BLASTP 2.2.25+
Reference:
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database
search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei
Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and
Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST
protein database searches with composition-based statistics and
other refinements", Nucleic Acids Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
15,229,318 sequences; 5,219,829,388 total letters
Query= Rv2236c
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
gi|308232073|ref|ZP_07663993.1| cobalamin biosynthesis transmemb... 605 2e-171
gi|15609373|ref|NP_216752.1| cobalamin biosynthesis protein [Myc... 604 7e-171
gi|253798697|ref|YP_003031698.1| hypothetical protein TBMG_01744... 603 8e-171
gi|15841728|ref|NP_336765.1| cobalamin biosynthesis protein [Myc... 602 3e-170
gi|31793416|ref|NP_855909.1| cobalamin biosynthesis protein [Myc... 599 1e-169
gi|339298772|gb|AEJ50882.1| hypothetical protein CCDC5180_2045 [... 599 2e-169
gi|296166126|ref|ZP_06848571.1| cobalamin biosynthesis protein D... 423 2e-116
gi|118617014|ref|YP_905346.1| cobalamin biosynthesis protein [My... 413 2e-113
gi|183983301|ref|YP_001851592.1| cobalamin biosynthesis transmem... 410 1e-112
gi|118466705|ref|YP_881412.1| cobalamin biosynthesis protein [My... 381 8e-104
gi|336461847|gb|EGO40703.1| cobalamin biosynthesis protein cobD/... 379 4e-103
gi|41408085|ref|NP_960921.1| cobalamin biosynthesis protein [Myc... 379 4e-103
gi|342857257|ref|ZP_08713913.1| cobalamin biosynthesis protein [... 373 2e-101
gi|254774913|ref|ZP_05216429.1| cobalamin biosynthesis protein [... 372 4e-101
gi|118471499|ref|YP_888588.1| cobalamin biosynthesis protein [My... 350 1e-94
gi|315443834|ref|YP_004076713.1| adenosylcobinamide-phosphate sy... 343 1e-92
gi|145223473|ref|YP_001134151.1| cobalamin biosynthesis protein ... 343 2e-92
gi|240170067|ref|ZP_04748726.1| cobalamin biosynthesis protein [... 338 9e-91
gi|108800315|ref|YP_640512.1| cobalamin biosynthesis protein [My... 335 7e-90
gi|120404592|ref|YP_954421.1| cobalamin biosynthesis protein [My... 333 3e-89
gi|54023595|ref|YP_117837.1| cobalamin biosynthesis protein [Noc... 312 5e-83
gi|325677008|ref|ZP_08156679.1| cobalamin biosynthesis protein D... 311 1e-82
gi|312140245|ref|YP_004007581.1| cobalamin biosynthesis protein ... 311 1e-82
gi|226307152|ref|YP_002767112.1| adenosylcobinamide-phosphate sy... 307 2e-81
gi|271968634|ref|YP_003342830.1| adenosylcobinamide-phosphate sy... 304 1e-80
gi|111018201|ref|YP_701173.1| cobalamin biosynthesis protein [Rh... 301 9e-80
gi|302529227|ref|ZP_07281569.1| cobalamin biosynthesis protein C... 298 9e-79
gi|169628986|ref|YP_001702635.1| cobalamin biosynthesis protein ... 293 3e-77
gi|343924125|ref|ZP_08763688.1| cobalamin biosynthesis protein C... 293 3e-77
gi|134098160|ref|YP_001103821.1| cobalamin biosynthesis protein ... 293 3e-77
gi|291007561|ref|ZP_06565534.1| cobalamin biosynthesis protein [... 292 4e-77
gi|269125538|ref|YP_003298908.1| cobalamin biosynthesis protein ... 287 1e-75
gi|296140409|ref|YP_003647652.1| cobalamin biosynthesis protein ... 286 4e-75
gi|297198772|ref|ZP_06916169.1| cobalamin biosynthesis protein C... 285 7e-75
gi|226360327|ref|YP_002778105.1| cobalamin biosynthesis protein ... 284 1e-74
gi|331696535|ref|YP_004332774.1| Cobalamin biosynthesis protein ... 284 1e-74
gi|256375019|ref|YP_003098679.1| cobalamin biosynthesis protein ... 278 6e-73
gi|300788874|ref|YP_003769165.1| adenosylcobinamide-phosphate sy... 277 2e-72
gi|158316627|ref|YP_001509135.1| cobalamin biosynthesis protein ... 276 2e-72
gi|326382465|ref|ZP_08204156.1| cobalamin biosynthesis protein [... 271 1e-70
gi|336178244|ref|YP_004583619.1| Cobalamin biosynthesis protein ... 271 1e-70
gi|29832959|ref|NP_827593.1| cobalamin biosynthesis protein [Str... 270 2e-70
gi|284031050|ref|YP_003380981.1| cobalamin biosynthesis protein ... 267 2e-69
gi|284989159|ref|YP_003407713.1| cobalamin biosynthesis protein ... 267 2e-69
gi|336115958|ref|YP_004570724.1| cobalamin biosynthesis protein ... 266 3e-69
gi|258650440|ref|YP_003199596.1| cobalamin biosynthesis protein ... 266 4e-69
gi|86741295|ref|YP_481695.1| cobalamin biosynthesis protein [Fra... 265 5e-69
gi|290961438|ref|YP_003492620.1| cobalamin biosynthesis protein ... 262 5e-68
gi|257055793|ref|YP_003133625.1| adenosylcobinamide-phosphate sy... 261 1e-67
gi|182439438|ref|YP_001827157.1| cobalamin biosynthesis protein ... 261 1e-67
>gi|308232073|ref|ZP_07663993.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis SUMu001]
gi|308379154|ref|ZP_07668905.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis SUMu010]
gi|308380307|ref|ZP_07669159.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis SUMu011]
gi|308215128|gb|EFO74527.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis SUMu001]
gi|308358005|gb|EFP46856.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis SUMu010]
gi|308361940|gb|EFP50791.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis SUMu011]
Length=319
Score = 605 bits (1561), Expect = 2e-171, Method: Compositional matrix adjust.
Identities = 313/313 (100%), Positives = 313/313 (100%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL
Sbjct 7 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 66
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL
Sbjct 67 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 126
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM
Sbjct 127 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 186
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP
Sbjct 187 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 246
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA
Sbjct 247 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 306
Query 301 AVLAVMLVYRRRP 313
AVLAVMLVYRRRP
Sbjct 307 AVLAVMLVYRRRP 319
>gi|15609373|ref|NP_216752.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis H37Rv]
gi|148662056|ref|YP_001283579.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis H37Ra]
gi|167969363|ref|ZP_02551640.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis H37Ra]
gi|1722940|sp|Q10518.1|COBD_MYCTU RecName: Full=Cobalamin biosynthesis protein CobD
gi|1261938|emb|CAA94658.1| Probable cobalamin biosynthesis transmembrane protein CobD [Mycobacterium
tuberculosis H37Rv]
gi|148506208|gb|ABQ74017.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis H37Ra]
Length=313
Score = 604 bits (1557), Expect = 7e-171, Method: Compositional matrix adjust.
Identities = 312/313 (99%), Positives = 313/313 (100%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
+FASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL
Sbjct 1 MFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL
Sbjct 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM
Sbjct 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP
Sbjct 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA
Sbjct 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
Query 301 AVLAVMLVYRRRP 313
AVLAVMLVYRRRP
Sbjct 301 AVLAVMLVYRRRP 313
>gi|253798697|ref|YP_003031698.1| hypothetical protein TBMG_01744 [Mycobacterium tuberculosis KZN
1435]
gi|254232388|ref|ZP_04925715.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis C]
gi|254365031|ref|ZP_04981077.1| cobalamin biosynthesis transmembrane protein cobD [Mycobacterium
tuberculosis str. Haarlem]
18 more sequence titles
Length=319
Score = 603 bits (1556), Expect = 8e-171, Method: Compositional matrix adjust.
Identities = 312/313 (99%), Positives = 312/313 (99%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL
Sbjct 7 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 66
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGAALQRLPGR WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL
Sbjct 67 LVGAVGLLGAALQRLPGRCWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 126
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM
Sbjct 127 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 186
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP
Sbjct 187 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 246
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA
Sbjct 247 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 306
Query 301 AVLAVMLVYRRRP 313
AVLAVMLVYRRRP
Sbjct 307 AVLAVMLVYRRRP 319
>gi|15841728|ref|NP_336765.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis CDC1551]
gi|148823444|ref|YP_001288198.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis F11]
gi|254551279|ref|ZP_05141726.1| cobalamin biosynthesis protein [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
27 more sequence titles
Length=313
Score = 602 bits (1551), Expect = 3e-170, Method: Compositional matrix adjust.
Identities = 311/313 (99%), Positives = 312/313 (99%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
+FASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL
Sbjct 1 MFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGAALQRLPGR WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL
Sbjct 61 LVGAVGLLGAALQRLPGRCWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM
Sbjct 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP
Sbjct 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA
Sbjct 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
Query 301 AVLAVMLVYRRRP 313
AVLAVMLVYRRRP
Sbjct 301 AVLAVMLVYRRRP 313
>gi|31793416|ref|NP_855909.1| cobalamin biosynthesis protein [Mycobacterium bovis AF2122/97]
gi|121638118|ref|YP_978342.1| cobalamin biosynthesis protein [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224990612|ref|YP_002645299.1| cobalamin biosynthesis protein [Mycobacterium bovis BCG str.
Tokyo 172]
9 more sequence titles
Length=313
Score = 599 bits (1545), Expect = 1e-169, Method: Compositional matrix adjust.
Identities = 310/313 (99%), Positives = 311/313 (99%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
+FAS WQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL
Sbjct 1 MFASIWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGAALQRLPGR WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL
Sbjct 61 LVGAVGLLGAALQRLPGRCWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM
Sbjct 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP
Sbjct 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA
Sbjct 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
Query 301 AVLAVMLVYRRRP 313
AVLAVMLVYRRRP
Sbjct 301 AVLAVMLVYRRRP 313
>gi|339298772|gb|AEJ50882.1| hypothetical protein CCDC5180_2045 [Mycobacterium tuberculosis
CCDC5180]
Length=319
Score = 599 bits (1545), Expect = 2e-169, Method: Compositional matrix adjust.
Identities = 311/313 (99%), Positives = 311/313 (99%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL
Sbjct 7 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 66
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGAALQRLPGR WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL
Sbjct 67 LVGAVGLLGAALQRLPGRCWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 126
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM
Sbjct 127 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 186
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP
Sbjct 187 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 246
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGALDVRLG PTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA
Sbjct 247 SPNAGVVEAAFAGALDVRLGWPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 306
Query 301 AVLAVMLVYRRRP 313
AVLAVMLVYRRRP
Sbjct 307 AVLAVMLVYRRRP 319
>gi|296166126|ref|ZP_06848571.1| cobalamin biosynthesis protein D [Mycobacterium parascrofulaceum
ATCC BAA-614]
gi|295898535|gb|EFG78096.1| cobalamin biosynthesis protein D [Mycobacterium parascrofulaceum
ATCC BAA-614]
Length=314
Score = 423 bits (1087), Expect = 2e-116, Method: Compositional matrix adjust.
Identities = 232/310 (75%), Positives = 248/310 (80%), Gaps = 3/310 (0%)
Query 7 QTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVG 66
+TRA GVL G L D+ GDP RGHPVA FGRAAA+LE++TYRD R AGAVHVG LV A
Sbjct 5 RTRAAGVLAGYLADLALGDPARGHPVAAFGRAAARLERVTYRDSRAAGAVHVGALVAASS 64
Query 67 LLGAALQRLP---GRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPS 123
LG LQR GR W VAATA A W ++GGTSLARTG +++LLE DVEAARRLLPS
Sbjct 65 ALGWMLQRAADRGGRPWSVAATAAAAWVSVGGTSLARTGLAMAELLEGGDVEAARRLLPS 124
Query 124 LCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGY 183
LCGRDPA L GPGL RA+LESVAENT+DAQV PLL AA G P VL YRAINTLDSMIGY
Sbjct 125 LCGRDPAWLDGPGLARASLESVAENTSDAQVAPLLCAAVGGAPGVLAYRAINTLDSMIGY 184
Query 184 RSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPN 243
RS RY RFGWAAARLDD ANYV AR TA LVV+CAP V GSP GAVRAWRRDAARHPSPN
Sbjct 185 RSERYARFGWAAARLDDAANYVAARVTAALVVLCAPFVSGSPAGAVRAWRRDAARHPSPN 244
Query 244 AGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVL 303
AGVVEAAFAGAL VRLGGPT+Y HELQIRPTLGDG P VADLRR LSR VQAGAAVL
Sbjct 245 AGVVEAAFAGALGVRLGGPTQYRHELQIRPTLGDGHEPTVADLRRTAALSRTVQAGAAVL 304
Query 304 AVMLVYRRRP 313
A ++ YR RP
Sbjct 305 AGLVAYRWRP 314
>gi|118617014|ref|YP_905346.1| cobalamin biosynthesis protein [Mycobacterium ulcerans Agy99]
gi|118569124|gb|ABL03875.1| cobalamin biosynthesis transmembrane protein CobD [Mycobacterium
ulcerans Agy99]
Length=313
Score = 413 bits (1061), Expect = 2e-113, Method: Compositional matrix adjust.
Identities = 241/313 (77%), Positives = 263/313 (85%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
+ AS Q R VGVL+G L D+V GDP+RGHPVA+FGR AA LE+ +YRD R AGAVHVG+
Sbjct 1 MVASARQARTVGVLVGYLADLVLGDPQRGHPVAVFGRLAAGLERASYRDTRAAGAVHVGV 60
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVG VGLLGA L R GR W VAATA ATW +LGGTSL RTGR++++LL+R D++AARRL
Sbjct 61 LVGGVGLLGAVLGRPAGRPWSVAATAMATWVSLGGTSLVRTGREMAELLDRGDLDAARRL 120
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQL P LTRAALESVAENT+DAQV PLLWAA GVPAVL YRA+NTLD+M
Sbjct 121 LPSLCGRDPAQLDVPDLTRAALESVAENTSDAQVAPLLWAAVGGVPAVLVYRAVNTLDAM 180
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
IGYRSPRYLRFGWAAARLDD ANY GAR TA LVV+CAP+VGGS GAVRAWRRDAARHP
Sbjct 181 IGYRSPRYLRFGWAAARLDDLANYFGARVTAGLVVLCAPLVGGSALGAVRAWRRDAARHP 240
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEAAFAGAL VRLGGPTRYH ELQIRPTLGDG P V DLRRAV LSR VQA A
Sbjct 241 SPNAGVVEAAFAGALRVRLGGPTRYHFELQIRPTLGDGGQPTVDDLRRAVTLSRAVQAAA 300
Query 301 AVLAVMLVYRRRP 313
V A + VYRRRP
Sbjct 301 GVGAGLFVYRRRP 313
>gi|183983301|ref|YP_001851592.1| cobalamin biosynthesis transmembrane protein CobD [Mycobacterium
marinum M]
gi|183176627|gb|ACC41737.1| cobalamin biosynthesis transmembrane protein CobD [Mycobacterium
marinum M]
Length=313
Score = 410 bits (1054), Expect = 1e-112, Method: Compositional matrix adjust.
Identities = 239/313 (77%), Positives = 263/313 (85%), Gaps = 0/313 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
+ AS Q R VGVL+G L D+V GDP+RGHPVA+FGR AA LE+ +YRD R AGAVHVG+
Sbjct 1 MVASARQARTVGVLVGYLADLVLGDPQRGHPVAVFGRLAAGLERASYRDTRAAGAVHVGV 60
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVG VGLLGA L R GR W VAATA ATW +LGGTSL RTGR++++LL+R D++AARRL
Sbjct 61 LVGGVGLLGAVLGRPAGRPWSVAATAMATWVSLGGTSLVRTGREMAELLDRGDLDAARRL 120
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDPAQL P LTRAALESVAENT+DAQV PLLWAA GVPAVL YRA+NTLD+M
Sbjct 121 LPSLCGRDPAQLDVPDLTRAALESVAENTSDAQVAPLLWAAVGGVPAVLVYRAVNTLDAM 180
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHP 240
+GYRSPRYLRFGWAAARLDD ANY GAR TA LVV+CAP+VGGS GA+RAWRRDAARHP
Sbjct 181 VGYRSPRYLRFGWAAARLDDLANYFGARVTAGLVVLCAPLVGGSALGAMRAWRRDAARHP 240
Query 241 SPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
SPNAGVVEA FAGAL VRLGGPTRYH ELQIRPTLGDG P V DLRRAV LSR VQA A
Sbjct 241 SPNAGVVEATFAGALRVRLGGPTRYHFELQIRPTLGDGGQPTVDDLRRAVTLSRAVQAAA 300
Query 301 AVLAVMLVYRRRP 313
AV A + VYRRRP
Sbjct 301 AVGAGLFVYRRRP 313
>gi|118466705|ref|YP_881412.1| cobalamin biosynthesis protein [Mycobacterium avium 104]
gi|118167992|gb|ABK68889.1| cobalamin biosynthesis protein CobD [Mycobacterium avium 104]
Length=314
Score = 381 bits (978), Expect = 8e-104, Method: Compositional matrix adjust.
Identities = 219/311 (71%), Positives = 244/311 (79%), Gaps = 5/311 (1%)
Query 8 TRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGL 67
T VGVLIG L D GDP+RGHPVALFGRAAA LE ++YRDGRVAGA+HV + +GAVGL
Sbjct 4 THPVGVLIGYLADRALGDPRRGHPVALFGRAAAGLENLSYRDGRVAGALHVAVSIGAVGL 63
Query 68 LGAALQRLPGRS---WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSL 124
LG A+ R R+ W +AATA A W GG+SL RTG +++LL+R DV+AARRLLPSL
Sbjct 64 LGLAVHRAAARAGPRWSIAATAAAGWVCSGGSSLTRTGLAMAELLQRGDVDAARRLLPSL 123
Query 125 CGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYR 184
CGRDPA L GL RAALESVAENT+DAQV PLLWAA+ GVPAVL YR INTLD+MIG+R
Sbjct 124 CGRDPAALDAAGLARAALESVAENTSDAQVAPLLWAAAGGVPAVLAYRGINTLDAMIGHR 183
Query 185 SPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNA 244
SPRYLRFGWAAA+LDD ANY AR TA L V+ APVVGGSP GA RAWRRDAARHPSPNA
Sbjct 184 SPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVVGGSPSGAARAWRRDAARHPSPNA 243
Query 245 GVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS--RVVQAGAAV 302
GVVEAAFAGAL VRLGGPT+Y H+LQIRPTLG GR P V DLRRAV LS A A
Sbjct 244 GVVEAAFAGALGVRLGGPTQYRHQLQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVALA 303
Query 303 LAVMLVYRRRP 313
++ YRRRP
Sbjct 304 AGLLAAYRRRP 314
>gi|336461847|gb|EGO40703.1| cobalamin biosynthesis protein cobD/CbiB [Mycobacterium avium
subsp. paratuberculosis S397]
Length=314
Score = 379 bits (973), Expect = 4e-103, Method: Compositional matrix adjust.
Identities = 219/311 (71%), Positives = 242/311 (78%), Gaps = 5/311 (1%)
Query 8 TRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGL 67
T +GVLIG L D GDP+RGHPVALFGRA A LE +TYRDGRVAGA+HVG+ +GAVGL
Sbjct 4 THPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAVGL 63
Query 68 LGAALQRLPGRS---WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSL 124
LG A+ R R+ W +AATA A W GGTSL RTG +++LL+R DV+AARRLLPSL
Sbjct 64 LGLAVHRAAARAGPRWSIAATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLPSL 123
Query 125 CGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYR 184
CGRDPA L GL RAALESVAENT+DAQV PLL AA+ GVPAVL YR INTLD+MIG+R
Sbjct 124 CGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAAGGVPAVLAYRGINTLDAMIGHR 183
Query 185 SPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNA 244
SPRYLRFGWAAA+LDD ANY AR TA L V+ APV GGSP GA RAWRRDAARHPSPNA
Sbjct 184 SPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSPNA 243
Query 245 GVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS--RVVQAGAAV 302
GVVEAAFAGAL VRLGGPT+Y HELQIRPTLG GR P V DLRRAV LS A A
Sbjct 244 GVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVALA 303
Query 303 LAVMLVYRRRP 313
++ YRRRP
Sbjct 304 AGLLAAYRRRP 314
>gi|41408085|ref|NP_960921.1| cobalamin biosynthesis protein [Mycobacterium avium subsp. paratuberculosis
K-10]
gi|41396440|gb|AAS04304.1| CobD [Mycobacterium avium subsp. paratuberculosis K-10]
Length=313
Score = 379 bits (973), Expect = 4e-103, Method: Compositional matrix adjust.
Identities = 219/311 (71%), Positives = 242/311 (78%), Gaps = 5/311 (1%)
Query 8 TRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGL 67
T +GVLIG L D GDP+RGHPVALFGRA A LE +TYRDGRVAGA+HVG+ +GAVGL
Sbjct 3 THPLGVLIGYLADRALGDPRRGHPVALFGRAVAGLENLTYRDGRVAGALHVGVSIGAVGL 62
Query 68 LGAALQRLPGRS---WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSL 124
LG A+ R R+ W +AATA A W GGTSL RTG +++LL+R DV+AARRLLPSL
Sbjct 63 LGLAVHRAAARAGPRWSIAATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLPSL 122
Query 125 CGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYR 184
CGRDPA L GL RAALESVAENT+DAQV PLL AA+ GVPAVL YR INTLD+MIG+R
Sbjct 123 CGRDPAALDAAGLARAALESVAENTSDAQVAPLLLAAAGGVPAVLAYRGINTLDAMIGHR 182
Query 185 SPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNA 244
SPRYLRFGWAAA+LDD ANY AR TA L V+ APV GGSP GA RAWRRDAARHPSPNA
Sbjct 183 SPRYLRFGWAAAKLDDIANYPAARVTASLTVLLAPVAGGSPSGAARAWRRDAARHPSPNA 242
Query 245 GVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS--RVVQAGAAV 302
GVVEAAFAGAL VRLGGPT+Y HELQIRPTLG GR P V DLRRAV LS A A
Sbjct 243 GVVEAAFAGALGVRLGGPTQYGHELQIRPTLGAGREPTVTDLRRAVRLSAAVQAAAVALA 302
Query 303 LAVMLVYRRRP 313
++ YRRRP
Sbjct 303 AGLLAAYRRRP 313
>gi|342857257|ref|ZP_08713913.1| cobalamin biosynthesis protein [Mycobacterium colombiense CECT
3035]
gi|342134590|gb|EGT87756.1| cobalamin biosynthesis protein [Mycobacterium colombiense CECT
3035]
Length=308
Score = 373 bits (958), Expect = 2e-101, Method: Compositional matrix adjust.
Identities = 220/306 (72%), Positives = 242/306 (80%), Gaps = 7/306 (2%)
Query 15 IGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQR 74
IG L D GDP+RGHPVALFGRAAA LE + YRDGRVAGA HV L+ A+GLLG +++R
Sbjct 3 IGYLADRALGDPRRGHPVALFGRAAAALENVIYRDGRVAGAFHVAALLAALGLLGLSVER 62
Query 75 LPGR---SWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQ 131
R +W +AAT ATW ALGGTSLARTG +S+ LER DVEAAR LLPSLCGRDPA
Sbjct 63 AAARRGPAWTIAATGAATWVALGGTSLARTGLDMSERLERGDVEAARGLLPSLCGRDPAS 122
Query 132 LGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRF 191
L GL RAALES+AENT+DAQV PLLWAA+ GVPAVL YR INTLDSM+GYRSPRYLRF
Sbjct 123 LDEAGLARAALESIAENTSDAQVAPLLWAAAGGVPAVLVYRGINTLDSMVGYRSPRYLRF 182
Query 192 GWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAF 251
GWAAARLDD ANY AR TA L V+ AP+VGGSP GA RAWRRDAARHPSPNAGVVEAAF
Sbjct 183 GWAAARLDDVANYAAARVTASLAVLLAPLVGGSPSGAARAWRRDAARHPSPNAGVVEAAF 242
Query 252 AGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQA----GAAVLAVML 307
AGAL VRLGGPT+Y HELQIRPTLGDGR+P V DLRRAV LS +VQ A + +
Sbjct 243 AGALGVRLGGPTQYRHELQIRPTLGDGRAPAVTDLRRAVALSALVQTGAAVAAGLAVCLS 302
Query 308 VYRRRP 313
YRRRP
Sbjct 303 GYRRRP 308
>gi|254774913|ref|ZP_05216429.1| cobalamin biosynthesis protein [Mycobacterium avium subsp. avium
ATCC 25291]
Length=306
Score = 372 bits (955), Expect = 4e-101, Method: Compositional matrix adjust.
Identities = 214/306 (70%), Positives = 239/306 (79%), Gaps = 5/306 (1%)
Query 13 VLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAAL 72
+LIG L D GDP+RGHPVALFGRAAA LE ++YRDGRVAGA+HVG+ +GAVGLLG A+
Sbjct 1 MLIGYLADRALGDPRRGHPVALFGRAAAGLENLSYRDGRVAGALHVGVSIGAVGLLGLAV 60
Query 73 QRLPGRS---WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDP 129
R+ W +AATA A W GGTSL RTG +++LL+R DV+AARRLLPSLCGRDP
Sbjct 61 HLAAARAGPRWSIAATAAAGWVCSGGTSLTRTGLAMAELLQRGDVDAARRLLPSLCGRDP 120
Query 130 AQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYL 189
A L GL RAALESVAENT+DAQV PLLWAA+ GVPAVL YR INTLD+MIG+RSP YL
Sbjct 121 AALDSAGLARAALESVAENTSDAQVAPLLWAAAGGVPAVLAYRGINTLDAMIGHRSPSYL 180
Query 190 RFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEA 249
RFGWAAA+LDD ANY AR TA L V+ APVVGGSP GA RAWRRDAARHPSPNAGVVEA
Sbjct 181 RFGWAAAKLDDIANYPAARVTASLTVLLAPVVGGSPSGAARAWRRDAARHPSPNAGVVEA 240
Query 250 AFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS--RVVQAGAAVLAVML 307
AFAGAL VRLGGPT+Y H+LQIRPTLG GR P DLRRAV LS A A ++
Sbjct 241 AFAGALGVRLGGPTQYRHQLQIRPTLGAGREPTXTDLRRAVRLSAAVQAAAVALAAGLLA 300
Query 308 VYRRRP 313
YRRRP
Sbjct 301 AYRRRP 306
>gi|118471499|ref|YP_888588.1| cobalamin biosynthesis protein [Mycobacterium smegmatis str.
MC2 155]
gi|118172786|gb|ABK73682.1| cobalamin biosynthesis protein CobD [Mycobacterium smegmatis
str. MC2 155]
Length=318
Score = 350 bits (899), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 190/277 (69%), Positives = 221/277 (80%), Gaps = 3/277 (1%)
Query 18 LLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQRLPG 77
L D+VF DP+RGHPVALFG AA+LE++TYRD R AG H GLL+ + LLG A QR
Sbjct 14 LADLVFADPRRGHPVALFGSGAARLERLTYRDNRAAGLAHTGLLLAGLALLGVAAQR--- 70
Query 78 RSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPGL 137
R+ P A AT+ ALGGTSL R G +++DLL DDV+ AR L+PSLCGRDPA L GL
Sbjct 71 RNRPHLGLAAATFVALGGTSLNRVGDRMADLLAADDVDGARALVPSLCGRDPASLDAAGL 130
Query 138 TRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAAR 197
TRA +ES+AENT+DAQV PLLWAA +GVP VL YR NTLD+MIG+RSPRYLRFGWAAAR
Sbjct 131 TRATVESLAENTSDAQVAPLLWAAVAGVPGVLVYRGANTLDAMIGHRSPRYLRFGWAAAR 190
Query 198 LDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALDV 257
DD NYV AR T +LV +CAPVVGGSP A+RAWRRDAARHPSPNAGVVEA+FAGAL V
Sbjct 191 FDDVLNYVPARVTGLLVAVCAPVVGGSPVAALRAWRRDAARHPSPNAGVVEASFAGALGV 250
Query 258 RLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSR 294
RLGGPT+Y H+L+IRP+LGDGR+P+V D+ RAV LSR
Sbjct 251 RLGGPTQYAHQLEIRPSLGDGRAPEVEDVGRAVRLSR 287
>gi|315443834|ref|YP_004076713.1| adenosylcobinamide-phosphate synthase [Mycobacterium sp. Spyr1]
gi|315262137|gb|ADT98878.1| adenosylcobinamide-phosphate synthase [Mycobacterium sp. Spyr1]
Length=340
Score = 343 bits (881), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/292 (65%), Positives = 217/292 (75%), Gaps = 3/292 (1%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RA G+ + D+VFGDP+RGHPVALFG AAA +E+ TY D R AG VH L+ AVG+
Sbjct 4 RASGIAAAVVADIVFGDPRRGHPVALFGSAAAGVERRTYADTRGAGVVHTASLLAAVGVA 63
Query 69 GAALQRLP---GRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
G +R G A+ A AT+ A GGT+L RTG Q++ LL D++ AR LLPSLC
Sbjct 64 GVLAERAGRRRGAVAEAASVAAATFVAAGGTTLCRTGEQMAALLRGGDLDGARALLPSLC 123
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ L PGL RAALES+AENT+DAQ+ PL+WAA+ G PAVL YRA NTLD+MIG RS
Sbjct 124 GRDPSALDAPGLARAALESIAENTSDAQIGPLVWAAAGGTPAVLVYRAANTLDAMIGSRS 183
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
PRY RFGWAAAR DD N V AR T +LVV CAPVVGGSP A RAWRRDA HPSPNAG
Sbjct 184 PRYARFGWAAARFDDLLNLVPARLTGLLVVACAPVVGGSPAAAWRAWRRDAGDHPSPNAG 243
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQ 297
V EA+FAGAL VRLGGPT+Y HEL+IRPTLGDGR+P V DL RAV LSR VQ
Sbjct 244 VAEASFAGALGVRLGGPTQYAHELEIRPTLGDGRAPDVDDLVRAVRLSRAVQ 295
>gi|145223473|ref|YP_001134151.1| cobalamin biosynthesis protein [Mycobacterium gilvum PYR-GCK]
gi|145215959|gb|ABP45363.1| adenosylcobinamide-phosphate synthase [Mycobacterium gilvum PYR-GCK]
Length=340
Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 191/292 (66%), Positives = 216/292 (74%), Gaps = 3/292 (1%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLL---VGAV 65
RA G+ + D+VFGDP+RGHPVALFG AAA LE+ TY D R AG VH L VGA
Sbjct 4 RASGIAAAVVADLVFGDPRRGHPVALFGSAAAGLERRTYADARGAGVVHTAALLTAVGAA 63
Query 66 GLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
G+L R G A+ A AT+ A GGT+L RTG Q++ LL D++ AR LLPSLC
Sbjct 64 GVLAERTGRRRGAVAEAASVAAATFVAAGGTTLCRTGEQMAGLLRGGDLDGARALLPSLC 123
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ L PGL RAALES+AENT+DAQ+ PL+WAA+ G PAVL YRA NTLD+MIG RS
Sbjct 124 GRDPSALYAPGLARAALESIAENTSDAQIGPLVWAAAGGTPAVLVYRAANTLDAMIGSRS 183
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
RY RFGWAAAR DD N V AR T +LVV CAPVVGGSP A RAWRRDA HPSPNAG
Sbjct 184 SRYARFGWAAARFDDLLNLVPARLTGLLVVACAPVVGGSPAAAWRAWRRDAGDHPSPNAG 243
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQ 297
VVEA+FAGAL VRLGGPT+Y HEL+IRPTLGDGR+P V DL RAV LSR VQ
Sbjct 244 VVEASFAGALGVRLGGPTQYAHELEIRPTLGDGRAPDVDDLVRAVRLSRAVQ 295
>gi|240170067|ref|ZP_04748726.1| cobalamin biosynthesis protein [Mycobacterium kansasii ATCC 12478]
Length=235
Score = 338 bits (866), Expect = 9e-91, Method: Compositional matrix adjust.
Identities = 174/235 (75%), Positives = 195/235 (83%), Gaps = 0/235 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
+ AS Q R GVL+G L D+ GDPKRGHPVA+FG+ AAKLEQ +YRD ++AG HVG
Sbjct 1 MVASKRQARIAGVLVGYLADLALGDPKRGHPVAVFGQLAAKLEQTSYRDSKLAGMTHVGA 60
Query 61 LVGAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRL 120
LVGAVGLLGA LQR PGR VAATATATW +LGG SLARTGR +++LLE D+EAARRL
Sbjct 61 LVGAVGLLGAVLQRGPGRVRSVAATATATWVSLGGMSLARTGRAMAELLECGDLEAARRL 120
Query 121 LPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSM 180
LPSLCGRDP L PGLTRAALESVAENT+DA+V PLLWA G PAVL YRA+NTLDSM
Sbjct 121 LPSLCGRDPGGLDLPGLTRAALESVAENTSDAEVAPLLWATIGGAPAVLIYRAVNTLDSM 180
Query 181 IGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRD 235
+GYRSPRYLRFGWAAARLDD ANY GARATA+LVV+CAP+ GGSP GA+RAWRRD
Sbjct 181 VGYRSPRYLRFGWAAARLDDVANYAGARATAMLVVLCAPLAGGSPLGALRAWRRD 235
>gi|108800315|ref|YP_640512.1| cobalamin biosynthesis protein [Mycobacterium sp. MCS]
gi|119869443|ref|YP_939395.1| cobalamin biosynthesis protein [Mycobacterium sp. KMS]
gi|126435938|ref|YP_001071629.1| cobalamin biosynthesis protein [Mycobacterium sp. JLS]
gi|108770734|gb|ABG09456.1| adenosylcobinamide-phosphate synthase [Mycobacterium sp. MCS]
gi|119695532|gb|ABL92605.1| adenosylcobinamide-phosphate synthase [Mycobacterium sp. KMS]
gi|126235738|gb|ABN99138.1| adenosylcobinamide-phosphate synthase [Mycobacterium sp. JLS]
Length=344
Score = 335 bits (858), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 181/277 (66%), Positives = 211/277 (77%), Gaps = 2/277 (0%)
Query 20 DVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQRLPGRS 79
D + GDP+RGHPVA FGRAAA+LE+I+Y D R AGA+H G L+ A+ + GA QR RS
Sbjct 20 DALLGDPRRGHPVAGFGRAAAQLERISYADSRRAGALHTGALLSALAVAGATAQRAARRS 79
Query 80 -WPVAATATATWAAL-GGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPGL 137
W A A GGTSL R G ++S++L+ D+EA R LLPSLCGRDP+ L GL
Sbjct 80 PWATTALTAAATFVAAGGTSLCRVGDRLSEVLDTGDIEAGRDLLPSLCGRDPSVLDAGGL 139
Query 138 TRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAAR 197
TRAA+ES+AENT+DAQV PL+WAA +GVP +L YR NTLD+MIG RSPRY RFGWAAAR
Sbjct 140 TRAAVESIAENTSDAQVAPLVWAAVAGVPGLLVYRGANTLDAMIGNRSPRYARFGWAAAR 199
Query 198 LDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALDV 257
LDD NY+ AR T +L +CAPVVGGSP A+ AWRRDA RHPSPNAGV EA FAGAL V
Sbjct 200 LDDALNYLPARLTGLLAALCAPVVGGSPVAAMHAWRRDAHRHPSPNAGVAEATFAGALGV 259
Query 258 RLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSR 294
RLGGPT+Y HEL+IRPTLGDGR+P ADLRRAV LSR
Sbjct 260 RLGGPTQYAHELEIRPTLGDGRAPVPADLRRAVRLSR 296
>gi|120404592|ref|YP_954421.1| cobalamin biosynthesis protein [Mycobacterium vanbaalenii PYR-1]
gi|119957410|gb|ABM14415.1| adenosylcobinamide-phosphate synthase [Mycobacterium vanbaalenii
PYR-1]
Length=317
Score = 333 bits (853), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 193/305 (64%), Positives = 223/305 (74%), Gaps = 3/305 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
R +G+ G D+ FGDP+RGHPVALFG AAA LE+ TY D R AGA+H L+ VG+
Sbjct 4 RGIGMAAGVAADLAFGDPRRGHPVALFGGAAAALERYTYADDRRAGALHTAALLTGVGVA 63
Query 69 GAALQ---RLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
A +Q R G A A AT+ A GGT+L+RTG Q+ LL DVE ARRLLPSLC
Sbjct 64 AAVVQQAGRRRGVPAEAACVAAATFIAAGGTTLSRTGEQMVRLLRASDVEGARRLLPSLC 123
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ L GLTRAALES+AENT+DAQ+ PL+WAA G PAVL YRA NTLD+MIG RS
Sbjct 124 GRDPSVLDAAGLTRAALESIAENTSDAQIGPLVWAAVGGAPAVLVYRAANTLDAMIGNRS 183
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
PRY RFGWAAAR DD N AR T VL V+CAPVVGGSP A R W+RDA +HPSPNAG
Sbjct 184 PRYARFGWAAARFDDLLNLAPARLTGVLAVVCAPVVGGSPAEAWRVWQRDARKHPSPNAG 243
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAV 305
V EA+FAGAL VRLGGPT+Y +EL+IRPTLGDGR+P V DL RAV LSR VQ AAV+A+
Sbjct 244 VAEASFAGALGVRLGGPTQYAYELEIRPTLGDGRTPDVDDLARAVRLSRAVQLLAAVVAI 303
Query 306 MLVYR 310
+ R
Sbjct 304 SVACR 308
>gi|54023595|ref|YP_117837.1| cobalamin biosynthesis protein [Nocardia farcinica IFM 10152]
gi|54015103|dbj|BAD56473.1| putative cobalamin biosynthesis protein [Nocardia farcinica IFM
10152]
Length=305
Score = 312 bits (799), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 184/289 (64%), Positives = 209/289 (73%), Gaps = 5/289 (1%)
Query 5 TWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGA 64
T ++ A G+++G LD GDP+R HPVA FG AA LE +TY D R AG VH + VGA
Sbjct 3 TGKSTAAGLVLGFALDRALGDPRRWHPVAGFGSAALALESVTYADRRTAGLVHESVAVGA 62
Query 65 VGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSL 124
V G L+R VAATA ATW ALGG SLARTGR ++ LE DV+ AR LLPSL
Sbjct 63 VVGFGLVLRR-----GGVAATALATWTALGGRSLARTGRAMARRLESGDVDGARALLPSL 117
Query 125 CGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYR 184
CGRDPA L GL RAALES+AENT+DA V PL+W A +GVP +LGYRAINTLD+MIGYR
Sbjct 118 CGRDPAVLDADGLARAALESIAENTSDAAVGPLVWGAIAGVPGLLGYRAINTLDAMIGYR 177
Query 185 SPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNA 244
RY RFGWAAAR DD AN + AR T +L APVVGG PR +RAWRRDA +HPSPNA
Sbjct 178 DERYRRFGWAAARTDDVANLLPARLTGLLTAALAPVVGGRPRAVLRAWRRDAGKHPSPNA 237
Query 245 GVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS 293
GV EAA AGAL VRLGG TRY H ++RPTLGDG +P VADLRRAV LS
Sbjct 238 GVAEAAMAGALGVRLGGRTRYRHGTELRPTLGDGPAPTVADLRRAVRLS 286
>gi|325677008|ref|ZP_08156679.1| cobalamin biosynthesis protein D [Rhodococcus equi ATCC 33707]
gi|325552170|gb|EGD21861.1| cobalamin biosynthesis protein D [Rhodococcus equi ATCC 33707]
Length=328
Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 181/303 (60%), Positives = 214/303 (71%), Gaps = 3/303 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RA G+++G L D GDP+R HPVA FG AA LE+ TY D R++GA H +LVGA L
Sbjct 14 RAAGLVLGYLADRALGDPRRLHPVAGFGLAAMALEKRTYADSRLSGATHTAILVGATAAL 73
Query 69 GAALQRLPGRS-W--PVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
G +R R+ W A TA ATW LGGTSLA TGR ++ L+ DD+E+AR LLPSLC
Sbjct 74 GVLAERSGRRAGWVGQTAVTAAATWTVLGGTSLADTGRTMARHLDADDLESARALLPSLC 133
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ L GL RA+LESVAENT+DA V L W A +GVP +L YRA NTLD+MIGYR+
Sbjct 134 GRDPSVLDADGLARASLESVAENTSDATVGALFWGAVAGVPGLLAYRASNTLDAMIGYRN 193
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
RY RFGWAAAR DD N AR L V APVVGGSPR AV+AWRRDAA HPSPNAG
Sbjct 194 DRYGRFGWAAARWDDVVNLAPARLAGALTVAAAPVVGGSPRAAVQAWRRDAAAHPSPNAG 253
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAV 305
V EA+ AGAL V+LGG T Y H +++RPTLG G +P +ADL RA LS VQAGAA++A
Sbjct 254 VAEASAAGALGVQLGGRTEYAHGVEMRPTLGSGPAPVIADLERAARLSSAVQAGAALVAA 313
Query 306 MLV 308
+ V
Sbjct 314 LTV 316
>gi|312140245|ref|YP_004007581.1| cobalamin biosynthesis protein cobd [Rhodococcus equi 103S]
gi|311889584|emb|CBH48901.1| cobalamin biosynthesis protein CobD [Rhodococcus equi 103S]
Length=328
Score = 311 bits (796), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 181/303 (60%), Positives = 214/303 (71%), Gaps = 3/303 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RA G+ +G L D GDP+R HPVA FG AA LE+ TY D R++GA H +LVGA L
Sbjct 14 RAAGLALGYLADRALGDPRRLHPVAGFGLAAMALEKRTYADSRLSGATHTAILVGATAAL 73
Query 69 GAALQRLPGRS-W--PVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
G +R R+ W A TA ATW LGGTSLA TGR ++ L+ DD+E+AR LLPSLC
Sbjct 74 GVLAERSGRRAGWVGQTAVTAAATWTVLGGTSLADTGRTMARHLDADDLESARALLPSLC 133
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ L GL RA+LESVAENT+DA V L W A +GVP +L YRA NTLD+MIGYR+
Sbjct 134 GRDPSVLDADGLARASLESVAENTSDATVGALFWGAVAGVPGLLAYRASNTLDAMIGYRN 193
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
RY RFGWAAAR DD N AR L V APVVGGSPR AV+AWRRDAA HPSPNAG
Sbjct 194 DRYGRFGWAAARWDDVVNLAPARLAGALTVAAAPVVGGSPRAAVQAWRRDAAAHPSPNAG 253
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAV 305
V EA+ AGAL V+LGG T Y H +++RPTLG G +P +ADL+RA LS VQAGAA++A
Sbjct 254 VAEASAAGALGVQLGGRTEYAHGVEMRPTLGSGPAPVIADLQRAARLSSAVQAGAALVAA 313
Query 306 MLV 308
+ V
Sbjct 314 LTV 316
>gi|226307152|ref|YP_002767112.1| adenosylcobinamide-phosphate synthase [Rhodococcus erythropolis
PR4]
gi|226186269|dbj|BAH34373.1| putative adenosylcobinamide-phosphate synthase [Rhodococcus erythropolis
PR4]
Length=339
Score = 307 bits (786), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 172/308 (56%), Positives = 205/308 (67%), Gaps = 7/308 (2%)
Query 4 STWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVG 63
S + RA G+L+G + D F DP R HPVA FG AA L++++YRD R AG +HV +L+
Sbjct 10 SRFNARAAGLLLGFVADRAFADPGRFHPVAGFGTAAIALQKMSYRDSRAAGTLHVAVLLA 69
Query 64 A---VGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERD----DVEA 116
+GL A R G TA ATWA LGGTSLARTG ++ LE D+
Sbjct 70 GTAGLGLTAEAASRRAGWVAVTGTTAIATWAVLGGTSLARTGIDMAARLEASQVDGDLTT 129
Query 117 ARRLLPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINT 176
AR LLPSLCGRDP+ LG GLTRAALESVAENT+DA V + W A +GVP + YRA NT
Sbjct 130 ARELLPSLCGRDPSVLGEEGLTRAALESVAENTSDATVGAVFWGAIAGVPGLFVYRAANT 189
Query 177 LDSMIGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDA 236
LD+MIGYRS +YLRFGWAAAR DD N V AR T L CAPVVGGS + ++ AW+RDA
Sbjct 190 LDAMIGYRSEKYLRFGWAAARFDDLVNIVPARLTGALTAACAPVVGGSVQESLAAWKRDA 249
Query 237 ARHPSPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVV 296
A HPSPNAGV EA+ AGAL + LGG T Y H +++RP LG G P DLRRA LS V
Sbjct 250 AAHPSPNAGVAEASAAGALGISLGGRTEYAHGVEMRPVLGRGPVPTPNDLRRAARLSSAV 309
Query 297 QAGAAVLA 304
Q AAV++
Sbjct 310 QISAAVVS 317
>gi|271968634|ref|YP_003342830.1| adenosylcobinamide-phosphate synthase [Streptosporangium roseum
DSM 43021]
gi|270511809|gb|ACZ90087.1| adenosylcobinamide-phosphate synthase [Streptosporangium roseum
DSM 43021]
Length=369
Score = 304 bits (778), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 164/292 (57%), Positives = 202/292 (70%), Gaps = 0/292 (0%)
Query 3 ASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLV 62
A++ + A+G+L G LD V DP+RGHPVALFGRAAA LE+ Y D R GA++ L V
Sbjct 50 AASRRAEALGMLAGVALDAVLADPRRGHPVALFGRAAAALERRVYGDARTDGALYTVLCV 109
Query 63 GAVGLLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLP 122
G LLG A+ R+ +A ATW+ LGGT+L R G +++LLE DD+ ARR L
Sbjct 110 GPAALLGLAVTRVENPLARGVLSAVATWSVLGGTTLGREGVAMAELLEADDLTGARRRLS 169
Query 123 SLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIG 182
LCGRDP+ L PGL RA +ES+AENT+DA V PL W A +GVP +L YRAINTLD+M+G
Sbjct 170 HLCGRDPSLLQTPGLARATVESIAENTSDAVVAPLFWGAVAGVPGLLAYRAINTLDAMVG 229
Query 183 YRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSP 242
+RS RY RFGWA+ARLDD AN+V AR T VL + AP+ GGS R AV R+D RHPSP
Sbjct 230 HRSSRYERFGWASARLDDVANFVPARITGVLTALGAPLTGGSVRRAVAVLRKDGHRHPSP 289
Query 243 NAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSR 294
NAG EAAFAGALDV LGG Y ++ RP +GDG P V D+RR+V L+R
Sbjct 290 NAGRCEAAFAGALDVTLGGINVYGDRVEHRPEMGDGPKPSVKDIRRSVRLAR 341
>gi|111018201|ref|YP_701173.1| cobalamin biosynthesis protein [Rhodococcus jostii RHA1]
gi|110817731|gb|ABG93015.1| probable cobalamin biosynthesis protein [Rhodococcus jostii RHA1]
Length=355
Score = 301 bits (771), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 175/294 (60%), Positives = 204/294 (70%), Gaps = 3/294 (1%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RA G+L+G D VF DP R HPVA FGR A LE++TYRD R AG +HV +LVG L
Sbjct 39 RAAGLLLGFAGDRVFADPARWHPVAGFGRTAMALEKVTYRDSRPAGILHVAVLVGGAAGL 98
Query 69 GAALQRLPGRS-WP--VAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
G A R+ R WP VA TA ATWA LGGTSL RTG ++ LE DD+ AAR LLPSLC
Sbjct 99 GVAATRMARRGGWPGEVAGTAVATWAVLGGTSLGRTGSSMAAHLEVDDLAAARALLPSLC 158
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ LG GLTRA LESVAENT+D+ V +W A +G+P + YRA NTLD+M+GYRS
Sbjct 159 GRDPSVLGVDGLTRATLESVAENTSDSAVGAFVWGAVAGIPGLFVYRASNTLDAMVGYRS 218
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
P+Y FGWAAAR DD N + AR T L V+ AP VGGSP A AWRRDA++HPSPNAG
Sbjct 219 PKYRNFGWAAARWDDVLNLLPARLTGALSVMAAPAVGGSPNEAWEAWRRDASQHPSPNAG 278
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAG 299
V EA+ AGAL + LGG T Y H +++RP LG G SP DL RAV LS VQ G
Sbjct 279 VAEASAAGALGISLGGRTEYAHGVEMRPVLGSGPSPLPVDLDRAVRLSAAVQVG 332
>gi|302529227|ref|ZP_07281569.1| cobalamin biosynthesis protein CobD [Streptomyces sp. AA4]
gi|302438122|gb|EFL09938.1| cobalamin biosynthesis protein CobD [Streptomyces sp. AA4]
Length=322
Score = 298 bits (762), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 166/289 (58%), Positives = 198/289 (69%), Gaps = 6/289 (2%)
Query 10 AVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAV---G 66
A G++ G D FGDP+RGHPVA FG AA +LE+ + D + GA H + G+V G
Sbjct 9 AAGLIAGYAADAWFGDPRRGHPVAAFGTAAGQLERWWWADSKPRGAAHAAVCAGSVVGFG 68
Query 67 LLG-AALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
LL A + PG + + TA ATWA LGG LA GR+++ LLE ++ AAR+ L LC
Sbjct 69 LLAEKAARNRPGARFVL--TAAATWAVLGGRGLAAEGREMARLLESGELPAARQRLSHLC 126
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
RD L LTRAA ES+AENT+DA V PLLW A +GVP +LGYRA+NTLD+MIGYRS
Sbjct 127 ARDATGLDSAELTRAATESIAENTSDAVVAPLLWGAVAGVPGLLGYRAVNTLDAMIGYRS 186
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
PR+ FGW AAR DDWAN V AR AVL + AP+ GG R A RAWRRD + HPSPNAG
Sbjct 187 PRHRNFGWFAARTDDWANLVPARVGAVLTAVTAPLAGGHTRSAWRAWRRDGSAHPSPNAG 246
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSR 294
VEAAFAGALD+RLGG YH E++ R TLGDGR P +DLRRAV LSR
Sbjct 247 QVEAAFAGALDIRLGGTNTYHGEVERRSTLGDGRPPGASDLRRAVRLSR 295
>gi|169628986|ref|YP_001702635.1| cobalamin biosynthesis protein CobD [Mycobacterium abscessus
ATCC 19977]
gi|169240953|emb|CAM61981.1| Probable cobalamin biosynthesis protein CobD [Mycobacterium abscessus]
Length=314
Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 168/306 (55%), Positives = 204/306 (67%), Gaps = 2/306 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RAVG+ +G LD F DP+R HPVA FG+AAA LE +YRD ++AG H L+ AV
Sbjct 7 RAVGIALGYALDRCFADPQRFHPVAGFGQAAAALEAYSYRDSKLAGTAHTAALLVAVAAT 66
Query 69 GAALQRLPGRSWPVAATATATWAA--LGGTSLARTGRQISDLLERDDVEAARRLLPSLCG 126
G +R RS TA LGGTSL R G ++S+ L DD++ AR LLPSLCG
Sbjct 67 GWVAERATHRSATATVAVTAVATWATLGGTSLIRVGAEMSERLYDDDIDEARALLPSLCG 126
Query 127 RDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSP 186
RDP LG G+ RA ES+AENT+DA PL+WAA +GVP VL YRA NTLD+MIG++S
Sbjct 127 RDPKLLGVGGIARATTESLAENTSDAHTGPLVWAALAGVPGVLAYRAANTLDAMIGHKSA 186
Query 187 RYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGV 246
RYLRFGWAAARLDD N + AR TA+ + AP +GGS ++R RD HPSPNAGV
Sbjct 187 RYLRFGWAAARLDDLMNVLPARITALATALTAPFLGGSAVASLRVCLRDGRSHPSPNAGV 246
Query 247 VEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAVM 306
EAAFAGAL VRLGGP RY + ++RP LGDG P+V D+ AV LSR VQ AV+AV+
Sbjct 247 AEAAFAGALGVRLGGPLRYPYGEEVRPVLGDGAPPRVGDMHEAVRLSRAVQNVTAVVAVL 306
Query 307 LVYRRR 312
R+R
Sbjct 307 ATLRQR 312
>gi|343924125|ref|ZP_08763688.1| cobalamin biosynthesis protein CobD [Gordonia alkanivorans NBRC
16433]
gi|343765930|dbj|GAA10614.1| cobalamin biosynthesis protein CobD [Gordonia alkanivorans NBRC
16433]
Length=325
Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 168/290 (58%), Positives = 199/290 (69%), Gaps = 4/290 (1%)
Query 8 TRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGL 67
+ A G+++G LLD GDP GHPVA FGR + LE YRD R AGA V + G V
Sbjct 17 STAAGLVVGFLLDEALGDPSTGHPVAGFGRLTSVLEHRMYRDSRAAGAGLVAVAAGGVVG 76
Query 68 LGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGR 127
A VA TA +TW ALGGTSL R G ++D LE DD++AAR L+PSLCGR
Sbjct 77 AAVAASAGRRAPASVALTAASTWIALGGTSLCRVGDAVADALESDDIDAARALIPSLCGR 136
Query 128 DPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPR 187
DP L G+ RAALES+AENT+DA V PL W A +GVP +LGYRA+NTLD+M+GYR+ R
Sbjct 137 DPMSLDEAGICRAALESIAENTSDATVGPLFWGAVAGVPGILGYRAVNTLDAMVGYRNER 196
Query 188 YLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVV 247
Y FGWAAARLDD AN + AR VL+V+ V G+PR A AWRRD+ HPSPNAGVV
Sbjct 197 YRDFGWAAARLDDAANILPARLAGVLIVL----VSGAPRRAAEAWRRDSHAHPSPNAGVV 252
Query 248 EAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQ 297
EAAFAGAL V+LGG T Y H ++ RPTLG G +PK ADLR AV +SR VQ
Sbjct 253 EAAFAGALGVQLGGRTVYPHGVEQRPTLGSGPAPKPADLRAAVTVSRRVQ 302
>gi|134098160|ref|YP_001103821.1| cobalamin biosynthesis protein [Saccharopolyspora erythraea NRRL
2338]
gi|133910783|emb|CAM00896.1| cobalamin biosynthesis protein [Saccharopolyspora erythraea NRRL
2338]
Length=317
Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 157/284 (56%), Positives = 199/284 (71%), Gaps = 2/284 (0%)
Query 23 FGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQRLPGRSWPV 82
GDP+RGHPVA FGR A E++ ++D + AG V+ GLLVG LG R+ RS +
Sbjct 19 IGDPRRGHPVAAFGRVAGAAERLLHQDRKAAGIVYTGLLVGGTAGLGVLAHRVSRRSPVL 78
Query 83 AA--TATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPGLTRA 140
A T ATWA LGG SLA G ++ +L+ +++AARR L +LCGR+ A L G GL RA
Sbjct 79 EAVLTGVATWAVLGGASLADEGTAMARVLDAGEIDAARRRLGNLCGRESANLDGQGLARA 138
Query 141 ALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAARLDD 200
+ESVAENT+DA V PL+W A +GVP ++GYRA NTLD+M+G+RSPR+ FGWA+ARLDD
Sbjct 139 TVESVAENTSDAVVAPLVWGAIAGVPGLIGYRAANTLDAMVGHRSPRHANFGWASARLDD 198
Query 201 WANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALDVRLG 260
N + +R AVL CAPVVGGS GA R WRRDA+ HPSPNAG +EAAFAGAL +RLG
Sbjct 199 ALNLLPSRLAAVLTSACAPVVGGSATGAWRTWRRDASAHPSPNAGQIEAAFAGALQIRLG 258
Query 261 GPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLA 304
G T Y H ++ RP LG+GR+ D+ R+V LSRV+ + VLA
Sbjct 259 GRTVYGHVVEQRPVLGEGRTADAGDVTRSVELSRVIGVVSGVLA 302
>gi|291007561|ref|ZP_06565534.1| cobalamin biosynthesis protein [Saccharopolyspora erythraea NRRL
2338]
Length=311
Score = 292 bits (748), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 157/284 (56%), Positives = 199/284 (71%), Gaps = 2/284 (0%)
Query 23 FGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQRLPGRSWPV 82
GDP+RGHPVA FGR A E++ ++D + AG V+ GLLVG LG R+ RS +
Sbjct 13 IGDPRRGHPVAAFGRVAGAAERLLHQDRKAAGIVYTGLLVGGTAGLGVLAHRVSRRSPVL 72
Query 83 AA--TATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPGLTRA 140
A T ATWA LGG SLA G ++ +L+ +++AARR L +LCGR+ A L G GL RA
Sbjct 73 EAVLTGVATWAVLGGASLADEGTAMARVLDAGEIDAARRRLGNLCGRESANLDGQGLARA 132
Query 141 ALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAARLDD 200
+ESVAENT+DA V PL+W A +GVP ++GYRA NTLD+M+G+RSPR+ FGWA+ARLDD
Sbjct 133 TVESVAENTSDAVVAPLVWGAIAGVPGLIGYRAANTLDAMVGHRSPRHANFGWASARLDD 192
Query 201 WANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALDVRLG 260
N + +R AVL CAPVVGGS GA R WRRDA+ HPSPNAG +EAAFAGAL +RLG
Sbjct 193 ALNLLPSRLAAVLTSACAPVVGGSATGAWRTWRRDASAHPSPNAGQIEAAFAGALQIRLG 252
Query 261 GPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLA 304
G T Y H ++ RP LG+GR+ D+ R+V LSRV+ + VLA
Sbjct 253 GRTVYGHVVEQRPVLGEGRTADAGDVTRSVELSRVIGVVSGVLA 296
>gi|269125538|ref|YP_003298908.1| cobalamin biosynthesis protein CobD [Thermomonospora curvata
DSM 43183]
gi|268310496|gb|ACY96870.1| cobalamin biosynthesis protein CobD [Thermomonospora curvata
DSM 43183]
Length=325
Score = 287 bits (735), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 167/289 (58%), Positives = 197/289 (69%), Gaps = 1/289 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RA+G+L G LD GDP+R HPVA+FGRAAA LE+ Y D + G V+ G LV +
Sbjct 8 RALGLLAGMALDAALGDPRRAHPVAMFGRAAAALERRIYADSKRRGTVYAGTLVAGAAAV 67
Query 69 GAALQRL-PGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGR 127
GA QRL PGR+ VA TA ATW LGGTSL R GR ++ L D+ AAR LP LCGR
Sbjct 68 GALAQRLAPGRTARVALTAVATWTVLGGTSLGREGRAMAAALRAGDLAAARARLPHLCGR 127
Query 128 DPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPR 187
DP L L RA +ESVAENT DA V PL+W A +GVP +L YRA+NTLD+M+G+R+ R
Sbjct 128 DPRHLDVRELARATVESVAENTGDAVVAPLVWGAVAGVPGLLAYRAVNTLDAMVGHRNER 187
Query 188 YLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVV 247
Y RFGWA+ARLDD AN+V AR TA+L CAPV GGS R + RRD A HPSPNAG
Sbjct 188 YGRFGWASARLDDAANWVPARLTALLTAACAPVAGGSGRRSRAVLRRDGAAHPSPNAGRC 247
Query 248 EAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVV 296
EAAFAGAL VRLGG Y ++ RP LGDG P++AD+ RAV LS V
Sbjct 248 EAAFAGALGVRLGGANVYGGRVERRPHLGDGPPPEIADIPRAVRLSAAV 296
>gi|296140409|ref|YP_003647652.1| cobalamin biosynthesis protein CobD [Tsukamurella paurometabola
DSM 20162]
gi|296028543|gb|ADG79313.1| cobalamin biosynthesis protein CobD [Tsukamurella paurometabola
DSM 20162]
Length=310
Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 162/302 (54%), Positives = 200/302 (67%), Gaps = 6/302 (1%)
Query 7 QTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVG 66
R+ + +G L D VFGDP+ HPVA FG AA +E++ Y +V G + +LVG
Sbjct 1 MNRSAELALGVLADEVFGDPRSYHPVAGFGTAAVAVERVMYAPSKVRGIAYTAILVGGAT 60
Query 67 LLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCG 126
LG AL+ +PG ATA TWA +GG L G + LE D AAR LLPSLCG
Sbjct 61 TLGYALRNVPG------ATALGTWAVVGGAGLRGVGSDLGRHLEVGDDTAARGLLPSLCG 114
Query 127 RDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSP 186
RDP+ L G+ RAA ESVAENT+DA V PL W A +G+P +LGYRA NTLD+M+GYR+
Sbjct 115 RDPSVLDVAGMARAATESVAENTSDAAVAPLFWGALAGLPGLLGYRAANTLDAMVGYRND 174
Query 187 RYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGV 246
RY FGWA+ARLDD NY+ AR T + V APVV G+P A+RAWR DAA+HPSPNAGV
Sbjct 175 RYADFGWASARLDDALNYLPARLTGAVTVAAAPVVDGAPSDAIRAWRNDAAKHPSPNAGV 234
Query 247 VEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAVM 306
EA AGAL +RLGG T+Y H ++ RPTLGDGR+P DL RA LSR V+ GA + ++
Sbjct 235 AEATAAGALGLRLGGRTQYAHGVEQRPTLGDGRAPGPGDLARAAALSRTVELGALAVTIL 294
Query 307 LV 308
V
Sbjct 295 AV 296
>gi|297198772|ref|ZP_06916169.1| cobalamin biosynthesis protein CobD [Streptomyces sviceus ATCC
29083]
gi|297147202|gb|EFH28527.1| cobalamin biosynthesis protein CobD [Streptomyces sviceus ATCC
29083]
Length=313
Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 164/291 (57%), Positives = 198/291 (69%), Gaps = 7/291 (2%)
Query 10 AVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLG 69
A G G + D++ GDP+RGHPVA FGRAA +E++ +RD R GA+H + VG LG
Sbjct 8 AYGAAAGLIGDLLLGDPRRGHPVAAFGRAAGAVERVLWRDHRGWGALHTAVCVGGAVGLG 67
Query 70 AALQRL--PGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGR 127
A + + P R+ VA TA ATWA +GGTSLAR R I LE DV+AAR LP LCGR
Sbjct 68 AVAEHVVRPSRTASVALTAAATWAVVGGTSLAREARVIGRALEAGDVDAARDRLPHLCGR 127
Query 128 DPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPR 187
DP L G+ RA +ESVAENT+DA V L+W A GVP +LG+RA+NTLD+M+G++SPR
Sbjct 128 DPQALDAHGIARAVVESVAENTSDAVVGALVWGAVGGVPGLLGFRAVNTLDAMVGHKSPR 187
Query 188 YLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVV 247
Y RFGWA+ARLDD A + GAR TAVL A G PRGAVRAWR DA RHPSPNAG V
Sbjct 188 YRRFGWASARLDDLAGWPGARLTAVL----AATAGDRPRGAVRAWREDAHRHPSPNAGPV 243
Query 248 EAAFAGALDVRLGGPTRYHHELQIRPTLG-DGRSPKVADLRRAVVLSRVVQ 297
EA+FAGAL VRLGG Y ++ RP L +GR+ D+ RAV LSR V
Sbjct 244 EASFAGALGVRLGGTLSYAGRVEHRPVLHQEGRAVATHDIERAVRLSRRVS 294
>gi|226360327|ref|YP_002778105.1| cobalamin biosynthesis protein [Rhodococcus opacus B4]
gi|226238812|dbj|BAH49160.1| putative adenosylcobinamide-phosphate synthase [Rhodococcus opacus
B4]
Length=327
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 177/302 (59%), Positives = 207/302 (69%), Gaps = 3/302 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RA G+L+G D F DP R HPVA FGR A LE++TYRD R AG +HV +LVG L
Sbjct 11 RAAGLLLGFAADRAFADPARWHPVAGFGRTAMALEKVTYRDSRSAGILHVAVLVGGAAGL 70
Query 69 GAALQRLPGRS-W--PVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLC 125
G R+ R W A TA ATWA LGGTSL RTG ++ LE DD+ AAR LLPSLC
Sbjct 71 GVVADRVARRGGWAGEAAWTAAATWAVLGGTSLGRTGASMAAHLEADDLAAARALLPSLC 130
Query 126 GRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRS 185
GRDP+ LG GLTRA LESVAENT+D+ V +LW A +GVP + YRA NTLD+M+GYRS
Sbjct 131 GRDPSVLGVDGLTRATLESVAENTSDSAVGAVLWGAVAGVPGLFVYRASNTLDAMVGYRS 190
Query 186 PRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAG 245
P+Y FGWAAAR DD N + AR T L V AP VGGSP+ A AWRRDA+RHPSPNAG
Sbjct 191 PKYRNFGWAAARWDDVLNLLPARLTGALSVGAAPTVGGSPKEAWAAWRRDASRHPSPNAG 250
Query 246 VVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAV 305
V EA AGAL + LGG T Y H +++RP LG G SP+ DL RAV LS VQAGA +++
Sbjct 251 VAEACAAGALGISLGGRTEYAHGVEMRPVLGSGPSPRPVDLDRAVRLSTAVQAGAVLVSA 310
Query 306 ML 307
L
Sbjct 311 AL 312
>gi|331696535|ref|YP_004332774.1| Cobalamin biosynthesis protein cbiB [Pseudonocardia dioxanivorans
CB1190]
gi|326951224|gb|AEA24921.1| Cobalamin biosynthesis protein cbiB [Pseudonocardia dioxanivorans
CB1190]
Length=329
Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 175/294 (60%), Positives = 199/294 (68%), Gaps = 1/294 (0%)
Query 1 VFASTWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGL 60
V +S RA+G+L G L D V GDP+RGHPVA FGR A LE+ D R GA HV
Sbjct 8 VRSSRGTARALGLLAGVLADRVVGDPRRGHPVAGFGRLAGALERRDRADSRARGAAHVVA 67
Query 61 LVGAVGLLGAALQRLP-GRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARR 119
LVG V G A++R + V T ATWA LGG SL G + L D AARR
Sbjct 68 LVGGVVAAGLAVERASRAPAAVVVTTGVATWAVLGGRSLVGEGTALGRELAAGDEAAARR 127
Query 120 LLPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDS 179
LP LCGRDP L G+ RA +ES+AENT+DA V PLLW A +GVP +LGYRA+NTLD+
Sbjct 128 RLPHLCGRDPDTLDAAGMARAGVESLAENTSDAVVAPLLWGAVAGVPGLLGYRAVNTLDA 187
Query 180 MIGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARH 239
MIG+RSPRY RFGWAAARLDD AN V AR A LV AP+VGGSPR A+RAWRRDA H
Sbjct 188 MIGHRSPRYARFGWAAARLDDLANLVPARVAACLVAGLAPLVGGSPRAALRAWRRDAGAH 247
Query 240 PSPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS 293
PSPNAG VEAA AGAL VRLGG T Y + +Q RP LG+GR P+V DL RA VLS
Sbjct 248 PSPNAGPVEAAAAGALGVRLGGTTVYPYGVQERPVLGEGRPPEVPDLARAAVLS 301
>gi|256375019|ref|YP_003098679.1| cobalamin biosynthesis protein CobD [Actinosynnema mirum DSM
43827]
gi|255919322|gb|ACU34833.1| cobalamin biosynthesis protein CobD [Actinosynnema mirum DSM
43827]
Length=315
Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 169/288 (59%), Positives = 203/288 (71%), Gaps = 2/288 (0%)
Query 9 RAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLL 68
RAVG+ +G D VFGDP+RGHPVA FGR A LEQ +RD + AGA HV +LVG V L
Sbjct 5 RAVGLALGVAADAVFGDPRRGHPVAAFGRVAGALEQRLHRDDKGAGAAHVVVLVGGVVLA 64
Query 69 GAALQRLPGRSWPVAATATAT--WAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCG 126
GAA++RL GRS + A TA W LGG SLA G + L+ D+ AAR LP+LCG
Sbjct 65 GAAVERLAGRSEALRALTTAAATWVVLGGASLADEGTAMGRELDGGDLVAARDRLPNLCG 124
Query 127 RDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSP 186
RDP +L GL +A +ESVAENT+DA V PL+W A +GVP +LGYRA+NTLD+MIG+RS
Sbjct 125 RDPERLDTMGLAKATVESVAENTSDAVVAPLVWGAVAGVPGLLGYRAVNTLDAMIGHRSA 184
Query 187 RYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGV 246
RY FGWAAARLDD AN + +R A+L V APVVGGS A + WRRDAA HPSPNAG
Sbjct 185 RYRNFGWAAARLDDLANLLPSRLAALLTVAGAPVVGGSAGEAWQVWRRDAAAHPSPNAGQ 244
Query 247 VEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSR 294
VEAAFAGAL+++LGG T Y + + RP LG GR+P + RAV LSR
Sbjct 245 VEAAFAGALEIQLGGRTVYSYGPEDRPVLGHGRNPDAGHVTRAVELSR 292
>gi|300788874|ref|YP_003769165.1| adenosylcobinamide-phosphate synthase CobD [Amycolatopsis mediterranei
U32]
gi|299798388|gb|ADJ48763.1| adenosylcobinamide-phosphate synthase CobD [Amycolatopsis mediterranei
U32]
gi|340530498|gb|AEK45703.1| adenosylcobinamide-phosphate synthase CobD [Amycolatopsis mediterranei
S699]
Length=344
Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 161/287 (57%), Positives = 192/287 (67%), Gaps = 9/287 (3%)
Query 14 LIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLV-GAVGLLGAAL 72
+ G + D +FGDP+ GHPVALFG AAA+LE + D + GA + L GAVGL GAAL
Sbjct 1 MTGYVTDALFGDPRTGHPVALFGTAAARLEHRLWADSKPRGAAYAALCTFGAVGL-GAAL 59
Query 73 QRLPGRSWPVA---ATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDP 129
Q L R P A TA TW LGG LA G +++ LLE +V AR+ L LC RD
Sbjct 60 Q-LATRRRPFARFLLTAAFTWVVLGGRGLAAEGTEMARLLEAGEVPEARQRLSHLCARDA 118
Query 130 AQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYL 189
L LTRAA ES+AENT+DA V PL W A +G+P +LGYRA+NTLD+M+GYRSPRY
Sbjct 119 TALDSAELTRAATESIAENTSDAVVAPLFWGAVAGMPGLLGYRALNTLDAMVGYRSPRYR 178
Query 190 RFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEA 249
RFGWAAAR DD N V +R A L +CA GG R + R WRRD +RHPSPNAG VEA
Sbjct 179 RFGWAAARADDVVNLVPSRIGAALTALCA---GGRARESWRVWRRDGSRHPSPNAGQVEA 235
Query 250 AFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVV 296
AFAGALD+RLGG Y E++ R LG+GR P+ DLRRAV LSR+V
Sbjct 236 AFAGALDIRLGGTNSYGGEVESRARLGEGRHPEPVDLRRAVRLSRLV 282
>gi|158316627|ref|YP_001509135.1| cobalamin biosynthesis protein [Frankia sp. EAN1pec]
gi|158112032|gb|ABW14229.1| cobalamin biosynthesis protein CobD [Frankia sp. EAN1pec]
Length=332
Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 157/281 (56%), Positives = 185/281 (66%), Gaps = 8/281 (2%)
Query 7 QTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVG 66
+ R VG+++G LD V DP RGHPVA FGR A LE+ +RD R+ GA + +LV G
Sbjct 3 RARTVGLVLGAALDAVLADPARGHPVAGFGRVAGGLERAVHRDSRLVGAAYATVLVAGTG 62
Query 67 LLGAALQ-----RLPGRSWPVA---ATATATWAALGGTSLARTGRQISDLLERDDVEAAR 118
A + R PGR +A TA TW LGGTSL R GR + LER D+ AAR
Sbjct 63 AAAAGAERALAGRHPGRRAALARAGLTAATTWTVLGGTSLRRQGRALGGELERRDLRAAR 122
Query 119 RLLPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLD 178
LPSLCGRDP+ L GL RA +ESVAENT+DA V PLLW A +G+P ++ YRA NTLD
Sbjct 123 TRLPSLCGRDPSALDAGGLARAGVESVAENTSDAVVAPLLWGAVAGLPGLVAYRAANTLD 182
Query 179 SMIGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAAR 238
+M+GYR R+ RFGWA AR DD AN + AR A+L CAPVVGGSP A R RRD
Sbjct 183 AMVGYRDARHGRFGWAVARTDDAANLLPARMCALLTCACAPVVGGSPAEAFRVMRRDGRS 242
Query 239 HPSPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGR 279
HPSPNAGVVEAAFAGAL +RLGG RY H ++ RP LG GR
Sbjct 243 HPSPNAGVVEAAFAGALGLRLGGELRYPHGVEHRPELGSGR 283
>gi|326382465|ref|ZP_08204156.1| cobalamin biosynthesis protein [Gordonia neofelifaecis NRRL B-59395]
gi|326198584|gb|EGD55767.1| cobalamin biosynthesis protein [Gordonia neofelifaecis NRRL B-59395]
Length=310
Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 166/291 (58%), Positives = 197/291 (68%), Gaps = 9/291 (3%)
Query 7 QTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVG 66
++ AVG+++G D GDP+R HPVA FG A +++E++TY D R GA VG +G
Sbjct 14 RSEAVGLVVGAAADAAVGDPQRYHPVAGFGTAVSRVERLTYTDSRPVGAA---FAVGWIG 70
Query 67 LLGAALQRLPGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCG 126
A W TA AT+ ALGGTSL G QI+D L+ D+E ARRL+ L G
Sbjct 71 AAATAGALARRAGW--LGTAAATFTALGGTSLCTVGEQIADALDAGDIEEARRLVSGLVG 128
Query 127 RDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSP 186
RDP L G+ RAA+ES+AENT+DA V PL W A +G P +LGYRA NTLD+MIGYRS
Sbjct 129 RDPNLLDESGICRAAVESIAENTSDAAVAPLFWGAVAGAPGLLGYRAANTLDAMIGYRSE 188
Query 187 RYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGV 246
RYLRFGWAAAR+DD AN V AR TA++ A VV G P A RA RRDAA+HPSPNAGV
Sbjct 189 RYLRFGWAAARIDDGANLVPARLTALI----AAVVSGRPGDAWRAVRRDAAKHPSPNAGV 244
Query 247 VEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQ 297
VEAAFAGAL + LGG T Y H + RPTLGDG +P ADLR AVVLSR VQ
Sbjct 245 VEAAFAGALGIELGGRTIYAHGTEERPTLGDGHAPTAADLRAAVVLSRRVQ 295
>gi|336178244|ref|YP_004583619.1| Cobalamin biosynthesis protein cbiB [Frankia symbiont of Datisca
glomerata]
gi|334859224|gb|AEH09698.1| Cobalamin biosynthesis protein cbiB [Frankia symbiont of Datisca
glomerata]
Length=351
Score = 271 bits (692), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 157/284 (56%), Positives = 184/284 (65%), Gaps = 9/284 (3%)
Query 26 PKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGA--------ALQRLPG 77
P RGHPVA FG A EQ+ YRD R AG + L G +GA A RL
Sbjct 23 PARGHPVAAFGTVANHTEQLLYRDSRAAGLAYTCALAGGTVAVGALARSGVTRAGHRLGC 82
Query 78 -RSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPG 136
R+ PV T ATW LGGTSL R GR++ L RD++ AAR LPSLCGRDPA L G
Sbjct 83 PRAAPVTLTTAATWTVLGGTSLRRHGRRLGGELLRDNLIAARGRLPSLCGRDPAVLDRAG 142
Query 137 LTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAA 196
L+RA +ES+AENT+DA V PLLW A GVP +LGYRA+NTLD+++GYR+ R+ RFGWA+A
Sbjct 143 LSRAGVESLAENTSDAVVGPLLWGALGGVPGLLGYRAVNTLDALVGYRNTRHARFGWASA 202
Query 197 RLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALD 256
RLDD AN + +R +L CAPVVGGS A RRD HPSPNAG VEAAFAGAL
Sbjct 203 RLDDLANLLPSRVAGLLACACAPVVGGSAVDAFWVMRRDGRSHPSPNAGQVEAAFAGALG 262
Query 257 VRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGA 300
+RLGG RYHH ++ RP +G GR ADL RA VLS V A
Sbjct 263 LRLGGTLRYHHGVEHRPVMGYGRPAVPADLERAAVLSAAVSGCA 306
>gi|29832959|ref|NP_827593.1| cobalamin biosynthesis protein [Streptomyces avermitilis MA-4680]
gi|29610080|dbj|BAC74128.1| putative cobalamin biosynthesis protein [Streptomyces avermitilis
MA-4680]
Length=313
Score = 270 bits (690), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/290 (55%), Positives = 194/290 (67%), Gaps = 7/290 (2%)
Query 10 AVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLG 69
A G G + D++ GDP+RGHPVA FGRAA +E++ +RD R GA+H + G L
Sbjct 8 AYGAAAGLIGDLLLGDPRRGHPVAAFGRAAGVVERVLWRDHRGWGALHTVVCAGGAVGLA 67
Query 70 AALQRL--PGRSWPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGR 127
A R R+ VA TA ATWA +GGTSL R R I L+ D+E AR LP LCGR
Sbjct 68 AVAARSVRTSRTASVALTAAATWAVVGGTSLGREARAIGQALDAGDIEGARERLPHLCGR 127
Query 128 DPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPR 187
DP L G+ RA +ESVAENT+DA V L+W A GVP ++G+RA+NTLD+M+G+RSPR
Sbjct 128 DPGALDADGIARAVVESVAENTSDAVVGALVWGAVGGVPGLVGFRAVNTLDAMVGHRSPR 187
Query 188 YLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVV 247
YLR+GWA+ARLDD + GAR TAVL A + G PRGA+RAWR DAARHPSPNAG V
Sbjct 188 YLRYGWASARLDDVMGWPGARLTAVL----AALAGHDPRGALRAWRSDAARHPSPNAGPV 243
Query 248 EAAFAGALDVRLGGPTRYHHELQIRPTL-GDGRSPKVADLRRAVVLSRVV 296
EA+FAGAL VRLGG Y ++ RP L G GR+ D+ RAV LSR V
Sbjct 244 EASFAGALGVRLGGTLSYGGRVEHRPVLNGGGRAVDSKDIERAVRLSRRV 293
>gi|284031050|ref|YP_003380981.1| cobalamin biosynthesis protein CobD [Kribbella flavida DSM 17836]
gi|283810343|gb|ADB32182.1| cobalamin biosynthesis protein CobD [Kribbella flavida DSM 17836]
Length=322
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 151/294 (52%), Positives = 188/294 (64%), Gaps = 8/294 (2%)
Query 7 QTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVG 66
+RA+G+++G D + GDP+R HPVA FGRAA ++E Y D R AG + +LVG+V
Sbjct 1 MSRALGLILGFAADRLLGDPRRFHPVAGFGRAATRVEAGLYADSRAAGTAYAAVLVGSVT 60
Query 67 LLGAALQRLPGRSWPVA---ATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPS 123
G +RL R PVA TA TWA +GG SL R +S LLE ++ AAR L
Sbjct 61 AAGLVAERLTTRR-PVARTLLTAATTWAVVGGRSLEREAAVMSGLLEAKNLPAARDRLSH 119
Query 124 LCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGY 183
LC RD L L RA +ES+AENT+DA V PL+W G+P ++GYRA NTLD+M+GY
Sbjct 120 LCSRDATDLQADELARATVESIAENTSDATVAPLIWGGLFGIPGLVGYRAANTLDAMVGY 179
Query 184 RSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPN 243
RS +Y FGWAAAR DD N V AR AVL + + G PR R WRRDA +HPSPN
Sbjct 180 RSAKYRNFGWAAARFDDLVNLVPARVCAVLTGL----MSGRPRVVRRIWRRDAGKHPSPN 235
Query 244 AGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQ 297
AG VEA+FAGALD+RLGG Y E++ R TLGDG P V+D+RR VL+R V
Sbjct 236 AGPVEASFAGALDLRLGGTNTYRDEVEDRGTLGDGLRPGVSDVRRTAVLARRVS 289
>gi|284989159|ref|YP_003407713.1| cobalamin biosynthesis protein CobD [Geodermatophilus obscurus
DSM 43160]
gi|284062404|gb|ADB73342.1| cobalamin biosynthesis protein CobD [Geodermatophilus obscurus
DSM 43160]
Length=318
Score = 267 bits (682), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 164/274 (60%), Positives = 190/274 (70%), Gaps = 4/274 (1%)
Query 26 PKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQRLPGRSWPVA-- 83
P+R HPVA FGRAAA LE+ T+RD R AG H GLL GA LG AL R R P A
Sbjct 29 PRRWHPVAGFGRAAAALERRTWRDSRTAGVAHAGLLTGAAAALGVALDRAT-RGRPRART 87
Query 84 -ATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPGLTRAAL 142
TA ATWA LGGTSL R G + L+ D+ AAR LLP+L GRDPA L P L RA +
Sbjct 88 LVTAAATWAVLGGTSLGRAGTAMVRTLDAGDLPAARALLPTLAGRDPAGLEVPELARATV 147
Query 143 ESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAARLDDWA 202
ESVAENT+DA V PL+W A +G+P +LGYRA+NTLD+M+G+RSPRY RFGWA+AR DD A
Sbjct 148 ESVAENTSDAAVAPLVWGALAGLPGLLGYRAVNTLDAMVGHRSPRYARFGWASARADDVA 207
Query 203 NYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALDVRLGGP 262
N++ AR TA L V AP+ GGS RGA R W RD A HPSPNAG EAA AGALD+RLGG
Sbjct 208 NWLPARLTAALTVATAPLAGGSARGAWRVWHRDGAAHPSPNAGRCEAALAGALDLRLGGR 267
Query 263 TRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVV 296
Y ++ RP LG GR+P D+ RAV LSR V
Sbjct 268 NVYGSRVEDRPVLGSGRTPSARDVPRAVRLSRAV 301
>gi|336115958|ref|YP_004570724.1| cobalamin biosynthesis protein CobD [Microlunatus phosphovorus
NM-1]
gi|334683736|dbj|BAK33321.1| cobalamin biosynthesis protein CobD [Microlunatus phosphovorus
NM-1]
Length=318
Score = 266 bits (680), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 155/298 (53%), Positives = 198/298 (67%), Gaps = 2/298 (0%)
Query 12 GVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAA 71
G++ G +LD +FGDP+R HPVA FGRAA +LEQ Y D R AG + + V A G A
Sbjct 16 GLIAGYVLDRMFGDPERWHPVAGFGRAAGRLEQRLYADDRRAGVLFTAVSVAAPIAAGVA 75
Query 72 LQRLPGRSWPVAA--TATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDP 129
L+R R V TA ATWA LGG SL + ++D L +D+ AAR + L GR+
Sbjct 76 LERATRRVPLVTGVLTAAATWAVLGGRSLTQEACAVADHLGAEDLPAARHQVGRLVGRET 135
Query 130 AQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYL 189
A+L + RAA+ESVAEN++DA V PLLW A +G+P +LGYRAINTLD+M+G+RSPRY
Sbjct 136 AELDESEVARAAVESVAENSSDAVVAPLLWGAVAGLPGLLGYRAINTLDAMVGHRSPRYE 195
Query 190 RFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEA 249
RFGWA+ARLDD N++ AR +A L + AP + GSP+ A RRDA+ HPSPNAGVVEA
Sbjct 196 RFGWASARLDDLVNWIPARVSAGLATLGAPWISGSPKEAAAVVRRDASAHPSPNAGVVEA 255
Query 250 AFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVVQAGAAVLAVML 307
AFAGAL +RLGG Y + R TLGDGR P D+ R L+ +V A V+AV++
Sbjct 256 AFAGALGIRLGGRNVYEGAVSDRGTLGDGRPPVGGDIARTTRLATMVGDAALVVAVLI 313
>gi|258650440|ref|YP_003199596.1| cobalamin biosynthesis protein CobD [Nakamurella multipartita
DSM 44233]
gi|258553665|gb|ACV76607.1| cobalamin biosynthesis protein CobD [Nakamurella multipartita
DSM 44233]
Length=316
Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 167/292 (58%), Positives = 196/292 (68%), Gaps = 2/292 (0%)
Query 4 STWQTRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVG 63
+ RA+G+L+G D++ GDP+RGHPVA FGR AA LE+ TYRD R AGA H +LV
Sbjct 2 KSTSARALGLLLGYGADLMLGDPRRGHPVAGFGRLAAALERRTYRDSRAAGAGHTAVLVI 61
Query 64 AVGLLGAALQRLPGRS--WPVAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLL 121
G A +R+ RS VA TA ATWA LGG SL R ++ L D+ ARR +
Sbjct 62 GTVSAGIAAERVAHRSPIIRVALTAAATWAVLGGRSLRREANAVATRLAAGDLPGARRQI 121
Query 122 PSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMI 181
L GRDPA L G+ RA +ESVAENT+DA V PLLW A +GVP +LGYRA+NTLD+MI
Sbjct 122 THLVGRDPATLDQAGIARACVESVAENTSDAVVAPLLWGAMAGVPGLLGYRAVNTLDAMI 181
Query 182 GYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPS 241
G+RSPRY RFGWAAARLDD AN V AR +A L AP VGGS R A RA RRDA HPS
Sbjct 182 GHRSPRYARFGWAAARLDDAANLVPARLSAALAAGLAPTVGGSVRAARRAVRRDAGHHPS 241
Query 242 PNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLS 293
PNAG VEAAFAGAL LGG Y ++ R TLGDG +P+ D+ RAV LS
Sbjct 242 PNAGPVEAAFAGALGRTLGGVNVYGGTVEDRGTLGDGPAPRTTDIARAVRLS 293
>gi|86741295|ref|YP_481695.1| cobalamin biosynthesis protein [Frankia sp. CcI3]
gi|86568157|gb|ABD11966.1| adenosylcobinamide-phosphate synthase [Frankia sp. CcI3]
Length=366
Score = 265 bits (678), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 156/288 (55%), Positives = 193/288 (68%), Gaps = 10/288 (3%)
Query 8 TRAVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGL 67
RA G+++G +LD + DP R HPVA FGRAA++LE YRDGR GA+H +L+ AV +
Sbjct 13 VRAFGLVLGAVLDGLLADPARLHPVAGFGRAASRLENRLYRDGRAPGALHTAVLLAAVAV 72
Query 68 LGAALQRLPGRSWPVAA----------TATATWAALGGTSLARTGRQISDLLERDDVEAA 117
A +R R+ AA TA TW LGG SL R GR++ + L DD+ AA
Sbjct 73 PAVAAERAAERAAERAAERAAERAVALTAVVTWTVLGGASLRRQGRRLGEELRADDLAAA 132
Query 118 RRLLPSLCGRDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTL 177
R LP+LCGRDPA L G+ R A+ES+AENT+DA V PL W A +G+P ++ YRAINTL
Sbjct 133 RERLPALCGRDPASLDAAGIARGAIESIAENTSDALVAPLWWGALAGLPGLVTYRAINTL 192
Query 178 DSMIGYRSPRYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAA 237
D+MIG+ SPRY RFGWAAARLDD AN + AR A++ CAPVVGGS A RRD
Sbjct 193 DAMIGHHSPRYERFGWAAARLDDLANLLPARMCALVTCACAPVVGGSAVDAYWVMRRDGR 252
Query 238 RHPSPNAGVVEAAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVAD 285
HPSPNAG+VEAAFAGAL +RLGG RY + ++ RP LG GR P+ AD
Sbjct 253 SHPSPNAGMVEAAFAGALGLRLGGELRYPYRVEHRPELGFGRRPQGAD 300
>gi|290961438|ref|YP_003492620.1| cobalamin biosynthesis protein [Streptomyces scabiei 87.22]
gi|260650964|emb|CBG74082.1| cobalamin biosynthesis protein [Streptomyces scabiei 87.22]
Length=319
Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 151/275 (55%), Positives = 180/275 (66%), Gaps = 7/275 (2%)
Query 26 PKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLGAALQRL--PGRSWPVA 83
P+RGHPVA FGRAA +E++ +RD R G +H + G LGA P R+ V
Sbjct 24 PRRGHPVAAFGRAAGAVERVLWRDHRGWGTLHTAVCAGGAVALGAVASAAVRPSRAASVG 83
Query 84 ATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRDPAQLGGPGLTRAALE 143
TA ATWA +GGTSL R R + L DVE AR LP LCGRDP L G+ RA +E
Sbjct 84 LTAAATWAVVGGTSLGREARAVGRSLTAGDVEGARARLPHLCGRDPQALDADGIARAVVE 143
Query 144 SVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRYLRFGWAAARLDDWAN 203
SVAENT+DA V L+W A GVP ++G+RA+NTLD+M+G+RS RY R+GWA+ARLDD
Sbjct 144 SVAENTSDAVVGALVWGAVGGVPGLVGFRAVNTLDAMVGHRSERYRRYGWASARLDDVVG 203
Query 204 YVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVEAAFAGALDVRLGGPT 263
+ GAR TAVL C GG RGAVRAWR DA RHPSPNAG VEA+FAGAL VRLGG
Sbjct 204 WPGARLTAVLAAAC----GGDARGAVRAWRADAGRHPSPNAGPVEASFAGALGVRLGGTL 259
Query 264 RYHHELQIRPTL-GDGRSPKVADLRRAVVLSRVVQ 297
Y ++ RP L G GR+ V D+ RAV LSR V
Sbjct 260 SYGGRVEHRPVLNGKGRAVAVEDIERAVRLSRRVS 294
>gi|257055793|ref|YP_003133625.1| adenosylcobinamide-phosphate synthase [Saccharomonospora viridis
DSM 43017]
gi|256585665|gb|ACU96798.1| adenosylcobinamide-phosphate synthase [Saccharomonospora viridis
DSM 43017]
Length=332
Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/288 (56%), Positives = 193/288 (68%), Gaps = 1/288 (0%)
Query 10 AVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLG 69
AVG+ +G +LD + GDP R HPVA GR A LE + YRD RV+G VH G +V + +
Sbjct 18 AVGLGLGFVLDRILGDPARYHPVAGLGRYARALEAVLYRDSRVSGVVHHGAVVVPLVAVT 77
Query 70 AALQRLPGRSWP-VAATATATWAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCGRD 128
A QR P V TA ATW +GG SL R G I+ LER D+ AAR + L GRD
Sbjct 78 ALAQRTARSPIPRVLLTAAATWTVVGGRSLVREGETIAAQLERGDLAAAREQVTHLVGRD 137
Query 129 PAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSPRY 188
P L G++RA +ES+AENT+DA V PLLW A+ GVP ++GYRA+NTLD+MIG+RSPRY
Sbjct 138 PRHLDPGGVSRAVVESLAENTSDAVVAPLLWGAALGVPGLVGYRAVNTLDAMIGHRSPRY 197
Query 189 LRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGVVE 248
RFGWA AR+DD AN V +R A L V AP VGG R A+RAWRRDA RHPSPNAG VE
Sbjct 198 HRFGWAGARVDDLANLVPSRVAAALAVALAPTVGGRRRDALRAWRRDAFRHPSPNAGPVE 257
Query 249 AAFAGALDVRLGGPTRYHHELQIRPTLGDGRSPKVADLRRAVVLSRVV 296
AAFAGAL V LGG Y ++ R LGDG +P VADL RA L+ +V
Sbjct 258 AAFAGALGVTLGGVNHYAGRVEHRAELGDGPAPTVADLPRAARLATLV 305
>gi|182439438|ref|YP_001827157.1| cobalamin biosynthesis protein [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326780102|ref|ZP_08239367.1| Cobalamin biosynthesis protein cbiB [Streptomyces cf. griseus
XylebKG-1]
gi|178467954|dbj|BAG22474.1| putative cobalamin biosynthesis protein CobD [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|326660435|gb|EGE45281.1| Cobalamin biosynthesis protein cbiB [Streptomyces griseus XylebKG-1]
Length=341
Score = 261 bits (666), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 161/309 (53%), Positives = 194/309 (63%), Gaps = 13/309 (4%)
Query 10 AVGVLIGCLLDVVFGDPKRGHPVALFGRAAAKLEQITYRDGRVAGAVHVGLLVGAVGLLG 69
A G G + D + GDP+RGHPVA FGRAAA++E + +RD R GA+H L+ +
Sbjct 8 AYGATAGLIADALLGDPRRGHPVAGFGRAAARVESLLWRDDRGRGALHT-LVCAGGAVGA 66
Query 70 AALQRLPGRSWPVAATATAT---WAALGGTSLARTGRQISDLLERDDVEAARRLLPSLCG 126
AAL R P A A W+ +GGTSL R R I L D+E AR LP LCG
Sbjct 67 AALTARAVRGRPALAVALTAATAWSVVGGTSLGREARAIGGALAAGDLEVARERLPHLCG 126
Query 127 RDPAQLGGPGLTRAALESVAENTADAQVVPLLWAASSGVPAVLGYRAINTLDSMIGYRSP 186
RDP L GPG+ RA +ESVAENT+DA V L+W A GVP ++G+RA+NTLD+M+G++SP
Sbjct 127 RDPHSLDGPGIARAVVESVAENTSDAVVGALVWGAIGGVPGLVGFRAVNTLDAMVGHKSP 186
Query 187 RYLRFGWAAARLDDWANYVGARATAVLVVICAPVVGGSPRGAVRAWRRDAARHPSPNAGV 246
RY R+GWA+ARLDD A + GAR TA L V GG PR AVRAWR DA RHPSPNAG
Sbjct 187 RYRRYGWASARLDDLAGWPGARLTAALAV----AAGGRPRAAVRAWRADAGRHPSPNAGP 242
Query 247 VEAAFAGALDVRLGGPTRYHHELQIRPTLG--DGRSPKVADLRRAVVLSRVVQA---GAA 301
VEA+FAGAL VRLGG Y ++ RP L GR + AD+ RAV LSR V G
Sbjct 243 VEASFAGALGVRLGGTLAYAGRVEHRPVLNGESGRDVRGADIERAVRLSRRVSTLALGVC 302
Query 302 VLAVMLVYR 310
V ML R
Sbjct 303 VAGRMLAGR 311
Lambda K H
0.322 0.137 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 539914028364
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
Posted date: Sep 5, 2011 4:36 AM
Number of letters in database: 5,219,829,388
Number of sequences in database: 15,229,318
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 11
Window for multiple hits: 40