ AFEVLAPFVVDGGPT
Sbjct 61 VPLKTLLPQQNSAAPAEQWRQVSATGHYLADVQVLARLRVIDSKPAFEVLAPFVVDGGPT 120
Query 117 VLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTG 176
VLVDRGYVRP GS VPPIPR P TVTITARLR+SEP+ AGKDPFV DG +QVYSI+T
Sbjct 121 VLVDRGYVRPLEGSRVPPIPRPPADTVTITARLRNSEPAAAGKDPFVGDGVRQVYSIDTE 180
Query 177 QVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFA 236
Q+A LT V LAGSYLQL++ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIG+GYFA
Sbjct 181 QIAVLTKVPLAGSYLQLVDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGVGYFA 240
Query 237 YAEIRARRREK-AGSPPPDKPMTVEQKLADRYGRRR 271
Y+E+RARR EK +P + P +V+ KLADRYGRRR
Sbjct 241 YSELRARRAEKQPAAPAAEAPQSVQDKLADRYGRRR 276
>gi|41408084|ref|NP_960920.1| hypothetical protein MAP1986 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396439|gb|AAS04303.1| hypothetical protein MAP_1986 [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|336461846|gb|EGO40702.1| hypothetical protein MAPs_26830 [Mycobacterium avium subsp. paratuberculosis
S397]
Length=275
Score = 376 bits (966), Expect = 1e-102, Method: Compositional matrix adjust.
Identities = 205/276 (75%), Positives = 236/276 (86%), Gaps = 6/276 (2%)
Query 1 MPR----LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPP 56
MPR L+FLLRPGW+ LALVVVAF YLCFTVLAPWQLGK+++TS++N QI +SL TPP
Sbjct 1 MPRWLRGLSFLLRPGWVVLALVVVAFAYLCFTVLAPWQLGKHSRTSQQNHQIEHSLTTPP 60
Query 57 VPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPT 116
VPLKTLLPQQ+S+AP QWR+V+ATG YL DVQVLARLRV++ AFEVLAPFVVDGGPT
Sbjct 61 VPLKTLLPQQNSAAPAEQWRQVSATGHYLADVQVLARLRVIDSKPAFEVLAPFVVDGGPT 120
Query 117 VLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTG 176
VLVDRGYVRP GS VPPIPR P TVTITARLR+SEP+ AGKDPFV DG +QVYSI+T
Sbjct 121 VLVDRGYVRPLEGSRVPPIPRPPADTVTITARLRNSEPA-AGKDPFVGDGVRQVYSIDTE 179
Query 177 QVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFA 236
Q+A LT V LAGSYLQL++ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIG+GYFA
Sbjct 180 QIAVLTKVPLAGSYLQLVDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGVGYFA 239
Query 237 YAEIRARRREK-AGSPPPDKPMTVEQKLADRYGRRR 271
Y+E+RARR E+ +P P+ P +V+ KLADRYGRRR
Sbjct 240 YSELRARRAERQPAAPAPEAPQSVQDKLADRYGRRR 275
>gi|118470407|ref|YP_888587.1| hypothetical protein MSMEG_4311 [Mycobacterium smegmatis str.
MC2 155]
gi|118171694|gb|ABK72590.1| conserved hypothetical protein [Mycobacterium smegmatis str.
MC2 155]
Length=277
Score = 374 bits (959), Expect = 1e-101, Method: Compositional matrix adjust.
Identities = 192/278 (70%), Positives = 218/278 (79%), Gaps = 8/278 (2%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRP WLAL +VV+AF YLCFTVLAPWQLGKN KTSREN QI SL PVPL
Sbjct 1 MRRLGFLLRPQWLALIVVVLAFAYLCFTVLAPWQLGKNTKTSRENSQIANSLQAEPVPLT 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
+LP QDS++ D QWRRVTATG+YLP+ QVLARLRV+EG+ AFEVL PF V+GGPT+LVD
Sbjct 61 DILPHQDSTS-DDQWRRVTATGRYLPEGQVLARLRVIEGEPAFEVLTPFAVEGGPTILVD 119
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP GS VP I P TV+ITARLRDSE GK+PF DG QVYSINTGQV+
Sbjct 120 RGYVRPVEGSGVPAIDPPPTDTVSITARLRDSEAVATGKEPFRADGALQVYSINTGQVSQ 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTG LAGSYLQL+++QPGGLG + +PHLD GPFLSYGIQWI+FGI+APIGLGYF YAEI
Sbjct 180 LTGTPLAGSYLQLVDNQPGGLGAIPLPHLDAGPFLSYGIQWIAFGIIAPIGLGYFMYAEI 239
Query 241 RARRREK-------AGSPPPDKPMTVEQKLADRYGRRR 271
+ RRRE+ A P P +T E+KLADRYG+RR
Sbjct 240 QQRRRERAAQAKKDAAGPRPAAELTPEEKLADRYGKRR 277
>gi|333990301|ref|YP_004522915.1| transmembrane protein [Mycobacterium sp. JDM601]
gi|333486269|gb|AEF35661.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=277
Score = 358 bits (920), Expect = 4e-97, Method: Compositional matrix adjust.
Identities = 189/277 (69%), Positives = 216/277 (78%), Gaps = 6/277 (2%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RLAFLLRP WLALA+VV+AF YLCFTVLAPWQLGKN T+R N Q+ +L PVPL
Sbjct 1 MRRLAFLLRPSWLALAVVVLAFAYLCFTVLAPWQLGKNTTTTRANSQLERALTAEPVPLT 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
T+LP QDSSAPD QW+ VTATG+YLPD QVL RLR+++G AFEVL PF V GGPTVLV+
Sbjct 61 TVLPHQDSSAPDEQWQPVTATGRYLPDAQVLVRLRLIDGAPAFEVLTPFAVAGGPTVLVN 120
Query 121 RGYVRPQV-GSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA 179
RGYVR GS +P I P V+ITARLRDS+ + GK+PF +GF+QVYSINT QVA
Sbjct 121 RGYVRTDDGGSRMPEITPPPDGQVSITARLRDSQAVIPGKNPFRENGFRQVYSINTEQVA 180
Query 180 ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE 239
A+T V L GSYLQL++DQPGGLGV+ +P D GPFLSYGIQWI+FGILAPIGLGYFA+AE
Sbjct 181 AVTEVPLTGSYLQLVDDQPGGLGVIALPRRDAGPFLSYGIQWIAFGILAPIGLGYFAFAE 240
Query 240 IRARR-----REKAGSPPPDKPMTVEQKLADRYGRRR 271
+RARR A S P PMTVEQKLADRYGRRR
Sbjct 241 LRARRSESSAAADADSDEPAPPMTVEQKLADRYGRRR 277
>gi|145223474|ref|YP_001134152.1| hypothetical protein Mflv_2887 [Mycobacterium gilvum PYR-GCK]
gi|145215960|gb|ABP45364.1| putative conserved transmembrane protein [Mycobacterium gilvum
PYR-GCK]
Length=279
Score = 353 bits (906), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 186/275 (68%), Positives = 215/275 (79%), Gaps = 6/275 (2%)
Query 3 RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL 62
R AFLLRP WLAL +VV AF YLCFTVLAPWQLGKN +TSREN QI SL P+P+ ++
Sbjct 5 RWAFLLRPQWLALFVVVAAFAYLCFTVLAPWQLGKNTQTSRENAQISRSLGAEPLPVTSV 64
Query 63 LPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRG 122
LP QDS+AP QW+RVTATG+YLPD QVLARLR+++GD AFEVL PF VDGGPTVLVDRG
Sbjct 65 LPHQDSAAPQEQWQRVTATGRYLPDAQVLARLRLIDGDPAFEVLVPFAVDGGPTVLVDRG 124
Query 123 YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALT 182
YVRP GS P I P +TVTITARLRDSE K+PF DG QQVYSIN Q++ LT
Sbjct 125 YVRPVAGSQPPAIDAPPSETVTITARLRDSEGLARDKEPFQVDGVQQVYSININQISTLT 184
Query 183 GVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRA 242
GV L GSYLQL+++QPGGLGV+ +PHLD GPFLSYGIQWI+FGI+APIG+GYF Y+EI+
Sbjct 185 GVPLVGSYLQLVDNQPGGLGVIPLPHLDAGPFLSYGIQWIAFGIIAPIGVGYFVYSEIKV 244
Query 243 RRREKAGSPPPDKPM------TVEQKLADRYGRRR 271
RRREKA + + T EQKLADRYG+RR
Sbjct 245 RRREKALAAAAAESAEAGAAPTTEQKLADRYGKRR 279
>gi|315443835|ref|YP_004076714.1| hypothetical protein Mspyr1_22300 [Mycobacterium sp. Spyr1]
gi|315262138|gb|ADT98879.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=277
Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 187/277 (68%), Positives = 216/277 (78%), Gaps = 6/277 (2%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M R AFLLRP WLAL +VV AF YLCFTVLAPWQLGKN +TSREN QI SL P+P+
Sbjct 1 MRRWAFLLRPQWLALFVVVAAFAYLCFTVLAPWQLGKNTQTSRENAQISRSLGAEPLPVT 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
++LP QDS+AP QW+RVTATG+YLPD QVLARLR+++GD AFEVL PF VDGGPTVLVD
Sbjct 61 SVLPHQDSAAPQEQWQRVTATGRYLPDAQVLARLRLIDGDPAFEVLVPFAVDGGPTVLVD 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP GS P I P +TVTITARLRDSE K+PF DG QQVYSIN Q++
Sbjct 121 RGYVRPVAGSQPPAIDPPPSETVTITARLRDSEGLARDKEPFQVDGVQQVYSININQIST 180
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LTGV L GSYLQL+++QPGGLGV+ +PHLD GPFLSYGIQWI+FGI+APIG+GYF Y+EI
Sbjct 181 LTGVPLVGSYLQLVDNQPGGLGVIPLPHLDAGPFLSYGIQWIAFGIIAPIGVGYFVYSEI 240
Query 241 RARRREKAGSPPPDKPM------TVEQKLADRYGRRR 271
+ RRREKA + + T EQKLADRYG+RR
Sbjct 241 KVRRREKALAAAAAESAEAGTAPTTEQKLADRYGKRR 277
>gi|169628987|ref|YP_001702636.1| hypothetical protein MAB_1899c [Mycobacterium abscessus ATCC
19977]
gi|169240954|emb|CAM61982.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=271
Score = 322 bits (824), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 171/272 (63%), Positives = 196/272 (73%), Gaps = 3/272 (1%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RLAFLLRPGW+ALALVVVAF YLCFTVLAPWQLGKN KTSREN +I S++ PVPLK
Sbjct 1 MRRLAFLLRPGWIALALVVVAFAYLCFTVLAPWQLGKNTKTSRENNRIAQSVNADPVPLK 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
L S DA+WRRVTATG YLPD QVLARLRVV+ A+E L F VD GP +LV+
Sbjct 61 NELRPDHSMPEDAEWRRVTATGHYLPDRQVLARLRVVDAKPAYEALTVFQVDDGPAILVN 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP+ G+ VPPIP P VTI ARLR+ E + K PF+ +G QVYSI QV+
Sbjct 121 RGYVRPEQGTSVPPIPPAPAGQVTINARLREPE-QQSEKSPFLENGQYQVYSIVPVQVST 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
L + LAG YLQL E QPGGLG + +P LD GPFLSYGIQWI+FGILAPIGLGYF ++EI
Sbjct 180 LVKIPLAGPYLQLSEGQPGGLGAIPLPQLDAGPFLSYGIQWIAFGILAPIGLGYFVFSEI 239
Query 241 R--ARRREKAGSPPPDKPMTVEQKLADRYGRR 270
R + P P T E++LADRYGRR
Sbjct 240 RQRRAAAAAVKAVKPGTPQTTEERLADRYGRR 271
>gi|226360326|ref|YP_002778104.1| hypothetical protein ROP_09120 [Rhodococcus opacus B4]
gi|226238811|dbj|BAH49159.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=293
Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 145/294 (50%), Positives = 185/294 (63%), Gaps = 24/294 (8%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRPGWL LALVV F ++CF VLAPWQLGKN T NQ I S+D PVPL+
Sbjct 1 MRRLRFLLRPGWLVLALVVAGFAFMCFYVLAPWQLGKNTSTEHRNQLIADSVDAEPVPLE 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLL ++ PD +WRRVTATG Y+ + +L RLR +E A+EV+ P + G T+LV+
Sbjct 61 TLLSGA-AANPDDEWRRVTATGSYVQNSDLLVRLRSIESQPAYEVVTPLQLTDGRTILVN 119
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP G+ PP+ P VT+ R+R SE ++AGK+P +G +QVY I+ GQ+
Sbjct 120 RGYVRPIQGTEAPPVDPPPSGPVTLDGRVRKSEGTIAGKEPIDENGLRQVYYIDAGQIGG 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
G L +Y+QL DQPGGLG + +P LD GP+LSYG+QW++FGI+AP+GL YF AE
Sbjct 180 FIGTGLVDAYIQLEPDQPGGLGTIPLPQLDAGPYLSYGLQWLAFGIMAPLGLAYFIRAEW 239
Query 241 RARRREKAGSPPPD-----------KPMT------------VEQKLADRYGRRR 271
R RR+EK+ D KP T E KLADRYG+ R
Sbjct 240 RERRKEKSAQASDDAAPAPAPVARKKPFTRNKPVESAPRTAAEAKLADRYGKGR 293
>gi|333918909|ref|YP_004492490.1| transmembrane protein [Amycolicicoccus subflavus DQS3-9A1]
gi|333481130|gb|AEF39690.1| Transmembrane protein [Amycolicicoccus subflavus DQS3-9A1]
Length=285
Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 137/286 (48%), Positives = 182/286 (64%), Gaps = 16/286 (5%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M R +FL RPGWLAL VV F YLCFT+LAPWQLGKN T N I S++ PV +
Sbjct 1 MRRFSFLFRPGWLALVAVVGVFAYLCFTILAPWQLGKNTATEHRNTLIERSVEAEPVSIG 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
L + D +WRRVT +G YLP+ +V+ARLR +EG +FEVL PF +D G VL++
Sbjct 61 ELAGSGATPERDDEWRRVTLSGTYLPEHEVVARLRSIEGTPSFEVLTPFRLDDGSEVLIN 120
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RG+V + G+ VP P T+ R+R E ++ G++P + DG QVYSIN G++ A
Sbjct 121 RGFVHTEQGTDVPEFAPAPAGQRTLEGRIRMPEAAL-GREPIISDGTTQVYSINPGEIGA 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
L + L G Y+QL +QPGGLG++G+P LD GPFLSYG+QWI+FGI+AP+GL YF AE+
Sbjct 180 LADISLPGYYIQLAPEQPGGLGLIGLPQLDRGPFLSYGLQWIAFGIMAPLGLLYFVRAEL 239
Query 241 RARRREKAGSP----PPDKPM-----------TVEQKLADRYGRRR 271
R R+ ++ P P P+ T E+KLA RYG+RR
Sbjct 240 RERKTSRSNEPGTADPDSGPVVYAEAEQATSRTPEEKLASRYGKRR 285
>gi|325677010|ref|ZP_08156681.1| transmembrane protein [Rhodococcus equi ATCC 33707]
gi|325552172|gb|EGD21863.1| transmembrane protein [Rhodococcus equi ATCC 33707]
Length=322
Score = 266 bits (681), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 134/261 (52%), Positives = 172/261 (66%), Gaps = 5/261 (1%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRPGWLALA VV F ++CFTVLAPWQLGKN +T + N + SL+ V +
Sbjct 1 MRRLTFLLRPGWLALAAVVAGFAFMCFTVLAPWQLGKNTRTEQRNGLLEQSLNAESVSID 60
Query 61 TLLPQQDSSAP--DAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVL 118
TLL D P + +WRRV TG Y+PD +L RLR VE AFEVL P + G T+L
Sbjct 61 TLL---DGGGPTENDEWRRVLVTGTYVPDSDLLVRLRSVEDKPAFEVLTPLRMSDGDTLL 117
Query 119 VDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQV 178
V+RGYVRP+ G+ PPIP P VT+ R+R SE +V GK+P G +QVY I++GQ+
Sbjct 118 VNRGYVRPEQGTQAPPIPAPPTGEVTVEGRIRMSEGTVPGKEPINEAGTRQVYYIDSGQI 177
Query 179 AALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA 238
G L YLQL + QPGGLG + +P +D GP+LSYG+QW++FGI+AP+GL YF A
Sbjct 178 GQFIGTDLVTGYLQLDDAQPGGLGTIPLPQIDAGPYLSYGLQWLAFGIMAPLGLAYFVRA 237
Query 239 EIRARRREKAGSPPPDKPMTV 259
E+R RR+ K + P P T+
Sbjct 238 ELRERRKAKQRTAPTTAPDTL 258
>gi|111018200|ref|YP_701172.1| hypothetical protein RHA1_ro01187 [Rhodococcus jostii RHA1]
gi|110817730|gb|ABG93014.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=293
Score = 264 bits (675), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 144/294 (49%), Positives = 183/294 (63%), Gaps = 24/294 (8%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRPGWL LALVV F ++CF VLAPWQLGKN T NQ I S+D PVPL+
Sbjct 1 MRRLRFLLRPGWLVLALVVAGFAFMCFYVLAPWQLGKNTSTEHRNQLIADSVDADPVPLE 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
TLL + PD +WRRVTATG Y+ + +L RLR +E A+EVL P + G T+LV+
Sbjct 61 TLLSGA-APNPDDEWRRVTATGAYVQNSDLLVRLRSIESQPAYEVLTPLQLTDGRTILVN 119
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP G+ PP+ P VT+ R+R SE ++AGK+P +G +QVY I+ GQ+
Sbjct 120 RGYVRPVQGTEPPPVDPPPAGQVTLDGRVRKSEGTIAGKEPIDENGLRQVYYIDAGQIGG 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
G L +Y+QL QPGGLG + +P LD GP+LSYG+QW++FGI+AP+GL YF AE
Sbjct 180 FIGTDLVDAYVQLEPGQPGGLGTIPLPQLDAGPYLSYGLQWLAFGIMAPLGLAYFIRAEW 239
Query 241 RARRREKAGSPPPD-----------------KPM------TVEQKLADRYGRRR 271
R RR+EK+ D KP+ E KLADRYG+ R
Sbjct 240 RERRKEKSAKTSDDSAPVPTPVARKKPFARSKPVESAPRTAAEAKLADRYGKGR 293
>gi|312140243|ref|YP_004007579.1| integral membrane protein [Rhodococcus equi 103S]
gi|311889582|emb|CBH48899.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=325
Score = 261 bits (668), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 130/247 (53%), Positives = 166/247 (68%), Gaps = 5/247 (2%)
Query 3 RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL 62
RL FLLRPGWLALA VV F ++CFTVLAPWQLGKN +T + N + SL+ V + TL
Sbjct 6 RLTFLLRPGWLALAAVVAGFAFMCFTVLAPWQLGKNTRTEQRNGLLEQSLNAESVSIDTL 65
Query 63 LPQQDSSAP--DAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
L D P + +WRRV TG Y+PD +L RLR VE AFEVL P + G T+LV+
Sbjct 66 L---DGGGPTENDEWRRVLVTGTYVPDSDLLVRLRSVEDKPAFEVLTPLRMSDGDTLLVN 122
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP+ G+ PPIP P VT+ R+R SE +V GK+P G +QVY I++GQ+
Sbjct 123 RGYVRPEQGTQAPPIPAPPTGEVTVEGRIRMSEGTVPGKEPINEAGTRQVYYIDSGQIGQ 182
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
G L YLQL + QPGGLG + +P +D GP+LSYG+QW++FGI+AP+GL YF AE+
Sbjct 183 FIGTDLVTGYLQLDDAQPGGLGTIPLPQIDAGPYLSYGLQWLAFGIMAPLGLAYFVRAEL 242
Query 241 RARRREK 247
R RR+ K
Sbjct 243 RERRKAK 249
>gi|54023598|ref|YP_117840.1| hypothetical protein nfa16300 [Nocardia farcinica IFM 10152]
gi|54015106|dbj|BAD56476.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=293
Score = 257 bits (656), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/296 (50%), Positives = 181/296 (62%), Gaps = 28/296 (9%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRP W+ L +VVVAF YLCFTVLAPWQLGKN T NQ I S+ PV +
Sbjct 1 MRRLTFLLRPSWVILGVVVVAFAYLCFTVLAPWQLGKNTATEERNQLIADSVRAEPVDVT 60
Query 61 TLLPQQDSSA-PDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLV 119
+L D+ A P ++WRRV ATG ++P+ VL RLR ++G + VLA F +D G T+LV
Sbjct 61 GVL---DAPADPRSEWRRVIATGGFVPESTVLVRLRHLDGAPGYAVLAAFRLDDGRTLLV 117
Query 120 DRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA 179
DRG V GS P +P P + AR+R SE A + P V DG++QVYSI+T Q
Sbjct 118 DRGLVAAVDGSRPPQVPDPPTGPQRLEARVRLSEGVSAERPPLVEDGYRQVYSIDTAQAG 177
Query 180 ALTGVQLA-------GSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGL 232
+ G +L G YLQL E QPG +P LD GP+LSYG+QW++FGI+AP+GL
Sbjct 178 TVMGQRLTPIPVGERGGYLQLSEGQPGAFAPTPLPQLDAGPYLSYGLQWLAFGIMAPLGL 237
Query 233 GYFAYAEIRARRREKAGSPPPDKPMT-----------------VEQKLADRYGRRR 271
GYF YAE+R RRREKAG PP P T E +LADRYGRRR
Sbjct 238 GYFVYAELRERRREKAGQPPTADPGTAEPATGPAEPEPAPAPSTEARLADRYGRRR 293
>gi|229490254|ref|ZP_04384096.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
gi|229322786|gb|EEN88565.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=312
Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/249 (53%), Positives = 165/249 (67%), Gaps = 1/249 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRPGWL LA VV F YLCFTVLAPWQLGKN KT N I S++ VP+
Sbjct 1 MRRLKFLLRPGWLVLAAVVGLFAYLCFTVLAPWQLGKNTKTEHRNDLISNSINAETVPIG 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
++ + APD +WR +TA G YLPD +L RL+ +EG ++E+L PF +D G T+LV+
Sbjct 61 DVI-ADSTIAPDDEWRNITAAGTYLPDADILVRLQSIEGAPSYEILTPFRLDDGRTILVN 119
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP G+ PPI P VT+ R+R SE + G+ P DG +QVYSI+ +
Sbjct 120 RGYVRPINGAEAPPIAAPPTDPVTLNGRVRLSEGTAPGRVPMFEDGAKQVYSIDAQPIGE 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
G L +Y+QL DQPGGLG + +P LD GP+LSYG QW++FGI+AP+GL YF AE
Sbjct 180 FIGTDLIDAYIQLEPDQPGGLGTIPLPQLDAGPYLSYGFQWLAFGIMAPLGLAYFIRAEW 239
Query 241 RARRREKAG 249
R RR+EKA
Sbjct 240 RERRKEKAA 248
>gi|226307151|ref|YP_002767111.1| hypothetical protein RER_36640 [Rhodococcus erythropolis PR4]
gi|226186268|dbj|BAH34372.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=312
Score = 252 bits (644), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 130/249 (53%), Positives = 165/249 (67%), Gaps = 1/249 (0%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M RL FLLRPGWL LA VV F YLCFTVLAPWQLGKN KT N I S++ VP+
Sbjct 1 MRRLKFLLRPGWLVLAAVVGLFAYLCFTVLAPWQLGKNTKTEHRNDLISNSINAETVPIG 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD 120
++ + APD +WR +TA G YLPD +L RL+ +EG ++E+L PF +D G T+LV+
Sbjct 61 DVVADS-TVAPDDEWRNITAAGTYLPDADILVRLQSIEGAPSYEILTPFRLDDGRTILVN 119
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
RGYVRP G+ PPI P VT+ R+R SE + G+ P DG +QVYSI+ +
Sbjct 120 RGYVRPINGAEAPPIAAPPTDPVTLNGRVRLSEGTAPGRVPMFEDGAKQVYSIDAQPIGE 179
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
G L +Y+QL DQPGGLG + +P LD GP+LSYG QW++FGI+AP+GL YF AE
Sbjct 180 FIGTDLIDAYIQLEPDQPGGLGTIPLPQLDAGPYLSYGFQWLAFGIMAPLGLAYFIRAEW 239
Query 241 RARRREKAG 249
R RR+EKA
Sbjct 240 RERRKEKAA 248
>gi|296140408|ref|YP_003647651.1| transmembrane protein [Tsukamurella paurometabola DSM 20162]
gi|296028542|gb|ADG79312.1| putative transmembrane protein [Tsukamurella paurometabola DSM
20162]
Length=294
Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 119/242 (50%), Positives = 161/242 (67%), Gaps = 0/242 (0%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
+ +P W+ALA+ V+AFT LC++VLAPWQL KN+ TS NQQI S++ PVP LL +
Sbjct 8 VFQPRWIALAVAVLAFTALCWSVLAPWQLNKNSSTSHRNQQISDSVNADPVPAAQLLGGR 67
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP 126
DA+WR+VT TG+YL D Q LARLR +G+ A+EVL PF + G T LVDRG+VR
Sbjct 68 TEVPKDAEWRKVTLTGRYLVDKQSLARLRNQDGNPAYEVLVPFAANDGATYLVDRGFVRT 127
Query 127 QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL 186
G +P I P VT+ AR+R E + A + P V + QVY+I+ + G+
Sbjct 128 PTGGVIPDIAPAPSDVVTVVARIRAPETTSADRGPRVEGSYLQVYAIDPRAIGPAQGITF 187
Query 187 AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE 246
A YL L E+QPGGL + +P LD GP+LSYG+QW++FG++AP+ LGYF YAE+R RR +
Sbjct 188 APGYLNLTENQPGGLAPVPLPMLDAGPYLSYGLQWLAFGVMAPLALGYFVYAELRRRRED 247
Query 247 KA 248
+A
Sbjct 248 RA 249
>gi|326382468|ref|ZP_08204159.1| hypothetical protein SCNU_06000 [Gordonia neofelifaecis NRRL
B-59395]
gi|326198587|gb|EGD55770.1| hypothetical protein SCNU_06000 [Gordonia neofelifaecis NRRL
B-59395]
Length=313
Score = 235 bits (600), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 122/248 (50%), Positives = 158/248 (64%), Gaps = 2/248 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L LRPGWL LA+ VV F CFTVLAPWQLGKN+ T N IR + T PVP+ L
Sbjct 2 LKSFLRPGWLLLAVFVVTFAAACFTVLAPWQLGKNSDTEHRNDLIRTAESTQPVPIDELA 61
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVL-VDRG 122
P PD++WR V TG YL D QV RLRVV+ A EV+ PF V G VL VDRG
Sbjct 62 PAGRPLDPDSEWREVRVTGHYLDDKQVQIRLRVVDERPAVEVVTPFQVAGTDRVLFVDRG 121
Query 123 YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALT 182
YVRP V ++ +P P + VTITARLR +E + GK+P +G + Y+I+TG + T
Sbjct 122 YVRP-VDNNRVDVPPAPTEEVTITARLRKTESTSPGKEPRTENGVRTAYTIDTGLIGEST 180
Query 183 GVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRA 242
+ YLQL +QPG LG + +P L+ GP+LSYG+QW++FG++AP+G YF Y+E++A
Sbjct 181 ALTSDRLYLQLSPNQPGSLGEIALPQLESGPYLSYGLQWLAFGVMAPLGAAYFIYSEVKA 240
Query 243 RRREKAGS 250
RR K +
Sbjct 241 RRTAKHNA 248
>gi|262202992|ref|YP_003274200.1| hypothetical protein Gbro_3101 [Gordonia bronchialis DSM 43247]
gi|262086339|gb|ACY22307.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
Length=327
Score = 224 bits (571), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 116/241 (49%), Positives = 154/241 (64%), Gaps = 3/241 (1%)
Query 1 MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK 60
M L +LRPGW+AL +VV+AF CFT+LAPWQLGKN+ T N IR + DT PVPL
Sbjct 1 MHVLRTVLRPGWIALGVVVIAFAVACFTLLAPWQLGKNSSTEHRNDLIRAAADTGPVPLA 60
Query 61 TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVL-V 119
L P A + +WR VT +G YLP Q L RLR V+ A EV+ PF V G V+ V
Sbjct 61 QLAPTGAFDASN-EWREVTISGHYLPAAQTLVRLRNVDEQAAIEVVTPFAVAGTDRVIAV 119
Query 120 DRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA 179
DRG+VRP G+ PPIP +P VTI+ R+R E + G+ + VY+I+ ++
Sbjct 120 DRGFVRPAEGA-APPIPAVPTGEVTISGRIRAPEGTTPGRGAHSEENMLAVYTIDPAEIG 178
Query 180 ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE 239
TG+++ G Y+QL QPG LG + +P LD GP+LSYG+QW++FGI+AP+G YF Y+E
Sbjct 179 RATGLRMDGFYVQLSPAQPGSLGEIPLPQLDSGPYLSYGLQWLAFGIMAPLGAAYFLYSE 238
Query 240 I 240
I
Sbjct 239 I 239
>gi|259507756|ref|ZP_05750656.1| membrane protein [Corynebacterium efficiens YS-314]
gi|259164549|gb|EEW49103.1| membrane protein [Corynebacterium efficiens YS-314]
Length=336
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/248 (48%), Positives = 154/248 (63%), Gaps = 8/248 (3%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L PGW+ LV++ F+Y FT+LAPWQL K+ + + N QI+ + VP +
Sbjct 16 LRAFLSPGWILSLLVMLTFSYAAFTMLAPWQLNKDEEIIQRNTQIQEGYNREVVPYSEVF 75
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
S P+ +W RV+ TGQYLP + L RLR VE AF+ L PF ++ G TVLV+RG+
Sbjct 76 DADGSVPPENEWYRVSLTGQYLPQNEALLRLRPVETTPAFQSLTPFQLEDGRTVLVNRGF 135
Query 124 VRPQVGSHVP---PIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
Q G+ VP P P PV V I ARL + P A P G++QVY INT QV
Sbjct 136 EASQ-GTIVPEMEPAPSTPVTIVGI-ARLNEGMPENA---PLEDSGYKQVYGINTQQVGE 190
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
L G+ L Y+QL++DQPG L + +P LD G LSYG+QWI+FG++APIGLGYF +AE+
Sbjct 191 LVGLDLGEDYVQLLDDQPGVLNAMPIPQLDRGSHLSYGMQWIAFGVMAPIGLGYFIWAEM 250
Query 241 RARRREKA 248
R RRR+KA
Sbjct 251 RERRRDKA 258
>gi|25028695|ref|NP_738749.1| hypothetical protein CE2139 [Corynebacterium efficiens YS-314]
gi|23493981|dbj|BAC18949.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=364
Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 117/248 (48%), Positives = 154/248 (63%), Gaps = 8/248 (3%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L PGW+ LV++ F+Y FT+LAPWQL K+ + + N QI+ + VP +
Sbjct 44 LRAFLSPGWILSLLVMLTFSYAAFTMLAPWQLNKDEEIIQRNTQIQEGYNREVVPYSEVF 103
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
S P+ +W RV+ TGQYLP + L RLR VE AF+ L PF ++ G TVLV+RG+
Sbjct 104 DADGSVPPENEWYRVSLTGQYLPQNEALLRLRPVETTPAFQSLTPFQLEDGRTVLVNRGF 163
Query 124 VRPQVGSHVP---PIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA 180
Q G+ VP P P PV V I ARL + P A P G++QVY INT QV
Sbjct 164 EASQ-GTIVPEMEPAPSTPVTIVGI-ARLNEGMPENA---PLEDSGYKQVYGINTQQVGE 218
Query 181 LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
L G+ L Y+QL++DQPG L + +P LD G LSYG+QWI+FG++APIGLGYF +AE+
Sbjct 219 LVGLDLGEDYVQLLDDQPGVLNAMPIPQLDRGSHLSYGMQWIAFGVMAPIGLGYFIWAEM 278
Query 241 RARRREKA 248
R RRR+KA
Sbjct 279 RERRRDKA 286
>gi|134098163|ref|YP_001103824.1| hypothetical protein SACE_1577 [Saccharopolyspora erythraea NRRL
2338]
gi|291007558|ref|ZP_06565531.1| hypothetical protein SeryN2_23789 [Saccharopolyspora erythraea
NRRL 2338]
gi|133910786|emb|CAM00899.1| hypothetical protein SACE_1577 [Saccharopolyspora erythraea NRRL
2338]
Length=299
Score = 214 bits (544), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/251 (46%), Positives = 153/251 (61%), Gaps = 6/251 (2%)
Query 3 RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPL-KT 61
RL FLLRPGW+ L +VV F LCFT+LAPWQ +N + N I S PP P+ +
Sbjct 2 RLKFLLRPGWIGLIGLVVVFATLCFTLLAPWQFSRNDQAQARNNAIAESFHAPPKPIGEV 61
Query 62 LLPQQDSSAPD--AQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLV 119
L P Q APD +W RVT TG+YLP+ + LA R V G+ AFEVL PF + G T+LV
Sbjct 62 LAPGQ---APDVRTEWARVTVTGRYLPEGETLAWQRTVLGEPAFEVLTPFRLADGTTLLV 118
Query 120 DRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA 179
DRG+VRP G+ P P VT+TAR+R E + F D + VY++N+ V
Sbjct 119 DRGFVRPVDGTRAPDYAPAPAGEVTLTARVRSDERDSENRPAFSHDDHRWVYAVNSATVG 178
Query 180 ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE 239
A TG+ L Y L+E QPGGL L +P L+ GP+ SY +QWI+FG++A + +GY Y+E
Sbjct 179 ASTGLDLRPGYFALVEGQPGGLSPLPLPRLESGPYFSYALQWIAFGVMAILAIGYLIYSE 238
Query 240 IRARRREKAGS 250
+R ++ + G+
Sbjct 239 LRPQQGTEGGA 249
>gi|255324870|ref|ZP_05365979.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
gi|255298047|gb|EET77355.1| conserved hypothetical protein [Corynebacterium tuberculostearicum
SK141]
Length=335
Score = 211 bits (537), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 109/237 (46%), Positives = 149/237 (63%), Gaps = 2/237 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ L L VVAF+YL FTVLAPWQLGK+ N+ I ++ + P P++ L+
Sbjct 2 LKTFLKPGWVLLLLFVVAFSYLAFTVLAPWQLGKDDDIVERNELITHAYEADPQPVEDLV 61
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
+ + D +W R T G+YLP +VL RLR V+ +++ L PF D G T+LV+RG+
Sbjct 62 -DDNGAIKDDEWSRATLHGRYLPQDEVLLRLRPVDSGPSYQSLVPFRTDSGLTILVNRGW 120
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
V+ + VP IP P T+T +R E P R+G+QQVYSI+T Q+A+L
Sbjct 121 VKAGEANAVPDIPDAPSGETTLTGMIRADEAEHQSA-PIKREGYQQVYSIHTEQIASLID 179
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LA Y+QL DQPG L + +P LD G LSYG QWI+FGI+AP+GLGYF ++EI
Sbjct 180 APLAHDYIQLSADQPGVLNPMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFVWSEI 236
>gi|227503206|ref|ZP_03933255.1| transmembrane protein [Corynebacterium accolens ATCC 49725]
gi|227076267|gb|EEI14230.1| transmembrane protein [Corynebacterium accolens ATCC 49725]
Length=323
Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 105/235 (45%), Positives = 147/235 (63%), Gaps = 2/235 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ + L VVAF+YL F+VLAPWQLGK+ N+ I ++ + P P+ ++
Sbjct 2 LKTFLKPGWVLMLLFVVAFSYLAFSVLAPWQLGKDDDIVERNENITHAYEADPQPIDQVV 61
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
D + +W R T G YLP+ +VL RLR +++ L PF D G T+L++RG+
Sbjct 62 -DDDGAISGDEWSRTTLKGHYLPEDEVLLRLRPAGSGPSYQSLVPFRTDAGLTMLINRGW 120
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
V + G+ VP IP P + VTIT +R +E P ++G+QQVYSI+T QV +L G
Sbjct 121 VSAEEGNAVPDIPPAPSEEVTITGMVRSNEAEHKTA-PITQEGYQQVYSIHTEQVGSLIG 179
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA 238
L Y+QL EDQPG L + +P LD G LSYG QWI+FGI+AP+GLGYF ++
Sbjct 180 ADLGQDYIQLSEDQPGVLNAMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFIWS 234
>gi|227504612|ref|ZP_03934661.1| transmembrane protein [Corynebacterium striatum ATCC 6940]
gi|227198822|gb|EEI78870.1| transmembrane protein [Corynebacterium striatum ATCC 6940]
Length=325
Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/235 (47%), Positives = 147/235 (63%), Gaps = 2/235 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ L + VVAF+Y FTVLAPWQLGK+ + N I + + P PL ++
Sbjct 2 LKTFLKPGWVLLLIFVVAFSYFAFTVLAPWQLGKDDQIVERNHLIAEAYEADPRPLNEVV 61
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
+D + D +W R T TG YL D +VL RLR V ++ L PF D G T+LV+RG+
Sbjct 62 -TKDGAIKDDEWSRATLTGHYLADDEVLLRLRPVSSGAVYQSLVPFQTDSGLTMLVNRGW 120
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
+ G+ VP IP P + VTIT +R E + P ++G+QQVYSI+T +VA+LT
Sbjct 121 IAAGEGNTVPEIPPAPTEDVTITGMIRADELQHSSA-PIDQEGYQQVYSIHTEEVASLTD 179
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA 238
+L Y+QL +QPG L L VP LD G LSYG QWI+FGI+AP+GLGYF ++
Sbjct 180 TKLGKDYIQLSPEQPGELTALEVPQLDRGNHLSYGYQWIAFGIMAPLGLGYFVWS 234
>gi|256375020|ref|YP_003098680.1| SURF1 family protein [Actinosynnema mirum DSM 43827]
gi|255919323|gb|ACU34834.1| putative SURF1 family protein [Actinosynnema mirum DSM 43827]
Length=292
Score = 209 bits (533), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/250 (45%), Positives = 151/250 (61%), Gaps = 10/250 (4%)
Query 3 RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL 62
RL FLLRPGWLAL + V F +C +LAPWQ G++ + +N + ++ T PVP +
Sbjct 5 RLRFLLRPGWLALTVAVWVFAGVCIWMLAPWQFGRDDQRVGQNTALSEAMATDPVPFAEV 64
Query 63 LPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRG 122
L D + +WRRV TGQ+L D + +ARLR V+G+ A+EVL PF GP VLVDRG
Sbjct 65 L---DEPNAEHEWRRVVLTGQFLADSEAVARLRTVQGEAAYEVLTPFRTTDGPVVLVDRG 121
Query 123 YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALT 182
YVRP G VP + P + V++TA R EP + +D F+ DG +QVYSINT V +
Sbjct 122 YVRPADGMGVPDLTTPPSERVSVTAWTRAEEPDL--RDGFLEDGERQVYSINTATVGRMV 179
Query 183 GVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIR- 241
G+ + Y QL DQPG L +P ++ GPF SY +QW++FG++A G YF + E +
Sbjct 180 GLDIRPGYFQLDVDQPGLESALPLPRMEAGPFYSYALQWLAFGVMAIGGWLYFTWREAKP 239
Query 242 ----ARRREK 247
R REK
Sbjct 240 GGALTREREK 249
>gi|311741452|ref|ZP_07715276.1| transmembrane protein [Corynebacterium pseudogenitalium ATCC
33035]
gi|311303622|gb|EFQ79701.1| transmembrane protein [Corynebacterium pseudogenitalium ATCC
33035]
Length=335
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/237 (46%), Positives = 149/237 (63%), Gaps = 2/237 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ L L VVAF+YL FTVLAPWQLGK+ N+ I ++ + P P++ L+
Sbjct 2 LKTFLKPGWVLLLLFVVAFSYLAFTVLAPWQLGKDDDIVERNELITHAYEADPQPVEDLV 61
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
+ + D +W R T G+YLP +VL RLR V+ +++ L PF D G T+LV+RG+
Sbjct 62 -DGNGAIKDDEWSRATLHGKYLPQDEVLLRLRPVDSGPSYQSLVPFRTDSGLTILVNRGW 120
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
V+ + VP IP P T+T +R E P ++G+QQVYSI+T Q+A+L
Sbjct 121 VKAGEANAVPDIPDAPSGETTLTGMIRADEAEHQSA-PIKQEGYQQVYSIHTEQIASLID 179
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LA Y+QL DQPG L + +P LD G LSYG QWI+FGI+AP+GLGYF ++EI
Sbjct 180 APLAHDYIQLSADQPGVLNPMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFVWSEI 236
>gi|306834676|ref|ZP_07467758.1| transmembrane protein [Corynebacterium accolens ATCC 49726]
gi|304569441|gb|EFM44924.1| transmembrane protein [Corynebacterium accolens ATCC 49726]
Length=321
Score = 209 bits (533), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 104/235 (45%), Positives = 148/235 (63%), Gaps = 2/235 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ + L VVAF+YL F+VLAPWQLGK+ N+ I ++ + P P+ ++
Sbjct 2 LKTFLKPGWVLMLLFVVAFSYLAFSVLAPWQLGKDDDIVERNENITHAYEADPQPIDQVV 61
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
D + +W R T G YLP+ +VL RLR +++ L PF D G T+L++RG+
Sbjct 62 -DDDGAISGDEWSRTTLKGHYLPEDEVLLRLRPAGSGPSYQSLVPFRTDAGLTMLINRGW 120
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
V + G+ VP IP P + +TIT +R +E + P ++G+QQVYSI+T QV +L G
Sbjct 121 VSAEEGNAVPYIPPAPSEEITITGMVRSNE-AEHKTAPITQEGYQQVYSIHTEQVGSLIG 179
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA 238
L Y+QL EDQPG L + +P LD G LSYG QWI+FGI+AP+GLGYF ++
Sbjct 180 ADLGQDYIQLSEDQPGVLNAMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFIWS 234
>gi|340794051|ref|YP_004759514.1| hypothetical protein CVAR_1087 [Corynebacterium variabile DSM
44702]
gi|340533961|gb|AEK36441.1| hypothetical protein CVAR_1087 [Corynebacterium variabile DSM
44702]
Length=338
Score = 206 bits (525), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/299 (42%), Positives = 171/299 (58%), Gaps = 35/299 (11%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
L PGW+ ++ V F Y+ FTVLAPWQLGKN T N ++ +++ PVP+ ++LP
Sbjct 25 FLTPGWVITTVIAVLFAYIAFTVLAPWQLGKNTDTKEFNGRLEDAMEHDPVPVSSVLPAD 84
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP 126
D++W RV G++LP +VL R R V G AF+VL PF D G TVLV+RG++ P
Sbjct 85 GRPVDDSEWTRVELQGRFLPSSEVLLRNRPVSGSPAFQVLTPFQTDDGLTVLVNRGWIEP 144
Query 127 Q-VGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQ 185
G+ VP + P ++T +R SE +V P G QVY +NTGQ++ LT ++
Sbjct 145 TGGGAGVPEMTDAPETETSVTGYVRKSE-AVPDSAPITDQGRLQVYGMNTGQISRLTDLE 203
Query 186 LAGSYLQLIEDQPG-----GLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI 240
LAG+Y+QL E+ GL + +P LD GP+LSYGIQWI+FGI+ P+GLGYF +AEI
Sbjct 204 LAGNYVQLDEESTAGRAGEGLNEIPLPKLDSGPYLSYGIQWIAFGIMVPLGLGYFLWAEI 263
Query 241 RARRR-------EKAGSPPPDKPMTV---------------------EQKLADRYGRRR 271
R RRR +AG+ +P+ E+KLADRYG R
Sbjct 264 RERRRQREEIAASEAGTQDAPEPVATPEPAPVPEEVVPEKDAATVSRERKLADRYGHSR 322
>gi|227548840|ref|ZP_03978889.1| transmembrane protein [Corynebacterium lipophiloflavum DSM 44291]
gi|227079061|gb|EEI17024.1| transmembrane protein [Corynebacterium lipophiloflavum DSM 44291]
Length=285
Score = 205 bits (521), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 114/243 (47%), Positives = 149/243 (62%), Gaps = 5/243 (2%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
L PGW A+++ F+Y FT LAPWQLGKN + N+ I + D PVP + P
Sbjct 5 FLTPGWAIAAILIALFSYFAFTFLAPWQLGKNERLVERNEHIVEAFDNDPVPYSAVAPDG 64
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYV-R 125
+ AP +W RVT TG+Y+P+ +VL RLR V+ AF+VL PF +D GPT+LV+RG+V
Sbjct 65 EV-APADEWSRVTMTGRYVPEDEVLLRLRPVDKTPAFQVLTPFRIDNGPTMLVNRGWVPA 123
Query 126 PQVGSHVPPIPRLPVQTVTITARLR-DSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGV 184
G+ VPPI P VTIT LR D P P + G VYSI++ Q + +TG
Sbjct 124 TDGGTTVPPIDPAPTSQVTITGLLRLDEGPHRLA--PLLDQGHAMVYSISSAQASEITGA 181
Query 185 QLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARR 244
LA SYLQL + G L + +P L+ G LSYG+QWI+FGI+AP GL YF +AE+R RR
Sbjct 182 DLAPSYLQLSPGESGVLEPIPLPMLETGNHLSYGLQWIAFGIMAPAGLIYFLWAEVRERR 241
Query 245 REK 247
R K
Sbjct 242 RFK 244
>gi|317508018|ref|ZP_07965708.1| hypothetical protein HMPREF9336_02080 [Segniliparus rugosus ATCC
BAA-974]
gi|316253680|gb|EFV13060.1| hypothetical protein HMPREF9336_02080 [Segniliparus rugosus ATCC
BAA-974]
Length=295
Score = 204 bits (518), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 118/252 (47%), Positives = 149/252 (60%), Gaps = 8/252 (3%)
Query 2 PRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKT 61
PR LRPGW+ALA VV F LCF V APWQLGKN +T+ N ++ +L+ PP PL
Sbjct 6 PRWRVFLRPGWIALAAGVVLFAVLCFWVFAPWQLGKNGRTAERNDRVSRALEAPPAPLAE 65
Query 62 LLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGD-QAFEVLAPFVVDGGPTVLVD 120
LL + P ++WR V G Y D QVL R R V G Q +VL P D G TVLVD
Sbjct 66 LL--RTGVGPQSEWRAVVVVGVYESDKQVLLRHRPVHGTAQGPQVLTPLRFDDGRTVLVD 123
Query 121 RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVR-DGFQQVYSINTGQVA 179
RGY+ PQ + PP P V + ARLR E + AG+ + DG QQ+ +I+ +A
Sbjct 124 RGYL-PQGATAAPPAP---TGDVALKARLRLLERTPAGRPAIMTIDGSQQLEAIDASAIA 179
Query 180 ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE 239
L G L +YLQL QPG LG L P LDPGP+LSYG+QW++FG++A LGYF Y+E
Sbjct 180 PLVGAPLEPAYLQLDPGQPGALGALAEPDLDPGPYLSYGLQWLAFGVIALAALGYFGYSE 239
Query 240 IRARRREKAGSP 251
+R +A P
Sbjct 240 LRPTEGHEAEEP 251
>gi|62391082|ref|YP_226484.1| hypothetical protein cg2460 [Corynebacterium glutamicum ATCC
13032]
gi|41326421|emb|CAF20583.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032]
Length=333
Score = 202 bits (513), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 107/242 (45%), Positives = 148/242 (62%), Gaps = 2/242 (0%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
L PGW+ AL++V+F+Y ++LAPWQL K+ N+QI + + VP L
Sbjct 36 FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS 95
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP 126
++ RV+ TGQYLPD +VL RLR V+ AF+ L PF ++ G VLV+RGY
Sbjct 96 GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS 155
Query 127 QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL 186
+ G+ VP I P VTIT R +E + G P G+ QVY INT Q++ +TG+ L
Sbjct 156 E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGINTEQISDVTGLDL 213
Query 187 AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE 246
Y+Q+ E +PG L + +P +D G LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct 214 GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD 273
Query 247 KA 248
KA
Sbjct 274 KA 275
>gi|23308914|ref|NP_601443.2| hypothetical protein NCgl2160 [Corynebacterium glutamicum ATCC
13032]
gi|21325012|dbj|BAB99634.1| Uncharacterized ACR [Corynebacterium glutamicum ATCC 13032]
Length=318
Score = 201 bits (512), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 107/242 (45%), Positives = 148/242 (62%), Gaps = 2/242 (0%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
L PGW+ AL++V+F+Y ++LAPWQL K+ N+QI + + VP L
Sbjct 21 FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS 80
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP 126
++ RV+ TGQYLPD +VL RLR V+ AF+ L PF ++ G VLV+RGY
Sbjct 81 GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS 140
Query 127 QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL 186
+ G+ VP I P VTIT R +E + G P G+ QVY INT Q++ +TG+ L
Sbjct 141 E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGINTEQISDVTGLDL 198
Query 187 AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE 246
Y+Q+ E +PG L + +P +D G LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct 199 GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD 258
Query 247 KA 248
KA
Sbjct 259 KA 260
>gi|227543048|ref|ZP_03973097.1| conserved transmembrane protein [Corynebacterium glucuronolyticum
ATCC 51866]
gi|227181270|gb|EEI62242.1| conserved transmembrane protein [Corynebacterium glucuronolyticum
ATCC 51866]
Length=295
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/243 (45%), Positives = 144/243 (60%), Gaps = 2/243 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ A+++V F+Y TVLAPWQLGK+ S +N QIR +L T PVP+ +
Sbjct 7 LRTFLKPGWVITAVLIVVFSYFAITVLAPWQLGKHEVKSEQNTQIRTALRTDPVPVDEIF 66
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
A +A WR+V G Y P +V+ R+R V G+ F+VL F G L++RGY
Sbjct 67 VNGALPADNA-WRQVELVGTYSPSDEVILRMRSVAGNPVFQVLTVFTTTSGDAYLINRGY 125
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
V Q S VP IP P TVTIT E +G+ P D Q V IN Q+++LTG
Sbjct 126 VPQQKDSGVPEIPAAPTDTVTITGNALPGEAD-SGRPPHADDSHQYVLDINLPQISSLTG 184
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRAR 243
LA Y+QL + QPG L + +P LD GP+LSYG+QWI+ GI API L YF E++ R
Sbjct 185 TSLADGYIQLADKQPGVLNAIPLPKLDGGPYLSYGLQWIAMGIGAPIALLYFIRMELKER 244
Query 244 RRE 246
+R+
Sbjct 245 KRD 247
>gi|227488436|ref|ZP_03918752.1| conserved transmembrane protein [Corynebacterium glucuronolyticum
ATCC 51867]
gi|227091650|gb|EEI26962.1| conserved transmembrane protein [Corynebacterium glucuronolyticum
ATCC 51867]
Length=295
Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 108/243 (45%), Positives = 144/243 (60%), Gaps = 2/243 (0%)
Query 4 LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL 63
L L+PGW+ A+++V F+Y TVLAPWQLGK+ S +N QIR +L T PVP+ +
Sbjct 7 LRTFLKPGWVITAVLIVVFSYFAITVLAPWQLGKHEVKSEQNTQIRTALRTDPVPVDEIF 66
Query 64 PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY 123
A +A WR+V G Y P +V+ R+R V G+ F+VL F G L++RGY
Sbjct 67 VNGALPADNA-WRQVELVGTYSPSDEVILRMRSVAGNPVFQVLTVFTTTSGDAYLINRGY 125
Query 124 VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG 183
V Q S VP IP P TVTIT E +G+ P D Q V IN Q+++LTG
Sbjct 126 VPQQKDSGVPEIPAAPTDTVTITGNALPGEAD-SGRPPHADDSHQYVLDINLPQISSLTG 184
Query 184 VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRAR 243
LA Y+QL + QPG L + +P LD GP+LSYG+QWI+ GI API L YF E++ R
Sbjct 185 TSLADGYIQLADKQPGVLNAIPLPKLDGGPYLSYGLQWIAMGIGAPIALLYFIRMELKER 244
Query 244 RRE 246
+R+
Sbjct 245 KRD 247
>gi|344044320|gb|EGV39998.1| hypothetical protein CgS9114_10237 [Corynebacterium glutamicum
S9114]
Length=333
Score = 199 bits (506), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/242 (44%), Positives = 148/242 (62%), Gaps = 2/242 (0%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
L PGW+ AL++V+F+Y ++LAPWQL K+ N+QI + + VP L
Sbjct 36 FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS 95
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP 126
++ RV+ TGQYLPD +VL RLR V+ AF+ L PF ++ G VLV+RGY
Sbjct 96 GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS 155
Query 127 QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL 186
+ G+ VP I P VTIT R +E + G P G+ QVY I+T Q++ +TG+ L
Sbjct 156 E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGISTEQISDVTGLDL 213
Query 187 AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE 246
Y+Q+ E +PG L + +P +D G LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct 214 GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD 273
Query 247 KA 248
KA
Sbjct 274 KA 275
>gi|145296199|ref|YP_001139020.1| hypothetical protein cgR_2117 [Corynebacterium glutamicum R]
gi|140846119|dbj|BAF55118.1| hypothetical protein [Corynebacterium glutamicum R]
Length=333
Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 106/242 (44%), Positives = 148/242 (62%), Gaps = 2/242 (0%)
Query 7 LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ 66
L PGW+ AL++V+F+Y ++LAPWQL K+ N+QI + + VP L
Sbjct 36 FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS 95
Query 67 DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP 126
++ RV+ TGQYLPD +VL RLR V+ AF+ L PF ++ G VLV+RGY
Sbjct 96 GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS 155
Query 127 QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL 186
+ G+ VP I P VTIT R +E + G P G+ QVY I+T Q++ +TG+ L
Sbjct 156 E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGISTEQISDVTGLDL 213
Query 187 AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE 246
Y+Q+ E +PG L + +P +D G LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct 214 GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD 273
Query 247 KA 248
KA
Sbjct 274 KA 275
>gi|300783094|ref|YP_003763385.1| hypothetical protein AMED_1168 [Amycolatopsis mediterranei U32]
gi|299792608|gb|ADJ42983.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=276
Score = 197 bits (502), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/242 (45%), Positives = 138/242 (58%), Gaps = 3/242 (1%)
Query 3 RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL 62
RL FLLRPGWLAL VV F CFT+L+PWQ +NA+ ++N + S PVPL L
Sbjct 2 RLRFLLRPGWLALTAVVFTFAICCFTLLSPWQFSRNAEREQQNSALETSFTAAPVPLAQL 61
Query 63 LPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRG 122
LP +W VT TGQYL D +V+ARLR V+G+ A+EVL P G VL+DRG
Sbjct 62 LPPGSVPGRYTEWHLVTVTGQYLADKEVVARLRTVQGEGAYEVLTPMRTTDGTVVLIDRG 121
Query 123 YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFV---RDGFQQVYSINTGQVA 179
YVR S P P TV +TAR+R E +D F G Q Y +++ VA
Sbjct 122 YVRLDSKSGALPFAPPPAGTVQVTARVRADETDPKNRDAFADASTGGRLQSYVVDSRVVA 181
Query 180 ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE 239
+G+ + Y QL QPG LG L +P D GPFLSY +QWI+FG +A +G YF E
Sbjct 182 RASGLDIRPGYFQLDVGQPGVLGALPLPQTDSGPFLSYALQWIAFGAMALLGWLYFTVRE 241
Query 240 IR 241
++
Sbjct 242 LK 243
>gi|300858919|ref|YP_003783902.1| hypothetical protein cpfrc_01502 [Corynebacterium pseudotuberculosis
FRC41]
gi|300686373|gb|ADK29295.1| hypothetical protein cpfrc_01502 [Corynebacterium pseudotuberculosis
FRC41]
gi|302206618|gb|ADL10960.1| Hypothetical protein CpC231_1494 [Corynebacterium pseudotuberculosis
C231]
gi|302331169|gb|ADL21363.1| Hypothetical protein Cp1002_1492 [Corynebacterium pseudotuberculosis
1002]
gi|308276862|gb|ADO26761.1| Putative membrane protein [Corynebacterium pseudotuberculosis
I19]
gi|341825305|gb|AEK92826.1| Hypothetical protein CpPAT10_1494 [Corynebacterium pseudotuberculosis
PAT10]
Length=314
Score = 197 bits (500), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 100/242 (42%), Positives = 139/242 (58%), Gaps = 2/242 (0%)
Query 6 FLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQ 65
L+PGW+ A++ +AF+Y TVL+PWQL K+ N I + + P P+ L
Sbjct 13 IFLKPGWVITAVLAIAFSYFAITVLSPWQLNKDHDIVARNNHIEQAFENDPSPITDLFDG 72
Query 66 QDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVR 125
+ D +W R T TG YLPD +VL RLR V+G A++ L PF + G T+LV+RG++
Sbjct 73 SGNIKGDNEWMRATLTGHYLPDKEVLLRLRPVDGAPAYQSLVPFQSENGQTLLVNRGFIP 132
Query 126 PQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQ 185
+ G P + + P VTI R +E + P DG+ QV I+T Q++ L
Sbjct 133 LEAGK-PPRLDKAPSGKVTIVGHARHNE-GIPATPPLTADGYTQVNGISTEQISTLIHAT 190
Query 186 LAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRR 245
L YLQL DQPG + + +P LD G LSYG QWI+FGI+AP+ L YF +AEI+ RRR
Sbjct 191 LGVDYLQLASDQPGEVHAMPIPKLDRGNHLSYGFQWIAFGIMAPLALIYFIWAEIKERRR 250
Query 246 EK 247
K
Sbjct 251 AK 252
Lambda K H
0.321 0.140 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 419877318148
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40