BLAST Search Results

BLASTP 2.2.25+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schäffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schäffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,229,318 sequences; 5,219,829,388 total letters Query= Rv2253 Length=167 Score E Sequences producing significant alignments: (Bits) Value gi|15609390|ref|NP_216769.1| hypothetical protein Rv2253 [Mycoba... 345 9e-94 gi|289443763|ref|ZP_06433507.1| secreted protein [Mycobacterium ... 344 3e-93 gi|339632279|ref|YP_004723921.1| hypothetical protein MAF_22640 ... 342 1e-92 gi|294993488|ref|ZP_06799179.1| secreted protein [Mycobacterium ... 328 2e-88 gi|240170090|ref|ZP_04748749.1| putative secreted unknown protei... 254 3e-66 gi|183983336|ref|YP_001851627.1| hypothetical protein MMAR_3346 ... 206 1e-51 gi|296171963|ref|ZP_06853008.1| conserved hypothetical protein [... 156 1e-36 gi|342858503|ref|ZP_08715158.1| hypothetical protein MCOL_06496 ... 150 6e-35 gi|262203677|ref|YP_003274885.1| hypothetical protein Gbro_3814 ... 139 2e-31 gi|254821277|ref|ZP_05226278.1| hypothetical protein MintA_15167... 139 2e-31 gi|240169528|ref|ZP_04748187.1| hypothetical protein MkanA1_0945... 138 3e-31 gi|111017643|ref|YP_700615.1| hypothetical protein RHA1_ro00622 ... 135 2e-30 gi|342858052|ref|ZP_08714708.1| hypothetical protein MCOL_04220 ... 133 7e-30 gi|108800988|ref|YP_641185.1| hypothetical protein Mmcs_4024 [My... 130 5e-29 gi|120405476|ref|YP_955305.1| hypothetical protein Mvan_4524 [My... 129 2e-28 gi|183984095|ref|YP_001852386.1| hypothetical protein MMAR_4124 ... 129 2e-28 gi|325676792|ref|ZP_08156465.1| hypothetical protein HMPREF0724_... 128 2e-28 gi|226308210|ref|YP_002768170.1| hypothetical protein RER_47230 ... 127 4e-28 gi|145222761|ref|YP_001133439.1| hypothetical protein Mflv_2173 ... 126 9e-28 gi|315443228|ref|YP_004076107.1| hypothetical protein Mspyr1_160... 126 1e-27 gi|312139756|ref|YP_004007092.1| hypothetical protein REQ_23650 ... 126 1e-27 gi|229489127|ref|ZP_04382993.1| conserved hypothetical protein [... 126 1e-27 gi|226359943|ref|YP_002777721.1| hypothetical protein ROP_05290 ... 122 2e-26 gi|343924470|ref|ZP_08764019.1| hypothetical protein GOALK_016_0... 111 3e-23 gi|116747977|ref|YP_844664.1| polysaccharide export protein [Syn... 37.7 0.55 gi|46135901|ref|XP_389642.1| hypothetical protein FG09466.1 [Gib... 37.0 0.88 gi|147802621|emb|CAN77528.1| hypothetical protein VITISV_041424 ... 34.7 4.6 gi|167584894|ref|ZP_02377282.1| L-carnitine dehydratase/bile aci... 34.3 5.8 gi|68535285|ref|YP_249990.1| putative cell surface protein [Cory... 34.3 6.9 >gi|15609390|ref|NP_216769.1| hypothetical protein Rv2253 [Mycobacterium tuberculosis H37Rv] gi|15841745|ref|NP_336782.1| hypothetical protein MT2314 [Mycobacterium tuberculosis CDC1551] gi|31793433|ref|NP_855926.1| hypothetical protein Mb2277 [Mycobacterium bovis AF2122/97] 66 more sequence titles Length=167 Score = 345 bits (886), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 167/167 (100%), Positives = 167/167 (100%), Gaps = 0/167 (0%) Query 1 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH 60 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH Sbjct 1 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH 60 Query 61 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI 120 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI Sbjct 61 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI 120 Query 121 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG Sbjct 121 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 >gi|289443763|ref|ZP_06433507.1| secreted protein [Mycobacterium tuberculosis T46] gi|289570373|ref|ZP_06450600.1| secreted protein [Mycobacterium tuberculosis T17] gi|289750851|ref|ZP_06510229.1| secreted protein [Mycobacterium tuberculosis T92] gi|289416682|gb|EFD13922.1| secreted protein [Mycobacterium tuberculosis T46] gi|289544127|gb|EFD47775.1| secreted protein [Mycobacterium tuberculosis T17] gi|289691438|gb|EFD58867.1| secreted protein [Mycobacterium tuberculosis T92] Length=167 Score = 344 bits (882), Expect = 3e-93, Method: Compositional matrix adjust. Identities = 166/167 (99%), Positives = 166/167 (99%), Gaps = 0/167 (0%) Query 1 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH 60 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH Sbjct 1 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH 60 Query 61 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI 120 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI Sbjct 61 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI 120 Query 121 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 EYAPAKSITAY PGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG Sbjct 121 EYAPAKSITAYKPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 >gi|339632279|ref|YP_004723921.1| hypothetical protein MAF_22640 [Mycobacterium africanum GM041182] gi|339331635|emb|CCC27334.1| putative secreted unknown protein [Mycobacterium africanum GM041182] Length=167 Score = 342 bits (877), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 166/167 (99%), Positives = 166/167 (99%), Gaps = 0/167 (0%) Query 1 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPH 60 MSGHRKKAMLALAAASLAATLAPNAVAAAEPS NGQYLVTLSANAKTGTSMAANRPEYPH Sbjct 1 MSGHRKKAMLALAAASLAATLAPNAVAAAEPSRNGQYLVTLSANAKTGTSMAANRPEYPH 60 Query 61 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI 120 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI Sbjct 61 KANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTI 120 Query 121 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG Sbjct 121 EYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 >gi|294993488|ref|ZP_06799179.1| secreted protein [Mycobacterium tuberculosis 210] gi|297731839|ref|ZP_06960957.1| secreted protein [Mycobacterium tuberculosis KZN R506] Length=159 Score = 328 bits (841), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 159/159 (100%), Positives = 159/159 (100%), Gaps = 0/159 (0%) Query 9 MLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSS 68 MLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSS Sbjct 1 MLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSS 60 Query 69 RCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIEYAPAKSI 128 RCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIEYAPAKSI Sbjct 61 RCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIEYAPAKSI 120 Query 129 TAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 167 TAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG Sbjct 121 TAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPIVG 159 >gi|240170090|ref|ZP_04748749.1| putative secreted unknown protein [Mycobacterium kansasii ATCC 12478] Length=175 Score = 254 bits (649), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 122/167 (74%), Positives = 136/167 (82%), Gaps = 3/167 (1%) Query 1 MSGHRKKAMLALAAASLAATL---APNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPE 57 MSG R+ A++ LAAASL + AP A A PSWNGQY+VT ANAKTGTS+AA+ PE Sbjct 1 MSGLRQTALVTLAAASLCCVVTSEAPRAAADEGPSWNGQYVVTFGANAKTGTSIAASGPE 60 Query 58 YPHKANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPD 117 Y H+A Y+FSS CA+ VCIATV D PP KNEFI RPIEYTWNG+QWVRE +W+WDCLLPD Sbjct 61 YAHRAKYSFSSSCAAGVCIATVTDGPPAKNEFIQRPIEYTWNGSQWVRETTWKWDCLLPD 120 Query 118 GTIEYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKP 164 GTIEY PAKSI AYTPG +GILTGVFHTDI SG CKGNVDMPVSAKP Sbjct 121 GTIEYDPAKSIAAYTPGPHGILTGVFHTDITSGACKGNVDMPVSAKP 167 >gi|183983336|ref|YP_001851627.1| hypothetical protein MMAR_3346 [Mycobacterium marinum M] gi|183176662|gb|ACC41772.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=172 Score = 206 bits (523), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 103/167 (62%), Positives = 130/167 (78%), Gaps = 2/167 (1%) Query 1 MSGHRKKAMLALAAASLAATL--APNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEY 58 MS + + A AAA +L AP A A +WNG Y++TL+ANAKTGTS+AA++PE+ Sbjct 1 MSRPHQTGLGAAAAAWFCVSLCFAPPAYAGEVAAWNGDYILTLAANAKTGTSIAASQPEF 60 Query 59 PHKANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDG 118 H+ + + SS C++ VC ATV + PPPKNE +P+ IE+TWNG+QWVRE++W WDCLLPDG Sbjct 61 AHRTSVSISSSCSAGVCTATVNNPPPPKNESMPQSIEFTWNGSQWVREMTWNWDCLLPDG 120 Query 119 TIEYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 TIEY PAKSI+ YTPG YGILTGVFHT+I SG CKGNVDMP+SAKP+ Sbjct 121 TIEYNPAKSISVYTPGDYGILTGVFHTNIYSGACKGNVDMPLSAKPV 167 >gi|296171963|ref|ZP_06853008.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295893896|gb|EFG73668.1| conserved hypothetical protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length=175 Score = 156 bits (394), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 75/167 (45%), Positives = 101/167 (61%), Gaps = 3/167 (1%) Query 1 MSGHRKKAMLALAAASL--AATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEY 58 M+ R K + L AASL A L P A A PSWNGQY +T K GTSMA PE Sbjct 10 MAADRLKNVAGLCAASLPVALPLCPAAFAD-NPSWNGQYAITFMVGPKAGTSMAVGNPEV 68 Query 59 PHKANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDG 118 H Y F S C + C+AT+V PPP N +P+P+++TW+G W + +QWDC++PD Sbjct 69 QHTETYGFRSSCTNGKCVATIVSGPPPSNPTVPQPVQFTWDGKSWSQVSDFQWDCMMPDT 128 Query 119 TIEYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 +IE+ PA++ YTP G L G+ HTDI SG C+G +DM + A+ + Sbjct 129 SIEWNPARATVRYTPQPDGSLDGLMHTDILSGACQGTIDMGMKAERV 175 >gi|342858503|ref|ZP_08715158.1| hypothetical protein MCOL_06496 [Mycobacterium colombiense CECT 3035] gi|342134207|gb|EGT87387.1| hypothetical protein MCOL_06496 [Mycobacterium colombiense CECT 3035] Length=166 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 65/138 (48%), Positives = 88/138 (64%), Gaps = 0/138 (0%) Query 28 AAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKN 87 A PSWNGQY +T K GTSMA PE H Y S C + C+AT+V PPP N Sbjct 29 ADNPSWNGQYAITFMVGPKAGTSMAVGDPETQHTETYGLRSSCTNGKCVATIVSGPPPTN 88 Query 88 EFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIEYAPAKSITAYTPGQYGILTGVFHTDI 147 +P+P+++TW+G W + +QWDC++PD TI++ PA++ T YTP G L GV HTDI Sbjct 89 PTVPQPVQFTWDGKSWSQTNDFQWDCMMPDTTIQWNPARAQTRYTPQPDGSLAGVMHTDI 148 Query 148 ASGTCKGNVDMPVSAKPI 165 SG C+G +DM ++A P+ Sbjct 149 LSGACQGTIDMDMTAVPV 166 >gi|262203677|ref|YP_003274885.1| hypothetical protein Gbro_3814 [Gordonia bronchialis DSM 43247] gi|262087024|gb|ACY22992.1| hypothetical protein Gbro_3814 [Gordonia bronchialis DSM 43247] Length=173 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 76/162 (47%), Positives = 97/162 (60%), Gaps = 2/162 (1%) Query 5 RKKAMLALAAASLAATLAPNAVAA-AEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKAN 63 R ++ LAA A A AA A PSWNGQ+ +T A +KTGTS+AA + E Sbjct 2 RTSVVMILAAMLTATGFVIGAGAAEAAPSWNGQWTLTRYAASKTGTSLAARQREPDFSNV 61 Query 64 YTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-Y 122 YTF++RC++ C+ATVVD PP N IPRP YTWNG W+ + WQWDC + G + + Sbjct 62 YTFATRCSAGKCVATVVDGPPAANPTIPRPPRYTWNGATWMEQFDWQWDCYMGAGKPKVW 121 Query 123 APAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKP 164 APA S+ YTP + G TG + T I SG C+G V M V A P Sbjct 122 APAHSVAWYTPQRDGTKTGTWRTVIDSGPCRGTVVMAVKATP 163 >gi|254821277|ref|ZP_05226278.1| hypothetical protein MintA_15167 [Mycobacterium intracellulare ATCC 13950] Length=156 Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/136 (49%), Positives = 88/136 (65%), Gaps = 1/136 (0%) Query 28 AAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKN 87 A PSWNG+Y + A KTGTS+AA + E A+Y F++ C+S C+AT D P PKN Sbjct 15 AVSPSWNGKYSLVRYAAGKTGTSVAATQAEATFSADYVFTTACSSGRCVATATDGPTPKN 74 Query 88 EFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAPAKSITAYTPGQYGILTGVFHTD 146 +PRP YTW+G +WV +QWDC + +G + +APA+S YTP G L GV+HTD Sbjct 75 PTLPRPSRYTWDGAKWVERFDFQWDCYMGEGVPKVWAPARSWAFYTPQADGSLRGVWHTD 134 Query 147 IASGTCKGNVDMPVSA 162 I G C+G V+MPV+A Sbjct 135 INGGPCRGTVEMPVAA 150 >gi|240169528|ref|ZP_04748187.1| hypothetical protein MkanA1_09456 [Mycobacterium kansasii ATCC 12478] Length=160 Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 71/155 (46%), Positives = 100/155 (65%), Gaps = 2/155 (1%) Query 12 LAAASLAATLAPN-AVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRC 70 LAAA +A P A+ AA PSWNG+Y + A K+GTSMAA + E A+Y F++ C Sbjct 2 LAAAVIAVVGNPAVALHAATPSWNGKYSLVRYAAVKSGTSMAAGQAEPTFSADYVFTTTC 61 Query 71 ASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAPAKSIT 129 ++ C+AT + P PKN +P+P Y W+GT+WV +QWDC L +G + +APA+S Sbjct 62 SAANCVATATNGPTPKNPTLPQPSHYAWDGTKWVEHFDFQWDCYLGEGVAKVWAPARSWA 121 Query 130 AYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKP 164 YTP G + G +HTDI +G C+G+V+MPV+A P Sbjct 122 FYTPQSDGSMRGTWHTDIDNGPCRGSVEMPVAAFP 156 >gi|111017643|ref|YP_700615.1| hypothetical protein RHA1_ro00622 [Rhodococcus jostii RHA1] gi|110817173|gb|ABG92457.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length=175 Score = 135 bits (340), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 72/163 (45%), Positives = 96/163 (59%), Gaps = 3/163 (1%) Query 6 KKAML--ALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKAN 63 +K++L AL A+ P A +PSW+G+Y V A K GTS+AA + E Sbjct 2 RKSLLVVALIASGTVVAAMPAGAAPTQPSWSGEYSVKRFAATKDGTSLAARQWEPDFADT 61 Query 64 YTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-Y 122 YTF + CA D C+ATV D P P N +P P +YTW+GT WV W+WDC +G + + Sbjct 62 YTFETSCADDTCVATVTDGPTPANPTLPLPPQYTWDGTSWVHTYDWEWDCYQGEGVPKVW 121 Query 123 APAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 APA S+ YTP G LTG + TDI SG C+G+V M V+A P+ Sbjct 122 APAHSVAYYTPQPDGTLTGSWRTDIDSGPCEGSVIMDVAAYPV 164 >gi|342858052|ref|ZP_08714708.1| hypothetical protein MCOL_04220 [Mycobacterium colombiense CECT 3035] gi|342135385|gb|EGT88551.1| hypothetical protein MCOL_04220 [Mycobacterium colombiense CECT 3035] Length=172 Score = 133 bits (335), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 64/136 (48%), Positives = 90/136 (67%), Gaps = 1/136 (0%) Query 28 AAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKN 87 A PSWNG+Y + A +KTGTS+AA + E A+Y F++ C+S C+AT + P PKN Sbjct 31 ALAPSWNGKYSLVRYAVSKTGTSVAATQAEPTFSADYMFTTACSSGTCVATATNGPTPKN 90 Query 88 EFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAPAKSITAYTPGQYGILTGVFHTD 146 +P+P YTW+G +WV +QWDC + +G + +APA+S Y P G L G +HTD Sbjct 91 PTLPQPSHYTWDGARWVERFDFQWDCYMGEGVSKVWAPARSWAFYAPQPDGSLRGTWHTD 150 Query 147 IASGTCKGNVDMPVSA 162 I+SG CKG+V+MPV+A Sbjct 151 ISSGPCKGSVEMPVAA 166 >gi|108800988|ref|YP_641185.1| hypothetical protein Mmcs_4024 [Mycobacterium sp. MCS] gi|119870129|ref|YP_940081.1| hypothetical protein Mkms_4099 [Mycobacterium sp. KMS] gi|126436825|ref|YP_001072516.1| hypothetical protein Mjls_4254 [Mycobacterium sp. JLS] gi|108771407|gb|ABG10129.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696218|gb|ABL93291.1| conserved hypothetical protein [Mycobacterium sp. KMS] gi|126236625|gb|ABO00026.1| conserved hypothetical protein [Mycobacterium sp. JLS] Length=174 Score = 130 bits (328), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 68/170 (40%), Positives = 97/170 (58%), Gaps = 10/170 (5%) Query 6 KKAMLALAAASL------AATLAPNAVAAAEPS---WNGQYLVTLSANAKTGTSMAANRP 56 ++A++AL+ A++ + P A+A P W G++ V A+ K GTS AA +P Sbjct 4 RRALVALSTAAVVLLAMVGTLVGPLDTASAAPVGQIWTGRFSVVSYASQKAGTSPAAQQP 63 Query 57 EYPHKANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLP 116 E Y F + C+S VCIATVV P N +P+P+ YTW+G +W + WQWDC + Sbjct 64 EADFTGQYVFKTDCSSGVCIATVVSGPRSSNPTVPQPLRYTWDGARWTQSYDWQWDCFMG 123 Query 117 DGTIE-YAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 DG + +APA+S Y P + G L G + TDI G C GNV M V+A P+ Sbjct 124 DGVPKVWAPARSFVYYVPQRDGSLEGSWRTDILGGPCSGNVTMAVAAFPV 173 >gi|120405476|ref|YP_955305.1| hypothetical protein Mvan_4524 [Mycobacterium vanbaalenii PYR-1] gi|119958294|gb|ABM15299.1| conserved hypothetical protein [Mycobacterium vanbaalenii PYR-1] Length=166 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 72/166 (44%), Positives = 91/166 (55%), Gaps = 3/166 (1%) Query 1 MSGHRKKAMLALAAASLAATLAPNAVA-AAEPSWNGQYLVTLSANAKTGTSMAANRPEYP 59 M R +LA A AA + + A AA P W+G+Y V A+ K GTS+AA +PE Sbjct 1 MPARRAHHVLASATLVAAACVCADGTAQAAPPDWSGRYTVVTFASDKLGTSIAARQPEPD 60 Query 60 HKANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLL-PDG 118 YTFS+ C C+AT D P P N IP P YTW+G QWV +WQW+C D Sbjct 61 FSGQYTFSTSCVG-TCVATATDGPAPSNPTIPHPPRYTWDGRQWVFNYNWQWECFRGADV 119 Query 119 TIEYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKP 164 EYA A+S+ Y P G + G + T+I G CKG V MPV+A P Sbjct 120 PTEYAAARSLVFYAPTADGTMYGTWRTEILEGLCKGTVIMPVAAYP 165 >gi|183984095|ref|YP_001852386.1| hypothetical protein MMAR_4124 [Mycobacterium marinum M] gi|183177421|gb|ACC42531.1| conserved hypothetical secreted protein [Mycobacterium marinum M] Length=175 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 66/159 (42%), Positives = 93/159 (59%), Gaps = 3/159 (1%) Query 9 MLALAAASLAATLAPNAVAA--AEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTF 66 +L + AA AP + A A P WNG+Y + A K GTSMAA++ E A+Y F Sbjct 14 VLGVLGGIAAAMFAPPSTPAHAAMPMWNGKYSLVRYAEQKAGTSMAASQMEPTFSADYVF 73 Query 67 SSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAPA 125 + C+++ C+AT + P PKN +P+P Y W+G +WV +QWDC + +G + +APA Sbjct 74 VTACSAEQCVATATNGPTPKNPTLPQPSRYFWDGAKWVERFDFQWDCYMGEGAAKVWAPA 133 Query 126 KSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKP 164 +S Y P G L G +HTDI G C+G V MPV+A P Sbjct 134 RSWAYYAPQPDGSLRGTWHTDIVGGPCQGTVQMPVAALP 172 >gi|325676792|ref|ZP_08156465.1| hypothetical protein HMPREF0724_14248 [Rhodococcus equi ATCC 33707] gi|325552340|gb|EGD22029.1| hypothetical protein HMPREF0724_14248 [Rhodococcus equi ATCC 33707] Length=172 Score = 128 bits (322), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 69/161 (43%), Positives = 94/161 (59%), Gaps = 1/161 (0%) Query 6 KKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYT 65 +KA+ A+A ++ + AA+PSW+G Y V A KTGTS+AA++ E YT Sbjct 2 RKALSAVALVAVWSVAGSLPAGAAQPSWSGDYSVKRFAATKTGTSLAASQWEPDFADVYT 61 Query 66 FSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAP 124 F + C C+ATVV P P N +P+P YTW+G WV W+WDC + +G + +AP Sbjct 62 FETTCTDGTCVATVVGGPAPANPTLPQPARYTWDGASWVHPYDWEWDCWMGEGNPKVWAP 121 Query 125 AKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 A S YTP G L G + TDIASG C G+V M V+A P+ Sbjct 122 AHSEAYYTPQPDGTLVGSWRTDIASGPCAGSVIMDVAAYPV 162 >gi|226308210|ref|YP_002768170.1| hypothetical protein RER_47230 [Rhodococcus erythropolis PR4] gi|226187327|dbj|BAH35431.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length=171 Score = 127 bits (320), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 69/161 (43%), Positives = 94/161 (59%), Gaps = 1/161 (0%) Query 6 KKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYT 65 +K++L +A + AA+ +W+G Y + A KTGTS+AA++ E YT Sbjct 2 RKSLLVVALVATWFVAGAMPAGAADANWSGDYSLKRFAATKTGTSLAASQWEPDFSDTYT 61 Query 66 FSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAP 124 F + C+S VCIATVV P P N +P+P YTW+GT WV W+WDC +G + +AP Sbjct 62 FETDCSSGVCIATVVGGPAPANPTLPQPARYTWDGTSWVHPYDWEWDCYQGEGVPKVWAP 121 Query 125 AKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 A S YTP G L G + TDIASG C+G+V M V A P+ Sbjct 122 AHSEAYYTPQPDGSLKGSWRTDIASGPCEGSVIMHVEAYPV 162 >gi|145222761|ref|YP_001133439.1| hypothetical protein Mflv_2173 [Mycobacterium gilvum PYR-GCK] gi|145215247|gb|ABP44651.1| hypothetical protein Mflv_2173 [Mycobacterium gilvum PYR-GCK] Length=166 Score = 126 bits (317), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 62/136 (46%), Positives = 81/136 (60%), Gaps = 2/136 (1%) Query 31 PSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKNEFI 90 P WNG+Y V A+ K GTS+A +PE A YTFS+ C C+AT D P P N I Sbjct 32 PDWNGRYTVVTFASQKIGTSIATRQPEPDFSAQYTFSTSCVG-TCVATASDGPAPSNPTI 90 Query 91 PRPIEYTWNGTQWVREISWQWDCLLPDGT-IEYAPAKSITAYTPGQYGILTGVFHTDIAS 149 P+P YTW+G QW+ +WQW+C +G EYA A+S+ Y P G + G + T+I Sbjct 91 PQPTRYTWDGRQWIFNYNWQWECFRGEGLPREYAAARSLVFYAPTADGSMYGTWRTEILD 150 Query 150 GTCKGNVDMPVSAKPI 165 G CKG V MPV+A P+ Sbjct 151 GVCKGTVVMPVAAYPV 166 >gi|315443228|ref|YP_004076107.1| hypothetical protein Mspyr1_16050 [Mycobacterium sp. Spyr1] gi|315261531|gb|ADT98272.1| hypothetical protein Mspyr1_16050 [Mycobacterium sp. Spyr1] Length=166 Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 62/136 (46%), Positives = 81/136 (60%), Gaps = 2/136 (1%) Query 31 PSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKNEFI 90 P WNG+Y V A+ K GTS+A +PE A YTFS+ C C+AT D P P N I Sbjct 32 PDWNGRYTVVTFASQKIGTSIATRQPEPDFSAQYTFSTSCVG-TCVATASDGPAPSNPTI 90 Query 91 PRPIEYTWNGTQWVREISWQWDCLLPDGT-IEYAPAKSITAYTPGQYGILTGVFHTDIAS 149 P+P YTW+G QW+ +WQW+C +G EYA A+S+ Y P G + G + T+I Sbjct 91 PQPTRYTWDGRQWIFNYNWQWECFRGEGLPREYAAARSLVFYAPTADGSMYGTWRTEILD 150 Query 150 GTCKGNVDMPVSAKPI 165 G CKG V MPV+A P+ Sbjct 151 GVCKGTVVMPVAAYPV 166 >gi|312139756|ref|YP_004007092.1| hypothetical protein REQ_23650 [Rhodococcus equi 103S] gi|311889095|emb|CBH48408.1| putative secreted protein [Rhodococcus equi 103S] Length=172 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 67/161 (42%), Positives = 92/161 (58%), Gaps = 1/161 (0%) Query 6 KKAMLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYT 65 +KA+ A+A ++ + A +PSW+G Y V A KTGTS+AA++ E YT Sbjct 2 RKALSAVALVAVWSVAGSLPAGAGQPSWSGDYSVKRFAATKTGTSLAASQWEPDFADVYT 61 Query 66 FSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAP 124 F + C C+ATVV P P N +P+P YTW+G WV W+WDC + +G + +AP Sbjct 62 FETTCTDGTCVATVVGGPAPANPTLPQPARYTWDGASWVHPYDWEWDCWMGEGNPKVWAP 121 Query 125 AKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 A S YTP G L G + TDIA G C G+V M V+A P+ Sbjct 122 AHSEAYYTPQPDGTLVGSWRTDIAGGPCAGSVIMDVAAYPV 162 >gi|229489127|ref|ZP_04382993.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] gi|229324631|gb|EEN90386.1| conserved hypothetical protein [Rhodococcus erythropolis SK121] Length=165 Score = 126 bits (316), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 71/158 (45%), Positives = 91/158 (58%), Gaps = 3/158 (1%) Query 9 MLALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSS 68 M+AL A A P AA+ +W+G Y + A KTGTS+AA++ E YTF + Sbjct 1 MVALVATWFVAGAMP--AGAADANWSGDYSLKRFAATKTGTSLAASQWEPDFSDTYTFET 58 Query 69 RCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-YAPAKS 127 C+S VCIATVV P P N +P+P YTW+GT WV W+WDC +G + +APA S Sbjct 59 DCSSGVCIATVVGGPAPANPTLPQPARYTWDGTSWVHPYDWEWDCYQGEGVPKVWAPAHS 118 Query 128 ITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 YTP G L G + TDI SG C G+V M V A P+ Sbjct 119 EAYYTPQPDGSLKGSWRTDIKSGPCAGSVIMRVEAYPV 156 >gi|226359943|ref|YP_002777721.1| hypothetical protein ROP_05290 [Rhodococcus opacus B4] gi|226238428|dbj|BAH48776.1| hypothetical protein [Rhodococcus opacus B4] Length=175 Score = 122 bits (306), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 69/163 (43%), Positives = 93/163 (58%), Gaps = 3/163 (1%) Query 6 KKAML--ALAAASLAATLAPNAVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKAN 63 +K++L AL A+ A P A +PSW+G+Y + A KTGTS+AA + E Sbjct 2 RKSLLIVALIASWSVAGAVPAGAAPMQPSWSGEYSLKRFAATKTGTSLAARQWEPDFADT 61 Query 64 YTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIE-Y 122 Y F + C D C+ATV D P P N +P P Y W+GT WV W+WDC +G + + Sbjct 62 YRFETSCTDDSCVATVTDGPTPANPTLPLPPRYIWDGTSWVHTYDWEWDCYQGEGVPKVW 121 Query 123 APAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKPI 165 APA S+ YTP G LTG + TDI G C+G+V M V+A P+ Sbjct 122 APAHSVAYYTPQPDGTLTGSWRTDIDGGPCEGSVIMDVAAYPV 164 >gi|343924470|ref|ZP_08764019.1| hypothetical protein GOALK_016_00680 [Gordonia alkanivorans NBRC 16433] gi|343765614|dbj|GAA10945.1| hypothetical protein GOALK_016_00680 [Gordonia alkanivorans NBRC 16433] Length=157 Score = 111 bits (278), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 57/134 (43%), Positives = 74/134 (56%), Gaps = 1/134 (0%) Query 33 WNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKNEFIPR 92 WNG Y + A +KTGTS+AA + E +YTF++ C C+ATV+D P P N +P+ Sbjct 14 WNGVYSLKRFAASKTGTSLAARQAEPDFSDDYTFTTSCDGGTCVATVIDGPKPANPTLPQ 73 Query 93 PIEYTWNGTQWVREISWQWDCLLPDGTIE-YAPAKSITAYTPGQYGILTGVFHTDIASGT 151 P YTW WV WQWDC G + + PA S+ Y P G L GV+ T I G Sbjct 74 PPRYTWEAGSWVHRYDWQWDCWQGAGVPKVWRPATSVATYAPQGDGTLKGVWRTTIDGGP 133 Query 152 CKGNVDMPVSAKPI 165 C G V M V+A P+ Sbjct 134 CDGTVVMNVAAYPV 147 >gi|116747977|ref|YP_844664.1| polysaccharide export protein [Syntrophobacter fumaroxidans MPOB] gi|116697041|gb|ABK16229.1| polysaccharide export protein [Syntrophobacter fumaroxidans MPOB] Length=1055 Score = 37.7 bits (86), Expect = 0.55, Method: Compositional matrix adjust. Identities = 16/39 (42%), Positives = 22/39 (57%), Gaps = 0/39 (0%) Query 92 RPIEYTWNGTQWVREISWQWDCLLPDGTIEYAPAKSITA 130 RP EY W V++I +D LLPD +EYA + + A Sbjct 621 RPGEYEWKHGMRVKDIIRNFDALLPDAMLEYALVERLVA 659 >gi|46135901|ref|XP_389642.1| hypothetical protein FG09466.1 [Gibberella zeae PH-1] Length=776 Score = 37.0 bits (84), Expect = 0.88, Method: Compositional matrix adjust. Identities = 28/85 (33%), Positives = 40/85 (48%), Gaps = 5/85 (5%) Query 25 AVAAAEPSWNGQYLVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPP 84 A A AEPS + + +A AK G A + P K +S DV +VDAPP Sbjct 292 AQAFAEPSPDD---IVFAAQAKAGKQPAPKAAKKPQKEKVKDASEAEKDVAGLKIVDAPP 348 Query 85 PKNEFIPRPIEYTWNGTQWVREISW 109 PK++ + EY + + R IS+ Sbjct 349 PKSKGLDVLKEYENSSNK--RSISF 371 >gi|147802621|emb|CAN77528.1| hypothetical protein VITISV_041424 [Vitis vinifera] Length=705 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 17/48 (36%), Positives = 26/48 (55%), Gaps = 5/48 (10%) Query 82 APPPKNEFIPRPIEYTWNGTQWVREISWQWDCLLPDGTIEYAPAKSIT 129 AP P + +PRP + G++WV + LPDG+IE A+ +T Sbjct 363 APTPAHLLVPRPADTNIVGSKWVFRTKY-----LPDGSIERLKARLVT 405 >gi|167584894|ref|ZP_02377282.1| L-carnitine dehydratase/bile acid-inducible protein F [Burkholderia ubonensis Bu] Length=353 Score = 34.3 bits (77), Expect = 5.8, Method: Compositional matrix adjust. Identities = 32/137 (24%), Positives = 52/137 (38%), Gaps = 20/137 (14%) Query 38 LVTLSANAKTGTSMAANRPEYPHKANYTFSSRCASDVCIATVVDAPPPKNEFIPRPIEYT 97 L TL+ A+ + +P H A + RCA C+ T+ PP + + T Sbjct 206 LGTLALWARANGQLDGAQPSLFHDAPFYDVYRCADGECV-TIGALEPPFYALLVERLGLT 264 Query 98 -------WNGTQW-----------VREISWQWDCLLPDGTIEYAPAKSITAYTPGQYGIL 139 ++ +W R+ S W LL +AP S+ + + Sbjct 265 DVDPATQYDRARWPALKARFAEVFARQPSAHWRALLEGSDACFAPVLSVAEAAEHPHNVA 324 Query 140 TGVFHTDIASGTCKGNV 156 G++ TD A GT + NV Sbjct 325 RGIYRTD-ADGTVRANV 340 >gi|68535285|ref|YP_249990.1| putative cell surface protein [Corynebacterium jeikeium K411] gi|68262884|emb|CAI36372.1| putative cell surface protein [Corynebacterium jeikeium K411] Length=669 Score = 34.3 bits (77), Expect = 6.9, Method: Compositional matrix adjust. Identities = 17/55 (31%), Positives = 29/55 (53%), Gaps = 3/55 (5%) Query 110 QWDCLLPDGTIEYAPAKSITAYTPGQYGILTGVFHTDIASGTCKGNVDMPVSAKP 164 +W + PDGT+ P K + PG+Y + + ++D AS T + V++ KP Sbjct 565 EWATVKPDGTVTLKPGKDV---EPGEYTVPVEITYSDGASSTVELKVNVEKQDKP 616 Lambda K H 0.316 0.129 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Effective search space used: 127548590676 Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects Posted date: Sep 5, 2011 4:36 AM Number of letters in database: 5,219,829,388 Number of sequences in database: 15,229,318 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Neighboring words threshold: 11 Window for multiple hits: 40