BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2242 Length=414 Score E Sequences producing significant alignments: (Bits) Value gi|15609379|ref|NP_216758.1| hypothetical protein Rv2242 [Mycoba... 830 0.0 gi|121638124|ref|YP_978348.1| hypothetical protein BCG_2259 [Myc... 829 0.0 gi|240170077|ref|ZP_04748736.1| hypothetical protein MkanA1_1224... 749 0.0 gi|183983325|ref|YP_001851616.1| hypothetical protein MMAR_3335 ... 723 0.0 gi|118617006|ref|YP_905338.1| hypothetical protein MUL_1307 [Myc... 719 0.0 gi|296166133|ref|ZP_06848578.1| regulator of polyketide synthase... 716 0.0 gi|254819067|ref|ZP_05224068.1| hypothetical protein MintA_04026... 713 0.0 gi|15827870|ref|NP_302133.1| hypothetical protein ML1652 [Mycoba... 703 0.0 gi|41408093|ref|NP_960929.1| hypothetical protein MAP1995 [Mycob... 701 0.0 gi|118465848|ref|YP_881404.1| hypothetical protein MAV_2195 [Myc... 701 0.0 gi|336461855|gb|EGO40711.1| regulator of polyketide synthase exp... 700 0.0 gi|342857267|ref|ZP_08713923.1| hypothetical protein MCOL_00275 ... 697 0.0 gi|289758366|ref|ZP_06517744.1| conserved hypothetical protein [... 653 0.0 gi|333990293|ref|YP_004522907.1| hypothetical protein JDM601_165... 647 0.0 gi|289762406|ref|ZP_06521784.1| conserved hypothetical protein [... 639 0.0 gi|289750840|ref|ZP_06510218.1| conserved hypothetical protein [... 612 3e-173 gi|108800329|ref|YP_640526.1| hypothetical protein Mmcs_3363 [My... 597 2e-168 gi|119869457|ref|YP_939409.1| hypothetical protein Mkms_3425 [My... 595 7e-168 gi|120404712|ref|YP_954541.1| hypothetical protein Mvan_3753 [My... 588 7e-166 gi|118468199|ref|YP_888599.1| hypothetical protein MSMEG_4324 [M... 587 1e-165 gi|315443826|ref|YP_004076705.1| regulator of polyketide synthas... 585 5e-165 gi|145223367|ref|YP_001134045.1| hypothetical protein Mflv_2780 ... 583 2e-164 gi|169628968|ref|YP_001702617.1| hypothetical protein MAB_1880c ... 543 3e-152 gi|262203011|ref|YP_003274219.1| Regulator of polyketide synthas... 493 3e-137 gi|54023582|ref|YP_117824.1| hypothetical protein nfa16140 [Noca... 488 1e-135 gi|226360335|ref|YP_002778113.1| CdaR family transcriptional reg... 480 2e-133 gi|254551287|ref|ZP_05141734.1| hypothetical protein Mtube_12630... 480 2e-133 gi|111018210|ref|YP_701182.1| hypothetical protein RHA1_ro01198 ... 479 3e-133 gi|312140256|ref|YP_004007592.1| hypothetical protein REQ_28940 ... 478 6e-133 gi|229490302|ref|ZP_04384144.1| CdaR family transcriptional regu... 476 4e-132 gi|226307158|ref|YP_002767118.1| CdaR family transcriptional reg... 473 2e-131 gi|326382457|ref|ZP_08204148.1| Regulator of polyketide synthase... 468 1e-129 gi|333918897|ref|YP_004492478.1| hypothetical protein AS9A_1226 ... 464 9e-129 gi|296140417|ref|YP_003647660.1| PucR family transcriptional reg... 451 7e-125 gi|343924114|ref|ZP_08763677.1| putative CdaR family transcripti... 451 2e-124 gi|296395116|ref|YP_003660000.1| PucR family transcriptional reg... 414 1e-113 gi|317509072|ref|ZP_07966701.1| hypothetical protein HMPREF9336_... 410 3e-112 gi|257055082|ref|YP_003132914.1| regulator of polyketide synthas... 350 2e-94 gi|254551286|ref|ZP_05141733.1| hypothetical protein Mtube_12623... 343 5e-92 gi|256375466|ref|YP_003099126.1| PucR family transcriptional reg... 339 5e-91 gi|340525424|gb|AEK40629.1| hypothetical protein RAM_10695 [Amyc... 336 4e-90 gi|300784021|ref|YP_003764312.1| hypothetical protein AMED_2104 ... 336 5e-90 gi|134098113|ref|YP_001103774.1| regulator of polyketide synthas... 315 7e-84 gi|302525291|ref|ZP_07277633.1| conserved hypothetical protein [... 300 4e-79 gi|337765501|emb|CCB74210.1| conserved protein of unknown functi... 296 6e-78 gi|329934760|ref|ZP_08284801.1| hypothetical protein SGM_0513 [S... 293 3e-77 gi|302534251|ref|ZP_07286593.1| conserved hypothetical protein [... 291 1e-76 gi|254382856|ref|ZP_04998212.1| conserved hypothetical protein [... 290 2e-76 gi|182438902|ref|YP_001826621.1| hypothetical protein SGR_5109 [... 288 1e-75 gi|239987410|ref|ZP_04708074.1| hypothetical protein SrosN1_0890... 287 2e-75 >gi|15609379|ref|NP_216758.1| hypothetical protein Rv2242 [Mycobacterium tuberculosis H37Rv] gi|15841735|ref|NP_336772.1| hypothetical protein MT2302 [Mycobacterium tuberculosis CDC1551] gi|31793422|ref|NP_855915.1| hypothetical protein Mb2266 [Mycobacterium bovis AF2122/97] 68 more sequence titles Length=414 Score = 830 bits (2144), Expect = 0.0, Method: Compositional matrix adjust. Identities = 413/414 (99%), Positives = 414/414 (100%), Gaps = 0/414 (0%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 +NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR Sbjct 1 MNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE Sbjct 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG Sbjct 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 Query 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL Sbjct 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 Query 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA Sbjct 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 Query 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA Sbjct 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 Query 361 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH Sbjct 361 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 >gi|121638124|ref|YP_978348.1| hypothetical protein BCG_2259 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224990618|ref|YP_002645305.1| hypothetical protein JTY_2253 [Mycobacterium bovis BCG str. Tokyo 172] gi|121493772|emb|CAL72247.1| Conserved hypothetical protein [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224773731|dbj|BAH26537.1| hypothetical protein JTY_2253 [Mycobacterium bovis BCG str. Tokyo 172] gi|341602162|emb|CCC64836.1| conserved hypothetical protein [Mycobacterium bovis BCG str. Moreau RDJ] Length=414 Score = 829 bits (2142), Expect = 0.0, Method: Compositional matrix adjust. Identities = 412/414 (99%), Positives = 413/414 (99%), Gaps = 0/414 (0%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 +NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR Sbjct 1 MNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE Sbjct 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG Sbjct 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 Query 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL Sbjct 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 Query 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA Sbjct 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 Query 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA Sbjct 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 Query 361 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 IE CARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH Sbjct 361 IETCARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 >gi|240170077|ref|ZP_04748736.1| hypothetical protein MkanA1_12241 [Mycobacterium kansasii ATCC 12478] Length=443 Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/421 (92%), Positives = 398/421 (95%), Gaps = 7/421 (1%) Query 1 VNDNQLAP-------VARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFA 53 +NDNQ +P +A RSPLELLDTVPDSLLRRLKQYSGRLATEAVS MQERLPFFA Sbjct 1 MNDNQFSPQFSPLAKLASSRSPLELLDTVPDSLLRRLKQYSGRLATEAVSVMQERLPFFA 60 Query 54 DLEASQRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVR 113 DLEASQRASVALVVQTAVVNFVEWM DPHSDV YTAQAFELVPQDLTRRIALR TVDMVR Sbjct 61 DLEASQRASVALVVQTAVVNFVEWMQDPHSDVSYTAQAFELVPQDLTRRIALRHTVDMVR 120 Query 114 VTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASV 173 VTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAA+AYADAAEARGTWDSRMEASV Sbjct 121 VTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAASAYADAAEARGTWDSRMEASV 180 Query 174 VDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAA 233 VDAVVRGDTGPELLSRAAALNWDTTAPATV+VGTPAPG +GSN++ S+RASQDVRD AA Sbjct 181 VDAVVRGDTGPELLSRAAALNWDTTAPATVVVGTPAPGRDGSNNEDGSKRASQDVRDIAA 240 Query 234 RHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASE 293 RHGRAALTDVHGTWLVAIVSG LSPT+KFLKDLL AF+D PVVIGPTAPMLTAA+ SASE Sbjct 241 RHGRAALTDVHGTWLVAIVSGHLSPTDKFLKDLLEAFSDGPVVIGPTAPMLTAAYHSASE 300 Query 294 AISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDA 353 AISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDA Sbjct 301 AISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDA 360 Query 354 YLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 413 YLDCGGAIEACARKLFVHPNT+RYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYP P Sbjct 361 YLDCGGAIEACARKLFVHPNTIRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPAP 420 Query 414 H 414 H Sbjct 421 H 421 >gi|183983325|ref|YP_001851616.1| hypothetical protein MMAR_3335 [Mycobacterium marinum M] gi|183176651|gb|ACC41761.1| conserved hypothetical protein [Mycobacterium marinum M] Length=436 Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/416 (91%), Positives = 390/416 (94%), Gaps = 6/416 (1%) Query 1 VNDNQLAPVAR---PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEA 57 +NDNQ + +AR RSPLELL+TVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEA Sbjct 1 MNDNQFSAIARLGSARSPLELLETVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEA 60 Query 58 SQRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTME 117 SQRASVALVVQTAVVNF EWM +P SDV YTAQAFELVPQDLTRRIALR TVDMVRVTME Sbjct 61 SQRASVALVVQTAVVNFAEWMQNPRSDVSYTAQAFELVPQDLTRRIALRHTVDMVRVTME 120 Query 118 FFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAV 177 FFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAA+AYADAAEARGTWDSRMEASVVDAV Sbjct 121 FFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAASAYADAAEARGTWDSRMEASVVDAV 180 Query 178 VRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGR 237 VRGDTGPELLSRAAALNWDTTAPATV+VGTPA +GS+ SERA QDVRD AA+HGR Sbjct 181 VRGDTGPELLSRAAALNWDTTAPATVVVGTPASARDGSDG---SERAIQDVRDAAAQHGR 237 Query 238 AALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISG 297 AALTDVHGTWLVAIVSG LSPT+K KDLL AF+D PVVIGPTAPMLTAA+ SASEAISG Sbjct 238 AALTDVHGTWLVAIVSGHLSPTDKVFKDLLEAFSDGPVVIGPTAPMLTAAYHSASEAISG 297 Query 298 MNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDC 357 MNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDC Sbjct 298 MNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDC 357 Query 358 GGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 413 GGAIEACARKLFVHPNT+RYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP Sbjct 358 GGAIEACARKLFVHPNTIRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 413 >gi|118617006|ref|YP_905338.1| hypothetical protein MUL_1307 [Mycobacterium ulcerans Agy99] gi|118569116|gb|ABL03867.1| conserved hypothetical protein [Mycobacterium ulcerans Agy99] Length=436 Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/416 (91%), Positives = 390/416 (94%), Gaps = 6/416 (1%) Query 1 VNDNQLAPVAR---PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEA 57 +N+NQ + +AR RSPLELL+TVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEA Sbjct 1 MNNNQFSAIARLGSARSPLELLETVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEA 60 Query 58 SQRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTME 117 SQRASVALVVQTAVVNF EWM +P SDV YTAQAFELVPQDLTRRIALR TVDMVRVTME Sbjct 61 SQRASVALVVQTAVVNFAEWMQNPRSDVSYTAQAFELVPQDLTRRIALRHTVDMVRVTME 120 Query 118 FFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAV 177 FFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAA+AYADAAEARGTWDSRMEASVVDAV Sbjct 121 FFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAASAYADAAEARGTWDSRMEASVVDAV 180 Query 178 VRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGR 237 VRGDTGPELLSRAAALNWDTTAPATV+VGTPA +G SDG SERA QDVRD AA+HGR Sbjct 181 VRGDTGPELLSRAAALNWDTTAPATVVVGTPASARDG--SDG-SERAIQDVRDAAAQHGR 237 Query 238 AALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISG 297 AALTDVHGTWLVAIVSG LSPT+K KDLL AF+D PVVIGPTAPMLTAA+ SASEAISG Sbjct 238 AALTDVHGTWLVAIVSGHLSPTDKVFKDLLEAFSDGPVVIGPTAPMLTAAYHSASEAISG 297 Query 298 MNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDC 357 MNAVAGWRGA RPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDC Sbjct 298 MNAVAGWRGASRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDC 357 Query 358 GGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 413 GGAIEACARKLFVHPNT+RYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP Sbjct 358 GGAIEACARKLFVHPNTIRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 413 >gi|296166133|ref|ZP_06848578.1| regulator of polyketide synthase expression family protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295898542|gb|EFG78103.1| regulator of polyketide synthase expression family protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=441 Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/414 (89%), Positives = 388/414 (94%), Gaps = 2/414 (0%) Query 1 VNDNQLA-PVAR-PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEAS 58 +NDN A P A+ PRSPLE+L+TVPDS+LRRLKQYSGRLATEAVS MQ+RLPFFADLEAS Sbjct 1 MNDNPFAGPFAKQPRSPLEMLNTVPDSVLRRLKQYSGRLATEAVSVMQDRLPFFADLEAS 60 Query 59 QRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEF 118 QRASVALVVQTA+ NFVEWM DPHS+V YTAQAFELVPQDL RRIALR +VDMVRVTMEF Sbjct 61 QRASVALVVQTAINNFVEWMQDPHSNVSYTAQAFELVPQDLARRIALRHSVDMVRVTMEF 120 Query 119 FEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 178 FEEV+PL+ARSEEQLTALTVG+LKYSRDLAFTAA+AYA+AAEARGTWDSRMEASVVDAVV Sbjct 121 FEEVLPLVARSEEQLTALTVGVLKYSRDLAFTAASAYANAAEARGTWDSRMEASVVDAVV 180 Query 179 RGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA 238 RGDTGPELLSRAAALNWDTTAPATV+VG PAPG +GS GD +RASQ VRD AA+HGRA Sbjct 181 RGDTGPELLSRAAALNWDTTAPATVVVGVPAPGRDGSTGPGDDQRASQHVRDIAAQHGRA 240 Query 239 ALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGM 298 ALTDVHGTWLVAIVSGQLSPT+KFL DLL AF+D PVVIGPTAPMLTAA+ SASEAISGM Sbjct 241 ALTDVHGTWLVAIVSGQLSPTDKFLGDLLQAFSDGPVVIGPTAPMLTAAYHSASEAISGM 300 Query 299 NAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCG 358 NAV GWRGAPRPV ARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDAYLDCG Sbjct 301 NAVGGWRGAPRPVQARELLPERALMGDASAIVALHTDVMGPLADAGPTLIETLDAYLDCG 360 Query 359 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 412 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT Sbjct 361 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 414 >gi|254819067|ref|ZP_05224068.1| hypothetical protein MintA_04026 [Mycobacterium intracellulare ATCC 13950] Length=440 Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/414 (89%), Positives = 389/414 (94%), Gaps = 2/414 (0%) Query 1 VNDNQLA-PVAR-PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEAS 58 ++DN A P A+ PRSPLE LD+VP+S+LRRLKQYSGRLATEAV+AMQ+RLPFFA+LEAS Sbjct 1 MSDNPFAGPFAKHPRSPLETLDSVPESVLRRLKQYSGRLATEAVNAMQDRLPFFAELEAS 60 Query 59 QRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEF 118 QRASVALVVQTAVVNFVEWM DPHS+V YTAQAFELVPQ+L RRIALR +VDMVRVTM+ Sbjct 61 QRASVALVVQTAVVNFVEWMQDPHSNVSYTAQAFELVPQELQRRIALRHSVDMVRVTMDI 120 Query 119 FEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 178 FEEVVPLLARSEEQLTALTVGILKY+RDLAFTAA AYADAAEARGTWDSRMEASVVDAVV Sbjct 121 FEEVVPLLARSEEQLTALTVGILKYTRDLAFTAAGAYADAAEARGTWDSRMEASVVDAVV 180 Query 179 RGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA 238 RGDTGPELLSRAAALNWDTT PATV+VGTPAPG +GS GDSERASQ VRD AA+HGRA Sbjct 181 RGDTGPELLSRAAALNWDTTEPATVVVGTPAPGRDGSTGPGDSERASQHVRDIAAQHGRA 240 Query 239 ALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGM 298 ALTDVHGTWLVAIVSGQLSPT+KFL +LLAAFAD PVV+GPTAPMLTAA+ SASEAISGM Sbjct 241 ALTDVHGTWLVAIVSGQLSPTDKFLGELLAAFADGPVVVGPTAPMLTAAYHSASEAISGM 300 Query 299 NAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCG 358 NAV GWRGAPRPVLARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDAYLDCG Sbjct 301 NAVGGWRGAPRPVLARELLPERALMGDASAIVALHTDVMGPLADAGPTLIETLDAYLDCG 360 Query 359 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 412 GAIEACARKLFVHPNTVRYRLKRITDFTGRDP QPRDAYVLRVAATVGQLNYPT Sbjct 361 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPMQPRDAYVLRVAATVGQLNYPT 414 >gi|15827870|ref|NP_302133.1| hypothetical protein ML1652 [Mycobacterium leprae TN] gi|221230347|ref|YP_002503763.1| hypothetical protein MLBr_01652 [Mycobacterium leprae Br4923] gi|3150232|emb|CAA19204.1| hypothetical protein MLCB1243.23c [Mycobacterium leprae] gi|13093422|emb|CAC30603.1| conserved hypothetical protein [Mycobacterium leprae] gi|219933454|emb|CAR71747.1| conserved hypothetical protein [Mycobacterium leprae Br4923] Length=414 Score = 703 bits (1815), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/414 (89%), Positives = 380/414 (92%), Gaps = 0/414 (0%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 +N N P R PLELLDTVPDSLLRRLKQYSGRLATEAV+AMQERLPFFADLEASQR Sbjct 1 MNHNHFVPAPPRRLPLELLDTVPDSLLRRLKQYSGRLATEAVTAMQERLPFFADLEASQR 60 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASV LVVQTAVVNFV+WM +PHSDV YTAQAFELVPQDL RRIALR TVDMVRVTMEFFE Sbjct 61 ASVTLVVQTAVVNFVQWMQNPHSDVSYTAQAFELVPQDLARRIALRHTVDMVRVTMEFFE 120 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG Sbjct 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 Query 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 DTGPELLSRAAALNWDTTAPATV+VGTP P +G N SERASQ+VR+ AARHGRAAL Sbjct 181 DTGPELLSRAAALNWDTTAPATVVVGTPTPNHDGPNGQVSSERASQEVREIAARHGRAAL 240 Query 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 TDVHGTWLVAI+SGQL+PT+KF DLL AF+D PVVIGPTAPMLTAA+ SASEA+SGMNA Sbjct 241 TDVHGTWLVAIISGQLAPTDKFFSDLLHAFSDGPVVIGPTAPMLTAAYHSASEAVSGMNA 300 Query 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 VAGW GAPRPV ARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDAYLDCGGA Sbjct 301 VAGWSGAPRPVQARELLPERALMGDASAIVALHTDVMLPLADAGPTLIETLDAYLDCGGA 360 Query 361 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 IEACARKLFVHPNTVRYRLKRITDFTG DPT PRDAYVLRVAATVG+LNYPT H Sbjct 361 IEACARKLFVHPNTVRYRLKRITDFTGHDPTLPRDAYVLRVAATVGKLNYPTHH 414 >gi|41408093|ref|NP_960929.1| hypothetical protein MAP1995 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41396448|gb|AAS04312.1| hypothetical protein MAP_1995 [Mycobacterium avium subsp. paratuberculosis K-10] Length=441 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 367/414 (89%), Positives = 388/414 (94%), Gaps = 2/414 (0%) Query 1 VNDNQLA-PVAR-PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEAS 58 +NDN A P+A+ PRSPLE LDTVP+S+LRRLKQYSGRLATEAVS MQ++LPFFADLEAS Sbjct 1 MNDNPFAGPIAKHPRSPLETLDTVPESVLRRLKQYSGRLATEAVSVMQDQLPFFADLEAS 60 Query 59 QRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEF 118 QRASV+LVVQTAVVNF EWM DP S+V +TAQAFELVPQDL RRIALR +V+MVRVTMEF Sbjct 61 QRASVSLVVQTAVVNFAEWMQDPKSNVRHTAQAFELVPQDLARRIALRHSVEMVRVTMEF 120 Query 119 FEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 178 FEEVVPLLARSEEQLTALTVG+LKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV Sbjct 121 FEEVVPLLARSEEQLTALTVGVLKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 180 Query 179 RGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA 238 RGDTGPELLSRAAALNWDTTAPATV+VGTPAPG +GS GDSERASQ VRD AA+HGRA Sbjct 181 RGDTGPELLSRAAALNWDTTAPATVVVGTPAPGRDGSTGPGDSERASQHVRDIAAQHGRA 240 Query 239 ALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGM 298 ALTDVHGTWLVAIVSGQLSPT+KFL DLL AF+D PVV+GPTAPMLTAA+ SASEAISGM Sbjct 241 ALTDVHGTWLVAIVSGQLSPTDKFLGDLLEAFSDGPVVVGPTAPMLTAAYHSASEAISGM 300 Query 299 NAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCG 358 NAV GWRGAPRPVLARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDA+LD G Sbjct 301 NAVGGWRGAPRPVLARELLPERALMGDASAIVALHTDVMGPLADAGPTLIETLDAFLDSG 360 Query 359 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 412 GAIEACARKLFVHPNTVRYRLKRITDFTGRDP QPRDAYVLRVAATVGQLNYPT Sbjct 361 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPMQPRDAYVLRVAATVGQLNYPT 414 >gi|118465848|ref|YP_881404.1| hypothetical protein MAV_2195 [Mycobacterium avium 104] gi|254774905|ref|ZP_05216421.1| hypothetical protein MaviaA2_09560 [Mycobacterium avium subsp. avium ATCC 25291] gi|118167135|gb|ABK68032.1| conserved hypothetical protein [Mycobacterium avium 104] Length=441 Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/414 (89%), Positives = 387/414 (94%), Gaps = 2/414 (0%) Query 1 VNDNQLA-PVAR-PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEAS 58 +NDN A P A+ PRSPLE LDTVP+S+LRRLKQYSGRLATEAVS MQ+RLPFFADLEAS Sbjct 1 MNDNPFAGPFAKHPRSPLETLDTVPESVLRRLKQYSGRLATEAVSVMQDRLPFFADLEAS 60 Query 59 QRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEF 118 QRASV+LVVQTAVVNF EWM DP S+V +TAQAFELVPQDL RRIALR +V+MVRVTMEF Sbjct 61 QRASVSLVVQTAVVNFAEWMQDPKSNVRHTAQAFELVPQDLARRIALRHSVEMVRVTMEF 120 Query 119 FEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 178 FEEVVPLLARSEEQLTALTVG+LKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV Sbjct 121 FEEVVPLLARSEEQLTALTVGVLKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 180 Query 179 RGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA 238 RGDTGPELLSRAAALNWDTTAPATV+VGTPAPG +GS GDSERASQ VRD AA+HGRA Sbjct 181 RGDTGPELLSRAAALNWDTTAPATVVVGTPAPGRDGSTGPGDSERASQHVRDIAAQHGRA 240 Query 239 ALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGM 298 ALTDVHGTWLVAIVSGQLSPT+KFL DLL AF+D PVV+GPTAPMLTAA+ SASEAISGM Sbjct 241 ALTDVHGTWLVAIVSGQLSPTDKFLGDLLEAFSDGPVVVGPTAPMLTAAYHSASEAISGM 300 Query 299 NAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCG 358 NAV GWRGAPRPVLARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDA+LD G Sbjct 301 NAVGGWRGAPRPVLARELLPERALMGDASAIVALHTDVMGPLADAGPTLIETLDAFLDSG 360 Query 359 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 412 GAIEACARKLFVHPNTVRYRLKRITDFTGRDP QPRDAYVLRVAATVGQLNYPT Sbjct 361 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPMQPRDAYVLRVAATVGQLNYPT 414 >gi|336461855|gb|EGO40711.1| regulator of polyketide synthase expression [Mycobacterium avium subsp. paratuberculosis S397] Length=461 Score = 700 bits (1807), Expect = 0.0, Method: Compositional matrix adjust. Identities = 368/414 (89%), Positives = 387/414 (94%), Gaps = 2/414 (0%) Query 1 VNDNQLA-PVAR-PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEAS 58 +NDN A P A+ PRSPLE LDTVP+S+LRRLKQYSGRLATEAVS MQ+RLPFFADLEAS Sbjct 1 MNDNPFAGPFAKHPRSPLETLDTVPESVLRRLKQYSGRLATEAVSVMQDRLPFFADLEAS 60 Query 59 QRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEF 118 QRASV+LVVQTAVVNF EWM DP S+V +TAQAFELVPQDL RRIALR +V+MVRVTMEF Sbjct 61 QRASVSLVVQTAVVNFAEWMQDPKSNVRHTAQAFELVPQDLARRIALRHSVEMVRVTMEF 120 Query 119 FEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 178 FEEVVPLLARSEEQLTALTVG+LKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV Sbjct 121 FEEVVPLLARSEEQLTALTVGVLKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 180 Query 179 RGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA 238 RGDTGPELLSRAAALNWDTTAPATV+VGTPAPG +GS GDSERASQ VRD AA+HGRA Sbjct 181 RGDTGPELLSRAAALNWDTTAPATVVVGTPAPGRDGSTGPGDSERASQHVRDIAAQHGRA 240 Query 239 ALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGM 298 ALTDVHGTWLVAIVSGQLSPT+KFL DLL AF+D PVV+GPTAPMLTAA+ SASEAISGM Sbjct 241 ALTDVHGTWLVAIVSGQLSPTDKFLGDLLEAFSDGPVVVGPTAPMLTAAYHSASEAISGM 300 Query 299 NAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCG 358 NAV GWRGAPRPVLARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDA+LD G Sbjct 301 NAVGGWRGAPRPVLARELLPERALMGDASAIVALHTDVMGPLADAGPTLIETLDAFLDSG 360 Query 359 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 412 GAIEACARKLFVHPNTVRYRLKRITDFTGRDP QPRDAYVLRVAATVGQLNYPT Sbjct 361 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPMQPRDAYVLRVAATVGQLNYPT 414 >gi|342857267|ref|ZP_08713923.1| hypothetical protein MCOL_00275 [Mycobacterium colombiense CECT 3035] gi|342134600|gb|EGT87766.1| hypothetical protein MCOL_00275 [Mycobacterium colombiense CECT 3035] Length=440 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 364/414 (88%), Positives = 385/414 (93%), Gaps = 2/414 (0%) Query 1 VNDNQLA-PVAR-PRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEAS 58 +NDN A P A+ PRSPLE+LDTVP+S+LRRLKQYSGRLATEAVS M +RLPFFA+LEAS Sbjct 1 MNDNPFAGPFAKQPRSPLEMLDTVPESVLRRLKQYSGRLATEAVSVMGDRLPFFAELEAS 60 Query 59 QRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEF 118 QRAS+ALVVQTA+ NF EWM DPHSDV +TAQAFELVPQDL RRIALR +VDM RVTM+F Sbjct 61 QRASMALVVQTAINNFAEWMQDPHSDVSHTAQAFELVPQDLARRIALRHSVDMARVTMDF 120 Query 119 FEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVV 178 FEEVVPLLARSE+QLTALTVGILKYSRDLAFTAATAYA+AAEARGTWDSRMEASVVDAVV Sbjct 121 FEEVVPLLARSEDQLTALTVGILKYSRDLAFTAATAYANAAEARGTWDSRMEASVVDAVV 180 Query 179 RGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA 238 RGDTGPELLSRAAALNWDTTAPATV+VGTPAPG +GS DSERASQ VRD AA+HGRA Sbjct 181 RGDTGPELLSRAAALNWDTTAPATVVVGTPAPGRDGSTGPDDSERASQHVRDIAAQHGRA 240 Query 239 ALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGM 298 ALTDVHGTWLVAIVSGQLSPT+KFL DLL AFAD PVV+GPTAPMLTAA+ SASEAISGM Sbjct 241 ALTDVHGTWLVAIVSGQLSPTDKFLGDLLVAFADGPVVVGPTAPMLTAAYHSASEAISGM 300 Query 299 NAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCG 358 NAV GWRGAPRPV ARELLPERALMGDASAIVALHTDVM PLADAGPTLIETLDAYLDCG Sbjct 301 NAVGGWRGAPRPVPARELLPERALMGDASAIVALHTDVMGPLADAGPTLIETLDAYLDCG 360 Query 359 GAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPT 412 GAIEACARKLFVHPNTVRYRL+RITDFTGRDP QPRDAYVLRVAATVGQLNYPT Sbjct 361 GAIEACARKLFVHPNTVRYRLRRITDFTGRDPMQPRDAYVLRVAATVGQLNYPT 414 >gi|289758366|ref|ZP_06517744.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289713930|gb|EFD77942.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] Length=330 Score = 653 bits (1684), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/330 (99%), Positives = 330/330 (100%), Gaps = 0/330 (0%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 +NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR Sbjct 1 MNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE Sbjct 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG Sbjct 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 Query 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL Sbjct 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 Query 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA Sbjct 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 Query 301 VAGWRGAPRPVLARELLPERALMGDASAIV 330 VAGWRGAPRPVLARELLPERALMGDASAIV Sbjct 301 VAGWRGAPRPVLARELLPERALMGDASAIV 330 >gi|333990293|ref|YP_004522907.1| hypothetical protein JDM601_1653 [Mycobacterium sp. JDM601] gi|333486261|gb|AEF35653.1| conserved hypothetical protein [Mycobacterium sp. JDM601] Length=438 Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/412 (85%), Positives = 370/412 (90%), Gaps = 5/412 (1%) Query 3 DNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRAS 62 DN PV PRS L+LL VPD+LLRRLK YSGRLATEAVSAM +RLPFFA+LEASQRAS Sbjct 3 DNSAGPVL-PRSTLDLLSAVPDTLLRRLKHYSGRLATEAVSAMGDRLPFFAELEASQRAS 61 Query 63 VALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEV 122 VALVVQ AVVNF EWMHDPH +VG+TAQAFELVPQDLTR IALR TVDMVRVTMEFFEEV Sbjct 62 VALVVQAAVVNFAEWMHDPHGNVGHTAQAFELVPQDLTRHIALRHTVDMVRVTMEFFEEV 121 Query 123 VPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDT 182 VP+LARSEEQ+TALTVGILKYSRDLAFTAA+AYADAAEARGTWDSRMEASVVDAVVRGDT Sbjct 122 VPMLARSEEQVTALTVGILKYSRDLAFTAASAYADAAEARGTWDSRMEASVVDAVVRGDT 181 Query 183 GPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTD 242 GPELLSRAAALNWDT APATV+VGT PGP+ + ++ASQDVRD A RHGRAALTD Sbjct 182 GPELLSRAAALNWDTNAPATVVVGTAPPGPDAFS----GQKASQDVRDVAERHGRAALTD 237 Query 243 VHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVA 302 VHGTWLVAIVSG LSPT+KFL DLLAAF+D PVVIGPTAP LTAA+ SASEAISGMNAV Sbjct 238 VHGTWLVAIVSGPLSPTQKFLADLLAAFSDGPVVIGPTAPSLTAAYHSASEAISGMNAVI 297 Query 303 GWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIE 362 GW GAPRPVLARELLPERAL+GDASAI ALHTDVMRPLA+AGP+L ETLDAYLDCGGAIE Sbjct 298 GWTGAPRPVLARELLPERALIGDASAIAALHTDVMRPLAEAGPSLTETLDAYLDCGGAIE 357 Query 363 ACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 AC+RKLFVHPNTVRYRLKRI DFTGRDPTQPRDAYVLRVAATVG+L H Sbjct 358 ACSRKLFVHPNTVRYRLKRIADFTGRDPTQPRDAYVLRVAATVGRLANQAQH 409 >gi|289762406|ref|ZP_06521784.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] gi|289709912|gb|EFD73928.1| conserved hypothetical protein [Mycobacterium tuberculosis GM 1503] Length=360 Score = 639 bits (1648), Expect = 0.0, Method: Compositional matrix adjust. Identities = 322/324 (99%), Positives = 323/324 (99%), Gaps = 0/324 (0%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 +NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR Sbjct 1 MNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE Sbjct 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG Sbjct 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 Query 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL Sbjct 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 Query 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA Sbjct 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 Query 301 VAGWRGAPRPVLARELLPERALMG 324 VAGWRGAPRPVLARELLPERALM Sbjct 301 VAGWRGAPRPVLARELLPERALMA 324 >gi|289750840|ref|ZP_06510218.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] gi|289691427|gb|EFD58856.1| conserved hypothetical protein [Mycobacterium tuberculosis T92] Length=306 Score = 612 bits (1579), Expect = 3e-173, Method: Compositional matrix adjust. Identities = 305/306 (99%), Positives = 306/306 (100%), Gaps = 0/306 (0%) Query 109 VDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSR 168 +DMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSR Sbjct 1 MDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSR 60 Query 169 MEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDV 228 MEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDV Sbjct 61 MEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDV 120 Query 229 RDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAH 288 RDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAH Sbjct 121 RDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAH 180 Query 289 RSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLI 348 RSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLI Sbjct 181 RSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLI 240 Query 349 ETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 ETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL Sbjct 241 ETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 300 Query 409 NYPTPH 414 NYPTPH Sbjct 301 NYPTPH 306 >gi|108800329|ref|YP_640526.1| hypothetical protein Mmcs_3363 [Mycobacterium sp. MCS] gi|126435952|ref|YP_001071643.1| hypothetical protein Mjls_3374 [Mycobacterium sp. JLS] gi|108770748|gb|ABG09470.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|126235752|gb|ABN99152.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=428 Score = 597 bits (1538), Expect = 2e-168, Method: Compositional matrix adjust. Identities = 313/407 (77%), Positives = 351/407 (87%), Gaps = 11/407 (2%) Query 3 DNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRAS 62 DN+ P P S +E+L TVPDS+LRRLKQYSGRLATEAV++MQ+RLPFFA LEASQRAS Sbjct 3 DNRYVP---PASTVEVLQTVPDSVLRRLKQYSGRLATEAVASMQDRLPFFAGLEASQRAS 59 Query 63 VALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEV 122 V LVVQTAVVNFVEWM +P S+V YTAQAFE+VPQDLTRRIALRQTV+MVR TMEFFEE Sbjct 60 VHLVVQTAVVNFVEWMRNPQSNVSYTAQAFEVVPQDLTRRIALRQTVEMVRTTMEFFEEA 119 Query 123 VPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDT 182 VPLLARS+EQ+TALT GIL+YSRDLAF AA+AYADAAEARG WD+RMEA+VVDAVVRGD Sbjct 120 VPLLARSDEQVTALTAGILRYSRDLAFAAASAYADAAEARGAWDTRMEANVVDAVVRGDV 179 Query 183 GPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTD 242 GPEL S+AA LNWD TAPATV+VG P P + A+ DVRD R+ RAAL+D Sbjct 180 GPELQSQAATLNWDATAPATVIVGLPHP--------DRIDLAADDVRDIVTRNDRAALSD 231 Query 243 VHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVA 302 VHGTWLVAIVSG +SPT++FLK++L AFAD PVV+GPTAP L+AAH SA+EAI+GMNAVA Sbjct 232 VHGTWLVAIVSGPISPTDRFLKEILVAFADGPVVVGPTAPTLSAAHLSATEAIAGMNAVA 291 Query 303 GWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIE 362 GW GAPRPV ARELLPERAL+GDA+AI AL T+VMRPL DAGP L ETLDAYLD GGAIE Sbjct 292 GWSGAPRPVSARELLPERALLGDATAIAALETEVMRPLGDAGPALTETLDAYLDAGGAIE 351 Query 363 ACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 ACAR+LFVHPNTVRYRLKRI DFTGRDPT PRDAYVLRVA+TVG+LN Sbjct 352 ACARQLFVHPNTVRYRLKRIADFTGRDPTLPRDAYVLRVASTVGRLN 398 >gi|119869457|ref|YP_939409.1| hypothetical protein Mkms_3425 [Mycobacterium sp. KMS] gi|119695546|gb|ABL92619.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length=428 Score = 595 bits (1533), Expect = 7e-168, Method: Compositional matrix adjust. Identities = 312/407 (77%), Positives = 350/407 (86%), Gaps = 11/407 (2%) Query 3 DNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRAS 62 DN+ P P S +E+L TVPDS+LRRLKQYSGRLA EAV++MQ+RLPFFA LEASQRAS Sbjct 3 DNRYVP---PASTVEVLQTVPDSVLRRLKQYSGRLAIEAVASMQDRLPFFAGLEASQRAS 59 Query 63 VALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEV 122 V LVVQTAVVNFVEWM +P S+V YTAQAFE+VPQDLTRRIALRQTV+MVR TMEFFEE Sbjct 60 VHLVVQTAVVNFVEWMRNPQSNVSYTAQAFEVVPQDLTRRIALRQTVEMVRTTMEFFEEA 119 Query 123 VPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDT 182 VPLLARS+EQ+TALT GIL+YSRDLAF AA+AYADAAEARG WD+RMEA+VVDAVVRGD Sbjct 120 VPLLARSDEQVTALTAGILRYSRDLAFAAASAYADAAEARGAWDTRMEANVVDAVVRGDV 179 Query 183 GPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTD 242 GPEL S+AA LNWD TAPATV+VG P P + A+ DVRD R+ RAAL+D Sbjct 180 GPELQSQAATLNWDATAPATVIVGLPHP--------DRIDLAADDVRDIVTRNDRAALSD 231 Query 243 VHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVA 302 VHGTWLVAIVSG +SPT++FLK++L AFAD PVV+GPTAP L+AAH SA+EAI+GMNAVA Sbjct 232 VHGTWLVAIVSGPISPTDRFLKEILVAFADGPVVVGPTAPTLSAAHLSATEAIAGMNAVA 291 Query 303 GWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIE 362 GW GAPRPV ARELLPERAL+GDA+AI AL T+VMRPL DAGP L ETLDAYLD GGAIE Sbjct 292 GWSGAPRPVSARELLPERALLGDATAIAALETEVMRPLGDAGPALTETLDAYLDAGGAIE 351 Query 363 ACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 ACAR+LFVHPNTVRYRLKRI DFTGRDPT PRDAYVLRVA+TVG+LN Sbjct 352 ACARQLFVHPNTVRYRLKRIADFTGRDPTLPRDAYVLRVASTVGRLN 398 >gi|120404712|ref|YP_954541.1| hypothetical protein Mvan_3753 [Mycobacterium vanbaalenii PYR-1] gi|119957530|gb|ABM14535.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=428 Score = 588 bits (1515), Expect = 7e-166, Method: Compositional matrix adjust. Identities = 306/408 (75%), Positives = 347/408 (86%), Gaps = 11/408 (2%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 + DN+ P PRS +E+L+ VP+S LRRLKQYSGRLAT+AV AM+ERLPFFA+L+ASQR Sbjct 1 MTDNRFIP---PRSTVEVLENVPESTLRRLKQYSGRLATQAVHAMEERLPFFAELDASQR 57 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASV LVVQTAVVNF EWM DP S+V YTAQAFE+VPQDL RRIALRQ+V+MVRVTMEFFE Sbjct 58 ASVQLVVQTAVVNFAEWMRDPRSNVSYTAQAFEVVPQDLRRRIALRQSVEMVRVTMEFFE 117 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRG 180 EVVPLLARSE+QL A+T GIL+YSRDLAF AATAYAD AEARG WD+RMEA++VDAVVRG Sbjct 118 EVVPLLARSEDQLAAMTAGILRYSRDLAFAAATAYADQAEARGAWDTRMEANLVDAVVRG 177 Query 181 DTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAAL 240 T PEL S+AAALNWD TAPATV+VG P P +E A DV + A R+GR AL Sbjct 178 GTRPELQSQAAALNWDATAPATVIVGMPRP--------DRAEFAGDDVHEVADRNGRTAL 229 Query 241 TDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 +DVHGTWLVAI+SG LSPT++FL +L+ FAD PVVIGPTAP L AAHRSA+EAI+GMNA Sbjct 230 SDVHGTWLVAIISGGLSPTDRFLSELMTVFADGPVVIGPTAPTLGAAHRSATEAIAGMNA 289 Query 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 VAGW GAPRPV ARELLPERAL+GDA+A AL +VMRPL+DAGP L+ETLDAYLD GGA Sbjct 290 VAGWAGAPRPVSARELLPERALLGDATAGAALEAEVMRPLSDAGPALMETLDAYLDSGGA 349 Query 361 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 IEACARKLFVHPNTVRYRLKRI DFTGRDPT PRDAYVLRVA++VG+L Sbjct 350 IEACARKLFVHPNTVRYRLKRIADFTGRDPTVPRDAYVLRVASSVGRL 397 >gi|118468199|ref|YP_888599.1| hypothetical protein MSMEG_4324 [Mycobacterium smegmatis str. MC2 155] gi|118169486|gb|ABK70382.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length=428 Score = 587 bits (1513), Expect = 1e-165, Method: Compositional matrix adjust. Identities = 307/407 (76%), Positives = 345/407 (85%), Gaps = 11/407 (2%) Query 3 DNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRAS 62 DN+ P P+S +E+L+ VPDSLLRRLKQYSGRLATEAV AM++RLPFFA+L+ASQRAS Sbjct 3 DNRFVP---PKSTVEVLEAVPDSLLRRLKQYSGRLATEAVHAMEQRLPFFAELDASQRAS 59 Query 63 VALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEV 122 V LVVQTAVVNFVEWM +P S+VGYTAQAFE+VPQDL RR+ALRQ+V+MVR +MEFFEE Sbjct 60 VQLVVQTAVVNFVEWMRNPESNVGYTAQAFEVVPQDLRRRVALRQSVEMVRTSMEFFEEA 119 Query 123 VPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDT 182 VPLLARSEEQLTALT GIL+YSRDLAF AA+AYAD AEARG WD RMEA++VDAVVRGDT Sbjct 120 VPLLARSEEQLTALTAGILRYSRDLAFAAASAYADQAEARGAWDIRMEANIVDAVVRGDT 179 Query 183 GPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTD 242 GPEL S+AAALNWD TAPATV+VG P +D E A DV R+ RAAL+D Sbjct 180 GPELQSQAAALNWDATAPATVIVGLP-------RAD-RIEMARDDVHAVVRRNDRAALSD 231 Query 243 VHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVA 302 VHGTWLV IVSG LS T++FL DL++ FAD PVVIGPT P LTAAHRSA+EAISGMNAVA Sbjct 232 VHGTWLVTIVSGPLSATDRFLADLMSVFADGPVVIGPTTPTLTAAHRSATEAISGMNAVA 291 Query 303 GWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIE 362 GW APRPV ARELLPERAL+GDA A+ AL T+VMRPLADAGP L ETLDA+LD GGAIE Sbjct 292 GWPSAPRPVSARELLPERALLGDADAVTALETEVMRPLADAGPALTETLDAFLDSGGAIE 351 Query 363 ACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 ACARKLFVHPNTVRYRL+RI DFTGRDP PRDAYVLRVA+TVG+L+ Sbjct 352 ACARKLFVHPNTVRYRLRRIADFTGRDPAVPRDAYVLRVASTVGRLS 398 >gi|315443826|ref|YP_004076705.1| regulator of polyketide synthase expression [Mycobacterium sp. Spyr1] gi|315262129|gb|ADT98870.1| regulator of polyketide synthase expression [Mycobacterium sp. Spyr1] Length=428 Score = 585 bits (1508), Expect = 5e-165, Method: Compositional matrix adjust. Identities = 304/407 (75%), Positives = 346/407 (86%), Gaps = 11/407 (2%) Query 2 NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRA 61 ++N+ P P S +E+L VPDS LRRLKQYSGRLATEAV AM+ERLPFFAD+EASQRA Sbjct 3 DNNRFVP---PNSTVEVLGNVPDSTLRRLKQYSGRLATEAVHAMEERLPFFADMEASQRA 59 Query 62 SVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEE 121 SV LVVQTAVVNFVEWM DP SDV YTAQAFE+VPQDL RRIALRQ+V+MVR TME+FEE Sbjct 60 SVQLVVQTAVVNFVEWMRDPQSDVSYTAQAFEVVPQDLRRRIALRQSVEMVRTTMEYFEE 119 Query 122 VVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGD 181 VVPLLARSEEQLTALT GIL+YSRDLAF AA+AYAD AEARG WD+R+E+++VDAVVRGD Sbjct 120 VVPLLARSEEQLTALTAGILRYSRDLAFAAASAYADQAEARGAWDTRIESNLVDAVVRGD 179 Query 182 TGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALT 241 GP+L S+AAALNWD TAPATV+VGTP P +E DV D RHGRAAL+ Sbjct 180 IGPDLQSQAAALNWDATAPATVIVGTPRP--------DRTEFVVDDVHDVVKRHGRAALS 231 Query 242 DVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAV 301 DVHGTWLVAIVSG LSPT++FL +L++ FAD PVVIGPTA L AHRSA+EA++GMN+V Sbjct 232 DVHGTWLVAIVSGNLSPTDRFLAELMSVFADGPVVIGPTAATLGGAHRSATEAVAGMNSV 291 Query 302 AGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAI 361 AGW GAPRPV ARELLPERAL+GD +A AL +VMRPLADAGP L++TLDAYLD GGAI Sbjct 292 AGWPGAPRPVAARELLPERALLGDVTAATALEAEVMRPLADAGPALMDTLDAYLDSGGAI 351 Query 362 EACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 EACARKLF+HPNTVRYRLKRITDFTGRDPT PRDAYVLRVA+++G+L Sbjct 352 EACARKLFIHPNTVRYRLKRITDFTGRDPTVPRDAYVLRVASSLGRL 398 >gi|145223367|ref|YP_001134045.1| hypothetical protein Mflv_2780 [Mycobacterium gilvum PYR-GCK] gi|145215853|gb|ABP45257.1| conserved hypothetical protein [Mycobacterium gilvum PYR-GCK] Length=428 Score = 583 bits (1503), Expect = 2e-164, Method: Compositional matrix adjust. Identities = 303/407 (75%), Positives = 346/407 (86%), Gaps = 11/407 (2%) Query 2 NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRA 61 ++N+ P P S +E+L VPDS LRRLKQYSGRLATEAV AM+ERLPFFAD+EASQRA Sbjct 3 DNNRFVP---PNSTVEVLGNVPDSTLRRLKQYSGRLATEAVHAMEERLPFFADMEASQRA 59 Query 62 SVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEE 121 SV LVVQTAVVNFVEWM DP SDV YTAQAFE+VPQDL RRIALRQ+V+MVR TME+FEE Sbjct 60 SVQLVVQTAVVNFVEWMRDPQSDVSYTAQAFEVVPQDLRRRIALRQSVEMVRTTMEYFEE 119 Query 122 VVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGD 181 VVPLLARSE+QLTALT GIL+YSRDLAF AA+AYAD AEARG WD+R+E+++VDAVVRGD Sbjct 120 VVPLLARSEDQLTALTAGILRYSRDLAFAAASAYADQAEARGAWDTRIESNLVDAVVRGD 179 Query 182 TGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALT 241 GP+L S+AAALNWD TAPATV+VGTP P +E DV D RHGRAAL+ Sbjct 180 IGPDLQSQAAALNWDATAPATVIVGTPRP--------DRTEFVVDDVHDVVKRHGRAALS 231 Query 242 DVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAV 301 DVHGTWLVAIVSG LSPT++FL +L++ FAD PVVIGPTA L AHRSA+EA++GMN+V Sbjct 232 DVHGTWLVAIVSGNLSPTDRFLAELMSVFADGPVVIGPTAATLGGAHRSATEAVAGMNSV 291 Query 302 AGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAI 361 AGW GAPRPV ARELLPERAL+GD +A AL +VMRPLADAGP L++TLDAYLD GGAI Sbjct 292 AGWPGAPRPVAARELLPERALLGDVTAATALEAEVMRPLADAGPALMDTLDAYLDSGGAI 351 Query 362 EACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 EACARKLF+HPNTVRYRLKRITDFTGRDPT PRDAYVLRVA+++G+L Sbjct 352 EACARKLFIHPNTVRYRLKRITDFTGRDPTVPRDAYVLRVASSLGRL 398 >gi|169628968|ref|YP_001702617.1| hypothetical protein MAB_1880c [Mycobacterium abscessus ATCC 19977] gi|169240935|emb|CAM61963.1| Conserved hypothetical protein [Mycobacterium abscessus] Length=426 Score = 543 bits (1398), Expect = 3e-152, Method: Compositional matrix adjust. Identities = 281/396 (71%), Positives = 327/396 (83%), Gaps = 9/396 (2%) Query 13 RSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVV 72 R P E + VP++LL R+KQYSGRL+TEAV M++RLPFF DLEASQRASVALVVQTA+ Sbjct 16 RKPRERAE-VPEALLHRIKQYSGRLSTEAVHVMEDRLPFFTDLEASQRASVALVVQTAIN 74 Query 73 NFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQ 132 NFVEW+ DP VG+T QAFE+VPQDL +RIALR +VDMVR MEFFEEV+PLLAR++EQ Sbjct 75 NFVEWIRDPEGTVGFTMQAFEVVPQDLAKRIALRHSVDMVRTAMEFFEEVLPLLARNDEQ 134 Query 133 LTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAA 192 L LT GIL+YSRDLAF AA+AYA+AAE RG WDSR+EA+VVDAVVRGDTGP++LSRAAA Sbjct 135 LVTLTEGILRYSRDLAFGAASAYAEAAETRGAWDSRLEATVVDAVVRGDTGPDMLSRAAA 194 Query 193 LNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIV 252 LNWDT APATV+VGTP P + A+ V + A RHGR AL + GT L+ IV Sbjct 195 LNWDTNAPATVIVGTPRPDIIAT--------ATTLVHEVAQRHGRGALAVIQGTRLLTIV 246 Query 253 SGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVL 312 SG ++ +KFL DL+ F+D PVV+GPTA L+A+H SA EA+SGM+AV+GWRGAPRPV Sbjct 247 SGPITAHDKFLADLMKVFSDGPVVVGPTAGSLSASHTSAVEALSGMDAVSGWRGAPRPVS 306 Query 313 ARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHP 372 +RELLPERAL+GD +AI AL+T+VMRPLADAGP L ETLDAYLD GGAIEACAR LFVHP Sbjct 307 SRELLPERALLGDKAAIAALNTEVMRPLADAGPALTETLDAYLDSGGAIEACARALFVHP 366 Query 373 NTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 NTVRYRLKRITDFTGRDPT PRDAYVLRVAATVG+L Sbjct 367 NTVRYRLKRITDFTGRDPTSPRDAYVLRVAATVGRL 402 >gi|262203011|ref|YP_003274219.1| Regulator of polyketide synthase expression- like protein [Gordonia bronchialis DSM 43247] gi|262086358|gb|ACY22326.1| Regulator of polyketide synthase expression- like protein [Gordonia bronchialis DSM 43247] Length=418 Score = 493 bits (1269), Expect = 3e-137, Method: Compositional matrix adjust. Identities = 254/397 (64%), Positives = 310/397 (79%), Gaps = 8/397 (2%) Query 14 SPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVN 73 +P + D +PD+LLRR+KQYSGRLATEAV +MQ++LP+F DL+A+QRASV LVVQTAVVN Sbjct 20 APATVHDALPDTLLRRVKQYSGRLATEAVHSMQDQLPYFGDLDAAQRASVQLVVQTAVVN 79 Query 74 FVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQL 133 FVEW+ DP +V +T QAF++VPQDL RRI L QTV+MVRV MEFFE+ +PLLAR++ QL Sbjct 80 FVEWIQDPEGNVKFTVQAFQVVPQDLARRITLLQTVEMVRVAMEFFEKWLPLLARNDAQL 139 Query 134 TALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAAL 193 ALT +L+Y R++ F AA+ YA AAE+RG WDSR+EA VVDAVVRGDTGP+LLSRAAAL Sbjct 140 RALTESVLRYGREIGFAAASIYASAAESRGAWDSRLEALVVDAVVRGDTGPQLLSRAAAL 199 Query 194 NWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVS 253 NWD+ APATVLVG P P N S + +TA H R+AL+ V G +LVAIVS Sbjct 200 NWDSDAPATVLVGAPPPEQNVS--------VPLAIHNTARAHDRSALSVVQGKFLVAIVS 251 Query 254 GQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLA 313 G L PTEKF LL FAD PVVIGPT P L +AH SA+EA++G+ AV GW APRPV + Sbjct 252 GALKPTEKFTSALLEHFADGPVVIGPTMPNLGSAHASATEAMAGIEAVVGWPNAPRPVHS 311 Query 314 RELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPN 373 ELLPERAL GD SA+ AL ++RPLA G TL TL+AYLD GG++E+CAR L++HPN Sbjct 312 LELLPERALNGDESAMAALSESLVRPLAKGGATLNTTLEAYLDSGGSVESCARVLYIHPN 371 Query 374 TVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY 410 TVRYRLK+I++ TGRDPT PRDAYVLR+AATVG+L + Sbjct 372 TVRYRLKKISEITGRDPTNPRDAYVLRIAATVGRLTH 408 >gi|54023582|ref|YP_117824.1| hypothetical protein nfa16140 [Nocardia farcinica IFM 10152] gi|54015090|dbj|BAD56460.1| hypothetical protein [Nocardia farcinica IFM 10152] Length=423 Score = 488 bits (1255), Expect = 1e-135, Method: Compositional matrix adjust. Identities = 258/393 (66%), Positives = 307/393 (79%), Gaps = 11/393 (2%) Query 20 DTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMH 79 D +PD+LL+R+KQ+SGRL+TEAV +MQ+RLPFFADL+A+QRA V ++VQTAVVNF+EW+ Sbjct 16 DPLPDTLLKRVKQFSGRLSTEAVGSMQDRLPFFADLDAAQRAGVQMLVQTAVVNFLEWLQ 75 Query 80 DPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVG 139 DP SD+ ++ AF+++PQDL RR+ LRQTVDMVRV MEFFE+ +P LAR++ QL ALT Sbjct 76 DPDSDIRFSLDAFQVIPQDLARRLTLRQTVDMVRVAMEFFEQWLPALARNDRQLVALTEA 135 Query 140 ILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTA 199 +L+Y R+L F AA+ YA AAE+RG WD+R+EA VVDAVVRGDTGP++LSRAA LNWD TA Sbjct 136 VLRYGRELGFAAASVYASAAESRGAWDTRLEALVVDAVVRGDTGPDMLSRAATLNWDATA 195 Query 200 PATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQL--S 257 PATVLVGTP PG G +S G V AARHGRAAL V G LV +VSG L S Sbjct 196 PATVLVGTP-PGEQGVSSVG-------AVHTIAARHGRAALAVVQGARLVMVVSGHLGDS 247 Query 258 PTEKFLKDLLA-AFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLAREL 316 FL DLLA F+D PVVIGPT L AAH SA EA++GM AV GWRGAPRPV A EL Sbjct 248 YASPFLADLLAEVFSDGPVVIGPTVRTLGAAHASAVEALAGMEAVVGWRGAPRPVHAAEL 307 Query 317 LPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVR 376 LPERAL+GD AI AL+ V+ PLA AG L +TLDAYLDCGGA+E CAR+L+VHPNTVR Sbjct 308 LPERALLGDRGAIDALNEYVVLPLAAAGSALADTLDAYLDCGGAVETCARQLYVHPNTVR 367 Query 377 YRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 YRLKRI + TGRDP PRDAYVLR+AATVG+L Sbjct 368 YRLKRIAEITGRDPMNPRDAYVLRIAATVGRLT 400 >gi|226360335|ref|YP_002778113.1| CdaR family transcriptional regulator [Rhodococcus opacus B4] gi|226238820|dbj|BAH49168.1| putative CdaR family transcriptional regulator [Rhodococcus opacus B4] Length=423 Score = 480 bits (1236), Expect = 2e-133, Method: Compositional matrix adjust. Identities = 249/396 (63%), Positives = 308/396 (78%), Gaps = 15/396 (3%) Query 20 DTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMH 79 D +PD+LLRR+KQ+SGRL+TEAV+ MQ++LPFF DL+A+QR++V L+VQTAVVNF+EW+ Sbjct 16 DPLPDALLRRVKQFSGRLSTEAVTTMQDQLPFFDDLDAAQRSNVQLLVQTAVVNFLEWLK 75 Query 80 DPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVG 139 +P SD+ ++ AF+++PQDL RR+ L QTVDMVRV MEFFE+ +P LAR+++QL ALT Sbjct 76 NPDSDIRFSLDAFQVIPQDLARRLTLSQTVDMVRVAMEFFEQWLPALARNDQQLIALTEA 135 Query 140 ILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTA 199 +L+Y R+L F AA+ YA AAE+RG WD+R+EA VVDAVVRGDTG ++LSRAA LNWD TA Sbjct 136 VLRYGRELGFAAASVYASAAESRGAWDTRLEALVVDAVVRGDTGSDMLSRAATLNWDATA 195 Query 200 PATVLVGTPAPGPNGSNSDGDSERAS--QDVRDTAARHGRAALTDVHGTWLVAIVSGQL- 256 PATV+VGTP + ER S V A RHGRAAL V G+ LV +VSG+L Sbjct 196 PATVIVGTPP----------EDERVSVVGTVHTIAQRHGRAALAVVQGSRLVMVVSGELQ 245 Query 257 --SPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLAR 314 S F+ DLL F+D PV+IGPT P L AAH SA EA++ M AVAGWRGAPRPV A Sbjct 246 EGSGHSSFMTDLLGKFSDEPVIIGPTTPTLGAAHFSAVEALAAMQAVAGWRGAPRPVHAA 305 Query 315 ELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNT 374 ELLPERAL+GD +A+ AL+ ++ PLA AG L +TLDAYLDCGGA+E CAR+LFVHPNT Sbjct 306 ELLPERALLGDNAAVTALNDHLVAPLAAAGGVLTDTLDAYLDCGGAVETCARQLFVHPNT 365 Query 375 VRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY 410 VRYRLKRI + TGRDPT PRDAYVLRVAATVG+L + Sbjct 366 VRYRLKRIAEVTGRDPTNPRDAYVLRVAATVGRLTH 401 >gi|254551287|ref|ZP_05141734.1| hypothetical protein Mtube_12630 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=241 Score = 480 bits (1235), Expect = 2e-133, Method: Compositional matrix adjust. Identities = 238/241 (99%), Positives = 239/241 (99%), Gaps = 0/241 (0%) Query 174 VDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAA 233 +DAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAA Sbjct 1 MDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAA 60 Query 234 RHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASE 293 RHGRAALTDVHGTWLVAIVSGQLSPTE FLKDLLAAFADA VVIGPTAPMLTAAHRSASE Sbjct 61 RHGRAALTDVHGTWLVAIVSGQLSPTENFLKDLLAAFADATVVIGPTAPMLTAAHRSASE 120 Query 294 AISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDA 353 AISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDA Sbjct 121 AISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDA 180 Query 354 YLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 413 YLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP Sbjct 181 YLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTP 240 Query 414 H 414 H Sbjct 241 H 241 >gi|111018210|ref|YP_701182.1| hypothetical protein RHA1_ro01198 [Rhodococcus jostii RHA1] gi|110817740|gb|ABG93024.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=423 Score = 479 bits (1233), Expect = 3e-133, Method: Compositional matrix adjust. Identities = 248/396 (63%), Positives = 308/396 (78%), Gaps = 15/396 (3%) Query 20 DTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMH 79 D +PD+LLRR+KQ+SGRL+TEAV+ MQ++LPFF DL+A+QR++V L+VQTAVVNF+EW+ Sbjct 16 DPLPDALLRRVKQFSGRLSTEAVTTMQDQLPFFDDLDAAQRSNVQLLVQTAVVNFLEWLK 75 Query 80 DPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVG 139 +P SD+ ++ AF+++PQDL RR+ L QTVDMVRV MEFFE+ +P LAR+++QL ALT Sbjct 76 NPDSDIRFSLDAFQVIPQDLARRLTLSQTVDMVRVAMEFFEQWLPALARNDQQLIALTEA 135 Query 140 ILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTA 199 +L+Y R+L F AA+ YA AAE+RG WD+R+EA VVDAVVRGDTG ++LSRAA LNWD TA Sbjct 136 VLRYGRELGFAAASVYASAAESRGAWDTRLEALVVDAVVRGDTGSDMLSRAATLNWDATA 195 Query 200 PATVLVGTPAPGPNGSNSDGDSERAS--QDVRDTAARHGRAALTDVHGTWLVAIVSGQL- 256 PATV+VGTP + ER S V A +HGRAAL V G+ LV +VSG+L Sbjct 196 PATVIVGTPP----------EDERVSVVGTVHTIAQKHGRAALAVVQGSRLVMVVSGELQ 245 Query 257 --SPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLAR 314 S F+ DLL F+D PV+IGPT P L AAH SA EA++ M AVAGWRGAPRPV A Sbjct 246 EGSGHSSFMTDLLGKFSDEPVIIGPTTPTLGAAHFSAVEALAAMQAVAGWRGAPRPVHAA 305 Query 315 ELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNT 374 ELLPERAL+GD +A+ AL+ ++ PLA AG L +TLDAYLDCGGA+E CAR+LFVHPNT Sbjct 306 ELLPERALLGDNAAVTALNDHLVAPLAAAGGVLTDTLDAYLDCGGAVETCARQLFVHPNT 365 Query 375 VRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY 410 VRYRLKRI + TGRDPT PRDAYVLRVAATVG+L + Sbjct 366 VRYRLKRIAEVTGRDPTNPRDAYVLRVAATVGRLTH 401 >gi|312140256|ref|YP_004007592.1| hypothetical protein REQ_28940 [Rhodococcus equi 103S] gi|325676997|ref|ZP_08156668.1| regulator of polyketide synthase expression family protein [Rhodococcus equi ATCC 33707] gi|311889595|emb|CBH48912.1| conserved hypothetical protein [Rhodococcus equi 103S] gi|325552159|gb|EGD21850.1| regulator of polyketide synthase expression family protein [Rhodococcus equi ATCC 33707] Length=449 Score = 478 bits (1231), Expect = 6e-133, Method: Compositional matrix adjust. Identities = 245/392 (63%), Positives = 307/392 (79%), Gaps = 11/392 (2%) Query 20 DTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMH 79 D++PD+LLRR+KQ+SGRL+TEA++++Q++LPFFADL+A QRASV ++VQ +VVNF+EW+ Sbjct 42 DSLPDALLRRVKQFSGRLSTEAIASLQDQLPFFADLDAEQRASVQMIVQKSVVNFLEWLT 101 Query 80 DPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVG 139 D SD+ +T A++++PQDL RR+ LRQTVDMVRV MEFFE+ +P LAR++ QL ALT Sbjct 102 DSDSDIRFTIDAYQVIPQDLARRLTLRQTVDMVRVAMEFFEQRLPALARNDRQLVALTEA 161 Query 140 ILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTA 199 IL+Y R+L F AA+ YA AAE+RG WD+R+EA VVDAVVRGDTG +L SRAA LNWD TA Sbjct 162 ILRYGRELGFAAASVYASAAESRGAWDTRLEALVVDAVVRGDTGSDLQSRAATLNWDATA 221 Query 200 PATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPT 259 PATV+VGTP P G + G V TA RHGR AL + G LV +VSG+L + Sbjct 222 PATVIVGTPPP-EEGVSVIG-------TVHSTAQRHGRGALAVIQGDRLVLVVSGELHGS 273 Query 260 E---KFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLAREL 316 + +F+ DL+ F+D PVVIGPT P L AAH SA EA++GM AV GWRGAPRPV A EL Sbjct 274 KAAREFMADLMDKFSDGPVVIGPTTPSLGAAHFSAVEALAGMEAVVGWRGAPRPVFAAEL 333 Query 317 LPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVR 376 LPERAL+GD +A+ AL +++PL +G L +TLDAYLD GGA+EACAR+LFVHPNTVR Sbjct 334 LPERALLGDTAAVAALTERLIQPLTGSGTALADTLDAYLDSGGAVEACARQLFVHPNTVR 393 Query 377 YRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 YRLKRI++ TGRDPT PRDAYVLRVAATVG+L Sbjct 394 YRLKRISEITGRDPTNPRDAYVLRVAATVGRL 425 >gi|229490302|ref|ZP_04384144.1| CdaR family transcriptional regulator [Rhodococcus erythropolis SK121] gi|229322834|gb|EEN88613.1| CdaR family transcriptional regulator [Rhodococcus erythropolis SK121] Length=442 Score = 476 bits (1224), Expect = 4e-132, Method: Compositional matrix adjust. Identities = 247/398 (63%), Positives = 309/398 (78%), Gaps = 15/398 (3%) Query 17 ELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVE 76 ++ D +P++LLRR+KQ+SGRL+TEAV+ M+E+LPFF L+ASQRA V L+VQT+VVNF+E Sbjct 32 QVRDPLPEALLRRVKQFSGRLSTEAVTVMEEQLPFFDSLDASQRADVQLLVQTSVVNFLE 91 Query 77 WMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTAL 136 W+ S++ + ++F ++PQDL R++ LRQTVDMVRV MEFFE+ +P LAR+++QL AL Sbjct 92 WLRQLDSEISFGYESFPVIPQDLARQLTLRQTVDMVRVAMEFFEKWLPALARNDQQLIAL 151 Query 137 TVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWD 196 T +L+Y R+L F AAT YA AAE+RG D+R+EA VVDAVV+GDTG ++LSRAA LNWD Sbjct 152 TEAVLRYGRELGFAAATVYASAAESRGALDTRLEALVVDAVVQGDTGSDMLSRAATLNWD 211 Query 197 TTAPATVLVGTPAPGPNGSNSDGDSERAS--QDVRDTAARHGRAALTDVHGTWLVAIVSG 254 TAPATV+VG+P P ER S V TAA HGRA L V G LV IVSG Sbjct 212 ATAPATVIVGSPPP----------DERVSVAGTVHATAAAHGRAVLAVVQGPRLVMIVSG 261 Query 255 QLSPT---EKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPV 311 +LS +FL+DLL +FAD PVVIGPT P L+AAH SASEA++G+ AVAGWRGAPRPV Sbjct 262 ELSSKTEGSQFLQDLLMSFADEPVVIGPTTPSLSAAHFSASEALAGIKAVAGWRGAPRPV 321 Query 312 LARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVH 371 A ELLPERAL+GDA+A+ AL ++ PLA++G L +TLD+YLDCGGA+E CAR LFVH Sbjct 322 FATELLPERALLGDAAAVKALRDFLVAPLAESGTVLTDTLDSYLDCGGAVETCARLLFVH 381 Query 372 PNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 PNTVRYRLKRI + TGRDPT PRDAYVLR+AATVG+L Sbjct 382 PNTVRYRLKRIAEVTGRDPTNPRDAYVLRIAATVGRLT 419 >gi|226307158|ref|YP_002767118.1| CdaR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226186275|dbj|BAH34379.1| putative CdaR family transcriptional regulator [Rhodococcus erythropolis PR4] Length=442 Score = 473 bits (1218), Expect = 2e-131, Method: Compositional matrix adjust. Identities = 246/398 (62%), Positives = 308/398 (78%), Gaps = 15/398 (3%) Query 17 ELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVE 76 ++ D +P++LLRR+KQ+SGRL+TEAV+ M+E+LPFF L+ASQRA V L+VQT+VVNF+E Sbjct 32 QVRDPLPEALLRRVKQFSGRLSTEAVTVMEEQLPFFDSLDASQRADVQLLVQTSVVNFLE 91 Query 77 WMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTAL 136 W+ S++ + ++F ++PQDL R++ LRQTVDMVRV MEFFE+ +P LAR+++QL AL Sbjct 92 WLRQLDSEISFGYESFPVIPQDLARQLTLRQTVDMVRVAMEFFEKWLPALARNDQQLIAL 151 Query 137 TVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWD 196 T +L+Y R+L F AAT YA AAE+RG D+R+EA VVDAVV+GDTG ++LSRAA LNWD Sbjct 152 TEAVLRYGRELGFAAATVYASAAESRGALDTRLEALVVDAVVQGDTGSDMLSRAATLNWD 211 Query 197 TTAPATVLVGTPAPGPNGSNSDGDSERAS--QDVRDTAARHGRAALTDVHGTWLVAIVSG 254 TAPATV+VG+P P ER S V TAA HGRA L V G LV IVSG Sbjct 212 ATAPATVIVGSPPP----------DERVSVAGTVHATAAAHGRAVLAVVQGPRLVMIVSG 261 Query 255 QLSPT---EKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPV 311 +LS +FL+DLL +FAD PVVIGPT P L+AAH SASEA++G+ AVAGWRGAPRPV Sbjct 262 ELSSKTEGSQFLQDLLMSFADEPVVIGPTTPSLSAAHFSASEALAGIKAVAGWRGAPRPV 321 Query 312 LARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVH 371 A ELLPERAL+GD +A+ AL ++ PLA++G L +TLD+YLDCGGA+E CAR LFVH Sbjct 322 FATELLPERALLGDDAAVKALRDFLVAPLAESGTVLTDTLDSYLDCGGAVETCARLLFVH 381 Query 372 PNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 PNTVRYRLKRI + TGRDPT PRDAYVLR+AATVG+L Sbjct 382 PNTVRYRLKRIAEVTGRDPTNPRDAYVLRIAATVGRLT 419 >gi|326382457|ref|ZP_08204148.1| Regulator of polyketide synthase expression- like protein [Gordonia neofelifaecis NRRL B-59395] gi|326198576|gb|EGD55759.1| Regulator of polyketide synthase expression- like protein [Gordonia neofelifaecis NRRL B-59395] Length=425 Score = 468 bits (1203), Expect = 1e-129, Method: Compositional matrix adjust. Identities = 239/395 (61%), Positives = 303/395 (77%), Gaps = 9/395 (2%) Query 14 SPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVN 73 +P + D +PD+LLRR+KQYSGRLATEA+ +M E+LP+F+DL+A+QRASV LVVQTAVVN Sbjct 28 APATVHDALPDTLLRRVKQYSGRLATEAIHSMSEQLPYFSDLDAAQRASVQLVVQTAVVN 87 Query 74 FVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQL 133 FVEW+ DP +V +T QAF++VPQDL RRI+L QTV+MVRV MEFFE+ +PLLAR++ QL Sbjct 88 FVEWIQDPEGNVKFTVQAFQVVPQDLARRISLLQTVEMVRVAMEFFEKWLPLLARNDAQL 147 Query 134 TALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAAL 193 ALT +L+Y R++ F AA YA AAE+RG WDSRMEA VVDAVVRGD GP+LLSRAAAL Sbjct 148 RALTESVLRYGREIGFAAAAIYASAAESRGAWDSRMEALVVDAVVRGDEGPQLLSRAAAL 207 Query 194 NWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVS 253 NW T A ATV+VG+P P N S + + +TA ++ RAAL+ V G+ LVAIV Sbjct 208 NWSTEAAATVIVGSPPPEQNVS--------VALTIHNTAKQYDRAALSVVQGSTLVAIVE 259 Query 254 GQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLA 313 G L P+++FL DLL FAD PVVIGPT P L +AH SA EA++G+ AVAGW APRP + Sbjct 260 GPLRPSDRFLTDLLEHFADGPVVIGPTTPNLGSAHASAVEAMAGIRAVAGWPNAPRPAYS 319 Query 314 RELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPN 373 +LLPERAL GD SAI + ++ PL + TL+ T++AYL+ GG +E CAR L++HPN Sbjct 320 WDLLPERALNGDRSAIETMDETIVEPL-NGSETLVNTVEAYLESGGQVETCARALYIHPN 378 Query 374 TVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 TVRYRLK++TD TGRD + PRDA+VLRVA T+G+L Sbjct 379 TVRYRLKKVTDITGRDASNPRDAFVLRVALTIGRL 413 >gi|333918897|ref|YP_004492478.1| hypothetical protein AS9A_1226 [Amycolicicoccus subflavus DQS3-9A1] gi|333481118|gb|AEF39678.1| hypothetical protein AS9A_1226 [Amycolicicoccus subflavus DQS3-9A1] Length=412 Score = 464 bits (1195), Expect = 9e-129, Method: Compositional matrix adjust. Identities = 239/399 (60%), Positives = 299/399 (75%), Gaps = 8/399 (2%) Query 10 ARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQT 69 RP+S + + D+LLRR+KQYSGRL+TEAV++MQE+LPFFADL+A QRA+V L+VQ+ Sbjct 3 GRPQSGRNDANPLSDALLRRVKQYSGRLSTEAVNSMQEQLPFFADLDADQRATVHLLVQS 62 Query 70 AVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARS 129 AV NFV+W+ DP D+ T +F +VP DL RR+ LRQTV+MVRV MEFFE +PL+ R+ Sbjct 63 AVSNFVDWLKDPDRDIWKTVDSFRVVPHDLARRVTLRQTVEMVRVAMEFFERWLPLMTRN 122 Query 130 EEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSR 189 E+QL ALT +L+Y ++ F AA YA AAE+RG WD+R+EA VVDAVVRGD+ +LSR Sbjct 123 EQQLAALTEAVLRYRVEIGFAAAAVYASAAESRGAWDTRLEALVVDAVVRGDSDSAMLSR 182 Query 190 AAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLV 249 AA LNWD PATV+VGTP PG S A +V + A +H R+AL+ V G+ LV Sbjct 183 AATLNWDANTPATVIVGTPPPGSGVS--------AVSNVHNAAGKHHRSALSVVQGSTLV 234 Query 250 AIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPR 309 AIV+G+L P F+ DLL AF+D VVIGPTA L AH SA EA+SG+ A GWR APR Sbjct 235 AIVNGELDPRSSFMTDLLVAFSDQHVVIGPTAKTLATAHTSAREALSGLRAAPGWRSAPR 294 Query 310 PVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLF 369 PVLA +LLPERAL+GD +A+ AL+ ++ PLA AG L ETLD YLD GGA+EACAR LF Sbjct 295 PVLAADLLPERALLGDPAAVRALNAQIVIPLAKAGNALGETLDVYLDTGGAVEACARILF 354 Query 370 VHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 VHPNTVRYRLK+IT+ TGRDP+ PRDA+VLRVA +VG+L Sbjct 355 VHPNTVRYRLKKITEITGRDPSSPRDAHVLRVAESVGRL 393 >gi|296140417|ref|YP_003647660.1| PucR family transcriptional regulator [Tsukamurella paurometabola DSM 20162] gi|296028551|gb|ADG79321.1| putative transcriptional regulator, PucR family [Tsukamurella paurometabola DSM 20162] Length=429 Score = 451 bits (1161), Expect = 7e-125, Method: Compositional matrix adjust. Identities = 241/395 (62%), Positives = 295/395 (75%), Gaps = 9/395 (2%) Query 20 DTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMH 79 D +P+++L R++QYSGR+ATEAV +M+ +LP+FADLEA+QRAS+ L+VQTAVVNF EW+ Sbjct 28 DVLPEAILSRIRQYSGRVATEAVRSMEVQLPYFADLEANQRASIQLIVQTAVVNFAEWIE 87 Query 80 DPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVG 139 +P + YT AF+ VPQDL RR++L QTV+MVRV MEFFE+ +PLLAR+E+QL ALT Sbjct 88 NP-DESEYTVAAFQSVPQDLARRVSLLQTVEMVRVAMEFFEKWLPLLARNEDQLIALTEA 146 Query 140 ILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTA 199 +L+Y R++ F AA YA AAEARG WDSRMEA VVDAVVRGDTG LLSRAAALNWD A Sbjct 147 VLRYGREIGFGAAAIYASAAEARGAWDSRMEALVVDAVVRGDTGANLLSRAAALNWDPVA 206 Query 200 PATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPT 259 ATV+VG+P P N S + V DTA HGR+AL V GT LV I SG L Sbjct 207 TATVVVGSPPPDQNVS--------VAGSVHDTARSHGRSALAVVQGTKLVVIASGALDSG 258 Query 260 EKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPE 319 F + L+ FAD PVVIG T P L AH SA EAI+G+NAVAGW GAPRPV + ELLPE Sbjct 259 HPFTEALMRHFADGPVVIGHTTPTLEDAHASAVEAIAGVNAVAGWPGAPRPVHSWELLPE 318 Query 320 RALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRL 379 RAL+GD A L+ +++PL +AG L +TLDAY+D GGA+E+CAR+LFVHPNTVRYRL Sbjct 319 RALIGDTHAGRTLYELLVQPLEEAGSALSDTLDAYIDSGGAVESCARELFVHPNTVRYRL 378 Query 380 KRITDFTGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 K+I + TGRDP PRDA+VLRVAAT+G+L P Sbjct 379 KKIAEITGRDPQDPRDAFVLRVAATIGRLAAANPE 413 >gi|343924114|ref|ZP_08763677.1| putative CdaR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] gi|343765919|dbj|GAA10603.1| putative CdaR family transcriptional regulator [Gordonia alkanivorans NBRC 16433] Length=424 Score = 451 bits (1159), Expect = 2e-124, Method: Compositional matrix adjust. Identities = 248/397 (63%), Positives = 305/397 (77%), Gaps = 8/397 (2%) Query 14 SPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVN 73 +P + D +PD+LLRR+KQYSGRLATEAV +MQ++LP+F DL+A+QRASV LVVQTAVVN Sbjct 26 APATVHDALPDTLLRRVKQYSGRLATEAVHSMQDQLPYFGDLDAAQRASVQLVVQTAVVN 85 Query 74 FVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQL 133 FVEW+ DP +V +T QAF++VPQDL RRI L QTV+MVRV MEFFE+ +PLLAR++ QL Sbjct 86 FVEWIQDPEGNVKFTVQAFQVVPQDLARRITLLQTVEMVRVAMEFFEKWLPLLARNDAQL 145 Query 134 TALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAAL 193 ALT +L+Y R++ F AA YA AAE+RG WDSR+EA VVDAVVRGDTGP+LLSRAAAL Sbjct 146 RALTESVLRYGREIGFAAAAIYASAAESRGAWDSRLEALVVDAVVRGDTGPQLLSRAAAL 205 Query 194 NWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVS 253 NWD+ APATV+VGTP P N S + +TA R+AL+ V G+ LVAIVS Sbjct 206 NWDSDAPATVIVGTPPPEQNVS--------VPLAIHNTARHFDRSALSVVQGSVLVAIVS 257 Query 254 GQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLA 313 G PTEKF+ LL+ FAD PVVIGPT P L +AH SA+EA++ + AV GW APRPV + Sbjct 258 GPARPTEKFVSALLSHFADGPVVIGPTMPNLGSAHASAAEAMAAIEAVVGWPSAPRPVHS 317 Query 314 RELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPN 373 ELLPERAL GD SA+ AL V+ PL+ G TL TL+AYLD GG++E+CAR L++HPN Sbjct 318 LELLPERALNGDESAVAALVESVVSPLSTGGTTLTTTLEAYLDSGGSVESCARVLYIHPN 377 Query 374 TVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLNY 410 TVRYRLK+I + T RDPT PRDAYVLR+A TVG+L + Sbjct 378 TVRYRLKKIAEITRRDPTNPRDAYVLRIATTVGRLTH 414 >gi|296395116|ref|YP_003660000.1| PucR family transcriptional regulator [Segniliparus rotundus DSM 44985] gi|296182263|gb|ADG99169.1| putative transcriptional regulator, PucR family [Segniliparus rotundus DSM 44985] Length=442 Score = 414 bits (1065), Expect = 1e-113, Method: Compositional matrix adjust. Identities = 222/399 (56%), Positives = 284/399 (72%), Gaps = 14/399 (3%) Query 11 RPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTA 70 R R PL P++LLRR+K +SG LAT+AV +M +LP+FA+L+ +QRA+V LVVQTA Sbjct 17 RNREPL------PENLLRRIKHFSGHLATDAVRSMDVQLPYFAELDTNQRANVQLVVQTA 70 Query 71 VVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSE 130 VVNFVEW+ +P + VG Q FE+VPQDL R I L QTVDM+RV++E FE +P LA+ E Sbjct 71 VVNFVEWLQNPSTQVGLALQPFEVVPQDLARHITLSQTVDMIRVSLEHFELYLPALAKDE 130 Query 131 EQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRA 190 QL LT +L+Y R++ F AA AYA+AAEARG+WD+R+EA +VDAV+RGD EL SRA Sbjct 131 AQLVNLTESVLRYGREIGFAAAAAYAEAAEARGSWDNRLEAVLVDAVIRGDASGELQSRA 190 Query 191 AALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVA 250 A LNWD APATV+VG + +D + + + A RH AAL+ VHG L+ Sbjct 191 ATLNWDANAPATVIVGE-------ARTDSPTS-IPVLIHNIAQRHSGAALSAVHGRKLIT 242 Query 251 IVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRP 310 +VSG L + FL +LL F D+PVVIGPTAP L A SA++A+S + AVAGWRGAPRP Sbjct 243 VVSGALPSNQAFLAELLKVFEDSPVVIGPTAPSLAEARISATDALSALEAVAGWRGAPRP 302 Query 311 VLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFV 370 A ELLPER L GD SA AL V+ PL AG +L+ TL++YLD GG ++ACAR+LFV Sbjct 303 AHADELLPERVLNGDISAARALTEQVVSPLLAAGASLLTTLESYLDTGGGVDACARELFV 362 Query 371 HPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQLN 409 HPNTVRYRL+RI TG DPT PRD +VLRVA+ +G+++ Sbjct 363 HPNTVRYRLRRIAAVTGLDPTDPRDGFVLRVASIIGRIS 401 >gi|317509072|ref|ZP_07966701.1| hypothetical protein HMPREF9336_03073 [Segniliparus rugosus ATCC BAA-974] gi|316252601|gb|EFV12042.1| hypothetical protein HMPREF9336_03073 [Segniliparus rugosus ATCC BAA-974] Length=421 Score = 410 bits (1053), Expect = 3e-112, Method: Compositional matrix adjust. Identities = 215/389 (56%), Positives = 279/389 (72%), Gaps = 10/389 (2%) Query 22 VPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDP 81 +P++LLRR+K +SG LAT+AV +M ++LP+FA+L+ +QRA+V LVVQTAVVNFVEW+ P Sbjct 1 MPETLLRRIKHFSGYLATDAVRSMADQLPYFAELDTNQRANVQLVVQTAVVNFVEWLQKP 60 Query 82 HSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGIL 141 G Q FE+VPQDL R I L QTV+M+RV +E FE +P LA+ E+QL LT +L Sbjct 61 EPQTGLALQPFEVVPQDLARHITLSQTVEMIRVALEHFEHYLPALAKDEQQLINLTESVL 120 Query 142 KYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPA 201 +Y R++ F AA AYA+AAEARG+WD+R+EA +VDAV+RGD EL SRAA LNWD +APA Sbjct 121 RYGREIGFAAAAAYAEAAEARGSWDNRLEAVLVDAVIRGDASGELQSRAATLNWDASAPA 180 Query 202 TVLVGTPAPGPNGSNSDGDSERASQD-VRDTAARHGRAALTDVHGTWLVAIVSGQLSPTE 260 TV+VG + DS + + + A RH AAL+ VHG L+ ++SG L + Sbjct 181 TVIVG---------EARADSPTSIPVLIHNIAQRHTGAALSAVHGRKLITVISGTLPSNQ 231 Query 261 KFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPER 320 FL +LL F DAPV+IGPTAP L A SA EA++ ++AVAGWRGAPRP + ELLPER Sbjct 232 TFLAELLKLFDDAPVIIGPTAPSLAEARTSAMEALAALDAVAGWRGAPRPAHSDELLPER 291 Query 321 ALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLK 380 L GD SA AL V+ PL AG L+ TL++YLD GG ++ACAR+LFVHPNTVRYRL+ Sbjct 292 VLNGDLSAARALTEQVVAPLLAAGSNLLTTLESYLDSGGGVDACARELFVHPNTVRYRLR 351 Query 381 RITDFTGRDPTQPRDAYVLRVAATVGQLN 409 RI TG DPT PRD +VLRVA+ +G+++ Sbjct 352 RIATVTGLDPTDPRDGFVLRVASIIGKIS 380 >gi|257055082|ref|YP_003132914.1| regulator of polyketide synthase expression [Saccharomonospora viridis DSM 43017] gi|256584954|gb|ACU96087.1| regulator of polyketide synthase expression [Saccharomonospora viridis DSM 43017] Length=413 Score = 350 bits (898), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 212/408 (52%), Positives = 269/408 (66%), Gaps = 21/408 (5%) Query 7 APVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALV 66 A +RPR+ EL +S LR L++ SGRLA +V+A++E+LP+F + A QRASV L+ Sbjct 14 AAASRPRARQEL----SESTLRALERASGRLAKASVAAIEEQLPWFRRMPADQRASVLLI 69 Query 67 VQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLL 126 Q FV WM D + TA+AF P++L+R I+LRQTV++VR+ ++ FEE +P Sbjct 70 TQAGAAGFVRWMRDSQEALKLTAEAFRSAPRELSRWISLRQTVEIVRLAVDVFEEQLPQF 129 Query 127 ARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPEL 186 A +E+ LT GIL+Y R++AF AAT+YA AAEARG WD+R+EA VVD +VRGD + Sbjct 130 AADDEERAILTEGILRYGREIAFAAATSYAAAAEARGAWDARLEALVVDGIVRGDAEESV 189 Query 187 LSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGT 246 LSRAAAL WD A ATVLVG P SD D +VR AAR GR L V G+ Sbjct 190 LSRAAALGWDPAADATVLVGNP-------PSD-DPPSVVFEVRSKAARVGRPVLLGVQGS 241 Query 247 WLVAIVSGQLSPTEKFLKD------LLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNA 300 LV +V+G PTE KD L AFA+ PVV GPT L AHRSA+EA+SG+ A Sbjct 242 RLVVVVAG---PTEGTAKDEEILPVLSTAFAEGPVVAGPTVSSLAEAHRSAAEALSGLRA 298 Query 301 VAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGA 360 V GW APRP + +LLPERAL GDA A L + RPL +AGP L+ET++ YL+ GG Sbjct 299 VVGWPAAPRPTRSIDLLPERALAGDAEAERVLVEQIARPLEEAGPALLETIETYLESGGV 358 Query 361 IEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 +E CAR+LFVHPNTVRYRLK+ T+ TGR+ PRDA VLR A TVG+L Sbjct 359 LETCARQLFVHPNTVRYRLKKATELTGRNAADPRDALVLRTALTVGRL 406 >gi|254551286|ref|ZP_05141733.1| hypothetical protein Mtube_12623 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] Length=192 Score = 343 bits (879), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 172/173 (99%), Positives = 173/173 (100%), Gaps = 0/173 (0%) Query 1 VNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 +NDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR Sbjct 1 MNDNQLAPVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQR 60 Query 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE Sbjct 61 ASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFE 120 Query 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASV 173 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASV Sbjct 121 EVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASV 173 >gi|256375466|ref|YP_003099126.1| PucR family transcriptional regulator [Actinosynnema mirum DSM 43827] gi|255919769|gb|ACU35280.1| putative transcriptional regulator, PucR family [Actinosynnema mirum DSM 43827] Length=393 Score = 339 bits (869), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 196/382 (52%), Positives = 259/382 (68%), Gaps = 9/382 (2%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LR L++ SG LA+ V+ M+ RLP+F + A QRASV L+VQ V FV W+ D V Sbjct 14 LRNLERASGDLASSTVAEMERRLPWFRRMPADQRASVLLLVQNGVAGFVAWLQDLQPAVR 73 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 TA+AF P+D++R ++LRQTV++VR+ +E FE+ +P+LA + + LT +L+Y R+ Sbjct 74 LTAEAFRSAPKDISRWVSLRQTVELVRIALELFEQRLPVLAADDAEHAHLTGAVLRYGRE 133 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF+AAT+YA AAEARG WD+R+EA VVD VVRGD LLSRA+AL W+ APATVLVG Sbjct 134 IAFSAATSYAAAAEARGAWDARLEALVVDGVVRGDAEESLLSRASALGWEPGAPATVLVG 193 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDL 266 P SD D ++ +VR AAR GR L V G+ LV ++ G + + L + Sbjct 194 NPP-------SD-DPQQVIYEVRSRAARSGRQVLLSVQGSRLVLVLGGD-TEADDVLGRM 244 Query 267 LAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDA 326 AF D VV GPT P + AHRSA++A+SG+ AV GW APRPV + +LLPERAL GD Sbjct 245 AQAFGDGAVVAGPTMPSIAEAHRSAADALSGLRAVVGWPAAPRPVRSLDLLPERALAGDP 304 Query 327 SAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFT 386 A L + RPL +AG L+ET+D +L+ GG +EACARKLFVHPNTVRYRL+R T+ T Sbjct 305 EAEWQLVDRITRPLEEAGGALLETVDTFLEVGGVLEACARKLFVHPNTVRYRLRRATELT 364 Query 387 GRDPTQPRDAYVLRVAATVGQL 408 GR+ PRDA VLR+A +VG+L Sbjct 365 GRNANDPRDALVLRIALSVGRL 386 >gi|340525424|gb|AEK40629.1| hypothetical protein RAM_10695 [Amycolatopsis mediterranei S699] Length=395 Score = 336 bits (862), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 198/388 (52%), Positives = 252/388 (65%), Gaps = 17/388 (4%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LRRL+ SG LA+ +++ M++RLP+FA L A QRASV L+ Q FV W+ D + Sbjct 12 LRRLEHASGSLASASIAVMEQRLPWFARLPADQRASVLLITQAGAAGFVSWLRDSKEALK 71 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 T +AF P +L+R I+LRQ V MVR+ +E FEE +P A +E + AL GIL+Y R+ Sbjct 72 LTTEAFRDAPAELSRWISLRQAVGMVRLAIEVFEEQLPDFAANEAERAALIEGILRYGRE 131 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF AA +YA AAEARG WD+R+EA VVD +VRGD +LSRA AL W+ +A ATVLVG Sbjct 132 IAFAAANSYAAAAEARGAWDARLEALVVDGIVRGDAEESVLSRATALGWEPSAAATVLVG 191 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKD- 265 P D +VR AAR GR L V G+ LV +V G PT+ +K+ Sbjct 192 NP--------PSEDPPTVVFEVRSRAARVGRPVLLSVQGSRLVVVVGG---PTDGGVKER 240 Query 266 -----LLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPER 320 + AFA+ PVV GPT P L AH SA+EA+SG+ AV GW GAPRPV + +LLPER Sbjct 241 EILTRMSVAFAEGPVVAGPTVPSLAEAHHSATEALSGLRAVVGWPGAPRPVRSADLLPER 300 Query 321 ALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLK 380 AL GDA A L + RPL +AGPTL T++AYL+ GG +E CA+ LFVHPNTVRYRL+ Sbjct 301 ALSGDAEAERLLVDTIARPLEEAGPTLQRTVEAYLESGGVLETCAKTLFVHPNTVRYRLR 360 Query 381 RITDFTGRDPTQPRDAYVLRVAATVGQL 408 + D TG T PRDA VLR+A TVG+L Sbjct 361 KAADLTGCQATDPRDALVLRIALTVGRL 388 >gi|300784021|ref|YP_003764312.1| hypothetical protein AMED_2104 [Amycolatopsis mediterranei U32] gi|299793535|gb|ADJ43910.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length=404 Score = 336 bits (861), Expect = 5e-90, Method: Compositional matrix adjust. Identities = 198/388 (52%), Positives = 252/388 (65%), Gaps = 17/388 (4%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LRRL+ SG LA+ +++ M++RLP+FA L A QRASV L+ Q FV W+ D + Sbjct 21 LRRLEHASGSLASASIAVMEQRLPWFARLPADQRASVLLITQAGAAGFVSWLRDSKEALK 80 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 T +AF P +L+R I+LRQ V MVR+ +E FEE +P A +E + AL GIL+Y R+ Sbjct 81 LTTEAFRDAPAELSRWISLRQAVGMVRLAIEVFEEQLPDFAANEAERAALIEGILRYGRE 140 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF AA +YA AAEARG WD+R+EA VVD +VRGD +LSRA AL W+ +A ATVLVG Sbjct 141 IAFAAANSYAAAAEARGAWDARLEALVVDGIVRGDAEESVLSRATALGWEPSAAATVLVG 200 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKD- 265 P D +VR AAR GR L V G+ LV +V G PT+ +K+ Sbjct 201 NP--------PSEDPPTVVFEVRSRAARVGRPVLLSVQGSRLVVVVGG---PTDGGVKER 249 Query 266 -----LLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPER 320 + AFA+ PVV GPT P L AH SA+EA+SG+ AV GW GAPRPV + +LLPER Sbjct 250 EILTRMSVAFAEGPVVAGPTVPSLAEAHHSATEALSGLRAVVGWPGAPRPVRSADLLPER 309 Query 321 ALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLK 380 AL GDA A L + RPL +AGPTL T++AYL+ GG +E CA+ LFVHPNTVRYRL+ Sbjct 310 ALSGDAEAERLLVDTIARPLEEAGPTLQRTVEAYLESGGVLETCAKTLFVHPNTVRYRLR 369 Query 381 RITDFTGRDPTQPRDAYVLRVAATVGQL 408 + D TG T PRDA VLR+A TVG+L Sbjct 370 KAADLTGCQATDPRDALVLRIALTVGRL 397 >gi|134098113|ref|YP_001103774.1| regulator of polyketide synthase expression-like [Saccharopolyspora erythraea NRRL 2338] gi|291007428|ref|ZP_06565401.1| regulator of polyketide synthase expression-like protein [Saccharopolyspora erythraea NRRL 2338] gi|133910736|emb|CAM00849.1| regulator of polyketide synthase expression-like [Saccharopolyspora erythraea NRRL 2338] Length=365 Score = 315 bits (808), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 192/366 (53%), Positives = 244/366 (67%), Gaps = 10/366 (2%) Query 45 MQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIA 104 M++RLP+F + A QRASV LV QT V NFV W+ DP + TA+AF P+DL+R ++ Sbjct 1 MEQRLPWFRRMPADQRASVLLVTQTGVSNFVAWLQDPTEAIRLTAEAFRSAPRDLSRWVS 60 Query 105 LRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGT 164 LRQT+++VR ++ FE +P LA ++ T L IL+Y+R++AF AAT+YA AAEARG Sbjct 61 LRQTLELVRAAIDVFERQLPELADEPDERTLLREWILRYTREIAFAAATSYAAAAEARGA 120 Query 165 WDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERA 224 WD+R+EA VVD +VRGD LLSRAAAL W+ ++ ATVLVGT AP SD D Sbjct 121 WDARLEALVVDGIVRGDAEESLLSRAAALGWEPSSEATVLVGT-AP------SD-DPPTI 172 Query 225 SQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSP-TEKFLKDLLA-AFADAPVVIGPTAP 282 VR AAR GR L V GT LV + G TE LA AF D PVV+GPT P Sbjct 173 VYQVRSRAARVGRPVLLGVQGTRLVVVFGGPADDRTENEAASRLAEAFDDGPVVVGPTVP 232 Query 283 MLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDASAIVALHTDVMRPLAD 342 L AHRSAS+A+S + +V W APRPV + +LLPERAL GD A L ++ PL D Sbjct 233 SLAEAHRSASDAMSALRSVVAWPTAPRPVASADLLPERALAGDPEAERQLVERIVLPLVD 292 Query 343 AGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVA 402 AG L+ET+D YL+ GG +E CAR+L+VHPNTVRYRL+R+ + TGR P+ PRDA+VLRV Sbjct 293 AGGALMETVDTYLEVGGVLENCARQLYVHPNTVRYRLRRVAELTGRTPSNPRDAHVLRVG 352 Query 403 ATVGQL 408 VG+L Sbjct 353 LAVGRL 358 >gi|302525291|ref|ZP_07277633.1| conserved hypothetical protein [Streptomyces sp. AA4] gi|302434186|gb|EFL06002.1| conserved hypothetical protein [Streptomyces sp. AA4] Length=403 Score = 300 bits (767), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 199/385 (52%), Positives = 247/385 (65%), Gaps = 11/385 (2%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LR L+ SGRLA+ +V+ M+ RL +FA L A QRASV L+ QT FV W+ D + Sbjct 20 LRSLEHASGRLASASVAEMERRLVWFARLPADQRASVLLITQTGASGFVAWLRDSKEALK 79 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 T +AF P +++R I+LRQ V MVR+ +E FEE +P A SE + AL GIL+Y R+ Sbjct 80 LTTEAFRDAPTEVSRWISLRQAVAMVRLAIEVFEEQLPEFAASETERAALIEGILRYGRE 139 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF AA +YA AAEARG WD+R+EA VVD +VRGD +LSRAAAL WD A ATV+VG Sbjct 140 IAFAAANSYAAAAEARGAWDARLEALVVDGIVRGDAEESVLSRAAALGWDPAAAATVMVG 199 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSG--QLSPTEK-FL 263 P D DVR AAR GRA L V G+ LV ++ G + P E+ L Sbjct 200 NP--------PSEDPPTVVFDVRARAARVGRAVLLSVQGSRLVIVIGGPTEGGPKEREIL 251 Query 264 KDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALM 323 + FAD PVV GPT P L AH SA+EA+SG+ AV GW APRPV + +LLPERAL Sbjct 252 ARMATVFADGPVVAGPTVPTLAEAHHSAAEALSGLRAVVGWPAAPRPVRSDDLLPERALS 311 Query 324 GDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRIT 383 GD A L V RPL +AG L T++ YLD GG +E CA+ LFVHPNTVRYRL++ Sbjct 312 GDPGAERLLVDLVARPLEEAGAALQRTVETYLDTGGVLERCAQTLFVHPNTVRYRLRKAA 371 Query 384 DFTGRDPTQPRDAYVLRVAATVGQL 408 + TGR+PT RDA VLRVA TVG+L Sbjct 372 ELTGRNPTDARDALVLRVALTVGRL 396 >gi|337765501|emb|CCB74210.1| conserved protein of unknown function [Streptomyces cattleya NRRL 8057] Length=399 Score = 296 bits (757), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 169/384 (45%), Positives = 234/384 (61%), Gaps = 12/384 (3%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LRRL++ SGRL+ A++ M E+LP++ + R+ + LV Q + F EW P + Sbjct 21 LRRLEKSSGRLSAAAIARMDEQLPWYRAMPPEHRSWIGLVAQAGIAAFTEWFRRPETPQA 80 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 + F P++LTR I+LRQTV+MVR T+E E + +A ++ L +L Y+R+ Sbjct 81 ISTDVFGTAPRELTRAISLRQTVEMVRTTIEVVEAAIDEVAAPGDE-AVLREALLVYARE 139 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF A YA AAEARG WD+R+E+ VV+AV+ G+ +LSRAAAL W++ V++G Sbjct 140 IAFATAQVYAQAAEARGAWDARLESLVVNAVLSGEADEGVLSRAAALGWNSPEHVVVVLG 199 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGR-AALTDVHGTWLVAIVSGQLSPTEKFLKD 265 T AP D D+E + +R A+RH + LT V G LV + G P + KD Sbjct 200 T-AP-------DADNELTVEAIR-RASRHAKLQVLTGVFGDRLVVVAGGSADPI-RVAKD 249 Query 266 LLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGD 325 L+ FA PVV GP L AA RSA A +G+ A A W APRPVLA +LLPERA+ GD Sbjct 250 LIGPFAAGPVVAGPVVGGLLAATRSAQAATAGLKACAAWPDAPRPVLADDLLPERAMAGD 309 Query 326 ASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDF 385 A L ++ RPLA+AG L+ETL YL+ ++E AR LFVHPNTVRYRL+R+TD Sbjct 310 PVARQQLVEEIYRPLAEAGSALLETLSVYLEQASSLEGAARMLFVHPNTVRYRLRRVTDV 369 Query 386 TGRDPTQPRDAYVLRVAATVGQLN 409 TG P+ R A+ LR+A +G+L+ Sbjct 370 TGWSPSDVRSAFTLRIALILGRLS 393 >gi|329934760|ref|ZP_08284801.1| hypothetical protein SGM_0513 [Streptomyces griseoaurantiacus M045] gi|329305582|gb|EGG49438.1| hypothetical protein SGM_0513 [Streptomyces griseoaurantiacus M045] Length=401 Score = 293 bits (751), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 178/402 (45%), Positives = 241/402 (60%), Gaps = 12/402 (2%) Query 8 PVARPRSPLELLDTVPDSLLRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVV 67 P A P P +D + LRRL++ SGRLA +A++ M E LP++ + A R+ + LV Sbjct 4 PEAGPAGPSASVDLSHAATLRRLEKSSGRLAAQAIARMDETLPWYRAMPAENRSWIGLVA 63 Query 68 QTAVVNFVEWMHDPHSDVGYTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLA 127 Q + F EW P + + F P++LTR I LRQTV+MVR T+E E + +A Sbjct 64 QAGIAAFTEWFRHPETPQAISTDVFGTAPRELTRAITLRQTVEMVRTTIEVMESAIDEVA 123 Query 128 RSEEQLTALTVGILKYSRDLAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELL 187 ++ + L +L Y+R++AF A YA AAEARG WD+R+E+ VV+AV+ G+ + Sbjct 124 APGDE-SVLREALLVYAREIAFATAQVYAQAAEARGAWDARLESLVVNAVLSGEADEGAV 182 Query 188 SRAAALNWDTTAPATVLVGTPAPGPNGSNSDGDSERASQDVRDTAARHGRA-ALTDVHGT 246 SRAAAL W++ V++GT AP DGDSE + +R AARH + LT V G Sbjct 183 SRAAALGWNSPDHVCVVLGT-AP-------DGDSELTVEAIR-RAARHAKVQVLTGVLGD 233 Query 247 WLVAIVSGQLSPTEKFLKDLLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRG 306 LV I G P + K L+ FA PVV GP P L AA RSA A +G+ A + W+ Sbjct 234 RLVVIAGGDNDPL-QVAKSLIGPFAAGPVVAGPIVPDLQAATRSAQAAAAGLKACSAWQD 292 Query 307 APRPVLARELLPERALMGDASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACAR 366 APRPVLA +LLPERA+ GD SA L ++ RPL AG L+ETL YL+ ++E AR Sbjct 293 APRPVLADDLLPERAMAGDPSAREQLVEEIYRPLEQAGSALLETLSVYLEQASSLEGAAR 352 Query 367 KLFVHPNTVRYRLKRITDFTGRDPTQPRDAYVLRVAATVGQL 408 LFVHPNTVRYRL+R+TD TG P+ R A+ LR+A +G+L Sbjct 353 MLFVHPNTVRYRLRRVTDVTGWSPSDVRSAFTLRIALILGRL 394 >gi|302534251|ref|ZP_07286593.1| conserved hypothetical protein [Streptomyces sp. C] gi|302443146|gb|EFL14962.1| conserved hypothetical protein [Streptomyces sp. C] Length=403 Score = 291 bits (746), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 167/382 (44%), Positives = 228/382 (60%), Gaps = 10/382 (2%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LRRL++ SGRLA A++ M E LP++ + R+ + LV Q + F EW P + Sbjct 25 LRRLEKSSGRLAANAIARMDENLPWYRAMPPENRSWIGLVAQAGIAAFTEWFRHPETPQA 84 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 + F P++LTR I LRQTV+MVR T+E E + +A ++ + L +L Y+R+ Sbjct 85 ISTDVFGTAPRELTRAITLRQTVEMVRTTIEVMEVAIDEVAAPGDE-SILREALLVYARE 143 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF A YA AAEARG WD+R+E+ VV+AV+ G+ LSRAAAL W++ V++G Sbjct 144 IAFATAQVYAQAAEARGAWDARLESLVVNAVLSGEADEGALSRAAALGWNSPEHVCVVLG 203 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDL 266 T AP +GDSE + +R A H LT V G LV I G +P + K L Sbjct 204 T-AP-------EGDSELTVEAIRRAARHHKLQVLTGVLGDRLVVIAGGSDNPM-QVAKSL 254 Query 267 LAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDA 326 + FA PVV GP P L A +SA A +G+ A W+ APRPVLA +LLPERA+ D Sbjct 255 IGPFAAGPVVAGPVVPDLLNATKSAQAAAAGLKACTAWQDAPRPVLADDLLPERAIASDP 314 Query 327 SAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFT 386 SA L ++ RPL +AG L+ETL YL+ ++E AR LFVHPNTVRYRL+R+TD T Sbjct 315 SAREQLVEEIYRPLEEAGSALLETLSVYLEQASSLEGAARMLFVHPNTVRYRLRRVTDVT 374 Query 387 GRDPTQPRDAYVLRVAATVGQL 408 G P+ R A+ LR+A +G+L Sbjct 375 GWSPSDVRSAFTLRIALILGRL 396 >gi|254382856|ref|ZP_04998212.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194341757|gb|EDX22723.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length=403 Score = 290 bits (743), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 167/382 (44%), Positives = 227/382 (60%), Gaps = 10/382 (2%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 LRRL++ SGRLA A++ M E LP++ + R+ + LV Q + F EW P + Sbjct 25 LRRLEKSSGRLAANAITRMDETLPWYRAMPPENRSWIGLVAQAGIAAFTEWFRHPETPQA 84 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 + F P++LTR I LRQTV+MVR T+E E + +A ++ + L +L Y+R+ Sbjct 85 ISTDVFGTAPRELTRAITLRQTVEMVRTTIEVMETAIEEVAAPGDE-SILREALLVYARE 143 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF A YA AAEARG WD+R+E+ VV+AV+ G+ LSRAAAL W++ V++G Sbjct 144 IAFATAQVYAQAAEARGAWDARLESLVVNAVLSGEADEGALSRAAALGWNSPEHVCVVLG 203 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGRAALTDVHGTWLVAIVSGQLSPTEKFLKDL 266 T AP DGDSE + +R A H LT V G LV I G +P + K L Sbjct 204 T-AP-------DGDSELTVEAIRRAARHHKLQVLTGVLGDRLVVIAGGSDNPL-QVAKSL 254 Query 267 LAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGDA 326 + FA PVV GP L A +SA A +G+ A W+ APRPVLA +LLPERA+ D Sbjct 255 IGPFAAGPVVAGPVVSDLLNATKSAQAAAAGLKACTAWQDAPRPVLADDLLPERAIASDP 314 Query 327 SAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDFT 386 SA L ++ RPL +AG L+ETL YL+ ++E AR LFVHPNTVRYRL+R+TD T Sbjct 315 SAREQLVEEIYRPLEEAGSALLETLSVYLEQASSLEGAARMLFVHPNTVRYRLRRVTDVT 374 Query 387 GRDPTQPRDAYVLRVAATVGQL 408 G P+ R A+ LR+A +G+L Sbjct 375 GWSPSDVRSAFTLRIALILGRL 396 >gi|182438902|ref|YP_001826621.1| hypothetical protein SGR_5109 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326779559|ref|ZP_08238824.1| transcriptional regulator, CdaR [Streptomyces cf. griseus XylebKG-1] gi|178467418|dbj|BAG21938.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659892|gb|EGE44738.1| transcriptional regulator, CdaR [Streptomyces griseus XylebKG-1] Length=399 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 171/389 (44%), Positives = 235/389 (61%), Gaps = 12/389 (3%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 L+RL+Q SGRLA A++ M E LP++ + R+ + LV Q + F EW P + Sbjct 21 LKRLEQSSGRLAANAIARMDESLPWYRAMPPENRSWIGLVAQAGIAAFTEWFRHPETPQA 80 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 + F P++LTR I LRQTV+MVR T+E E + +A ++ + L +L Y+R+ Sbjct 81 ISTDVFGTAPRELTRAITLRQTVEMVRTTIEVMEAAIDEVAAPGDE-SVLREALLVYARE 139 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF A YA AAEARG WD+R+E+ VV+AV+ G+ +SRAAAL W++ V++G Sbjct 140 IAFATAQVYAQAAEARGAWDARLESLVVNAVLSGEADEGAVSRAAALGWNSPEHVCVILG 199 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGR-AALTDVHGTWLVAIVSGQLSPTEKFLKD 265 T AP DGDSE + +R AARH + LT V G LV I G +P + K Sbjct 200 T-AP-------DGDSELTVEAIR-RAARHAKLQVLTGVLGNRLVVIAGGSDNPL-QVAKG 249 Query 266 LLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGD 325 L+ +A PVV GP P L AA RSA A +G+ A + W+ APRPVLA +LLPERA+ GD Sbjct 250 LIGPYAAGPVVAGPVVPDLLAATRSAQAAAAGLKACSAWQDAPRPVLADDLLPERAMAGD 309 Query 326 ASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDF 385 +A L ++ RPL +AG L+ETL YL+ ++E AR LFVHPNTVRYRL+R+TD Sbjct 310 PAARDQLVEEIYRPLEEAGSALLETLSVYLEQASSLEGAARMLFVHPNTVRYRLRRVTDV 369 Query 386 TGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 TG P+ R A+ LR+A +G+L P Sbjct 370 TGWSPSDVRSAFTLRIALILGRLAAADPQ 398 >gi|239987410|ref|ZP_04708074.1| hypothetical protein SrosN1_08904 [Streptomyces roseosporus NRRL 11379] gi|291444367|ref|ZP_06583757.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347314|gb|EFE74218.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length=399 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 171/389 (44%), Positives = 235/389 (61%), Gaps = 12/389 (3%) Query 27 LRRLKQYSGRLATEAVSAMQERLPFFADLEASQRASVALVVQTAVVNFVEWMHDPHSDVG 86 L+RL+Q SGRLA A++ M E LP++ + R+ + LV Q + F EW P + Sbjct 21 LKRLEQSSGRLAANAIARMDESLPWYRAMPPENRSWIGLVAQAGIAAFTEWFRHPETPQA 80 Query 87 YTAQAFELVPQDLTRRIALRQTVDMVRVTMEFFEEVVPLLARSEEQLTALTVGILKYSRD 146 + F P++LTR I LRQTV+MVR T+E E + +A ++ + L +L Y+R+ Sbjct 81 ISTDVFGTAPRELTRAITLRQTVEMVRTTIEVMEAAIEEVAAPGDE-SLLREALLVYARE 139 Query 147 LAFTAATAYADAAEARGTWDSRMEASVVDAVVRGDTGPELLSRAAALNWDTTAPATVLVG 206 +AF A YA AAEARG WD+R+E+ VV+AV+ G+ +SRAAAL W++ V++G Sbjct 140 IAFATAQVYAQAAEARGAWDARLESLVVNAVLSGEADEGAVSRAAALGWNSPEHVCVVLG 199 Query 207 TPAPGPNGSNSDGDSERASQDVRDTAARHGR-AALTDVHGTWLVAIVSGQLSPTEKFLKD 265 T AP DGDSE + +R AARH + LT V G LV I G +P + K Sbjct 200 T-AP-------DGDSELTVEAIR-RAARHAKLQVLTGVLGNRLVVIAGGSDNPL-QVAKG 249 Query 266 LLAAFADAPVVIGPTAPMLTAAHRSASEAISGMNAVAGWRGAPRPVLARELLPERALMGD 325 L+ +A PVV GP P L AA RSA A +G+ A + W+ APRPVLA +LLPERA+ GD Sbjct 250 LIGPYAAGPVVAGPVVPDLLAATRSAQAAAAGLKACSAWQDAPRPVLADDLLPERAMAGD 309 Query 326 ASAIVALHTDVMRPLADAGPTLIETLDAYLDCGGAIEACARKLFVHPNTVRYRLKRITDF 385 +A L ++ RPL +AG L+ETL YL+ ++E AR LFVHPNTVRYRL+R+TD Sbjct 310 PAARDQLVEEIYRPLEEAGSALLETLSVYLEQASSLEGAARMLFVHPNTVRYRLRRVTDV 369 Query 386 TGRDPTQPRDAYVLRVAATVGQLNYPTPH 414 TG P+ R A+ LR+A +G+L P Sbjct 370 TGWSPSDVRSAFTLRIALILGRLAAADPQ 398 Lambda K H 0.318 0.131 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 831576415104 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40