BLASTP 2.2.25+


Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.



Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           15,229,318 sequences; 5,219,829,388 total letters



Query= Rv2235

Length=271
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|15609372|ref|NP_216751.1|  transmembrane protein [Mycobacteriu...   539    2e-151
gi|289754343|ref|ZP_06513721.1|  transmembrane protein [Mycobacte...   538    3e-151
gi|118617015|ref|YP_905347.1|  transmembrane protein [Mycobacteri...   438    4e-121
gi|183983300|ref|YP_001851591.1|  transmembrane protein [Mycobact...   438    5e-121
gi|240172448|ref|ZP_04751107.1|  transmembrane protein [Mycobacte...   436    2e-120
gi|296166125|ref|ZP_06848570.1|  transmembrane protein [Mycobacte...   425    3e-117
gi|289443745|ref|ZP_06433489.1|  transmembrane protein [Mycobacte...   424    9e-117
gi|254821904|ref|ZP_05226905.1|  hypothetical protein MintA_18362...   410    1e-112
gi|15827867|ref|NP_302130.1|  hypothetical protein ML1644 [Mycoba...   406    2e-111
gi|342857256|ref|ZP_08713912.1|  hypothetical protein MCOL_00220 ...   399    3e-109
gi|108800314|ref|YP_640511.1|  hypothetical protein Mmcs_3348 [My...   390    1e-106
gi|120404591|ref|YP_954420.1|  putative transmembrane protein [My...   388    5e-106
gi|118464619|ref|YP_881413.1|  hypothetical protein MAV_2204 [Myc...   383    2e-104
gi|41408084|ref|NP_960920.1|  hypothetical protein MAP1986 [Mycob...   376    1e-102
gi|118470407|ref|YP_888587.1|  hypothetical protein MSMEG_4311 [M...   374    1e-101
gi|333990301|ref|YP_004522915.1|  transmembrane protein [Mycobact...   358    4e-97 
gi|145223474|ref|YP_001134152.1|  hypothetical protein Mflv_2887 ...   353    1e-95 
gi|315443835|ref|YP_004076714.1|  hypothetical protein Mspyr1_223...   352    3e-95 
gi|169628987|ref|YP_001702636.1|  hypothetical protein MAB_1899c ...   322    5e-86 
gi|226360326|ref|YP_002778104.1|  hypothetical protein ROP_09120 ...   270    1e-70 
gi|333918909|ref|YP_004492490.1|  transmembrane protein [Amycolic...   267    1e-69 
gi|325677010|ref|ZP_08156681.1|  transmembrane protein [Rhodococc...   266    2e-69 
gi|111018200|ref|YP_701172.1|  hypothetical protein RHA1_ro01187 ...   264    9e-69 
gi|312140243|ref|YP_004007579.1|  integral membrane protein [Rhod...   261    6e-68 
gi|54023598|ref|YP_117840.1|  hypothetical protein nfa16300 [Noca...   257    1e-66 
gi|229490254|ref|ZP_04384096.1|  conserved hypothetical protein [...   253    3e-65 
gi|226307151|ref|YP_002767111.1|  hypothetical protein RER_36640 ...   252    3e-65 
gi|296140408|ref|YP_003647651.1|  transmembrane protein [Tsukamur...   239    3e-61 
gi|326382468|ref|ZP_08204159.1|  hypothetical protein SCNU_06000 ...   235    5e-60 
gi|262202992|ref|YP_003274200.1|  hypothetical protein Gbro_3101 ...   224    1e-56 
gi|259507756|ref|ZP_05750656.1|  membrane protein [Corynebacteriu...   214    1e-53 
gi|25028695|ref|NP_738749.1|  hypothetical protein CE2139 [Coryne...   214    1e-53 
gi|134098163|ref|YP_001103824.1|  hypothetical protein SACE_1577 ...   214    1e-53 
gi|255324870|ref|ZP_05365979.1|  conserved hypothetical protein [...   211    9e-53 
gi|227503206|ref|ZP_03933255.1|  transmembrane protein [Corynebac...   211    1e-52 
gi|227504612|ref|ZP_03934661.1|  transmembrane protein [Corynebac...   210    2e-52 
gi|256375020|ref|YP_003098680.1|  SURF1 family protein [Actinosyn...   209    2e-52 
gi|311741452|ref|ZP_07715276.1|  transmembrane protein [Corynebac...   209    3e-52 
gi|306834676|ref|ZP_07467758.1|  transmembrane protein [Corynebac...   209    3e-52 
gi|340794051|ref|YP_004759514.1|  hypothetical protein CVAR_1087 ...   206    2e-51 
gi|227548840|ref|ZP_03978889.1|  transmembrane protein [Corynebac...   205    7e-51 
gi|317508018|ref|ZP_07965708.1|  hypothetical protein HMPREF9336_...   204    1e-50 
gi|62391082|ref|YP_226484.1|  hypothetical protein cg2460 [Coryne...   202    6e-50 
gi|23308914|ref|NP_601443.2|  hypothetical protein NCgl2160 [Cory...   201    7e-50 
gi|227543048|ref|ZP_03973097.1|  conserved transmembrane protein ...   201    1e-49 
gi|227488436|ref|ZP_03918752.1|  conserved transmembrane protein ...   201    1e-49 
gi|344044320|gb|EGV39998.1|  hypothetical protein CgS9114_10237 [...   199    3e-49 
gi|145296199|ref|YP_001139020.1|  hypothetical protein cgR_2117 [...   199    4e-49 
gi|300783094|ref|YP_003763385.1|  hypothetical protein AMED_1168 ...   197    1e-48 
gi|300858919|ref|YP_003783902.1|  hypothetical protein cpfrc_0150...   197    2e-48 


>gi|15609372|ref|NP_216751.1| transmembrane protein [Mycobacterium tuberculosis H37Rv]
 gi|15841727|ref|NP_336764.1| hypothetical protein MT2294 [Mycobacterium tuberculosis CDC1551]
 gi|31793415|ref|NP_855908.1| transmembrane protein [Mycobacterium bovis AF2122/97]
 78 more sequence titles
 Length=271

 Score =  539 bits (1388),  Expect = 2e-151, Method: Compositional matrix adjust.
 Identities = 271/271 (100%), Positives = 271/271 (100%), Gaps = 0/271 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK
Sbjct  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD
Sbjct  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA
Sbjct  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI
Sbjct  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240

Query  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
            RARRREKAGSPPPDKPMTVEQKLADRYGRRR
Sbjct  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271


>gi|289754343|ref|ZP_06513721.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
 gi|289694930|gb|EFD62359.1| transmembrane protein [Mycobacterium tuberculosis EAS054]
Length=271

 Score =  538 bits (1386),  Expect = 3e-151, Method: Compositional matrix adjust.
 Identities = 270/271 (99%), Positives = 271/271 (100%), Gaps = 0/271 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK
Sbjct  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD
Sbjct  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPS+AGKDPFVRDGFQQVYSINTGQVAA
Sbjct  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSMAGKDPFVRDGFQQVYSINTGQVAA  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI
Sbjct  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240

Query  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
            RARRREKAGSPPPDKPMTVEQKLADRYGRRR
Sbjct  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271


>gi|118617015|ref|YP_905347.1| transmembrane protein [Mycobacterium ulcerans Agy99]
 gi|118569125|gb|ABL03876.1| conserved transmembrane protein [Mycobacterium ulcerans Agy99]
Length=274

 Score =  438 bits (1127),  Expect = 4e-121, Method: Compositional matrix adjust.
 Identities = 217/274 (80%), Positives = 243/274 (89%), Gaps = 3/274 (1%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RLAFLLRPGW+ALALVV+AFTYLCFTVLAPWQLGKN KTSREN+QI ++L +P VP+K
Sbjct  1    MRRLAFLLRPGWIALALVVIAFTYLCFTVLAPWQLGKNTKTSRENRQINHALSSPAVPVK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLLPQQDSSAP+AQWR VTATG YL DVQVLARLRVV+GDQAFEVL PF VDGGPTVLVD
Sbjct  61   TLLPQQDSSAPEAQWRSVTATGHYLSDVQVLARLRVVDGDQAFEVLTPFAVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP+ GSHVPPIPR P QT+TITARLRD EP++AGK+PF RDGF+QVYSIN  Q++ 
Sbjct  121  RGYVRPEPGSHVPPIPRAPDQTLTITARLRDFEPTMAGKEPFSRDGFEQVYSINAKQIST  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGV LAGSYLQL+E+QPGGLG++G+PHLD GPFLSYGIQWI+FGILAPIGLGYFAYAE+
Sbjct  181  LTGVPLAGSYLQLVENQPGGLGLIGLPHLDSGPFLSYGIQWIAFGILAPIGLGYFAYAEL  240

Query  241  ---RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
               R   R +  +PP D PMTVEQKLADRYGRRR
Sbjct  241  RARRRETRAREDAPPADTPMTVEQKLADRYGRRR  274


>gi|183983300|ref|YP_001851591.1| transmembrane protein [Mycobacterium marinum M]
 gi|183176626|gb|ACC41736.1| conserved transmembrane protein [Mycobacterium marinum M]
Length=274

 Score =  438 bits (1126),  Expect = 5e-121, Method: Compositional matrix adjust.
 Identities = 217/274 (80%), Positives = 243/274 (89%), Gaps = 3/274 (1%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RLAFLLRPGW+ALALVV+AFTYLCFTVLAPWQLGKN KTSREN+QI ++L +P VP+K
Sbjct  1    MRRLAFLLRPGWIALALVVIAFTYLCFTVLAPWQLGKNTKTSRENRQINHALTSPAVPVK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLLPQQDSSAP+AQWR VTATG YL DVQVLARLRVV+GDQAFEVL PF VDGGPTVLVD
Sbjct  61   TLLPQQDSSAPEAQWRSVTATGHYLSDVQVLARLRVVDGDQAFEVLTPFAVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP+ GSHVPPIPR P QT+TITARLRD EP++AGK+PF RDGF+QVYSIN  Q++ 
Sbjct  121  RGYVRPEPGSHVPPIPRAPDQTLTITARLRDFEPTMAGKEPFSRDGFEQVYSINAKQIST  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGV LAGSYLQL+E+QPGGLG++G+PHLD GPFLSYGIQWI+FGILAPIGLGYFAYAE+
Sbjct  181  LTGVPLAGSYLQLVENQPGGLGLIGLPHLDSGPFLSYGIQWIAFGILAPIGLGYFAYAEL  240

Query  241  ---RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
               R   R +  +PP D PMTVEQKLADRYGRRR
Sbjct  241  RARRRETRAREDAPPADTPMTVEQKLADRYGRRR  274


>gi|240172448|ref|ZP_04751107.1| transmembrane protein [Mycobacterium kansasii ATCC 12478]
Length=275

 Score =  436 bits (1121),  Expect = 2e-120, Method: Compositional matrix adjust.
 Identities = 228/271 (85%), Positives = 246/271 (91%), Gaps = 0/271 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            +P LAFLLRPGW+ALALVV+AFTYLCFTVLAPWQLGKN KTSREN+QI YSL TPPVPL+
Sbjct  5    IPSLAFLLRPGWIALALVVIAFTYLCFTVLAPWQLGKNTKTSRENRQIDYSLHTPPVPLQ  64

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLLPQQDSSAP AQWRRVTATG YLPD QVLARLRVV+G+QAFEVLAPF VD GPTVLVD
Sbjct  65   TLLPQQDSSAPGAQWRRVTATGHYLPDAQVLARLRVVDGEQAFEVLAPFAVDDGPTVLVD  124

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP+ GSHVPPIPR P QTVTITARLRDSEP+  GK+PF RDGF QVYSI+T QV+ 
Sbjct  125  RGYVRPEPGSHVPPIPRPPEQTVTITARLRDSEPTAVGKEPFTRDGFPQVYSISTAQVST  184

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGV LAGSYLQLIEDQPGGLG +G+PHLD GPFLSYGIQWI+FGILAPIGLGYFAYAE+
Sbjct  185  LTGVPLAGSYLQLIEDQPGGLGPIGIPHLDAGPFLSYGIQWITFGILAPIGLGYFAYAEL  244

Query  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
            RARRRE+   PP D+PMTVEQKLADRYGRRR
Sbjct  245  RARRRERREPPPADEPMTVEQKLADRYGRRR  275


>gi|296166125|ref|ZP_06848570.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
 gi|295898534|gb|EFG78095.1| transmembrane protein [Mycobacterium parascrofulaceum ATCC BAA-614]
Length=277

 Score =  425 bits (1093),  Expect = 3e-117, Method: Compositional matrix adjust.
 Identities = 222/277 (81%), Positives = 236/277 (86%), Gaps = 6/277 (2%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RLAFLLRPGW+AL LVVVAFTYLCFTVLAPWQLGK+ +TSREN+QI YSL+T PVPLK
Sbjct  1    MRRLAFLLRPGWIALGLVVVAFTYLCFTVLAPWQLGKHNRTSRENRQIEYSLNTAPVPLK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLL QQDSSAPDAQWRRVTATG YLPDVQVLARLRV+EG  AFEVLAPFVVD GPTVLVD
Sbjct  61   TLLLQQDSSAPDAQWRRVTATGHYLPDVQVLARLRVIEGKPAFEVLAPFVVDAGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  GSHVPPIPR P  TVTITARLRDS+   AGKDPF +DG QQVYSI+T QVAA
Sbjct  121  RGYVRPDQGSHVPPIPRPPGGTVTITARLRDSQAVAAGKDPFTQDGVQQVYSISTAQVAA  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LT V LAGSYLQL+EDQPGGLGV+GVP LD GPFLSYGIQWISFGI+AP+GLGYF Y+EI
Sbjct  181  LTKVPLAGSYLQLVEDQPGGLGVIGVPQLDAGPFLSYGIQWISFGIVAPLGLGYFVYSEI  240

Query  241  RARRREK------AGSPPPDKPMTVEQKLADRYGRRR  271
            RARRREK      A    P  P TVE KLADRYGR R
Sbjct  241  RARRREKERQAETAAPEAPAPPKTVEAKLADRYGRHR  277


>gi|289443745|ref|ZP_06433489.1| transmembrane protein [Mycobacterium tuberculosis T46]
 gi|289416664|gb|EFD13904.1| transmembrane protein [Mycobacterium tuberculosis T46]
Length=254

 Score =  424 bits (1089),  Expect = 9e-117, Method: Compositional matrix adjust.
 Identities = 217/232 (94%), Positives = 220/232 (95%), Gaps = 2/232 (0%)

Query  42   SRENQQIRYSLDTPP--VPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEG  99
             R  +  R  + + P   PLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEG
Sbjct  23   KRHERTSRSGIPSTPRRFPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEG  82

Query  100  DQAFEVLAPFVVDGGPTVLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGK  159
            DQAFEVLAPFVVDGGPTVLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGK
Sbjct  83   DQAFEVLAPFVVDGGPTVLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGK  142

Query  160  DPFVRDGFQQVYSINTGQVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGI  219
            DPFVRDGFQQVYSINTGQVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGI
Sbjct  143  DPFVRDGFQQVYSINTGQVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGI  202

Query  220  QWISFGILAPIGLGYFAYAEIRARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
            QWISFGILAPIGLGYFAYAEIRARRREKAGSPPPDKPMTVEQKLADRYGRRR
Sbjct  203  QWISFGILAPIGLGYFAYAEIRARRREKAGSPPPDKPMTVEQKLADRYGRRR  254


>gi|254821904|ref|ZP_05226905.1| hypothetical protein MintA_18362 [Mycobacterium intracellulare 
ATCC 13950]
Length=276

 Score =  410 bits (1053),  Expect = 1e-112, Method: Compositional matrix adjust.
 Identities = 212/276 (77%), Positives = 236/276 (86%), Gaps = 5/276 (1%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RLAF+LRPGW+ LALVV+AF YLCFTVLAPWQLGK+ +TSREN QI +SL+T PVP+K
Sbjct  1    MRRLAFVLRPGWIVLALVVIAFAYLCFTVLAPWQLGKHNRTSRENHQIEHSLNTAPVPVK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLLPQQ+S AP  QWR+VTATG YLPDVQVLARLRV++   AFEVLAPFVVDGGPTVLVD
Sbjct  61   TLLPQQNSVAPGDQWRQVTATGHYLPDVQVLARLRVIDSKPAFEVLAPFVVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  GS VPPIPR P  TVT+TARLR+SEP VAGKDPFV DG QQVYSI+TGQ+A 
Sbjct  121  RGYVRPLEGSRVPPIPRPPADTVTVTARLRNSEPPVAGKDPFVGDGVQQVYSIDTGQIAV  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LT V LAGSYLQL++ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIGLGYFAY+EI
Sbjct  181  LTKVPLAGSYLQLVDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGLGYFAYSEI  240

Query  241  RARRREKAG-----SPPPDKPMTVEQKLADRYGRRR  271
            RARR+EK       +P P+ P TVE KLADRYGRRR
Sbjct  241  RARRQEKQSPAAALAPAPEAPPTVEDKLADRYGRRR  276


>gi|15827867|ref|NP_302130.1| hypothetical protein ML1644 [Mycobacterium leprae TN]
 gi|221230344|ref|YP_002503760.1| hypothetical protein MLBr_01644 [Mycobacterium leprae Br4923]
 gi|3150235|emb|CAA19213.1| hypothetical protein MLCB1243.32c [Mycobacterium leprae]
 gi|13093419|emb|CAC30595.1| conserved membrane protein [Mycobacterium leprae]
 gi|219933451|emb|CAR71739.1| conserved membrane protein [Mycobacterium leprae Br4923]
Length=270

 Score =  406 bits (1043),  Expect = 2e-111, Method: Compositional matrix adjust.
 Identities = 201/271 (75%), Positives = 223/271 (83%), Gaps = 1/271 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M  LA LLRPGW+AL LVV AFTYLCF VLAPWQLGKN + SREN QI YSL+TPPVP+K
Sbjct  1    MRHLALLLRPGWIALTLVVTAFTYLCFMVLAPWQLGKNTRMSRENNQIEYSLNTPPVPVK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLL  QD S   +QWR+VTATG+YLPDVQVLARLRVV+  QAFEVLAPFVVD GPTVLVD
Sbjct  61   TLLSHQDLSTSKSQWRQVTATGRYLPDVQVLARLRVVDSGQAFEVLAPFVVDDGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP+ GSHVPPIPR P + V+ITARLRDSEP +  K+PF RDG QQVYSIN  QVA 
Sbjct  121  RGYVRPEPGSHVPPIPRPPNEAVSITARLRDSEPVMKDKEPFSRDGVQQVYSINIEQVAR  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LT + LAGSYLQL+++QPGGLGV+ +PHLD GPFLSYGIQWISFGI+APIGLGY AYAEI
Sbjct  181  LTKIPLAGSYLQLVDNQPGGLGVIDIPHLDAGPFLSYGIQWISFGIIAPIGLGYLAYAEI  240

Query  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
            R  R+EK    P   PM VE+KLADRYG  R
Sbjct  241  RTHRQEKLAK-PSQAPMAVEEKLADRYGHPR  270


>gi|342857256|ref|ZP_08713912.1| hypothetical protein MCOL_00220 [Mycobacterium colombiense CECT 
3035]
 gi|342134589|gb|EGT87755.1| hypothetical protein MCOL_00220 [Mycobacterium colombiense CECT 
3035]
Length=280

 Score =  399 bits (1024),  Expect = 3e-109, Method: Compositional matrix adjust.
 Identities = 209/280 (75%), Positives = 232/280 (83%), Gaps = 9/280 (3%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL F LRPGW+ LALVVVAF YLCFTVLAPWQLGK+++TS+EN QI  SL+T PVPLK
Sbjct  1    MRRLPFALRPGWIVLALVVVAFAYLCFTVLAPWQLGKHSRTSQENHQIESSLNTAPVPLK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
             LLPQ++S+APDAQWR+VTATG YLPDVQVLARLRV++   AFEVL PFVVDGGPTVLVD
Sbjct  61   MLLPQRNSAAPDAQWRQVTATGHYLPDVQVLARLRVIDSKPAFEVLVPFVVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  GSHVPPIPR P QTVTITARLR+SE +   KDPFV DG QQVYSI+T QVA 
Sbjct  121  RGYVRPLEGSHVPPIPRPPTQTVTITARLRNSETAAVNKDPFVGDGVQQVYSIDTEQVAV  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LT V LAGSYLQLI+ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIGLGYFAY+EI
Sbjct  181  LTKVPLAGSYLQLIDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGLGYFAYSEI  240

Query  241  RARRREKAGSP---------PPDKPMTVEQKLADRYGRRR  271
            RARR+E+   P          P+ P +VE KLADRYGRRR
Sbjct  241  RARRQEQQQRPAAEVAPTPEAPEAPQSVEAKLADRYGRRR  280


>gi|108800314|ref|YP_640511.1| hypothetical protein Mmcs_3348 [Mycobacterium sp. MCS]
 gi|119869442|ref|YP_939394.1| hypothetical protein Mkms_3410 [Mycobacterium sp. KMS]
 gi|126435937|ref|YP_001071628.1| hypothetical protein Mjls_3359 [Mycobacterium sp. JLS]
 gi|108770733|gb|ABG09455.1| putative conserved transmembrane protein [Mycobacterium sp. MCS]
 gi|119695531|gb|ABL92604.1| putative conserved transmembrane protein [Mycobacterium sp. KMS]
 gi|126235737|gb|ABN99137.1| putative conserved transmembrane protein [Mycobacterium sp. JLS]
Length=270

 Score =  390 bits (1002),  Expect = 1e-106, Method: Compositional matrix adjust.
 Identities = 194/271 (72%), Positives = 224/271 (83%), Gaps = 1/271 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M R AFLLRP WLAL +VV+AF YLCFTVLAPWQLGKN  TSREN QI  S+   PVP+ 
Sbjct  1    MKRWAFLLRPAWLALFVVVLAFAYLCFTVLAPWQLGKNTTTSRENDQIARSVTAEPVPVT  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            ++LP+QDS+APD QW+RVTATG+YLPD QVLARLRV++GD A+EVL PF VDGGPTVLVD
Sbjct  61   SVLPRQDSAAPDEQWQRVTATGRYLPDAQVLARLRVIDGDPAYEVLVPFAVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYV P+ G+ VPPI   P +TVTITARLRD+EP  AGK+P   +G  QVY+IN GQ++A
Sbjct  121  RGYVTPEQGTEVPPIGPAPTETVTITARLRDAEPVPAGKEPLRENGTVQVYAINPGQISA  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGV LAGSYLQL+EDQPGGLGV+G+PHLD GPFLSYGIQWI+FGI+APIGLGYF YAE+
Sbjct  181  LTGVPLAGSYLQLVEDQPGGLGVIGLPHLDAGPFLSYGIQWIAFGIIAPIGLGYFIYAEV  240

Query  241  RARRREKAGSPPPDKPMTVEQKLADRYGRRR  271
            R RRR+KA +     P T E KLADRYGRRR
Sbjct  241  RQRRRDKAAA-DSTAPATPEDKLADRYGRRR  270


>gi|120404591|ref|YP_954420.1| putative transmembrane protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957409|gb|ABM14414.1| putative conserved transmembrane protein [Mycobacterium vanbaalenii 
PYR-1]
Length=280

 Score =  388 bits (996),  Expect = 5e-106, Method: Compositional matrix adjust.
 Identities = 194/280 (70%), Positives = 223/280 (80%), Gaps = 9/280 (3%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M R AFLLRP WLAL +VV+AF YLCFTVLAPWQLGKN KTSREN QI  SLD  P+ + 
Sbjct  1    MRRWAFLLRPQWLALFVVVLAFAYLCFTVLAPWQLGKNTKTSRENDQISRSLDADPISVT  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            T+LP+QDS+APD QW++VTATG+YLP+ QVLARLR+++GD AFEVL PF VDGGPTVLVD
Sbjct  61   TVLPEQDSAAPDEQWQQVTATGRYLPEAQVLARLRLIDGDPAFEVLVPFAVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  GS VPPI  LP  TVTITARLRDSE     K PF  DG +QVYSINT Q+++
Sbjct  121  RGYVRPIEGSKVPPIDALPTGTVTITARLRDSEGVARDKTPFEADGVKQVYSINTEQISS  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            +TGV LAGSYLQL+ DQPGGLGV+ +PHLD GPFLSYGIQWI+FGI+APIG+GYF Y+EI
Sbjct  181  VTGVPLAGSYLQLVADQPGGLGVIPLPHLDAGPFLSYGIQWIAFGIIAPIGVGYFVYSEI  240

Query  241  RARRREKA---------GSPPPDKPMTVEQKLADRYGRRR  271
            R RRREKA             P  P++ EQKLADRYG+RR
Sbjct  241  RVRRREKALADAASSESSGDEPAAPLSTEQKLADRYGKRR  280


>gi|118464619|ref|YP_881413.1| hypothetical protein MAV_2204 [Mycobacterium avium 104]
 gi|118165906|gb|ABK66803.1| conserved hypothetical protein [Mycobacterium avium 104]
Length=276

 Score =  383 bits (983),  Expect = 2e-104, Method: Compositional matrix adjust.
 Identities = 205/276 (75%), Positives = 235/276 (86%), Gaps = 5/276 (1%)

Query  1    MPR----LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPP  56
            MPR    L+FLLRPGW+ LALVVVAF YLCFTVLAPWQLGK+++TS++N QI +SL TPP
Sbjct  1    MPRWLRGLSFLLRPGWVVLALVVVAFAYLCFTVLAPWQLGKHSRTSQQNHQIEHSLTTPP  60

Query  57   VPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPT  116
            VPLKTLLPQQ+S+AP  QWR+V+ATG YL DVQVLARLRV++   AFEVLAPFVVDGGPT
Sbjct  61   VPLKTLLPQQNSAAPAEQWRQVSATGHYLADVQVLARLRVIDSKPAFEVLAPFVVDGGPT  120

Query  117  VLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTG  176
            VLVDRGYVRP  GS VPPIPR P  TVTITARLR+SEP+ AGKDPFV DG +QVYSI+T 
Sbjct  121  VLVDRGYVRPLEGSRVPPIPRPPADTVTITARLRNSEPAAAGKDPFVGDGVRQVYSIDTE  180

Query  177  QVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFA  236
            Q+A LT V LAGSYLQL++ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIG+GYFA
Sbjct  181  QIAVLTKVPLAGSYLQLVDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGVGYFA  240

Query  237  YAEIRARRREK-AGSPPPDKPMTVEQKLADRYGRRR  271
            Y+E+RARR EK   +P  + P +V+ KLADRYGRRR
Sbjct  241  YSELRARRAEKQPAAPAAEAPQSVQDKLADRYGRRR  276


>gi|41408084|ref|NP_960920.1| hypothetical protein MAP1986 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|41396439|gb|AAS04303.1| hypothetical protein MAP_1986 [Mycobacterium avium subsp. paratuberculosis 
K-10]
 gi|336461846|gb|EGO40702.1| hypothetical protein MAPs_26830 [Mycobacterium avium subsp. paratuberculosis 
S397]
Length=275

 Score =  376 bits (966),  Expect = 1e-102, Method: Compositional matrix adjust.
 Identities = 205/276 (75%), Positives = 236/276 (86%), Gaps = 6/276 (2%)

Query  1    MPR----LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPP  56
            MPR    L+FLLRPGW+ LALVVVAF YLCFTVLAPWQLGK+++TS++N QI +SL TPP
Sbjct  1    MPRWLRGLSFLLRPGWVVLALVVVAFAYLCFTVLAPWQLGKHSRTSQQNHQIEHSLTTPP  60

Query  57   VPLKTLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPT  116
            VPLKTLLPQQ+S+AP  QWR+V+ATG YL DVQVLARLRV++   AFEVLAPFVVDGGPT
Sbjct  61   VPLKTLLPQQNSAAPAEQWRQVSATGHYLADVQVLARLRVIDSKPAFEVLAPFVVDGGPT  120

Query  117  VLVDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTG  176
            VLVDRGYVRP  GS VPPIPR P  TVTITARLR+SEP+ AGKDPFV DG +QVYSI+T 
Sbjct  121  VLVDRGYVRPLEGSRVPPIPRPPADTVTITARLRNSEPA-AGKDPFVGDGVRQVYSIDTE  179

Query  177  QVAALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFA  236
            Q+A LT V LAGSYLQL++ QPGGLGV+GVP LD GPFLSYGIQWI+FGILAPIG+GYFA
Sbjct  180  QIAVLTKVPLAGSYLQLVDGQPGGLGVVGVPQLDAGPFLSYGIQWIAFGILAPIGVGYFA  239

Query  237  YAEIRARRREK-AGSPPPDKPMTVEQKLADRYGRRR  271
            Y+E+RARR E+   +P P+ P +V+ KLADRYGRRR
Sbjct  240  YSELRARRAERQPAAPAPEAPQSVQDKLADRYGRRR  275


>gi|118470407|ref|YP_888587.1| hypothetical protein MSMEG_4311 [Mycobacterium smegmatis str. 
MC2 155]
 gi|118171694|gb|ABK72590.1| conserved hypothetical protein [Mycobacterium smegmatis str. 
MC2 155]
Length=277

 Score =  374 bits (959),  Expect = 1e-101, Method: Compositional matrix adjust.
 Identities = 192/278 (70%), Positives = 218/278 (79%), Gaps = 8/278 (2%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRP WLAL +VV+AF YLCFTVLAPWQLGKN KTSREN QI  SL   PVPL 
Sbjct  1    MRRLGFLLRPQWLALIVVVLAFAYLCFTVLAPWQLGKNTKTSRENSQIANSLQAEPVPLT  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
             +LP QDS++ D QWRRVTATG+YLP+ QVLARLRV+EG+ AFEVL PF V+GGPT+LVD
Sbjct  61   DILPHQDSTS-DDQWRRVTATGRYLPEGQVLARLRVIEGEPAFEVLTPFAVEGGPTILVD  119

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  GS VP I   P  TV+ITARLRDSE    GK+PF  DG  QVYSINTGQV+ 
Sbjct  120  RGYVRPVEGSGVPAIDPPPTDTVSITARLRDSEAVATGKEPFRADGALQVYSINTGQVSQ  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTG  LAGSYLQL+++QPGGLG + +PHLD GPFLSYGIQWI+FGI+APIGLGYF YAEI
Sbjct  180  LTGTPLAGSYLQLVDNQPGGLGAIPLPHLDAGPFLSYGIQWIAFGIIAPIGLGYFMYAEI  239

Query  241  RARRREK-------AGSPPPDKPMTVEQKLADRYGRRR  271
            + RRRE+       A  P P   +T E+KLADRYG+RR
Sbjct  240  QQRRRERAAQAKKDAAGPRPAAELTPEEKLADRYGKRR  277


>gi|333990301|ref|YP_004522915.1| transmembrane protein [Mycobacterium sp. JDM601]
 gi|333486269|gb|AEF35661.1| transmembrane protein [Mycobacterium sp. JDM601]
Length=277

 Score =  358 bits (920),  Expect = 4e-97, Method: Compositional matrix adjust.
 Identities = 189/277 (69%), Positives = 216/277 (78%), Gaps = 6/277 (2%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RLAFLLRP WLALA+VV+AF YLCFTVLAPWQLGKN  T+R N Q+  +L   PVPL 
Sbjct  1    MRRLAFLLRPSWLALAVVVLAFAYLCFTVLAPWQLGKNTTTTRANSQLERALTAEPVPLT  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            T+LP QDSSAPD QW+ VTATG+YLPD QVL RLR+++G  AFEVL PF V GGPTVLV+
Sbjct  61   TVLPHQDSSAPDEQWQPVTATGRYLPDAQVLVRLRLIDGAPAFEVLTPFAVAGGPTVLVN  120

Query  121  RGYVRPQV-GSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA  179
            RGYVR    GS +P I   P   V+ITARLRDS+  + GK+PF  +GF+QVYSINT QVA
Sbjct  121  RGYVRTDDGGSRMPEITPPPDGQVSITARLRDSQAVIPGKNPFRENGFRQVYSINTEQVA  180

Query  180  ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE  239
            A+T V L GSYLQL++DQPGGLGV+ +P  D GPFLSYGIQWI+FGILAPIGLGYFA+AE
Sbjct  181  AVTEVPLTGSYLQLVDDQPGGLGVIALPRRDAGPFLSYGIQWIAFGILAPIGLGYFAFAE  240

Query  240  IRARR-----REKAGSPPPDKPMTVEQKLADRYGRRR  271
            +RARR        A S  P  PMTVEQKLADRYGRRR
Sbjct  241  LRARRSESSAAADADSDEPAPPMTVEQKLADRYGRRR  277


>gi|145223474|ref|YP_001134152.1| hypothetical protein Mflv_2887 [Mycobacterium gilvum PYR-GCK]
 gi|145215960|gb|ABP45364.1| putative conserved transmembrane protein [Mycobacterium gilvum 
PYR-GCK]
Length=279

 Score =  353 bits (906),  Expect = 1e-95, Method: Compositional matrix adjust.
 Identities = 186/275 (68%), Positives = 215/275 (79%), Gaps = 6/275 (2%)

Query  3    RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL  62
            R AFLLRP WLAL +VV AF YLCFTVLAPWQLGKN +TSREN QI  SL   P+P+ ++
Sbjct  5    RWAFLLRPQWLALFVVVAAFAYLCFTVLAPWQLGKNTQTSRENAQISRSLGAEPLPVTSV  64

Query  63   LPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRG  122
            LP QDS+AP  QW+RVTATG+YLPD QVLARLR+++GD AFEVL PF VDGGPTVLVDRG
Sbjct  65   LPHQDSAAPQEQWQRVTATGRYLPDAQVLARLRLIDGDPAFEVLVPFAVDGGPTVLVDRG  124

Query  123  YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALT  182
            YVRP  GS  P I   P +TVTITARLRDSE     K+PF  DG QQVYSIN  Q++ LT
Sbjct  125  YVRPVAGSQPPAIDAPPSETVTITARLRDSEGLARDKEPFQVDGVQQVYSININQISTLT  184

Query  183  GVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRA  242
            GV L GSYLQL+++QPGGLGV+ +PHLD GPFLSYGIQWI+FGI+APIG+GYF Y+EI+ 
Sbjct  185  GVPLVGSYLQLVDNQPGGLGVIPLPHLDAGPFLSYGIQWIAFGIIAPIGVGYFVYSEIKV  244

Query  243  RRREKAGSPPPDKPM------TVEQKLADRYGRRR  271
            RRREKA +    +        T EQKLADRYG+RR
Sbjct  245  RRREKALAAAAAESAEAGAAPTTEQKLADRYGKRR  279


>gi|315443835|ref|YP_004076714.1| hypothetical protein Mspyr1_22300 [Mycobacterium sp. Spyr1]
 gi|315262138|gb|ADT98879.1| uncharacterized conserved protein [Mycobacterium sp. Spyr1]
Length=277

 Score =  352 bits (904),  Expect = 3e-95, Method: Compositional matrix adjust.
 Identities = 187/277 (68%), Positives = 216/277 (78%), Gaps = 6/277 (2%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M R AFLLRP WLAL +VV AF YLCFTVLAPWQLGKN +TSREN QI  SL   P+P+ 
Sbjct  1    MRRWAFLLRPQWLALFVVVAAFAYLCFTVLAPWQLGKNTQTSRENAQISRSLGAEPLPVT  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            ++LP QDS+AP  QW+RVTATG+YLPD QVLARLR+++GD AFEVL PF VDGGPTVLVD
Sbjct  61   SVLPHQDSAAPQEQWQRVTATGRYLPDAQVLARLRLIDGDPAFEVLVPFAVDGGPTVLVD  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  GS  P I   P +TVTITARLRDSE     K+PF  DG QQVYSIN  Q++ 
Sbjct  121  RGYVRPVAGSQPPAIDPPPSETVTITARLRDSEGLARDKEPFQVDGVQQVYSININQIST  180

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LTGV L GSYLQL+++QPGGLGV+ +PHLD GPFLSYGIQWI+FGI+APIG+GYF Y+EI
Sbjct  181  LTGVPLVGSYLQLVDNQPGGLGVIPLPHLDAGPFLSYGIQWIAFGIIAPIGVGYFVYSEI  240

Query  241  RARRREKAGSPPPDKPM------TVEQKLADRYGRRR  271
            + RRREKA +    +        T EQKLADRYG+RR
Sbjct  241  KVRRREKALAAAAAESAEAGTAPTTEQKLADRYGKRR  277


>gi|169628987|ref|YP_001702636.1| hypothetical protein MAB_1899c [Mycobacterium abscessus ATCC 
19977]
 gi|169240954|emb|CAM61982.1| Conserved hypothetical protein [Mycobacterium abscessus]
Length=271

 Score =  322 bits (824),  Expect = 5e-86, Method: Compositional matrix adjust.
 Identities = 171/272 (63%), Positives = 196/272 (73%), Gaps = 3/272 (1%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RLAFLLRPGW+ALALVVVAF YLCFTVLAPWQLGKN KTSREN +I  S++  PVPLK
Sbjct  1    MRRLAFLLRPGWIALALVVVAFAYLCFTVLAPWQLGKNTKTSRENNRIAQSVNADPVPLK  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
              L    S   DA+WRRVTATG YLPD QVLARLRVV+   A+E L  F VD GP +LV+
Sbjct  61   NELRPDHSMPEDAEWRRVTATGHYLPDRQVLARLRVVDAKPAYEALTVFQVDDGPAILVN  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP+ G+ VPPIP  P   VTI ARLR+ E   + K PF+ +G  QVYSI   QV+ 
Sbjct  121  RGYVRPEQGTSVPPIPPAPAGQVTINARLREPE-QQSEKSPFLENGQYQVYSIVPVQVST  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            L  + LAG YLQL E QPGGLG + +P LD GPFLSYGIQWI+FGILAPIGLGYF ++EI
Sbjct  180  LVKIPLAGPYLQLSEGQPGGLGAIPLPQLDAGPFLSYGIQWIAFGILAPIGLGYFVFSEI  239

Query  241  R--ARRREKAGSPPPDKPMTVEQKLADRYGRR  270
            R          +  P  P T E++LADRYGRR
Sbjct  240  RQRRAAAAAVKAVKPGTPQTTEERLADRYGRR  271


>gi|226360326|ref|YP_002778104.1| hypothetical protein ROP_09120 [Rhodococcus opacus B4]
 gi|226238811|dbj|BAH49159.1| hypothetical membrane protein [Rhodococcus opacus B4]
Length=293

 Score =  270 bits (691),  Expect = 1e-70, Method: Compositional matrix adjust.
 Identities = 145/294 (50%), Positives = 185/294 (63%), Gaps = 24/294 (8%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRPGWL LALVV  F ++CF VLAPWQLGKN  T   NQ I  S+D  PVPL+
Sbjct  1    MRRLRFLLRPGWLVLALVVAGFAFMCFYVLAPWQLGKNTSTEHRNQLIADSVDAEPVPLE  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLL    ++ PD +WRRVTATG Y+ +  +L RLR +E   A+EV+ P  +  G T+LV+
Sbjct  61   TLLSGA-AANPDDEWRRVTATGSYVQNSDLLVRLRSIESQPAYEVVTPLQLTDGRTILVN  119

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  G+  PP+   P   VT+  R+R SE ++AGK+P   +G +QVY I+ GQ+  
Sbjct  120  RGYVRPIQGTEAPPVDPPPSGPVTLDGRVRKSEGTIAGKEPIDENGLRQVYYIDAGQIGG  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              G  L  +Y+QL  DQPGGLG + +P LD GP+LSYG+QW++FGI+AP+GL YF  AE 
Sbjct  180  FIGTGLVDAYIQLEPDQPGGLGTIPLPQLDAGPYLSYGLQWLAFGIMAPLGLAYFIRAEW  239

Query  241  RARRREKAGSPPPD-----------KPMT------------VEQKLADRYGRRR  271
            R RR+EK+     D           KP T             E KLADRYG+ R
Sbjct  240  RERRKEKSAQASDDAAPAPAPVARKKPFTRNKPVESAPRTAAEAKLADRYGKGR  293


>gi|333918909|ref|YP_004492490.1| transmembrane protein [Amycolicicoccus subflavus DQS3-9A1]
 gi|333481130|gb|AEF39690.1| Transmembrane protein [Amycolicicoccus subflavus DQS3-9A1]
Length=285

 Score =  267 bits (682),  Expect = 1e-69, Method: Compositional matrix adjust.
 Identities = 137/286 (48%), Positives = 182/286 (64%), Gaps = 16/286 (5%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M R +FL RPGWLAL  VV  F YLCFT+LAPWQLGKN  T   N  I  S++  PV + 
Sbjct  1    MRRFSFLFRPGWLALVAVVGVFAYLCFTILAPWQLGKNTATEHRNTLIERSVEAEPVSIG  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
             L     +   D +WRRVT +G YLP+ +V+ARLR +EG  +FEVL PF +D G  VL++
Sbjct  61   ELAGSGATPERDDEWRRVTLSGTYLPEHEVVARLRSIEGTPSFEVLTPFRLDDGSEVLIN  120

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RG+V  + G+ VP     P    T+  R+R  E ++ G++P + DG  QVYSIN G++ A
Sbjct  121  RGFVHTEQGTDVPEFAPAPAGQRTLEGRIRMPEAAL-GREPIISDGTTQVYSINPGEIGA  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            L  + L G Y+QL  +QPGGLG++G+P LD GPFLSYG+QWI+FGI+AP+GL YF  AE+
Sbjct  180  LADISLPGYYIQLAPEQPGGLGLIGLPQLDRGPFLSYGLQWIAFGIMAPLGLLYFVRAEL  239

Query  241  RARRREKAGSP----PPDKPM-----------TVEQKLADRYGRRR  271
            R R+  ++  P    P   P+           T E+KLA RYG+RR
Sbjct  240  RERKTSRSNEPGTADPDSGPVVYAEAEQATSRTPEEKLASRYGKRR  285


>gi|325677010|ref|ZP_08156681.1| transmembrane protein [Rhodococcus equi ATCC 33707]
 gi|325552172|gb|EGD21863.1| transmembrane protein [Rhodococcus equi ATCC 33707]
Length=322

 Score =  266 bits (681),  Expect = 2e-69, Method: Compositional matrix adjust.
 Identities = 134/261 (52%), Positives = 172/261 (66%), Gaps = 5/261 (1%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRPGWLALA VV  F ++CFTVLAPWQLGKN +T + N  +  SL+   V + 
Sbjct  1    MRRLTFLLRPGWLALAAVVAGFAFMCFTVLAPWQLGKNTRTEQRNGLLEQSLNAESVSID  60

Query  61   TLLPQQDSSAP--DAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVL  118
            TLL   D   P  + +WRRV  TG Y+PD  +L RLR VE   AFEVL P  +  G T+L
Sbjct  61   TLL---DGGGPTENDEWRRVLVTGTYVPDSDLLVRLRSVEDKPAFEVLTPLRMSDGDTLL  117

Query  119  VDRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQV  178
            V+RGYVRP+ G+  PPIP  P   VT+  R+R SE +V GK+P    G +QVY I++GQ+
Sbjct  118  VNRGYVRPEQGTQAPPIPAPPTGEVTVEGRIRMSEGTVPGKEPINEAGTRQVYYIDSGQI  177

Query  179  AALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA  238
                G  L   YLQL + QPGGLG + +P +D GP+LSYG+QW++FGI+AP+GL YF  A
Sbjct  178  GQFIGTDLVTGYLQLDDAQPGGLGTIPLPQIDAGPYLSYGLQWLAFGIMAPLGLAYFVRA  237

Query  239  EIRARRREKAGSPPPDKPMTV  259
            E+R RR+ K  + P   P T+
Sbjct  238  ELRERRKAKQRTAPTTAPDTL  258


>gi|111018200|ref|YP_701172.1| hypothetical protein RHA1_ro01187 [Rhodococcus jostii RHA1]
 gi|110817730|gb|ABG93014.1| conserved hypothetical protein [Rhodococcus jostii RHA1]
Length=293

 Score =  264 bits (675),  Expect = 9e-69, Method: Compositional matrix adjust.
 Identities = 144/294 (49%), Positives = 183/294 (63%), Gaps = 24/294 (8%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRPGWL LALVV  F ++CF VLAPWQLGKN  T   NQ I  S+D  PVPL+
Sbjct  1    MRRLRFLLRPGWLVLALVVAGFAFMCFYVLAPWQLGKNTSTEHRNQLIADSVDADPVPLE  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            TLL    +  PD +WRRVTATG Y+ +  +L RLR +E   A+EVL P  +  G T+LV+
Sbjct  61   TLLSGA-APNPDDEWRRVTATGAYVQNSDLLVRLRSIESQPAYEVLTPLQLTDGRTILVN  119

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  G+  PP+   P   VT+  R+R SE ++AGK+P   +G +QVY I+ GQ+  
Sbjct  120  RGYVRPVQGTEPPPVDPPPAGQVTLDGRVRKSEGTIAGKEPIDENGLRQVYYIDAGQIGG  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              G  L  +Y+QL   QPGGLG + +P LD GP+LSYG+QW++FGI+AP+GL YF  AE 
Sbjct  180  FIGTDLVDAYVQLEPGQPGGLGTIPLPQLDAGPYLSYGLQWLAFGIMAPLGLAYFIRAEW  239

Query  241  RARRREKAGSPPPD-----------------KPM------TVEQKLADRYGRRR  271
            R RR+EK+     D                 KP+        E KLADRYG+ R
Sbjct  240  RERRKEKSAKTSDDSAPVPTPVARKKPFARSKPVESAPRTAAEAKLADRYGKGR  293


>gi|312140243|ref|YP_004007579.1| integral membrane protein [Rhodococcus equi 103S]
 gi|311889582|emb|CBH48899.1| putative integral membrane protein [Rhodococcus equi 103S]
Length=325

 Score =  261 bits (668),  Expect = 6e-68, Method: Compositional matrix adjust.
 Identities = 130/247 (53%), Positives = 166/247 (68%), Gaps = 5/247 (2%)

Query  3    RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL  62
            RL FLLRPGWLALA VV  F ++CFTVLAPWQLGKN +T + N  +  SL+   V + TL
Sbjct  6    RLTFLLRPGWLALAAVVAGFAFMCFTVLAPWQLGKNTRTEQRNGLLEQSLNAESVSIDTL  65

Query  63   LPQQDSSAP--DAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
            L   D   P  + +WRRV  TG Y+PD  +L RLR VE   AFEVL P  +  G T+LV+
Sbjct  66   L---DGGGPTENDEWRRVLVTGTYVPDSDLLVRLRSVEDKPAFEVLTPLRMSDGDTLLVN  122

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP+ G+  PPIP  P   VT+  R+R SE +V GK+P    G +QVY I++GQ+  
Sbjct  123  RGYVRPEQGTQAPPIPAPPTGEVTVEGRIRMSEGTVPGKEPINEAGTRQVYYIDSGQIGQ  182

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              G  L   YLQL + QPGGLG + +P +D GP+LSYG+QW++FGI+AP+GL YF  AE+
Sbjct  183  FIGTDLVTGYLQLDDAQPGGLGTIPLPQIDAGPYLSYGLQWLAFGIMAPLGLAYFVRAEL  242

Query  241  RARRREK  247
            R RR+ K
Sbjct  243  RERRKAK  249


>gi|54023598|ref|YP_117840.1| hypothetical protein nfa16300 [Nocardia farcinica IFM 10152]
 gi|54015106|dbj|BAD56476.1| hypothetical protein [Nocardia farcinica IFM 10152]
Length=293

 Score =  257 bits (656),  Expect = 1e-66, Method: Compositional matrix adjust.
 Identities = 147/296 (50%), Positives = 181/296 (62%), Gaps = 28/296 (9%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRP W+ L +VVVAF YLCFTVLAPWQLGKN  T   NQ I  S+   PV + 
Sbjct  1    MRRLTFLLRPSWVILGVVVVAFAYLCFTVLAPWQLGKNTATEERNQLIADSVRAEPVDVT  60

Query  61   TLLPQQDSSA-PDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLV  119
             +L   D+ A P ++WRRV ATG ++P+  VL RLR ++G   + VLA F +D G T+LV
Sbjct  61   GVL---DAPADPRSEWRRVIATGGFVPESTVLVRLRHLDGAPGYAVLAAFRLDDGRTLLV  117

Query  120  DRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA  179
            DRG V    GS  P +P  P     + AR+R SE   A + P V DG++QVYSI+T Q  
Sbjct  118  DRGLVAAVDGSRPPQVPDPPTGPQRLEARVRLSEGVSAERPPLVEDGYRQVYSIDTAQAG  177

Query  180  ALTGVQLA-------GSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGL  232
             + G +L        G YLQL E QPG      +P LD GP+LSYG+QW++FGI+AP+GL
Sbjct  178  TVMGQRLTPIPVGERGGYLQLSEGQPGAFAPTPLPQLDAGPYLSYGLQWLAFGIMAPLGL  237

Query  233  GYFAYAEIRARRREKAGSPPPDKPMT-----------------VEQKLADRYGRRR  271
            GYF YAE+R RRREKAG PP   P T                  E +LADRYGRRR
Sbjct  238  GYFVYAELRERRREKAGQPPTADPGTAEPATGPAEPEPAPAPSTEARLADRYGRRR  293


>gi|229490254|ref|ZP_04384096.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
 gi|229322786|gb|EEN88565.1| conserved hypothetical protein [Rhodococcus erythropolis SK121]
Length=312

 Score =  253 bits (645),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 130/249 (53%), Positives = 165/249 (67%), Gaps = 1/249 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRPGWL LA VV  F YLCFTVLAPWQLGKN KT   N  I  S++   VP+ 
Sbjct  1    MRRLKFLLRPGWLVLAAVVGLFAYLCFTVLAPWQLGKNTKTEHRNDLISNSINAETVPIG  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
             ++    + APD +WR +TA G YLPD  +L RL+ +EG  ++E+L PF +D G T+LV+
Sbjct  61   DVI-ADSTIAPDDEWRNITAAGTYLPDADILVRLQSIEGAPSYEILTPFRLDDGRTILVN  119

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  G+  PPI   P   VT+  R+R SE +  G+ P   DG +QVYSI+   +  
Sbjct  120  RGYVRPINGAEAPPIAAPPTDPVTLNGRVRLSEGTAPGRVPMFEDGAKQVYSIDAQPIGE  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              G  L  +Y+QL  DQPGGLG + +P LD GP+LSYG QW++FGI+AP+GL YF  AE 
Sbjct  180  FIGTDLIDAYIQLEPDQPGGLGTIPLPQLDAGPYLSYGFQWLAFGIMAPLGLAYFIRAEW  239

Query  241  RARRREKAG  249
            R RR+EKA 
Sbjct  240  RERRKEKAA  248


>gi|226307151|ref|YP_002767111.1| hypothetical protein RER_36640 [Rhodococcus erythropolis PR4]
 gi|226186268|dbj|BAH34372.1| conserved hypothetical protein [Rhodococcus erythropolis PR4]
Length=312

 Score =  252 bits (644),  Expect = 3e-65, Method: Compositional matrix adjust.
 Identities = 130/249 (53%), Positives = 165/249 (67%), Gaps = 1/249 (0%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M RL FLLRPGWL LA VV  F YLCFTVLAPWQLGKN KT   N  I  S++   VP+ 
Sbjct  1    MRRLKFLLRPGWLVLAAVVGLFAYLCFTVLAPWQLGKNTKTEHRNDLISNSINAETVPIG  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVD  120
             ++    + APD +WR +TA G YLPD  +L RL+ +EG  ++E+L PF +D G T+LV+
Sbjct  61   DVVADS-TVAPDDEWRNITAAGTYLPDADILVRLQSIEGAPSYEILTPFRLDDGRTILVN  119

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
            RGYVRP  G+  PPI   P   VT+  R+R SE +  G+ P   DG +QVYSI+   +  
Sbjct  120  RGYVRPINGAEAPPIAAPPTDPVTLNGRVRLSEGTAPGRVPMFEDGAKQVYSIDAQPIGE  179

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              G  L  +Y+QL  DQPGGLG + +P LD GP+LSYG QW++FGI+AP+GL YF  AE 
Sbjct  180  FIGTDLIDAYIQLEPDQPGGLGTIPLPQLDAGPYLSYGFQWLAFGIMAPLGLAYFIRAEW  239

Query  241  RARRREKAG  249
            R RR+EKA 
Sbjct  240  RERRKEKAA  248


>gi|296140408|ref|YP_003647651.1| transmembrane protein [Tsukamurella paurometabola DSM 20162]
 gi|296028542|gb|ADG79312.1| putative transmembrane protein [Tsukamurella paurometabola DSM 
20162]
Length=294

 Score =  239 bits (610),  Expect = 3e-61, Method: Compositional matrix adjust.
 Identities = 119/242 (50%), Positives = 161/242 (67%), Gaps = 0/242 (0%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
            + +P W+ALA+ V+AFT LC++VLAPWQL KN+ TS  NQQI  S++  PVP   LL  +
Sbjct  8    VFQPRWIALAVAVLAFTALCWSVLAPWQLNKNSSTSHRNQQISDSVNADPVPAAQLLGGR  67

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP  126
                 DA+WR+VT TG+YL D Q LARLR  +G+ A+EVL PF  + G T LVDRG+VR 
Sbjct  68   TEVPKDAEWRKVTLTGRYLVDKQSLARLRNQDGNPAYEVLVPFAANDGATYLVDRGFVRT  127

Query  127  QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL  186
              G  +P I   P   VT+ AR+R  E + A + P V   + QVY+I+   +    G+  
Sbjct  128  PTGGVIPDIAPAPSDVVTVVARIRAPETTSADRGPRVEGSYLQVYAIDPRAIGPAQGITF  187

Query  187  AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE  246
            A  YL L E+QPGGL  + +P LD GP+LSYG+QW++FG++AP+ LGYF YAE+R RR +
Sbjct  188  APGYLNLTENQPGGLAPVPLPMLDAGPYLSYGLQWLAFGVMAPLALGYFVYAELRRRRED  247

Query  247  KA  248
            +A
Sbjct  248  RA  249


>gi|326382468|ref|ZP_08204159.1| hypothetical protein SCNU_06000 [Gordonia neofelifaecis NRRL 
B-59395]
 gi|326198587|gb|EGD55770.1| hypothetical protein SCNU_06000 [Gordonia neofelifaecis NRRL 
B-59395]
Length=313

 Score =  235 bits (600),  Expect = 5e-60, Method: Compositional matrix adjust.
 Identities = 122/248 (50%), Positives = 158/248 (64%), Gaps = 2/248 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   LRPGWL LA+ VV F   CFTVLAPWQLGKN+ T   N  IR +  T PVP+  L 
Sbjct  2    LKSFLRPGWLLLAVFVVTFAAACFTVLAPWQLGKNSDTEHRNDLIRTAESTQPVPIDELA  61

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVL-VDRG  122
            P      PD++WR V  TG YL D QV  RLRVV+   A EV+ PF V G   VL VDRG
Sbjct  62   PAGRPLDPDSEWREVRVTGHYLDDKQVQIRLRVVDERPAVEVVTPFQVAGTDRVLFVDRG  121

Query  123  YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALT  182
            YVRP V ++   +P  P + VTITARLR +E +  GK+P   +G +  Y+I+TG +   T
Sbjct  122  YVRP-VDNNRVDVPPAPTEEVTITARLRKTESTSPGKEPRTENGVRTAYTIDTGLIGEST  180

Query  183  GVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRA  242
             +     YLQL  +QPG LG + +P L+ GP+LSYG+QW++FG++AP+G  YF Y+E++A
Sbjct  181  ALTSDRLYLQLSPNQPGSLGEIALPQLESGPYLSYGLQWLAFGVMAPLGAAYFIYSEVKA  240

Query  243  RRREKAGS  250
            RR  K  +
Sbjct  241  RRTAKHNA  248


>gi|262202992|ref|YP_003274200.1| hypothetical protein Gbro_3101 [Gordonia bronchialis DSM 43247]
 gi|262086339|gb|ACY22307.1| conserved hypothetical protein [Gordonia bronchialis DSM 43247]
Length=327

 Score =  224 bits (571),  Expect = 1e-56, Method: Compositional matrix adjust.
 Identities = 116/241 (49%), Positives = 154/241 (64%), Gaps = 3/241 (1%)

Query  1    MPRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLK  60
            M  L  +LRPGW+AL +VV+AF   CFT+LAPWQLGKN+ T   N  IR + DT PVPL 
Sbjct  1    MHVLRTVLRPGWIALGVVVIAFAVACFTLLAPWQLGKNSSTEHRNDLIRAAADTGPVPLA  60

Query  61   TLLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVL-V  119
             L P     A + +WR VT +G YLP  Q L RLR V+   A EV+ PF V G   V+ V
Sbjct  61   QLAPTGAFDASN-EWREVTISGHYLPAAQTLVRLRNVDEQAAIEVVTPFAVAGTDRVIAV  119

Query  120  DRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA  179
            DRG+VRP  G+  PPIP +P   VTI+ R+R  E +  G+     +    VY+I+  ++ 
Sbjct  120  DRGFVRPAEGA-APPIPAVPTGEVTISGRIRAPEGTTPGRGAHSEENMLAVYTIDPAEIG  178

Query  180  ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE  239
              TG+++ G Y+QL   QPG LG + +P LD GP+LSYG+QW++FGI+AP+G  YF Y+E
Sbjct  179  RATGLRMDGFYVQLSPAQPGSLGEIPLPQLDSGPYLSYGLQWLAFGIMAPLGAAYFLYSE  238

Query  240  I  240
            I
Sbjct  239  I  239


>gi|259507756|ref|ZP_05750656.1| membrane protein [Corynebacterium efficiens YS-314]
 gi|259164549|gb|EEW49103.1| membrane protein [Corynebacterium efficiens YS-314]
Length=336

 Score =  214 bits (546),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 117/248 (48%), Positives = 154/248 (63%), Gaps = 8/248 (3%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L PGW+   LV++ F+Y  FT+LAPWQL K+ +  + N QI+   +   VP   + 
Sbjct  16   LRAFLSPGWILSLLVMLTFSYAAFTMLAPWQLNKDEEIIQRNTQIQEGYNREVVPYSEVF  75

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
                S  P+ +W RV+ TGQYLP  + L RLR VE   AF+ L PF ++ G TVLV+RG+
Sbjct  76   DADGSVPPENEWYRVSLTGQYLPQNEALLRLRPVETTPAFQSLTPFQLEDGRTVLVNRGF  135

Query  124  VRPQVGSHVP---PIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
               Q G+ VP   P P  PV  V I ARL +  P  A   P    G++QVY INT QV  
Sbjct  136  EASQ-GTIVPEMEPAPSTPVTIVGI-ARLNEGMPENA---PLEDSGYKQVYGINTQQVGE  190

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            L G+ L   Y+QL++DQPG L  + +P LD G  LSYG+QWI+FG++APIGLGYF +AE+
Sbjct  191  LVGLDLGEDYVQLLDDQPGVLNAMPIPQLDRGSHLSYGMQWIAFGVMAPIGLGYFIWAEM  250

Query  241  RARRREKA  248
            R RRR+KA
Sbjct  251  RERRRDKA  258


>gi|25028695|ref|NP_738749.1| hypothetical protein CE2139 [Corynebacterium efficiens YS-314]
 gi|23493981|dbj|BAC18949.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length=364

 Score =  214 bits (546),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 117/248 (48%), Positives = 154/248 (63%), Gaps = 8/248 (3%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L PGW+   LV++ F+Y  FT+LAPWQL K+ +  + N QI+   +   VP   + 
Sbjct  44   LRAFLSPGWILSLLVMLTFSYAAFTMLAPWQLNKDEEIIQRNTQIQEGYNREVVPYSEVF  103

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
                S  P+ +W RV+ TGQYLP  + L RLR VE   AF+ L PF ++ G TVLV+RG+
Sbjct  104  DADGSVPPENEWYRVSLTGQYLPQNEALLRLRPVETTPAFQSLTPFQLEDGRTVLVNRGF  163

Query  124  VRPQVGSHVP---PIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAA  180
               Q G+ VP   P P  PV  V I ARL +  P  A   P    G++QVY INT QV  
Sbjct  164  EASQ-GTIVPEMEPAPSTPVTIVGI-ARLNEGMPENA---PLEDSGYKQVYGINTQQVGE  218

Query  181  LTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            L G+ L   Y+QL++DQPG L  + +P LD G  LSYG+QWI+FG++APIGLGYF +AE+
Sbjct  219  LVGLDLGEDYVQLLDDQPGVLNAMPIPQLDRGSHLSYGMQWIAFGVMAPIGLGYFIWAEM  278

Query  241  RARRREKA  248
            R RRR+KA
Sbjct  279  RERRRDKA  286


>gi|134098163|ref|YP_001103824.1| hypothetical protein SACE_1577 [Saccharopolyspora erythraea NRRL 
2338]
 gi|291007558|ref|ZP_06565531.1| hypothetical protein SeryN2_23789 [Saccharopolyspora erythraea 
NRRL 2338]
 gi|133910786|emb|CAM00899.1| hypothetical protein SACE_1577 [Saccharopolyspora erythraea NRRL 
2338]
Length=299

 Score =  214 bits (544),  Expect = 1e-53, Method: Compositional matrix adjust.
 Identities = 113/251 (46%), Positives = 153/251 (61%), Gaps = 6/251 (2%)

Query  3    RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPL-KT  61
            RL FLLRPGW+ L  +VV F  LCFT+LAPWQ  +N +    N  I  S   PP P+ + 
Sbjct  2    RLKFLLRPGWIGLIGLVVVFATLCFTLLAPWQFSRNDQAQARNNAIAESFHAPPKPIGEV  61

Query  62   LLPQQDSSAPD--AQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLV  119
            L P Q   APD   +W RVT TG+YLP+ + LA  R V G+ AFEVL PF +  G T+LV
Sbjct  62   LAPGQ---APDVRTEWARVTVTGRYLPEGETLAWQRTVLGEPAFEVLTPFRLADGTTLLV  118

Query  120  DRGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVA  179
            DRG+VRP  G+  P     P   VT+TAR+R  E     +  F  D  + VY++N+  V 
Sbjct  119  DRGFVRPVDGTRAPDYAPAPAGEVTLTARVRSDERDSENRPAFSHDDHRWVYAVNSATVG  178

Query  180  ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE  239
            A TG+ L   Y  L+E QPGGL  L +P L+ GP+ SY +QWI+FG++A + +GY  Y+E
Sbjct  179  ASTGLDLRPGYFALVEGQPGGLSPLPLPRLESGPYFSYALQWIAFGVMAILAIGYLIYSE  238

Query  240  IRARRREKAGS  250
            +R ++  + G+
Sbjct  239  LRPQQGTEGGA  249


>gi|255324870|ref|ZP_05365979.1| conserved hypothetical protein [Corynebacterium tuberculostearicum 
SK141]
 gi|255298047|gb|EET77355.1| conserved hypothetical protein [Corynebacterium tuberculostearicum 
SK141]
Length=335

 Score =  211 bits (537),  Expect = 9e-53, Method: Compositional matrix adjust.
 Identities = 109/237 (46%), Positives = 149/237 (63%), Gaps = 2/237 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+ L L VVAF+YL FTVLAPWQLGK+      N+ I ++ +  P P++ L+
Sbjct  2    LKTFLKPGWVLLLLFVVAFSYLAFTVLAPWQLGKDDDIVERNELITHAYEADPQPVEDLV  61

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
               + +  D +W R T  G+YLP  +VL RLR V+   +++ L PF  D G T+LV+RG+
Sbjct  62   -DDNGAIKDDEWSRATLHGRYLPQDEVLLRLRPVDSGPSYQSLVPFRTDSGLTILVNRGW  120

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            V+    + VP IP  P    T+T  +R  E       P  R+G+QQVYSI+T Q+A+L  
Sbjct  121  VKAGEANAVPDIPDAPSGETTLTGMIRADEAEHQSA-PIKREGYQQVYSIHTEQIASLID  179

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              LA  Y+QL  DQPG L  + +P LD G  LSYG QWI+FGI+AP+GLGYF ++EI
Sbjct  180  APLAHDYIQLSADQPGVLNPMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFVWSEI  236


>gi|227503206|ref|ZP_03933255.1| transmembrane protein [Corynebacterium accolens ATCC 49725]
 gi|227076267|gb|EEI14230.1| transmembrane protein [Corynebacterium accolens ATCC 49725]
Length=323

 Score =  211 bits (537),  Expect = 1e-52, Method: Compositional matrix adjust.
 Identities = 105/235 (45%), Positives = 147/235 (63%), Gaps = 2/235 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+ + L VVAF+YL F+VLAPWQLGK+      N+ I ++ +  P P+  ++
Sbjct  2    LKTFLKPGWVLMLLFVVAFSYLAFSVLAPWQLGKDDDIVERNENITHAYEADPQPIDQVV  61

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
               D +    +W R T  G YLP+ +VL RLR      +++ L PF  D G T+L++RG+
Sbjct  62   -DDDGAISGDEWSRTTLKGHYLPEDEVLLRLRPAGSGPSYQSLVPFRTDAGLTMLINRGW  120

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            V  + G+ VP IP  P + VTIT  +R +E       P  ++G+QQVYSI+T QV +L G
Sbjct  121  VSAEEGNAVPDIPPAPSEEVTITGMVRSNEAEHKTA-PITQEGYQQVYSIHTEQVGSLIG  179

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA  238
              L   Y+QL EDQPG L  + +P LD G  LSYG QWI+FGI+AP+GLGYF ++
Sbjct  180  ADLGQDYIQLSEDQPGVLNAMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFIWS  234


>gi|227504612|ref|ZP_03934661.1| transmembrane protein [Corynebacterium striatum ATCC 6940]
 gi|227198822|gb|EEI78870.1| transmembrane protein [Corynebacterium striatum ATCC 6940]
Length=325

 Score =  210 bits (535),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 109/235 (47%), Positives = 147/235 (63%), Gaps = 2/235 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+ L + VVAF+Y  FTVLAPWQLGK+ +    N  I  + +  P PL  ++
Sbjct  2    LKTFLKPGWVLLLIFVVAFSYFAFTVLAPWQLGKDDQIVERNHLIAEAYEADPRPLNEVV  61

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
              +D +  D +W R T TG YL D +VL RLR V     ++ L PF  D G T+LV+RG+
Sbjct  62   -TKDGAIKDDEWSRATLTGHYLADDEVLLRLRPVSSGAVYQSLVPFQTDSGLTMLVNRGW  120

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            +    G+ VP IP  P + VTIT  +R  E   +   P  ++G+QQVYSI+T +VA+LT 
Sbjct  121  IAAGEGNTVPEIPPAPTEDVTITGMIRADELQHSSA-PIDQEGYQQVYSIHTEEVASLTD  179

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA  238
             +L   Y+QL  +QPG L  L VP LD G  LSYG QWI+FGI+AP+GLGYF ++
Sbjct  180  TKLGKDYIQLSPEQPGELTALEVPQLDRGNHLSYGYQWIAFGIMAPLGLGYFVWS  234


>gi|256375020|ref|YP_003098680.1| SURF1 family protein [Actinosynnema mirum DSM 43827]
 gi|255919323|gb|ACU34834.1| putative SURF1 family protein [Actinosynnema mirum DSM 43827]
Length=292

 Score =  209 bits (533),  Expect = 2e-52, Method: Compositional matrix adjust.
 Identities = 111/250 (45%), Positives = 151/250 (61%), Gaps = 10/250 (4%)

Query  3    RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL  62
            RL FLLRPGWLAL + V  F  +C  +LAPWQ G++ +   +N  +  ++ T PVP   +
Sbjct  5    RLRFLLRPGWLALTVAVWVFAGVCIWMLAPWQFGRDDQRVGQNTALSEAMATDPVPFAEV  64

Query  63   LPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRG  122
            L   D    + +WRRV  TGQ+L D + +ARLR V+G+ A+EVL PF    GP VLVDRG
Sbjct  65   L---DEPNAEHEWRRVVLTGQFLADSEAVARLRTVQGEAAYEVLTPFRTTDGPVVLVDRG  121

Query  123  YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALT  182
            YVRP  G  VP +   P + V++TA  R  EP +  +D F+ DG +QVYSINT  V  + 
Sbjct  122  YVRPADGMGVPDLTTPPSERVSVTAWTRAEEPDL--RDGFLEDGERQVYSINTATVGRMV  179

Query  183  GVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIR-  241
            G+ +   Y QL  DQPG    L +P ++ GPF SY +QW++FG++A  G  YF + E + 
Sbjct  180  GLDIRPGYFQLDVDQPGLESALPLPRMEAGPFYSYALQWLAFGVMAIGGWLYFTWREAKP  239

Query  242  ----ARRREK  247
                 R REK
Sbjct  240  GGALTREREK  249


>gi|311741452|ref|ZP_07715276.1| transmembrane protein [Corynebacterium pseudogenitalium ATCC 
33035]
 gi|311303622|gb|EFQ79701.1| transmembrane protein [Corynebacterium pseudogenitalium ATCC 
33035]
Length=335

 Score =  209 bits (533),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 108/237 (46%), Positives = 149/237 (63%), Gaps = 2/237 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+ L L VVAF+YL FTVLAPWQLGK+      N+ I ++ +  P P++ L+
Sbjct  2    LKTFLKPGWVLLLLFVVAFSYLAFTVLAPWQLGKDDDIVERNELITHAYEADPQPVEDLV  61

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
               + +  D +W R T  G+YLP  +VL RLR V+   +++ L PF  D G T+LV+RG+
Sbjct  62   -DGNGAIKDDEWSRATLHGKYLPQDEVLLRLRPVDSGPSYQSLVPFRTDSGLTILVNRGW  120

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            V+    + VP IP  P    T+T  +R  E       P  ++G+QQVYSI+T Q+A+L  
Sbjct  121  VKAGEANAVPDIPDAPSGETTLTGMIRADEAEHQSA-PIKQEGYQQVYSIHTEQIASLID  179

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
              LA  Y+QL  DQPG L  + +P LD G  LSYG QWI+FGI+AP+GLGYF ++EI
Sbjct  180  APLAHDYIQLSADQPGVLNPMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFVWSEI  236


>gi|306834676|ref|ZP_07467758.1| transmembrane protein [Corynebacterium accolens ATCC 49726]
 gi|304569441|gb|EFM44924.1| transmembrane protein [Corynebacterium accolens ATCC 49726]
Length=321

 Score =  209 bits (533),  Expect = 3e-52, Method: Compositional matrix adjust.
 Identities = 104/235 (45%), Positives = 148/235 (63%), Gaps = 2/235 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+ + L VVAF+YL F+VLAPWQLGK+      N+ I ++ +  P P+  ++
Sbjct  2    LKTFLKPGWVLMLLFVVAFSYLAFSVLAPWQLGKDDDIVERNENITHAYEADPQPIDQVV  61

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
               D +    +W R T  G YLP+ +VL RLR      +++ L PF  D G T+L++RG+
Sbjct  62   -DDDGAISGDEWSRTTLKGHYLPEDEVLLRLRPAGSGPSYQSLVPFRTDAGLTMLINRGW  120

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            V  + G+ VP IP  P + +TIT  +R +E +     P  ++G+QQVYSI+T QV +L G
Sbjct  121  VSAEEGNAVPYIPPAPSEEITITGMVRSNE-AEHKTAPITQEGYQQVYSIHTEQVGSLIG  179

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYA  238
              L   Y+QL EDQPG L  + +P LD G  LSYG QWI+FGI+AP+GLGYF ++
Sbjct  180  ADLGQDYIQLSEDQPGVLNAMPIPQLDRGNHLSYGYQWIAFGIMAPLGLGYFIWS  234


>gi|340794051|ref|YP_004759514.1| hypothetical protein CVAR_1087 [Corynebacterium variabile DSM 
44702]
 gi|340533961|gb|AEK36441.1| hypothetical protein CVAR_1087 [Corynebacterium variabile DSM 
44702]
Length=338

 Score =  206 bits (525),  Expect = 2e-51, Method: Compositional matrix adjust.
 Identities = 124/299 (42%), Positives = 171/299 (58%), Gaps = 35/299 (11%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
             L PGW+   ++ V F Y+ FTVLAPWQLGKN  T   N ++  +++  PVP+ ++LP  
Sbjct  25   FLTPGWVITTVIAVLFAYIAFTVLAPWQLGKNTDTKEFNGRLEDAMEHDPVPVSSVLPAD  84

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP  126
                 D++W RV   G++LP  +VL R R V G  AF+VL PF  D G TVLV+RG++ P
Sbjct  85   GRPVDDSEWTRVELQGRFLPSSEVLLRNRPVSGSPAFQVLTPFQTDDGLTVLVNRGWIEP  144

Query  127  Q-VGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQ  185
               G+ VP +   P    ++T  +R SE +V    P    G  QVY +NTGQ++ LT ++
Sbjct  145  TGGGAGVPEMTDAPETETSVTGYVRKSE-AVPDSAPITDQGRLQVYGMNTGQISRLTDLE  203

Query  186  LAGSYLQLIEDQPG-----GLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEI  240
            LAG+Y+QL E+        GL  + +P LD GP+LSYGIQWI+FGI+ P+GLGYF +AEI
Sbjct  204  LAGNYVQLDEESTAGRAGEGLNEIPLPKLDSGPYLSYGIQWIAFGIMVPLGLGYFLWAEI  263

Query  241  RARRR-------EKAGSPPPDKPMTV---------------------EQKLADRYGRRR  271
            R RRR        +AG+    +P+                       E+KLADRYG  R
Sbjct  264  RERRRQREEIAASEAGTQDAPEPVATPEPAPVPEEVVPEKDAATVSRERKLADRYGHSR  322


>gi|227548840|ref|ZP_03978889.1| transmembrane protein [Corynebacterium lipophiloflavum DSM 44291]
 gi|227079061|gb|EEI17024.1| transmembrane protein [Corynebacterium lipophiloflavum DSM 44291]
Length=285

 Score =  205 bits (521),  Expect = 7e-51, Method: Compositional matrix adjust.
 Identities = 114/243 (47%), Positives = 149/243 (62%), Gaps = 5/243 (2%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
             L PGW   A+++  F+Y  FT LAPWQLGKN +    N+ I  + D  PVP   + P  
Sbjct  5    FLTPGWAIAAILIALFSYFAFTFLAPWQLGKNERLVERNEHIVEAFDNDPVPYSAVAPDG  64

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYV-R  125
            +  AP  +W RVT TG+Y+P+ +VL RLR V+   AF+VL PF +D GPT+LV+RG+V  
Sbjct  65   EV-APADEWSRVTMTGRYVPEDEVLLRLRPVDKTPAFQVLTPFRIDNGPTMLVNRGWVPA  123

Query  126  PQVGSHVPPIPRLPVQTVTITARLR-DSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGV  184
               G+ VPPI   P   VTIT  LR D  P      P +  G   VYSI++ Q + +TG 
Sbjct  124  TDGGTTVPPIDPAPTSQVTITGLLRLDEGPHRLA--PLLDQGHAMVYSISSAQASEITGA  181

Query  185  QLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARR  244
             LA SYLQL   + G L  + +P L+ G  LSYG+QWI+FGI+AP GL YF +AE+R RR
Sbjct  182  DLAPSYLQLSPGESGVLEPIPLPMLETGNHLSYGLQWIAFGIMAPAGLIYFLWAEVRERR  241

Query  245  REK  247
            R K
Sbjct  242  RFK  244


>gi|317508018|ref|ZP_07965708.1| hypothetical protein HMPREF9336_02080 [Segniliparus rugosus ATCC 
BAA-974]
 gi|316253680|gb|EFV13060.1| hypothetical protein HMPREF9336_02080 [Segniliparus rugosus ATCC 
BAA-974]
Length=295

 Score =  204 bits (518),  Expect = 1e-50, Method: Compositional matrix adjust.
 Identities = 118/252 (47%), Positives = 149/252 (60%), Gaps = 8/252 (3%)

Query  2    PRLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKT  61
            PR    LRPGW+ALA  VV F  LCF V APWQLGKN +T+  N ++  +L+ PP PL  
Sbjct  6    PRWRVFLRPGWIALAAGVVLFAVLCFWVFAPWQLGKNGRTAERNDRVSRALEAPPAPLAE  65

Query  62   LLPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGD-QAFEVLAPFVVDGGPTVLVD  120
            LL  +    P ++WR V   G Y  D QVL R R V G  Q  +VL P   D G TVLVD
Sbjct  66   LL--RTGVGPQSEWRAVVVVGVYESDKQVLLRHRPVHGTAQGPQVLTPLRFDDGRTVLVD  123

Query  121  RGYVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVR-DGFQQVYSINTGQVA  179
            RGY+ PQ  +  PP P      V + ARLR  E + AG+   +  DG QQ+ +I+   +A
Sbjct  124  RGYL-PQGATAAPPAP---TGDVALKARLRLLERTPAGRPAIMTIDGSQQLEAIDASAIA  179

Query  180  ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE  239
             L G  L  +YLQL   QPG LG L  P LDPGP+LSYG+QW++FG++A   LGYF Y+E
Sbjct  180  PLVGAPLEPAYLQLDPGQPGALGALAEPDLDPGPYLSYGLQWLAFGVIALAALGYFGYSE  239

Query  240  IRARRREKAGSP  251
            +R     +A  P
Sbjct  240  LRPTEGHEAEEP  251


>gi|62391082|ref|YP_226484.1| hypothetical protein cg2460 [Corynebacterium glutamicum ATCC 
13032]
 gi|41326421|emb|CAF20583.1| putative membrane protein [Corynebacterium glutamicum ATCC 13032]
Length=333

 Score =  202 bits (513),  Expect = 6e-50, Method: Compositional matrix adjust.
 Identities = 107/242 (45%), Positives = 148/242 (62%), Gaps = 2/242 (0%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
             L PGW+  AL++V+F+Y   ++LAPWQL K+      N+QI  + +   VP   L    
Sbjct  36   FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS  95

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP  126
                   ++ RV+ TGQYLPD +VL RLR V+   AF+ L PF ++ G  VLV+RGY   
Sbjct  96   GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS  155

Query  127  QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL  186
            + G+ VP I   P   VTIT   R +E  + G  P    G+ QVY INT Q++ +TG+ L
Sbjct  156  E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGINTEQISDVTGLDL  213

Query  187  AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE  246
               Y+Q+ E +PG L  + +P +D G  LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct  214  GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD  273

Query  247  KA  248
            KA
Sbjct  274  KA  275


>gi|23308914|ref|NP_601443.2| hypothetical protein NCgl2160 [Corynebacterium glutamicum ATCC 
13032]
 gi|21325012|dbj|BAB99634.1| Uncharacterized ACR [Corynebacterium glutamicum ATCC 13032]
Length=318

 Score =  201 bits (512),  Expect = 7e-50, Method: Compositional matrix adjust.
 Identities = 107/242 (45%), Positives = 148/242 (62%), Gaps = 2/242 (0%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
             L PGW+  AL++V+F+Y   ++LAPWQL K+      N+QI  + +   VP   L    
Sbjct  21   FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS  80

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP  126
                   ++ RV+ TGQYLPD +VL RLR V+   AF+ L PF ++ G  VLV+RGY   
Sbjct  81   GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS  140

Query  127  QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL  186
            + G+ VP I   P   VTIT   R +E  + G  P    G+ QVY INT Q++ +TG+ L
Sbjct  141  E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGINTEQISDVTGLDL  198

Query  187  AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE  246
               Y+Q+ E +PG L  + +P +D G  LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct  199  GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD  258

Query  247  KA  248
            KA
Sbjct  259  KA  260


>gi|227543048|ref|ZP_03973097.1| conserved transmembrane protein [Corynebacterium glucuronolyticum 
ATCC 51866]
 gi|227181270|gb|EEI62242.1| conserved transmembrane protein [Corynebacterium glucuronolyticum 
ATCC 51866]
Length=295

 Score =  201 bits (510),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 108/243 (45%), Positives = 144/243 (60%), Gaps = 2/243 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+  A+++V F+Y   TVLAPWQLGK+   S +N QIR +L T PVP+  + 
Sbjct  7    LRTFLKPGWVITAVLIVVFSYFAITVLAPWQLGKHEVKSEQNTQIRTALRTDPVPVDEIF  66

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
                  A +A WR+V   G Y P  +V+ R+R V G+  F+VL  F    G   L++RGY
Sbjct  67   VNGALPADNA-WRQVELVGTYSPSDEVILRMRSVAGNPVFQVLTVFTTTSGDAYLINRGY  125

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            V  Q  S VP IP  P  TVTIT      E   +G+ P   D  Q V  IN  Q+++LTG
Sbjct  126  VPQQKDSGVPEIPAAPTDTVTITGNALPGEAD-SGRPPHADDSHQYVLDINLPQISSLTG  184

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRAR  243
              LA  Y+QL + QPG L  + +P LD GP+LSYG+QWI+ GI API L YF   E++ R
Sbjct  185  TSLADGYIQLADKQPGVLNAIPLPKLDGGPYLSYGLQWIAMGIGAPIALLYFIRMELKER  244

Query  244  RRE  246
            +R+
Sbjct  245  KRD  247


>gi|227488436|ref|ZP_03918752.1| conserved transmembrane protein [Corynebacterium glucuronolyticum 
ATCC 51867]
 gi|227091650|gb|EEI26962.1| conserved transmembrane protein [Corynebacterium glucuronolyticum 
ATCC 51867]
Length=295

 Score =  201 bits (510),  Expect = 1e-49, Method: Compositional matrix adjust.
 Identities = 108/243 (45%), Positives = 144/243 (60%), Gaps = 2/243 (0%)

Query  4    LAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLL  63
            L   L+PGW+  A+++V F+Y   TVLAPWQLGK+   S +N QIR +L T PVP+  + 
Sbjct  7    LRTFLKPGWVITAVLIVVFSYFAITVLAPWQLGKHEVKSEQNTQIRTALRTDPVPVDEIF  66

Query  64   PQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGY  123
                  A +A WR+V   G Y P  +V+ R+R V G+  F+VL  F    G   L++RGY
Sbjct  67   VNGALPADNA-WRQVELVGTYSPSDEVILRMRSVAGNPVFQVLTVFTTTSGDAYLINRGY  125

Query  124  VRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTG  183
            V  Q  S VP IP  P  TVTIT      E   +G+ P   D  Q V  IN  Q+++LTG
Sbjct  126  VPQQKDSGVPEIPAAPTDTVTITGNALPGEAD-SGRPPHADDSHQYVLDINLPQISSLTG  184

Query  184  VQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRAR  243
              LA  Y+QL + QPG L  + +P LD GP+LSYG+QWI+ GI API L YF   E++ R
Sbjct  185  TSLADGYIQLADKQPGVLNAIPLPKLDGGPYLSYGLQWIAMGIGAPIALLYFIRMELKER  244

Query  244  RRE  246
            +R+
Sbjct  245  KRD  247


>gi|344044320|gb|EGV39998.1| hypothetical protein CgS9114_10237 [Corynebacterium glutamicum 
S9114]
Length=333

 Score =  199 bits (506),  Expect = 3e-49, Method: Compositional matrix adjust.
 Identities = 106/242 (44%), Positives = 148/242 (62%), Gaps = 2/242 (0%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
             L PGW+  AL++V+F+Y   ++LAPWQL K+      N+QI  + +   VP   L    
Sbjct  36   FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS  95

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP  126
                   ++ RV+ TGQYLPD +VL RLR V+   AF+ L PF ++ G  VLV+RGY   
Sbjct  96   GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS  155

Query  127  QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL  186
            + G+ VP I   P   VTIT   R +E  + G  P    G+ QVY I+T Q++ +TG+ L
Sbjct  156  E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGISTEQISDVTGLDL  213

Query  187  AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE  246
               Y+Q+ E +PG L  + +P +D G  LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct  214  GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD  273

Query  247  KA  248
            KA
Sbjct  274  KA  275


>gi|145296199|ref|YP_001139020.1| hypothetical protein cgR_2117 [Corynebacterium glutamicum R]
 gi|140846119|dbj|BAF55118.1| hypothetical protein [Corynebacterium glutamicum R]
Length=333

 Score =  199 bits (506),  Expect = 4e-49, Method: Compositional matrix adjust.
 Identities = 106/242 (44%), Positives = 148/242 (62%), Gaps = 2/242 (0%)

Query  7    LLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQQ  66
             L PGW+  AL++V+F+Y   ++LAPWQL K+      N+QI  + +   VP   L    
Sbjct  36   FLSPGWIISALLIVSFSYAAISMLAPWQLHKDDDIVARNEQITEAFERDVVPYAELFDAS  95

Query  67   DSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVRP  126
                   ++ RV+ TGQYLPD +VL RLR V+   AF+ L PF ++ G  VLV+RGY   
Sbjct  96   GQIPSSQEFFRVSLTGQYLPDSEVLLRLRPVDSGPAFQSLTPFELENGQIVLVNRGYESS  155

Query  127  QVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQL  186
            + G+ VP I   P   VTIT   R +E  + G  P    G+ QVY I+T Q++ +TG+ L
Sbjct  156  E-GTIVPEIEPAPSTPVTITGFARKNE-GLPGSAPMEDSGYTQVYGISTEQISDVTGLDL  213

Query  187  AGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRRE  246
               Y+Q+ E +PG L  + +P +D G  LSYG QWI+FGI+AP+GLGYF +AE+R RRR+
Sbjct  214  GTDYVQVAEGEPGVLNPMPLPQMDRGNHLSYGFQWIAFGIMAPLGLGYFIWAEMRERRRD  273

Query  247  KA  248
            KA
Sbjct  274  KA  275


>gi|300783094|ref|YP_003763385.1| hypothetical protein AMED_1168 [Amycolatopsis mediterranei U32]
 gi|299792608|gb|ADJ42983.1| conserved hypothetical protein [Amycolatopsis mediterranei U32]
Length=276

 Score =  197 bits (502),  Expect = 1e-48, Method: Compositional matrix adjust.
 Identities = 108/242 (45%), Positives = 138/242 (58%), Gaps = 3/242 (1%)

Query  3    RLAFLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTL  62
            RL FLLRPGWLAL  VV  F   CFT+L+PWQ  +NA+  ++N  +  S    PVPL  L
Sbjct  2    RLRFLLRPGWLALTAVVFTFAICCFTLLSPWQFSRNAEREQQNSALETSFTAAPVPLAQL  61

Query  63   LPQQDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRG  122
            LP         +W  VT TGQYL D +V+ARLR V+G+ A+EVL P     G  VL+DRG
Sbjct  62   LPPGSVPGRYTEWHLVTVTGQYLADKEVVARLRTVQGEGAYEVLTPMRTTDGTVVLIDRG  121

Query  123  YVRPQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFV---RDGFQQVYSINTGQVA  179
            YVR    S   P    P  TV +TAR+R  E     +D F      G  Q Y +++  VA
Sbjct  122  YVRLDSKSGALPFAPPPAGTVQVTARVRADETDPKNRDAFADASTGGRLQSYVVDSRVVA  181

Query  180  ALTGVQLAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAE  239
              +G+ +   Y QL   QPG LG L +P  D GPFLSY +QWI+FG +A +G  YF   E
Sbjct  182  RASGLDIRPGYFQLDVGQPGVLGALPLPQTDSGPFLSYALQWIAFGAMALLGWLYFTVRE  241

Query  240  IR  241
            ++
Sbjct  242  LK  243


>gi|300858919|ref|YP_003783902.1| hypothetical protein cpfrc_01502 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|300686373|gb|ADK29295.1| hypothetical protein cpfrc_01502 [Corynebacterium pseudotuberculosis 
FRC41]
 gi|302206618|gb|ADL10960.1| Hypothetical protein CpC231_1494 [Corynebacterium pseudotuberculosis 
C231]
 gi|302331169|gb|ADL21363.1| Hypothetical protein Cp1002_1492 [Corynebacterium pseudotuberculosis 
1002]
 gi|308276862|gb|ADO26761.1| Putative membrane protein [Corynebacterium pseudotuberculosis 
I19]
 gi|341825305|gb|AEK92826.1| Hypothetical protein CpPAT10_1494 [Corynebacterium pseudotuberculosis 
PAT10]
Length=314

 Score =  197 bits (500),  Expect = 2e-48, Method: Compositional matrix adjust.
 Identities = 100/242 (42%), Positives = 139/242 (58%), Gaps = 2/242 (0%)

Query  6    FLLRPGWLALALVVVAFTYLCFTVLAPWQLGKNAKTSRENQQIRYSLDTPPVPLKTLLPQ  65
              L+PGW+  A++ +AF+Y   TVL+PWQL K+      N  I  + +  P P+  L   
Sbjct  13   IFLKPGWVITAVLAIAFSYFAITVLSPWQLNKDHDIVARNNHIEQAFENDPSPITDLFDG  72

Query  66   QDSSAPDAQWRRVTATGQYLPDVQVLARLRVVEGDQAFEVLAPFVVDGGPTVLVDRGYVR  125
              +   D +W R T TG YLPD +VL RLR V+G  A++ L PF  + G T+LV+RG++ 
Sbjct  73   SGNIKGDNEWMRATLTGHYLPDKEVLLRLRPVDGAPAYQSLVPFQSENGQTLLVNRGFIP  132

Query  126  PQVGSHVPPIPRLPVQTVTITARLRDSEPSVAGKDPFVRDGFQQVYSINTGQVAALTGVQ  185
             + G   P + + P   VTI    R +E  +    P   DG+ QV  I+T Q++ L    
Sbjct  133  LEAGK-PPRLDKAPSGKVTIVGHARHNE-GIPATPPLTADGYTQVNGISTEQISTLIHAT  190

Query  186  LAGSYLQLIEDQPGGLGVLGVPHLDPGPFLSYGIQWISFGILAPIGLGYFAYAEIRARRR  245
            L   YLQL  DQPG +  + +P LD G  LSYG QWI+FGI+AP+ L YF +AEI+ RRR
Sbjct  191  LGVDYLQLASDQPGEVHAMPIPKLDRGNHLSYGFQWIAFGIMAPLALIYFIWAEIKERRR  250

Query  246  EK  247
             K
Sbjct  251  AK  252



Lambda     K      H
   0.321    0.140    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Effective search space used: 419877318148


  Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
    Posted date:  Sep 5, 2011  4:36 AM
  Number of letters in database: 5,219,829,388
  Number of sequences in database:  15,229,318



Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40