BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2240c Length=196 Score E Sequences producing significant alignments: (Bits) Value gi|167969358|ref|ZP_02551635.1| hypothetical protein MtubH3_1556... 390 4e-107 gi|254551284|ref|ZP_05141731.1| hypothetical protein Mtube_12613... 390 5e-107 gi|297634835|ref|ZP_06952615.1| hypothetical protein MtubK4_1196... 390 7e-107 gi|15841733|ref|NP_336770.1| hypothetical protein MT2300 [Mycoba... 388 2e-106 gi|15609377|ref|NP_216756.1| hypothetical protein Rv2240c [Mycob... 388 3e-106 gi|31793420|ref|NP_855913.1| hypothetical protein Mb2264c [Mycob... 386 1e-105 gi|306780275|ref|ZP_07418612.1| hypothetical protein TMBG_00791 ... 362 2e-98 gi|339295156|gb|AEJ47267.1| hypothetical protein CCDC5079_2077 [... 296 1e-78 gi|289758364|ref|ZP_06517742.1| conserved hypothetical protein [... 280 8e-74 gi|183983323|ref|YP_001851614.1| hypothetical protein MMAR_3333 ... 268 2e-70 gi|118617008|ref|YP_905340.1| hypothetical protein MUL_1309 [Myc... 266 1e-69 gi|336461853|gb|EGO40709.1| hypothetical protein MAPs_26910 [Myc... 264 6e-69 gi|41408091|ref|NP_960927.1| hypothetical protein MAP1993c [Myco... 263 1e-68 gi|342857265|ref|ZP_08713921.1| hypothetical protein MCOL_00265 ... 261 5e-68 gi|240170075|ref|ZP_04748734.1| hypothetical protein MkanA1_1223... 254 4e-66 gi|296166131|ref|ZP_06848576.1| conserved hypothetical protein [... 245 3e-63 gi|254774907|ref|ZP_05216423.1| hypothetical protein MaviaA2_095... 237 8e-61 gi|118463755|ref|YP_881406.1| hypothetical protein MAV_2197 [Myc... 226 1e-57 gi|254819065|ref|ZP_05224066.1| hypothetical protein MintA_04016... 222 2e-56 gi|333990296|ref|YP_004522910.1| hypothetical protein JDM601_165... 165 3e-39 gi|118471921|ref|YP_888597.1| hypothetical protein MSMEG_4322 [M... 150 1e-34 gi|108800327|ref|YP_640524.1| hypothetical protein Mmcs_3361 [My... 149 2e-34 gi|315443828|ref|YP_004076707.1| hypothetical protein Mspyr1_222... 137 9e-31 gi|145223369|ref|YP_001134047.1| hypothetical protein Mflv_2782 ... 137 1e-30 gi|120404710|ref|YP_954539.1| hypothetical protein Mvan_3751 [My... 133 1e-29 gi|298525732|ref|ZP_07013141.1| hypothetical protein TBAG_03957 ... 133 1e-29 gi|169628973|ref|YP_001702622.1| hypothetical protein MAB_1885 [... 71.2 8e-11 gi|54026814|ref|YP_121056.1| hypothetical protein nfa48400 [Noca... 42.0 0.045 gi|226307156|ref|YP_002767116.1| hypothetical protein RER_36690 ... 39.3 0.30 gi|296394787|ref|YP_003659671.1| hypothetical protein Srot_2396 ... 36.6 1.8 gi|54023580|ref|YP_117822.1| hypothetical protein nfa16120 [Noca... 35.0 5.6 gi|308186345|ref|YP_003930476.1| RND efflux system, outer membra... 34.3 8.8 >gi|167969358|ref|ZP_02551635.1| hypothetical protein MtubH3_15560 [Mycobacterium tuberculosis H37Ra] Length=215 Score = 390 bits (1003), Expect = 4e-107, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 20 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 79 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 80 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 139 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR Sbjct 140 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 199 Query 181 LNDTKTKALTMCVAAF 196 LNDTKTKALTMCVAAF Sbjct 200 LNDTKTKALTMCVAAF 215 >gi|254551284|ref|ZP_05141731.1| hypothetical protein Mtube_12613 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289762404|ref|ZP_06521782.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|294993630|ref|ZP_06799321.1| hypothetical protein Mtub2_03754 [Mycobacterium tuberculosis 210] gi|313659160|ref|ZP_07816040.1| hypothetical protein MtubKV_12093 [Mycobacterium tuberculosis KZN V2475] gi|289709910|gb|EFD73926.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=232 Score = 390 bits (1003), Expect = 5e-107, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 37 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 96 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 97 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 156 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR Sbjct 157 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 216 Query 181 LNDTKTKALTMCVAAF 196 LNDTKTKALTMCVAAF Sbjct 217 LNDTKTKALTMCVAAF 232 >gi|297634835|ref|ZP_06952615.1| hypothetical protein MtubK4_11961 [Mycobacterium tuberculosis KZN 4207] gi|297731826|ref|ZP_06960944.1| hypothetical protein MtubKR_12083 [Mycobacterium tuberculosis KZN R506] gi|306785022|ref|ZP_07423344.1| hypothetical protein TMCG_00340 [Mycobacterium tuberculosis SUMu003] 20 more sequence titles Length=196 Score = 390 bits (1001), Expect = 7e-107, Method: Compositional matrix adjust. Identities = 195/196 (99%), Positives = 196/196 (100%), Gaps = 0/196 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 +LIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 1 MLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR Sbjct 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 Query 181 LNDTKTKALTMCVAAF 196 LNDTKTKALTMCVAAF Sbjct 181 LNDTKTKALTMCVAAF 196 >gi|15841733|ref|NP_336770.1| hypothetical protein MT2300 [Mycobacterium tuberculosis CDC1551] gi|254232393|ref|ZP_04925720.1| hypothetical protein TBCG_02189 [Mycobacterium tuberculosis C] gi|254365035|ref|ZP_04981081.1| hypothetical protein TBHG_02192 [Mycobacterium tuberculosis str. Haarlem] gi|13881991|gb|AAK46584.1| hypothetical protein MT2300 [Mycobacterium tuberculosis CDC1551] gi|124601452|gb|EAY60462.1| hypothetical protein TBCG_02189 [Mycobacterium tuberculosis C] gi|134150549|gb|EBA42594.1| hypothetical protein TBHG_02192 [Mycobacterium tuberculosis str. Haarlem] Length=261 Score = 388 bits (997), Expect = 2e-106, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 66 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 125 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 126 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 185 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR Sbjct 186 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 245 Query 181 LNDTKTKALTMCVAAF 196 LNDTKTKALTMCVAAF Sbjct 246 LNDTKTKALTMCVAAF 261 >gi|15609377|ref|NP_216756.1| hypothetical protein Rv2240c [Mycobacterium tuberculosis H37Rv] gi|148662061|ref|YP_001283584.1| hypothetical protein MRA_2260 [Mycobacterium tuberculosis H37Ra] gi|148823448|ref|YP_001288202.1| hypothetical protein TBFG_12269 [Mycobacterium tuberculosis F11] 15 more sequence titles Length=265 Score = 388 bits (996), Expect = 3e-106, Method: Compositional matrix adjust. Identities = 196/196 (100%), Positives = 196/196 (100%), Gaps = 0/196 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 70 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 129 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 130 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 189 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR Sbjct 190 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 249 Query 181 LNDTKTKALTMCVAAF 196 LNDTKTKALTMCVAAF Sbjct 250 LNDTKTKALTMCVAAF 265 >gi|31793420|ref|NP_855913.1| hypothetical protein Mb2264c [Mycobacterium bovis AF2122/97] gi|121638122|ref|YP_978346.1| hypothetical protein BCG_2257c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990616|ref|YP_002645303.1| hypothetical protein JTY_2251 [Mycobacterium bovis BCG str. Tokyo 172] 16 more sequence titles Length=265 Score = 386 bits (991), Expect = 1e-105, Method: Compositional matrix adjust. Identities = 195/196 (99%), Positives = 195/196 (99%), Gaps = 0/196 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 70 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 129 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 130 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 189 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR Sbjct 190 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 249 Query 181 LNDTKTKALTMCVAAF 196 LNDTKTKAL MCVAAF Sbjct 250 LNDTKTKALKMCVAAF 265 >gi|306780275|ref|ZP_07418612.1| hypothetical protein TMBG_00791 [Mycobacterium tuberculosis SUMu002] gi|308326887|gb|EFP15738.1| hypothetical protein TMBG_00791 [Mycobacterium tuberculosis SUMu002] Length=192 Score = 362 bits (929), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 183/183 (100%), Positives = 183/183 (100%), Gaps = 0/183 (0%) Query 14 GELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIR 73 GELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIR Sbjct 10 GELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIR 69 Query 74 ESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSAS 133 ESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSAS Sbjct 70 ESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSAS 129 Query 134 TVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCV 193 TVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCV Sbjct 130 TVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCV 189 Query 194 AAF 196 AAF Sbjct 190 AAF 192 >gi|339295156|gb|AEJ47267.1| hypothetical protein CCDC5079_2077 [Mycobacterium tuberculosis CCDC5079] gi|339298776|gb|AEJ50886.1| hypothetical protein CCDC5180_2049 [Mycobacterium tuberculosis CCDC5180] Length=151 Score = 296 bits (758), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 151/151 (100%), Positives = 151/151 (100%), Gaps = 0/151 (0%) Query 46 MPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVN 105 MPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVN Sbjct 1 MPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVN 60 Query 106 AYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAI 165 AYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAI Sbjct 61 AYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAI 120 Query 166 GAHASTAEFNRRVDRLNDTKTKALTMCVAAF 196 GAHASTAEFNRRVDRLNDTKTKALTMCVAAF Sbjct 121 GAHASTAEFNRRVDRLNDTKTKALTMCVAAF 151 >gi|289758364|ref|ZP_06517742.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289713928|gb|EFD77940.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=247 Score = 280 bits (716), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 141/141 (100%), Positives = 141/141 (100%), Gaps = 0/141 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 70 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 129 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT Sbjct 130 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 189 Query 121 EGPAIDALNNSASTVSGSLSA 141 EGPAIDALNNSASTVSGSLSA Sbjct 190 EGPAIDALNNSASTVSGSLSA 210 >gi|183983323|ref|YP_001851614.1| hypothetical protein MMAR_3333 [Mycobacterium marinum M] gi|183176649|gb|ACC41759.1| conserved hypothetical protein [Mycobacterium marinum M] Length=200 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 154/200 (77%), Positives = 173/200 (87%), Gaps = 4/200 (2%) Query 1 VLIGWRAVPRRHGGELP----RRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYR 56 +LIGWRAVPRRHGG RRGA ALGCIA+LLMGIVGCT+VTDGTA PDT VAPAYR Sbjct 1 MLIGWRAVPRRHGGAFSGSRARRGAQALGCIAVLLMGIVGCTSVTDGTATPDTKVAPAYR 60 Query 57 SSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRN 116 SSVS S+SASAATSS+RESQRQQSLTTKAIRTSC+ LA TSK+AIDKVN +V AFN GR+ Sbjct 61 SSVSMSISASAATSSVRESQRQQSLTTKAIRTSCETLATTSKEAIDKVNEFVGAFNAGRS 120 Query 117 TGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNR 176 TGPTEGPAI+ALNNSAS+VS +L+ ALS + DA NAY DAARAVANAIG HA T EFNR Sbjct 121 TGPTEGPAIEALNNSASSVSSALNEALSPDMRDAFNAYTDAARAVANAIGTHAPTGEFNR 180 Query 177 RVDRLNDTKTKALTMCVAAF 196 RVD+LNDTKTKAL +C+A++ Sbjct 181 RVDQLNDTKTKALKLCMASY 200 >gi|118617008|ref|YP_905340.1| hypothetical protein MUL_1309 [Mycobacterium ulcerans Agy99] gi|118569118|gb|ABL03869.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=200 Score = 266 bits (680), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 152/200 (76%), Positives = 172/200 (86%), Gaps = 4/200 (2%) Query 1 VLIGWRAVPRRHGGELP----RRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYR 56 +LIGWRAVPRRHGG RRGA ALGCIA+LLMGIVGCT+VTDGTA PDT VAPAYR Sbjct 1 MLIGWRAVPRRHGGAFSGSRARRGAQALGCIAVLLMGIVGCTSVTDGTATPDTKVAPAYR 60 Query 57 SSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRN 116 SSVS S+SASAATSS+RESQRQQSLTTKAIRTSC+ LA TSK+AIDKVN +V AFN GR+ Sbjct 61 SSVSLSISASAATSSVRESQRQQSLTTKAIRTSCETLATTSKEAIDKVNEFVGAFNAGRS 120 Query 117 TGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNR 176 TGPTEGPAI+ALNNSAS+VS +L+ ALS + DA NAY DA R+VANAIG HA T EFNR Sbjct 121 TGPTEGPAIEALNNSASSVSSALNEALSPDMRDAFNAYTDAVRSVANAIGTHAPTGEFNR 180 Query 177 RVDRLNDTKTKALTMCVAAF 196 RVD+LNDTKTKAL +C+A++ Sbjct 181 RVDQLNDTKTKALKLCMASY 200 >gi|336461853|gb|EGO40709.1| hypothetical protein MAPs_26910 [Mycobacterium avium subsp. paratuberculosis S397] Length=195 Score = 264 bits (674), Expect = 6e-69, Method: Compositional matrix adjust. Identities = 138/194 (72%), Positives = 163/194 (85%), Gaps = 0/194 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 +LI WR VP+ G PRRGALALGC+A L+GIVGCT+VT+GTA PDT VAPAYR SVS Sbjct 1 MLIRWRGVPQVQVGAFPRRGALALGCVAAALIGIVGCTSVTNGTATPDTRVAPAYRQSVS 60 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSAS+ TSS+RESQRQQSLTTKA+RT+C AL TSK+AIDK N +V AFN GR TGPT Sbjct 61 ASVSASSVTSSVRESQRQQSLTTKAVRTACAALVTTSKNAIDKTNEFVQAFNSGRGTGPT 120 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALN+SA+TV+ S + A+S Q+ DA NAY+DAA AVANAIG HAST+EFN+RVD+ Sbjct 121 EGPAIDALNDSANTVANSFNDAMSQQIKDAFNAYIDAAHAVANAIGTHASTSEFNKRVDQ 180 Query 181 LNDTKTKALTMCVA 194 LNDTK KA+ +C+A Sbjct 181 LNDTKKKAIQLCLA 194 >gi|41408091|ref|NP_960927.1| hypothetical protein MAP1993c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396446|gb|AAS04310.1| hypothetical protein MAP_1993c [Mycobacterium avium subsp. paratuberculosis K-10] Length=247 Score = 263 bits (672), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 139/194 (72%), Positives = 163/194 (85%), Gaps = 0/194 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLI WR VP+ G PRRGALALGC+A L+GIVGCT+VT+GTA PDT VAPAYR SVS Sbjct 53 VLIRWRGVPQVQVGAFPRRGALALGCVAAALIGIVGCTSVTNGTATPDTRVAPAYRQSVS 112 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSAS+ TSS+RESQRQQSLTTKA+RT+C AL TSK+AIDK N +V AFN GR TGPT Sbjct 113 ASVSASSVTSSVRESQRQQSLTTKAVRTACAALVTTSKNAIDKTNEFVQAFNSGRGTGPT 172 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALN+SA+TV+ S + A+S Q+ DA NAY+DAA AVANAIG HAST+EFN+RVD+ Sbjct 173 EGPAIDALNDSANTVANSFNDAMSQQIKDAFNAYIDAAHAVANAIGTHASTSEFNKRVDQ 232 Query 181 LNDTKTKALTMCVA 194 LNDTK KA+ +C+A Sbjct 233 LNDTKKKAIQLCLA 246 >gi|342857265|ref|ZP_08713921.1| hypothetical protein MCOL_00265 [Mycobacterium colombiense CECT 3035] gi|342134598|gb|EGT87764.1| hypothetical protein MCOL_00265 [Mycobacterium colombiense CECT 3035] Length=195 Score = 261 bits (666), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 138/194 (72%), Positives = 160/194 (83%), Gaps = 0/194 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 +LI W AVP+ LPRRGALALGC+A+ LMGIVGCT+VT+GTA PDT VAPAYR SVS Sbjct 1 MLIRWGAVPQTQVKALPRRGALALGCVAVTLMGIVGCTSVTNGTATPDTKVAPAYRQSVS 60 Query 61 ASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPT 120 ASVSAS+ TSS+RESQRQQSLTTKA+RT+C L TSK+AIDK N +V AFN GR TGPT Sbjct 61 ASVSASSVTSSVRESQRQQSLTTKAVRTACATLITTSKNAIDKTNEFVKAFNAGRGTGPT 120 Query 121 EGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDR 180 EGPAIDALN+SA+TV S S A+S Q+ DA NAY+DAARAVANAIG HA T EFN+RVD+ Sbjct 121 EGPAIDALNDSATTVGNSFSDAMSQQIKDAFNAYIDAARAVANAIGTHAGTGEFNKRVDQ 180 Query 181 LNDTKTKALTMCVA 194 LNDTK A+ +C+A Sbjct 181 LNDTKKNAVKLCLA 194 >gi|240170075|ref|ZP_04748734.1| hypothetical protein MkanA1_12231 [Mycobacterium kansasii ATCC 12478] Length=200 Score = 254 bits (649), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 150/200 (75%), Positives = 171/200 (86%), Gaps = 4/200 (2%) Query 1 VLIGWRAVPRRHGGELP----RRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYR 56 +LIGWRAV RRH G + RR A GCIA LLM I+GCT+VT+GTA PDT VAPAYR Sbjct 1 MLIGWRAVARRHAGVVASLNARRVARVCGCIAALLMAILGCTSVTEGTATPDTKVAPAYR 60 Query 57 SSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRN 116 SSVS S+SAS+ATSSIRESQRQQSLTTKAIR+SC+ LA TSKDAIDKVNA+V+AFN GR+ Sbjct 61 SSVSVSLSASSATSSIRESQRQQSLTTKAIRSSCETLATTSKDAIDKVNAFVSAFNAGRS 120 Query 117 TGPTEGPAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNR 176 TGPTEGPAI+ALN+SAS+V+GSLS ALS ++ DALNAY DAA AVANAIG HA T EFNR Sbjct 121 TGPTEGPAIEALNDSASSVTGSLSDALSREMRDALNAYADAALAVANAIGTHAPTGEFNR 180 Query 177 RVDRLNDTKTKALTMCVAAF 196 RVD+LNDTKTKAL MC+A+F Sbjct 181 RVDQLNDTKTKALKMCMASF 200 >gi|296166131|ref|ZP_06848576.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898540|gb|EFG78101.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=167 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 131/167 (79%), Positives = 146/167 (88%), Gaps = 0/167 (0%) Query 30 LLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTS 89 +LMGIVGCTTVT+GTA PDT VAPAYR SVSASVSAS+ATS +RESQRQQSLTT+A+RTS Sbjct 1 MLMGIVGCTTVTNGTATPDTQVAPAYRQSVSASVSASSATSRVRESQRQQSLTTRAVRTS 60 Query 90 CDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSAALSAQLGD 149 CD LA +SKDAIDKVN +V AFN GRNTGPTEGPAIDALN+SA TV S++ ALS L D Sbjct 61 CDTLATSSKDAIDKVNVFVGAFNAGRNTGPTEGPAIDALNSSADTVGNSVNDALSQPLKD 120 Query 150 ALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVAAF 196 A NAY+DAARAVANAIG HA+T EFNRRVDRLND KTKAL +C+AAF Sbjct 121 AFNAYIDAARAVANAIGTHAATGEFNRRVDRLNDAKTKALKLCLAAF 167 >gi|254774907|ref|ZP_05216423.1| hypothetical protein MaviaA2_09570 [Mycobacterium avium subsp. avium ATCC 25291] Length=174 Score = 237 bits (604), Expect = 8e-61, Method: Compositional matrix adjust. Identities = 125/173 (73%), Positives = 149/173 (87%), Gaps = 0/173 (0%) Query 22 LALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSL 81 +ALGC+A L+GIVGCT+VT+GTA PDT VAPAYR SVSASVSAS+ TSS+RESQRQQSL Sbjct 1 MALGCVAAALIGIVGCTSVTNGTATPDTRVAPAYRQSVSASVSASSVTSSVRESQRQQSL 60 Query 82 TTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSA 141 TTKA+RT+C AL TSK+AIDK N +V AFN GR TGPTEGPAIDALN+SA+TV+ S + Sbjct 61 TTKAVRTACAALVTTSKNAIDKTNEFVQAFNSGRGTGPTEGPAIDALNDSANTVANSFND 120 Query 142 ALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVA 194 A+S Q+ DA NAY+DAA AVANAIG HAST+EFN+RVD+LNDTK KA+ +C+A Sbjct 121 AMSQQIKDAFNAYIDAAHAVANAIGTHASTSEFNKRVDQLNDTKKKAIQLCLA 173 >gi|118463755|ref|YP_881406.1| hypothetical protein MAV_2197 [Mycobacterium avium 104] gi|118165042|gb|ABK65939.1| conserved hypothetical protein [Mycobacterium avium 104] Length=169 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 121/168 (73%), Positives = 144/168 (86%), Gaps = 0/168 (0%) Query 27 IALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAI 86 +A L+GIVGCT+VT+GTA PDT VAPAYR SVSASVSAS+ TSS+RESQRQQSLTTKA+ Sbjct 1 MAAALIGIVGCTSVTNGTATPDTRVAPAYRQSVSASVSASSVTSSVRESQRQQSLTTKAV 60 Query 87 RTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSAALSAQ 146 RT+C AL TSK+AIDK N +V AFN GR TGPTEGPAIDALN+SA+TV+ S + A+S Q Sbjct 61 RTACAALVTTSKNAIDKTNEFVQAFNSGRGTGPTEGPAIDALNDSANTVANSFNDAMSQQ 120 Query 147 LGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVA 194 + DA NAY+DAA AVANAIG HAST+EFN+RVD+LNDTK KA+ +C+A Sbjct 121 IKDAFNAYIDAAHAVANAIGTHASTSEFNKRVDQLNDTKKKAIQLCLA 168 >gi|254819065|ref|ZP_05224066.1| hypothetical protein MintA_04016 [Mycobacterium intracellulare ATCC 13950] Length=164 Score = 222 bits (565), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 118/163 (73%), Positives = 141/163 (87%), Gaps = 0/163 (0%) Query 32 MGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCD 91 MGIVGCT+VT+GTA PDT VAPAYR SVSASVSAS+ATSS+RESQRQQSLTTKA+RT+C Sbjct 1 MGIVGCTSVTNGTATPDTKVAPAYRQSVSASVSASSATSSVRESQRQQSLTTKAVRTACA 60 Query 92 ALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSLSAALSAQLGDAL 151 +L TSK+AIDK N +V AFN GR TGPTEGPAIDALN+SA+TV+ S + A+S Q+ DA Sbjct 61 SLITTSKNAIDKTNEFVQAFNSGRGTGPTEGPAIDALNDSATTVANSFNDAMSQQIKDAF 120 Query 152 NAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVA 194 NAY+DAA +VANAIG HA T+EFN+RVD+LNDTK KA+ +C+A Sbjct 121 NAYIDAAHSVANAIGTHAGTSEFNKRVDQLNDTKKKAIKLCLA 163 >gi|333990296|ref|YP_004522910.1| hypothetical protein JDM601_1656 [Mycobacterium sp. JDM601] gi|333486264|gb|AEF35656.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=177 Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 97/175 (56%), Positives = 125/175 (72%), Gaps = 0/175 (0%) Query 20 GALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQ 79 GAL G A L MG+VGCT++ G DT+ APAYRSSVSASVSAS ATSSIRE+QRQQ Sbjct 2 GALVAGGTAALAMGVVGCTSIIGGNPQADTSAAPAYRSSVSASVSASEATSSIRETQRQQ 61 Query 80 SLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEGPAIDALNNSASTVSGSL 139 S+TT+A+R +C A++S DA+D VN YV AFN G + T GPA++ALN+SA V+G++ Sbjct 62 SMTTQAVRGACGRFASSSSDAVDTVNKYVEAFNNGGDIPGTAGPAVEALNHSADEVAGAI 121 Query 140 SAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVA 194 + LSA+L DA N YV+AAR VANAI + A + +N R D LN + K + +C A Sbjct 122 NEKLSAELTDAFNTYVEAARGVANAISSKAPVSVYNARKDELNRAREKGMQLCRA 176 >gi|118471921|ref|YP_888597.1| hypothetical protein MSMEG_4322 [Mycobacterium smegmatis str. MC2 155] gi|118173208|gb|ABK74104.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=176 Score = 150 bits (379), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/176 (52%), Positives = 114/176 (65%), Gaps = 1/176 (0%) Query 22 LALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSL 81 +ALG A++ M +VGC+TVT GTA D AP YR+SVSAS+ AS+ TS+ RES+RQ +L Sbjct 1 MALGGSAVIAMVVVGCSTVTGGTAQVDPAEAPVYRASVSASIEASSLTSAARESERQATL 60 Query 82 TTKAIRTSCDALAATSKDAIDKVNAYV-AAFNQGRNTGPTEGPAIDALNNSASTVSGSLS 140 T +AI T C+ L+ +S DAID VN Y+ AA N + GPA+DALN SA V+ +S Sbjct 61 TKRAIHTVCEDLSTSSVDAIDAVNTYIEAANNNSPDVRAKAGPAVDALNRSADLVTSGIS 120 Query 141 AALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVAAF 196 L A L DAL +VDA RAVA+AI AS FN DR N +T AL C AA+ Sbjct 121 DTLPADLRDALTEWVDAVRAVASAISGDASPDVFNAASDRSNSARTAALDRCDAAY 176 >gi|108800327|ref|YP_640524.1| hypothetical protein Mmcs_3361 [Mycobacterium sp. MCS] gi|119869455|ref|YP_939407.1| hypothetical protein Mkms_3423 [Mycobacterium sp. KMS] gi|126435950|ref|YP_001071641.1| hypothetical protein Mjls_3372 [Mycobacterium sp. JLS] gi|108770746|gb|ABG09468.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119695544|gb|ABL92617.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126235750|gb|ABN99150.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=179 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 89/174 (52%), Positives = 113/174 (65%), Gaps = 1/174 (0%) Query 24 LGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTT 83 LG +A M IVGCT+VT G+ D AP YR+SVSASV S A SS RES+RQQSLTT Sbjct 6 LGSLAAAAMVIVGCTSVTSGSGQVDREAAPVYRASVSASVEESIAQSSARESRRQQSLTT 65 Query 84 KAIRTSCDALAATSKDAIDKVNAYVAAFNQGR-NTGPTEGPAIDALNNSASTVSGSLSAA 142 AI T+C+ L+++S +AI VNAYV A N+ G GPA++ALN SA V+ +S Sbjct 66 AAIHTACEDLSSSSVNAIGAVNAYVDAVNENTPEVGVRAGPAVEALNISADLVATGISDV 125 Query 143 LSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVAAF 196 L+ +L DAL A+V AAR VA I A EFN V RLND++ AL +C A++ Sbjct 126 LTPELRDALGAWVGAARDVAGTITRDAGPDEFNDAVTRLNDSREVALELCDASY 179 >gi|315443828|ref|YP_004076707.1| hypothetical protein Mspyr1_22220 [Mycobacterium sp. Spyr1] gi|315262131|gb|ADT98872.1| hypothetical protein Mspyr1_22220 [Mycobacterium sp. Spyr1] Length=192 Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 92/194 (48%), Positives = 122/194 (63%), Gaps = 7/194 (3%) Query 4 GWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASV 63 GW PR R L G A+L M +VGCT VTDG A AP YR+SV+A+ Sbjct 4 GWLTAPR------VRLAGLVTGTSAVLAMVVVGCTNVTDGDAAVADGEAPLYRASVTAAS 57 Query 64 SASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQG-RNTGPTEG 122 +AA+SS RE++RQ SLT +A+RTSC+A++++S +A+ VN YV A N + T G Sbjct 58 EEAAASSSAREAERQASLTVEAVRTSCEAMSSSSAEAVGSVNNYVDAMNNSPADVARTAG 117 Query 123 PAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLN 182 PA+DALN+SA V+GSLS L+++L DALN +VDAAR VA AI + FN ++ LN Sbjct 118 PAVDALNHSADLVAGSLSDPLTSELRDALNGWVDAARGVATAIAGNYGIDAFNAAIEVLN 177 Query 183 DTKTKALTMCVAAF 196 KT AL C AA+ Sbjct 178 RAKTTALDRCDAAY 191 >gi|145223369|ref|YP_001134047.1| hypothetical protein Mflv_2782 [Mycobacterium gilvum PYR-GCK] gi|145215855|gb|ABP45259.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=192 Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/194 (48%), Positives = 122/194 (63%), Gaps = 7/194 (3%) Query 4 GWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASV 63 GW PR R L G A+L M +VGCT VTDG A AP YR+SV+A+ Sbjct 4 GWLTAPR------VRLAGLVTGTSAVLAMVVVGCTYVTDGDAAVADGEAPLYRASVTAAS 57 Query 64 SASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQG-RNTGPTEG 122 +AA+SS RE++RQ SLT +A+RTSC+A++++S +A+ VN YV A N + T G Sbjct 58 EEAAASSSAREAERQASLTVEAVRTSCEAMSSSSAEAVGSVNNYVDAMNNSPADVARTAG 117 Query 123 PAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLN 182 PA+DALN+SA V+GSLS L+++L DALN +VDAAR VA AI + FN ++ LN Sbjct 118 PAVDALNHSADLVAGSLSDPLTSELRDALNGWVDAARGVATAIAGNYGIDAFNAAIEVLN 177 Query 183 DTKTKALTMCVAAF 196 KT AL C AA+ Sbjct 178 RAKTTALDRCDAAY 191 >gi|120404710|ref|YP_954539.1| hypothetical protein Mvan_3751 [Mycobacterium vanbaalenii PYR-1] gi|119957528|gb|ABM14533.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=182 Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/180 (55%), Positives = 124/180 (69%), Gaps = 1/180 (0%) Query 18 RRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQR 77 R A G A L M +VGCT TDG A AP YR+SVSAS+ SAA+SS RES+R Sbjct 2 RLAAFVTGMCATLAMIVVGCTNFTDGDAAVAEGEAPLYRASVSASIEESAASSSARESER 61 Query 78 QQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQG-RNTGPTEGPAIDALNNSASTVS 136 Q SLT +A+ TSC+AL+++S +AI VNAYV AFN+ + T GPA+DALN+SA V+ Sbjct 62 QTSLTVEAVHTSCEALSSSSAEAIGAVNAYVDAFNENAADIERTAGPAVDALNHSADLVA 121 Query 137 GSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVAAF 196 GS+S L A+L DALN++VDAARAVA AI + T EFN + RLND+KT AL C AA+ Sbjct 122 GSISDPLPAELRDALNSWVDAARAVATAIAGNYPTDEFNAAISRLNDSKTTALDRCDAAY 181 >gi|298525732|ref|ZP_07013141.1| hypothetical protein TBAG_03957 [Mycobacterium tuberculosis 94_M4241A] gi|298495526|gb|EFI30820.1| hypothetical protein TBAG_03957 [Mycobacterium tuberculosis 94_M4241A] Length=152 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 64/65 (99%), Positives = 64/65 (99%), Gaps = 0/65 (0%) Query 1 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 60 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS Sbjct 70 VLIGWRAVPRRHGGELPRRGALALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVS 129 Query 61 ASVSA 65 ASVS Sbjct 130 ASVSG 134 >gi|169628973|ref|YP_001702622.1| hypothetical protein MAB_1885 [Mycobacterium abscessus ATCC 19977] gi|169240940|emb|CAM61968.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=185 Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 52/161 (33%), Positives = 78/161 (49%), Gaps = 8/161 (4%) Query 36 GCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRESQRQQSLTTKAIRTSCDALAA 95 GCT T G A + YR+ VS SV AS + ES+RQ++ +A +C+ A Sbjct 20 GCTVATGGQASAPSESVSEYRTFVSQSVEASRS----EESKRQETSRAQAQADACETFAM 75 Query 96 TSKDAIDKVNAYVAAFNQGRNTGPTE----GPAIDALNNSASTVSGSLSAALSAQLGDAL 151 TS A+ N ++ N G + GP I+ALN SA + + A + +L DAL Sbjct 76 TSDAAVSAGNDLISVMNDEGGYGSSAEAKVGPVINALNTSAGQIDSVKAKAQTDELRDAL 135 Query 152 NAYVDAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMC 192 YV+ +R +A A S++ N V ND + +A +C Sbjct 136 TQYVEQSRKLAGAFDNRLSSSTLNAVVRTFNDARERAGKIC 176 >gi|54026814|ref|YP_121056.1| hypothetical protein nfa48400 [Nocardia farcinica IFM 10152] gi|54018322|dbj|BAD59692.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=177 Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust. Identities = 31/99 (32%), Positives = 46/99 (47%), Gaps = 7/99 (7%) Query 100 AIDKVNAYVAAFNQGRNTGPTEGP----AIDALNNSASTVSGSLSAALSAQLGDALNAYV 155 ++D NAY+ A G N P P A+ AL + A +V L+ + A + + L AY Sbjct 81 SVDTFNAYIDA---GNNNAPDAEPKADAAVRALRDGARSVDQKLTRDVPAAVAEPLRAYR 137 Query 156 DAARAVANAIGAHASTAEFNRRVDRLNDTKTKALTMCVA 194 D A+A+ + A N +D+ N TK A C A Sbjct 138 DDTNALADTLERRADVDTLNAAIDKFNATKDGARDACRA 176 >gi|226307156|ref|YP_002767116.1| hypothetical protein RER_36690 [Rhodococcus erythropolis PR4] gi|226186273|dbj|BAH34377.1| hypothetical protein RER_36690 [Rhodococcus erythropolis PR4] Length=186 Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust. Identities = 49/190 (26%), Positives = 83/190 (44%), Gaps = 10/190 (5%) Query 4 GWRAVPRRHGGELPRRGA-LALGCIALLLMGIVGCTTVTDGTAMPDTNVAPAYRSSVSAS 62 GW + + R GA +++G IA+ L IVGC+ G+A+P+ AY+S VS S Sbjct 3 GWEKINKEIN--YGRVGAWVSVGSIAVGLSVIVGCSAAVTGSAVPNEAHVAAYQSEVSVS 60 Query 63 VSASAATSSIRESQRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRNTGPTEG 122 ++A++++ + ++ C+ + SK+ + NAYV A N G E Sbjct 61 MAAASSSKAAADAAEAAFAI-------CEEAVSRSKNDVVAFNAYVDAGNHGETDLRAEA 113 Query 123 PAIDALNNSASTVSGSLSAALSAQLGDALNAYVDAARAVANAIGAHASTAEFNRRVDRLN 182 A + ++ S+++ L AQL + R+ A I + S E N D N Sbjct 114 SAAASSARDTASWFDSVASELPAQLSGLFDELAANLRSSAVVIESDHSADEINSISDTSN 173 Query 183 DTKTKALTMC 192 + C Sbjct 174 SIRKSIFDEC 183 >gi|296394787|ref|YP_003659671.1| hypothetical protein Srot_2396 [Segniliparus rotundus DSM 44985] gi|296181934|gb|ADG98840.1| hypothetical protein Srot_2396 [Segniliparus rotundus DSM 44985] Length=167 Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust. Identities = 20/70 (29%), Positives = 34/70 (49%), Gaps = 4/70 (5%) Query 117 TGPTEGPAIDALNNSASTVSGSLSAALSAQLGDAL----NAYVDAARAVANAIGAHASTA 172 + P P DAL + + AA++ QL D+L +YV R+ A+ + H S + Sbjct 84 SDPQAAPKADALAKEFRDGAAKIEAAITPQLADSLAENLRSYVKIVRSFADVLERHGSNS 143 Query 173 EFNRRVDRLN 182 EF+ D ++ Sbjct 144 EFDEHADAMS 153 >gi|54023580|ref|YP_117822.1| hypothetical protein nfa16120 [Nocardia farcinica IFM 10152] gi|54015088|dbj|BAD56458.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=207 Score = 35.0 bits (79), Expect = 5.6, Method: Compositional matrix adjust. Identities = 48/186 (26%), Positives = 77/186 (42%), Gaps = 15/186 (8%) Query 17 PRRGALALGCIALLLMGIV-GCTTVTDGTAMPDTNVAPAYRSSVSASVSASAATSSIRES 75 PRR L A+L ++ GC GTA+PDT Y++ ++S +A+ ++ Sbjct 28 PRRVGLVCAACAVLTGAVLAGCGDRVQGTALPDTVQVSIYKTEAASSSAAATSSRR---- 83 Query 76 QRQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFN-QGRNTGPTEGPAIDALNNSAST 134 + +AI +C A T+ + N +V A + + A L+ +A T Sbjct 84 ---AAAQAQAIGENCGAFPNTTGAGVRAYNEFVDAHDANAPDYAAKRDAAAQTLDGAAGT 140 Query 135 VSGSLSAA---LSAQLGDALNAYVDAARAVANA---IGAHASTAEFNRRVDRLNDTKTKA 188 V ++AA L L YV AAR +A + HA+ N R+ND + Sbjct 141 VEAGVNAAGESLPPDLAAKFIEYVSAARQLAEETRKMSYHANVDALNAASLRVNDARNAV 200 Query 189 LTMCVA 194 C A Sbjct 201 REACPA 206 >gi|308186345|ref|YP_003930476.1| RND efflux system, outer membrane protein precursor [Pantoea vagans C9-1] gi|308056855|gb|ADO09027.1| Probable RND efflux system, outer membrane protein precursor [Pantoea vagans C9-1] Length=460 Score = 34.3 bits (77), Expect = 8.8, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%) Query 19 RGALALGCIALLLMGIVGCTTVTDG--TAMPDTNVAPAYRSSVSASVSASAATSSIRESQ 76 R L +G +ALLL GC T + +++P + A+R+SV S + AA + Sbjct 2 RVRLLIGVMALLL---TGCATQVEKAPSSLP---IPDAWRNSVGPSAAPEAAWWRAFHDE 55 Query 77 RQQSLTTKAIRTSCDALAATSKDAIDKVNAYVAAFNQGRN 116 L T+A+R + D L A S+ +D+ A + A QG N Sbjct 56 YLNRLVTQALRNNPDILTARSR--VDQYRAQLRA-TQGDN 92 Lambda K H 0.315 0.124 0.345 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 205411802368 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40